Multiple sequence alignment - TraesCS7B01G209100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G209100 chr7B 100.000 5482 0 0 1 5482 382270409 382275890 0.000000e+00 10124.0
1 TraesCS7B01G209100 chr7B 85.039 254 28 6 2319 2565 41330085 41330335 3.280000e-62 250.0
2 TraesCS7B01G209100 chr7D 96.967 2671 66 9 2310 4974 387213011 387215672 0.000000e+00 4470.0
3 TraesCS7B01G209100 chr7D 92.686 916 49 8 1409 2312 387212055 387212964 0.000000e+00 1304.0
4 TraesCS7B01G209100 chr7D 95.019 783 18 10 643 1406 387211222 387212002 0.000000e+00 1210.0
5 TraesCS7B01G209100 chr7D 82.953 657 66 10 1 650 386923276 386923893 8.030000e-153 551.0
6 TraesCS7B01G209100 chr7D 91.724 145 11 1 5278 5421 387215669 387215813 3.350000e-47 200.0
7 TraesCS7B01G209100 chr7D 97.143 70 2 0 5413 5482 387218784 387218853 9.650000e-23 119.0
8 TraesCS7B01G209100 chr7D 84.337 83 13 0 2210 2292 590188075 590187993 1.270000e-11 82.4
9 TraesCS7B01G209100 chr7A 95.196 2685 76 14 2310 4974 437063553 437066204 0.000000e+00 4194.0
10 TraesCS7B01G209100 chr7A 95.870 799 26 3 615 1406 437061793 437062591 0.000000e+00 1286.0
11 TraesCS7B01G209100 chr7A 95.582 498 16 1 1409 1906 437062644 437063135 0.000000e+00 793.0
12 TraesCS7B01G209100 chr7A 99.346 306 2 0 4973 5278 4442370 4442065 6.200000e-154 555.0
13 TraesCS7B01G209100 chr7A 93.207 368 21 2 1949 2312 437063140 437063507 6.250000e-149 538.0
14 TraesCS7B01G209100 chr7A 86.408 206 20 2 5278 5482 437066201 437066399 9.250000e-53 219.0
15 TraesCS7B01G209100 chr1A 95.114 307 14 1 4973 5278 212015818 212016124 2.970000e-132 483.0
16 TraesCS7B01G209100 chr3D 95.098 306 14 1 4973 5278 99746555 99746859 1.070000e-131 481.0
17 TraesCS7B01G209100 chr4A 95.033 302 14 1 4977 5277 65426320 65426621 1.790000e-129 473.0
18 TraesCS7B01G209100 chr4A 86.466 266 20 10 2309 2564 513378836 513378577 1.500000e-70 278.0
19 TraesCS7B01G209100 chr6B 93.354 316 20 1 4970 5284 202348752 202348437 2.990000e-127 466.0
20 TraesCS7B01G209100 chr6B 91.641 323 25 2 4961 5281 511571759 511571437 3.900000e-121 446.0
21 TraesCS7B01G209100 chr1D 94.118 306 18 0 4973 5278 309140717 309141022 2.990000e-127 466.0
22 TraesCS7B01G209100 chr5B 93.291 313 21 0 4969 5281 496093525 496093837 3.870000e-126 462.0
23 TraesCS7B01G209100 chr2B 92.926 311 22 0 4968 5278 470786053 470786363 2.330000e-123 453.0
24 TraesCS7B01G209100 chr2D 87.170 265 24 6 2309 2566 38631539 38631800 5.370000e-75 292.0
25 TraesCS7B01G209100 chr2D 86.747 83 11 0 2210 2292 540219352 540219434 5.850000e-15 93.5
26 TraesCS7B01G209100 chr2D 86.747 83 11 0 2210 2292 540220280 540220362 5.850000e-15 93.5
27 TraesCS7B01G209100 chr6D 86.842 266 25 6 2308 2566 176895386 176895648 6.950000e-74 289.0
28 TraesCS7B01G209100 chr4D 87.500 224 24 2 2310 2530 367800749 367800527 7.050000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G209100 chr7B 382270409 382275890 5481 False 10124.0 10124 100.0000 1 5482 1 chr7B.!!$F2 5481
1 TraesCS7B01G209100 chr7D 387211222 387218853 7631 False 1460.6 4470 94.7078 643 5482 5 chr7D.!!$F2 4839
2 TraesCS7B01G209100 chr7D 386923276 386923893 617 False 551.0 551 82.9530 1 650 1 chr7D.!!$F1 649
3 TraesCS7B01G209100 chr7A 437061793 437066399 4606 False 1406.0 4194 93.2526 615 5482 5 chr7A.!!$F1 4867

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 579 0.036732 AAGCACGAGCATTCCTCCAA 59.963 50.000 7.77 0.0 45.49 3.53 F
574 581 0.881118 GCACGAGCATTCCTCCAAAA 59.119 50.000 0.00 0.0 41.58 2.44 F
759 768 1.151668 CCAAGTTCTGACTTCGCCTG 58.848 55.000 0.00 0.0 44.14 4.85 F
1370 1394 1.221414 GAATTCGAAGGCTGATCCGG 58.779 55.000 3.35 0.0 40.77 5.14 F
1407 1431 1.376942 GGAGGAGACGAGACGGACA 60.377 63.158 0.00 0.0 0.00 4.02 F
2336 2471 1.455587 CCTGGTTTGCAGTGGGTGT 60.456 57.895 0.00 0.0 0.00 4.16 F
2957 3094 3.417069 TTAGCCTGCTTTAGCTGTCAA 57.583 42.857 0.00 0.0 40.28 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 1995 0.106868 CATGGCCTGCAGATTGGAGA 60.107 55.000 17.39 0.0 38.14 3.71 R
2316 2451 0.540365 CACCCACTGCAAACCAGGAT 60.540 55.000 0.00 0.0 46.14 3.24 R
2322 2457 2.488153 GAGGATAACACCCACTGCAAAC 59.512 50.000 0.00 0.0 0.00 2.93 R
2858 2995 4.728772 TGTCTGATGAAAACCAACCTCAT 58.271 39.130 0.00 0.0 32.49 2.90 R
3038 3175 5.363101 TGATGACCATCATGCTAGACTTTC 58.637 41.667 8.49 0.0 42.42 2.62 R
3518 3655 2.297701 GCTGTTCCAAGGAGAAACACA 58.702 47.619 0.00 0.0 0.00 3.72 R
4874 5027 1.071471 CCGTCTTGTTGGCAGGACT 59.929 57.895 7.94 0.0 45.86 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.712655 CGCACACGTCAAGGACAA 58.287 55.556 0.00 0.00 32.09 3.18
44 45 1.885850 ACGTCAAGGACAACCGCAC 60.886 57.895 0.00 0.00 41.83 5.34
75 77 3.984193 AACCGCATCCAGGAGCTGC 62.984 63.158 5.07 5.07 0.00 5.25
83 85 4.463879 CAGGAGCTGCGGTGGAGG 62.464 72.222 0.00 0.00 0.00 4.30
110 113 0.107017 CGCCACTTCATCATCCCCTT 60.107 55.000 0.00 0.00 0.00 3.95
111 114 1.140852 CGCCACTTCATCATCCCCTTA 59.859 52.381 0.00 0.00 0.00 2.69
112 115 2.808202 CGCCACTTCATCATCCCCTTAG 60.808 54.545 0.00 0.00 0.00 2.18
113 116 2.173569 GCCACTTCATCATCCCCTTAGT 59.826 50.000 0.00 0.00 0.00 2.24
114 117 3.813443 CCACTTCATCATCCCCTTAGTG 58.187 50.000 0.00 0.00 33.21 2.74
182 185 1.323271 TGCTCGAAGCCCTAGACCAG 61.323 60.000 0.00 0.00 41.51 4.00
185 188 1.611491 CTCGAAGCCCTAGACCAGATC 59.389 57.143 0.00 0.00 0.00 2.75
194 197 0.478942 TAGACCAGATCGGGAGGGAG 59.521 60.000 19.55 0.00 40.22 4.30
196 199 2.525381 CCAGATCGGGAGGGAGGG 60.525 72.222 5.91 0.00 0.00 4.30
198 201 3.851184 AGATCGGGAGGGAGGGGG 61.851 72.222 0.00 0.00 0.00 5.40
221 225 1.044611 GAAGAAGGAGATCGGGAGGG 58.955 60.000 0.00 0.00 0.00 4.30
224 228 0.186386 GAAGGAGATCGGGAGGGAGA 59.814 60.000 0.00 0.00 0.00 3.71
225 229 0.637195 AAGGAGATCGGGAGGGAGAA 59.363 55.000 0.00 0.00 0.00 2.87
227 231 0.186386 GGAGATCGGGAGGGAGAAGA 59.814 60.000 0.00 0.00 0.00 2.87
229 233 2.167662 GAGATCGGGAGGGAGAAGATC 58.832 57.143 0.00 0.00 38.29 2.75
232 236 0.179015 TCGGGAGGGAGAAGATCGAG 60.179 60.000 0.00 0.00 0.00 4.04
233 237 0.179015 CGGGAGGGAGAAGATCGAGA 60.179 60.000 0.00 0.00 0.00 4.04
234 238 1.616159 GGGAGGGAGAAGATCGAGAG 58.384 60.000 0.00 0.00 0.00 3.20
235 239 1.616159 GGAGGGAGAAGATCGAGAGG 58.384 60.000 0.00 0.00 0.00 3.69
236 240 1.144093 GGAGGGAGAAGATCGAGAGGA 59.856 57.143 0.00 0.00 0.00 3.71
237 241 2.423660 GGAGGGAGAAGATCGAGAGGAA 60.424 54.545 0.00 0.00 0.00 3.36
238 242 2.884639 GAGGGAGAAGATCGAGAGGAAG 59.115 54.545 0.00 0.00 0.00 3.46
239 243 1.960689 GGGAGAAGATCGAGAGGAAGG 59.039 57.143 0.00 0.00 0.00 3.46
240 244 1.960689 GGAGAAGATCGAGAGGAAGGG 59.039 57.143 0.00 0.00 0.00 3.95
241 245 1.960689 GAGAAGATCGAGAGGAAGGGG 59.039 57.143 0.00 0.00 0.00 4.79
242 246 1.044611 GAAGATCGAGAGGAAGGGGG 58.955 60.000 0.00 0.00 0.00 5.40
243 247 0.340208 AAGATCGAGAGGAAGGGGGT 59.660 55.000 0.00 0.00 0.00 4.95
244 248 0.105913 AGATCGAGAGGAAGGGGGTC 60.106 60.000 0.00 0.00 0.00 4.46
245 249 1.455959 ATCGAGAGGAAGGGGGTCG 60.456 63.158 0.00 0.00 0.00 4.79
258 262 2.579738 GGTCGAGAGAAGGGTGGC 59.420 66.667 0.00 0.00 45.01 5.01
285 289 1.566703 TCGAGGAGGAAGGAGATGAGT 59.433 52.381 0.00 0.00 0.00 3.41
331 338 5.795972 TGTACGATAATCCAACAACCTGAA 58.204 37.500 0.00 0.00 0.00 3.02
429 436 2.420642 TGCTTCTCTGAATCACACAGC 58.579 47.619 0.00 0.00 35.61 4.40
438 445 1.204941 GAATCACACAGCCTCTACCGT 59.795 52.381 0.00 0.00 0.00 4.83
439 446 0.532573 ATCACACAGCCTCTACCGTG 59.467 55.000 0.00 0.00 35.48 4.94
440 447 0.826256 TCACACAGCCTCTACCGTGT 60.826 55.000 0.00 0.00 43.12 4.49
441 448 0.885879 CACACAGCCTCTACCGTGTA 59.114 55.000 0.00 0.00 40.49 2.90
442 449 1.271379 CACACAGCCTCTACCGTGTAA 59.729 52.381 0.00 0.00 40.49 2.41
443 450 1.271656 ACACAGCCTCTACCGTGTAAC 59.728 52.381 0.00 0.00 40.66 2.50
444 451 1.544691 CACAGCCTCTACCGTGTAACT 59.455 52.381 0.00 0.00 31.75 2.24
445 452 2.029290 CACAGCCTCTACCGTGTAACTT 60.029 50.000 0.00 0.00 31.75 2.66
446 453 2.029290 ACAGCCTCTACCGTGTAACTTG 60.029 50.000 0.00 0.00 31.75 3.16
447 454 1.549170 AGCCTCTACCGTGTAACTTGG 59.451 52.381 0.00 0.00 31.75 3.61
448 455 2.005560 GCCTCTACCGTGTAACTTGGC 61.006 57.143 0.00 0.00 31.75 4.52
449 456 1.549170 CCTCTACCGTGTAACTTGGCT 59.451 52.381 0.00 0.00 31.75 4.75
450 457 2.756760 CCTCTACCGTGTAACTTGGCTA 59.243 50.000 0.00 0.00 31.75 3.93
451 458 3.428589 CCTCTACCGTGTAACTTGGCTAC 60.429 52.174 0.00 0.00 31.75 3.58
452 459 3.156293 TCTACCGTGTAACTTGGCTACA 58.844 45.455 0.00 0.00 31.75 2.74
453 460 2.450609 ACCGTGTAACTTGGCTACAG 57.549 50.000 0.00 0.00 30.04 2.74
454 461 1.965643 ACCGTGTAACTTGGCTACAGA 59.034 47.619 0.00 0.00 30.04 3.41
455 462 2.029290 ACCGTGTAACTTGGCTACAGAG 60.029 50.000 0.00 0.00 30.04 3.35
456 463 1.993370 CGTGTAACTTGGCTACAGAGC 59.007 52.381 0.00 0.00 41.21 4.09
457 464 2.609491 CGTGTAACTTGGCTACAGAGCA 60.609 50.000 0.00 0.00 43.00 4.26
458 465 3.923053 CGTGTAACTTGGCTACAGAGCAT 60.923 47.826 0.00 0.00 43.00 3.79
487 494 5.281693 TCTTATGAGACACATGCAAAACG 57.718 39.130 0.00 0.00 39.77 3.60
488 495 4.994217 TCTTATGAGACACATGCAAAACGA 59.006 37.500 0.00 0.00 39.77 3.85
526 533 7.687941 AAGATGTAAAATCACGGTGAATCTT 57.312 32.000 20.00 20.00 27.65 2.40
546 553 1.004918 AGTACTTGGGTGTGCGCTC 60.005 57.895 9.73 5.51 0.00 5.03
555 562 1.202031 GGGTGTGCGCTCGAAAATAAG 60.202 52.381 9.73 0.00 0.00 1.73
564 571 3.933155 CTCGAAAATAAGCACGAGCAT 57.067 42.857 7.77 0.00 43.71 3.79
567 574 3.063452 TCGAAAATAAGCACGAGCATTCC 59.937 43.478 7.77 0.00 45.49 3.01
571 578 0.901827 TAAGCACGAGCATTCCTCCA 59.098 50.000 7.77 0.00 45.49 3.86
572 579 0.036732 AAGCACGAGCATTCCTCCAA 59.963 50.000 7.77 0.00 45.49 3.53
574 581 0.881118 GCACGAGCATTCCTCCAAAA 59.119 50.000 0.00 0.00 41.58 2.44
579 586 5.708948 CACGAGCATTCCTCCAAAATAAAA 58.291 37.500 0.00 0.00 37.27 1.52
584 591 3.586100 TTCCTCCAAAATAAAAGCCGC 57.414 42.857 0.00 0.00 0.00 6.53
585 592 2.520069 TCCTCCAAAATAAAAGCCGCA 58.480 42.857 0.00 0.00 0.00 5.69
612 619 9.605955 AAAAAGAAAACACAAATTTTACAGTGC 57.394 25.926 6.35 0.00 35.47 4.40
617 624 5.942325 ACACAAATTTTACAGTGCGTTTC 57.058 34.783 6.35 0.00 35.47 2.78
619 626 4.039032 ACAAATTTTACAGTGCGTTTCGG 58.961 39.130 0.00 0.00 0.00 4.30
670 679 4.481368 ACTAAATTGCCGATCCTGTGTA 57.519 40.909 0.00 0.00 0.00 2.90
759 768 1.151668 CCAAGTTCTGACTTCGCCTG 58.848 55.000 0.00 0.00 44.14 4.85
763 772 2.217038 TTCTGACTTCGCCTGGCCT 61.217 57.895 14.12 0.00 0.00 5.19
785 795 7.913821 GGCCTAACTTTTTGATATCGTTAAAGG 59.086 37.037 19.55 12.86 31.74 3.11
1239 1259 2.631428 GCAAGTTTCGTCGCTGCA 59.369 55.556 0.00 0.00 0.00 4.41
1358 1382 1.445410 CAGTCCACCGCGAATTCGA 60.445 57.895 31.01 6.29 43.02 3.71
1370 1394 1.221414 GAATTCGAAGGCTGATCCGG 58.779 55.000 3.35 0.00 40.77 5.14
1406 1430 2.462782 CGGAGGAGACGAGACGGAC 61.463 68.421 0.00 0.00 0.00 4.79
1407 1431 1.376942 GGAGGAGACGAGACGGACA 60.377 63.158 0.00 0.00 0.00 4.02
1427 1501 4.785301 ACATTTGTGATGGATCGGATCTT 58.215 39.130 16.96 5.90 0.00 2.40
1437 1511 3.131223 TGGATCGGATCTTTGTCTCTGTC 59.869 47.826 16.96 0.00 0.00 3.51
1441 1515 4.844884 TCGGATCTTTGTCTCTGTCTCTA 58.155 43.478 0.00 0.00 0.00 2.43
1531 1607 1.576356 GGCTCTTCTCATACTTGCGG 58.424 55.000 0.00 0.00 0.00 5.69
1534 1610 3.376540 GCTCTTCTCATACTTGCGGTAG 58.623 50.000 0.00 0.00 33.51 3.18
1548 1624 1.935933 CGGTAGCAAGCGTTTATCCT 58.064 50.000 0.00 0.00 41.60 3.24
1550 1626 2.793232 CGGTAGCAAGCGTTTATCCTAC 59.207 50.000 7.60 7.60 41.60 3.18
1575 1651 9.021807 ACAATTCATCAAAATGAGTCTCATTCT 57.978 29.630 24.89 11.71 45.57 2.40
1638 1714 8.980596 TGAATAGCCAGATTATGTCCAAAATTT 58.019 29.630 0.00 0.00 0.00 1.82
2001 2081 3.161866 TGCCTATCTTTTTGGACCAACC 58.838 45.455 6.36 0.00 39.54 3.77
2046 2126 9.841880 CTATAATGATTCATGGAAATTGAGCAG 57.158 33.333 0.00 0.00 0.00 4.24
2087 2167 8.091449 TGTTCTATTCTCTCTCCTTGTTTCTTC 58.909 37.037 0.00 0.00 0.00 2.87
2102 2182 3.644966 TTCTTCGGCCCAACTCAATAT 57.355 42.857 0.00 0.00 0.00 1.28
2128 2208 7.639113 AACAAGATTAACAACACTCCAAGAA 57.361 32.000 0.00 0.00 0.00 2.52
2159 2241 7.498900 TGGTACAAATAGAAATACTGATGCTGG 59.501 37.037 0.00 0.00 31.92 4.85
2187 2269 9.897744 ATTTCTGTATGTACAAATTCAAGTGTG 57.102 29.630 0.00 0.00 35.50 3.82
2191 2273 8.445275 TGTATGTACAAATTCAAGTGTGAACT 57.555 30.769 0.00 0.00 38.73 3.01
2199 2281 8.070171 ACAAATTCAAGTGTGAACTTCGATAAG 58.930 33.333 0.00 0.00 46.40 1.73
2210 2292 3.674997 ACTTCGATAAGCCTTGCTTCAA 58.325 40.909 4.33 0.00 46.77 2.69
2236 2318 4.657436 TTGAAAACCCGCTTTGTAACAT 57.343 36.364 0.00 0.00 0.00 2.71
2284 2366 7.541162 TCTGGAGTGCTTTCATAATTTCATTG 58.459 34.615 0.00 0.00 0.00 2.82
2302 2388 7.451501 TTCATTGATGTGCTTAAACTGATGA 57.548 32.000 0.00 0.00 0.00 2.92
2322 2457 9.362539 CTGATGAATTCTTTTTGTTTATCCTGG 57.637 33.333 7.05 0.00 0.00 4.45
2336 2471 1.455587 CCTGGTTTGCAGTGGGTGT 60.456 57.895 0.00 0.00 0.00 4.16
2470 2605 3.743396 TCAAATTTTTACATGGTTGCCGC 59.257 39.130 0.00 0.00 0.00 6.53
2709 2844 8.135529 TGTTCTCTGTCAGTATATTATGTTCCG 58.864 37.037 0.00 0.00 0.00 4.30
2858 2995 7.619512 AACACCACCCCTTCATTTTAAATAA 57.380 32.000 0.00 0.00 0.00 1.40
2880 3017 4.163441 TGAGGTTGGTTTTCATCAGACA 57.837 40.909 0.00 0.00 0.00 3.41
2957 3094 3.417069 TTAGCCTGCTTTAGCTGTCAA 57.583 42.857 0.00 0.00 40.28 3.18
3418 3555 6.886459 AGATGTTGAAGGCAATAAGTATGTGT 59.114 34.615 0.00 0.00 36.22 3.72
3420 3557 7.987750 TGTTGAAGGCAATAAGTATGTGTAA 57.012 32.000 0.00 0.00 36.22 2.41
3445 3582 6.702329 TCTCTGGTTTTAGATTGAGAAGGTC 58.298 40.000 0.00 0.00 0.00 3.85
3470 3607 3.432933 GCGTAGGTTGTAATCGGTTTTGA 59.567 43.478 0.00 0.00 0.00 2.69
3484 3621 5.698832 TCGGTTTTGAAACTGATGCTAATG 58.301 37.500 12.78 0.00 46.35 1.90
3518 3655 1.556911 AGCATTACAGTGCCTGTAGCT 59.443 47.619 16.45 16.45 45.83 3.32
3548 3685 0.680618 TTGGAACAGCATTTGGCCTG 59.319 50.000 3.32 0.00 46.50 4.85
3650 3787 1.982395 CAGCTGGGTCGGAGTGGTA 60.982 63.158 5.57 0.00 0.00 3.25
3669 3806 5.542635 GTGGTATATCAGATGGGTGGAGTTA 59.457 44.000 0.00 0.00 0.00 2.24
3671 3808 6.792473 TGGTATATCAGATGGGTGGAGTTATT 59.208 38.462 0.00 0.00 0.00 1.40
3674 3811 2.575735 TCAGATGGGTGGAGTTATTGCA 59.424 45.455 0.00 0.00 0.00 4.08
4508 4649 4.098654 CGAAGGTAGTGAGATCTTGGACAT 59.901 45.833 0.00 0.00 0.00 3.06
4510 4651 6.015856 CGAAGGTAGTGAGATCTTGGACATAT 60.016 42.308 0.00 0.00 0.00 1.78
4625 4766 4.964897 TGATCCAGGAGAATTGAGCTCTTA 59.035 41.667 16.19 3.24 32.98 2.10
4782 4924 4.685924 GGGCACATCATAAAGGTCAATTG 58.314 43.478 0.00 0.00 0.00 2.32
4783 4925 4.402155 GGGCACATCATAAAGGTCAATTGA 59.598 41.667 3.38 3.38 0.00 2.57
4835 4988 1.272092 CCATCAGGTGCTCCCAAAGAA 60.272 52.381 0.00 0.00 34.66 2.52
4874 5027 6.839124 TGGTATACTTCGTTACTTTGGAGA 57.161 37.500 2.25 0.00 0.00 3.71
4890 5043 1.609320 GGAGAGTCCTGCCAACAAGAC 60.609 57.143 0.00 0.00 37.49 3.01
4931 5084 6.980978 AGTATGTCTGTATGCACATTGTACTC 59.019 38.462 0.00 0.00 34.92 2.59
4943 5118 8.208718 TGCACATTGTACTCCTTCAAATATAC 57.791 34.615 0.00 0.00 0.00 1.47
4990 5166 6.739331 TTTTTAGGGCTCCTTTGATTCAAA 57.261 33.333 11.19 11.19 34.61 2.69
5002 5178 4.782019 TTGATTCAAAGGAATTCCGTGG 57.218 40.909 23.30 17.24 43.69 4.94
5003 5179 3.088532 TGATTCAAAGGAATTCCGTGGG 58.911 45.455 23.30 15.32 43.69 4.61
5004 5180 2.961531 TTCAAAGGAATTCCGTGGGA 57.038 45.000 23.30 16.95 42.08 4.37
5005 5181 3.449746 TTCAAAGGAATTCCGTGGGAT 57.550 42.857 23.30 4.36 42.08 3.85
5006 5182 3.449746 TCAAAGGAATTCCGTGGGATT 57.550 42.857 23.30 9.32 42.08 3.01
5007 5183 3.773560 TCAAAGGAATTCCGTGGGATTT 58.226 40.909 23.30 13.87 42.08 2.17
5008 5184 4.156477 TCAAAGGAATTCCGTGGGATTTT 58.844 39.130 23.30 13.29 42.08 1.82
5009 5185 4.591072 TCAAAGGAATTCCGTGGGATTTTT 59.409 37.500 23.30 12.70 42.08 1.94
5010 5186 4.535526 AAGGAATTCCGTGGGATTTTTG 57.464 40.909 18.82 0.00 42.08 2.44
5011 5187 2.831526 AGGAATTCCGTGGGATTTTTGG 59.168 45.455 18.82 0.00 42.08 3.28
5012 5188 2.829120 GGAATTCCGTGGGATTTTTGGA 59.171 45.455 9.17 0.00 0.00 3.53
5013 5189 3.119137 GGAATTCCGTGGGATTTTTGGAG 60.119 47.826 9.17 0.00 0.00 3.86
5014 5190 1.917872 TTCCGTGGGATTTTTGGAGG 58.082 50.000 0.00 0.00 0.00 4.30
5015 5191 0.039035 TCCGTGGGATTTTTGGAGGG 59.961 55.000 0.00 0.00 0.00 4.30
5016 5192 0.251608 CCGTGGGATTTTTGGAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
5017 5193 1.627864 CGTGGGATTTTTGGAGGGTT 58.372 50.000 0.00 0.00 0.00 4.11
5018 5194 2.555670 CCGTGGGATTTTTGGAGGGTTA 60.556 50.000 0.00 0.00 0.00 2.85
5019 5195 2.752903 CGTGGGATTTTTGGAGGGTTAG 59.247 50.000 0.00 0.00 0.00 2.34
5020 5196 3.560453 CGTGGGATTTTTGGAGGGTTAGA 60.560 47.826 0.00 0.00 0.00 2.10
5021 5197 4.412843 GTGGGATTTTTGGAGGGTTAGAA 58.587 43.478 0.00 0.00 0.00 2.10
5022 5198 5.023452 GTGGGATTTTTGGAGGGTTAGAAT 58.977 41.667 0.00 0.00 0.00 2.40
5023 5199 5.127194 GTGGGATTTTTGGAGGGTTAGAATC 59.873 44.000 0.00 0.00 0.00 2.52
5024 5200 4.649674 GGGATTTTTGGAGGGTTAGAATCC 59.350 45.833 0.00 0.00 40.01 3.01
5025 5201 5.519808 GGATTTTTGGAGGGTTAGAATCCT 58.480 41.667 0.00 0.00 43.90 3.24
5026 5202 5.958380 GGATTTTTGGAGGGTTAGAATCCTT 59.042 40.000 0.00 0.00 40.40 3.36
5027 5203 7.123383 GGATTTTTGGAGGGTTAGAATCCTTA 58.877 38.462 0.00 0.00 40.40 2.69
5028 5204 7.285629 GGATTTTTGGAGGGTTAGAATCCTTAG 59.714 40.741 0.00 0.00 40.40 2.18
5029 5205 5.710409 TTTGGAGGGTTAGAATCCTTAGG 57.290 43.478 0.00 0.00 40.40 2.69
5030 5206 4.637288 TGGAGGGTTAGAATCCTTAGGA 57.363 45.455 2.37 2.37 40.40 2.94
5031 5207 5.171541 TGGAGGGTTAGAATCCTTAGGAT 57.828 43.478 8.15 8.15 45.46 3.24
5057 5233 8.568732 TTTTTCCTATGTTTGTCGTTTGATTC 57.431 30.769 0.00 0.00 0.00 2.52
5058 5234 6.869315 TTCCTATGTTTGTCGTTTGATTCA 57.131 33.333 0.00 0.00 0.00 2.57
5059 5235 7.447374 TTCCTATGTTTGTCGTTTGATTCAT 57.553 32.000 0.00 0.00 0.00 2.57
5060 5236 8.554835 TTCCTATGTTTGTCGTTTGATTCATA 57.445 30.769 0.00 0.00 0.00 2.15
5061 5237 8.196802 TCCTATGTTTGTCGTTTGATTCATAG 57.803 34.615 0.00 0.00 35.63 2.23
5062 5238 7.279981 TCCTATGTTTGTCGTTTGATTCATAGG 59.720 37.037 16.84 16.84 46.97 2.57
5063 5239 8.196802 CTATGTTTGTCGTTTGATTCATAGGA 57.803 34.615 0.00 0.00 33.64 2.94
5064 5240 7.630242 ATGTTTGTCGTTTGATTCATAGGAT 57.370 32.000 3.43 0.00 0.00 3.24
5065 5241 7.447374 TGTTTGTCGTTTGATTCATAGGATT 57.553 32.000 3.43 0.00 0.00 3.01
5066 5242 7.881142 TGTTTGTCGTTTGATTCATAGGATTT 58.119 30.769 3.43 0.00 0.00 2.17
5067 5243 9.004717 TGTTTGTCGTTTGATTCATAGGATTTA 57.995 29.630 3.43 0.00 0.00 1.40
5068 5244 9.834628 GTTTGTCGTTTGATTCATAGGATTTAA 57.165 29.630 3.43 0.00 0.00 1.52
5106 5282 9.444600 TTTTTCCTATGGAATCAAGTGTACTAC 57.555 33.333 0.00 0.00 41.71 2.73
5107 5283 7.727578 TTCCTATGGAATCAAGTGTACTACA 57.272 36.000 0.00 0.00 36.71 2.74
5108 5284 7.914427 TCCTATGGAATCAAGTGTACTACAT 57.086 36.000 0.00 0.00 0.00 2.29
5109 5285 8.319057 TCCTATGGAATCAAGTGTACTACATT 57.681 34.615 0.00 0.00 0.00 2.71
5110 5286 8.768397 TCCTATGGAATCAAGTGTACTACATTT 58.232 33.333 0.00 0.00 0.00 2.32
5111 5287 9.396022 CCTATGGAATCAAGTGTACTACATTTT 57.604 33.333 0.00 0.00 0.00 1.82
5130 5306 8.537728 ACATTTTATTGGAAATCTAGCATCCA 57.462 30.769 6.82 6.82 41.36 3.41
5131 5307 8.416329 ACATTTTATTGGAAATCTAGCATCCAC 58.584 33.333 9.63 0.00 42.71 4.02
5132 5308 8.636213 CATTTTATTGGAAATCTAGCATCCACT 58.364 33.333 9.63 7.92 42.71 4.00
5133 5309 7.807977 TTTATTGGAAATCTAGCATCCACTC 57.192 36.000 9.63 0.00 42.71 3.51
5134 5310 3.845781 TGGAAATCTAGCATCCACTCC 57.154 47.619 6.82 0.00 38.30 3.85
5135 5311 3.114606 TGGAAATCTAGCATCCACTCCA 58.885 45.455 6.82 0.00 38.30 3.86
5136 5312 3.523157 TGGAAATCTAGCATCCACTCCAA 59.477 43.478 6.82 0.00 38.30 3.53
5137 5313 3.879892 GGAAATCTAGCATCCACTCCAAC 59.120 47.826 4.08 0.00 33.30 3.77
5138 5314 3.567478 AATCTAGCATCCACTCCAACC 57.433 47.619 0.00 0.00 0.00 3.77
5139 5315 2.254152 TCTAGCATCCACTCCAACCT 57.746 50.000 0.00 0.00 0.00 3.50
5140 5316 2.111384 TCTAGCATCCACTCCAACCTC 58.889 52.381 0.00 0.00 0.00 3.85
5141 5317 2.114616 CTAGCATCCACTCCAACCTCT 58.885 52.381 0.00 0.00 0.00 3.69
5142 5318 1.366319 AGCATCCACTCCAACCTCTT 58.634 50.000 0.00 0.00 0.00 2.85
5143 5319 1.707427 AGCATCCACTCCAACCTCTTT 59.293 47.619 0.00 0.00 0.00 2.52
5144 5320 2.108952 AGCATCCACTCCAACCTCTTTT 59.891 45.455 0.00 0.00 0.00 2.27
5145 5321 2.893489 GCATCCACTCCAACCTCTTTTT 59.107 45.455 0.00 0.00 0.00 1.94
5177 5353 9.494271 TCCTTTATATCTCATGTAGCATCAAAC 57.506 33.333 0.00 0.00 0.00 2.93
5178 5354 9.276590 CCTTTATATCTCATGTAGCATCAAACA 57.723 33.333 0.00 0.00 0.00 2.83
5180 5356 9.836864 TTTATATCTCATGTAGCATCAAACACT 57.163 29.630 0.00 0.00 0.00 3.55
5181 5357 7.959689 ATATCTCATGTAGCATCAAACACTC 57.040 36.000 0.00 0.00 0.00 3.51
5182 5358 4.176271 TCTCATGTAGCATCAAACACTCG 58.824 43.478 0.00 0.00 0.00 4.18
5183 5359 4.082245 TCTCATGTAGCATCAAACACTCGA 60.082 41.667 0.00 0.00 0.00 4.04
5184 5360 4.758688 TCATGTAGCATCAAACACTCGAT 58.241 39.130 0.00 0.00 0.00 3.59
5185 5361 4.567959 TCATGTAGCATCAAACACTCGATG 59.432 41.667 0.00 0.00 41.62 3.84
5192 5368 5.088141 CATCAAACACTCGATGCTAATCC 57.912 43.478 0.00 0.00 33.19 3.01
5193 5369 4.471904 TCAAACACTCGATGCTAATCCT 57.528 40.909 0.00 0.00 0.00 3.24
5194 5370 5.592104 TCAAACACTCGATGCTAATCCTA 57.408 39.130 0.00 0.00 0.00 2.94
5195 5371 6.161855 TCAAACACTCGATGCTAATCCTAT 57.838 37.500 0.00 0.00 0.00 2.57
5196 5372 7.284919 TCAAACACTCGATGCTAATCCTATA 57.715 36.000 0.00 0.00 0.00 1.31
5197 5373 7.371159 TCAAACACTCGATGCTAATCCTATAG 58.629 38.462 0.00 0.00 0.00 1.31
5198 5374 5.906113 ACACTCGATGCTAATCCTATAGG 57.094 43.478 13.07 13.07 0.00 2.57
5213 5389 6.425210 TCCTATAGGATTCAAGTGGACATG 57.575 41.667 18.00 0.00 39.78 3.21
5214 5390 4.999950 CCTATAGGATTCAAGTGGACATGC 59.000 45.833 14.11 0.00 37.39 4.06
5215 5391 2.134789 AGGATTCAAGTGGACATGCC 57.865 50.000 0.00 0.00 37.10 4.40
5216 5392 1.355381 AGGATTCAAGTGGACATGCCA 59.645 47.619 4.93 4.93 46.96 4.92
5225 5401 1.838112 TGGACATGCCACTCAAATCC 58.162 50.000 4.93 0.00 43.33 3.01
5226 5402 1.355381 TGGACATGCCACTCAAATCCT 59.645 47.619 4.93 0.00 43.33 3.24
5227 5403 2.575735 TGGACATGCCACTCAAATCCTA 59.424 45.455 4.93 0.00 43.33 2.94
5228 5404 3.202818 TGGACATGCCACTCAAATCCTAT 59.797 43.478 4.93 0.00 43.33 2.57
5229 5405 4.411869 TGGACATGCCACTCAAATCCTATA 59.588 41.667 4.93 0.00 43.33 1.31
5230 5406 5.073554 TGGACATGCCACTCAAATCCTATAT 59.926 40.000 4.93 0.00 43.33 0.86
5231 5407 6.006449 GGACATGCCACTCAAATCCTATATT 58.994 40.000 0.00 0.00 36.34 1.28
5232 5408 6.491403 GGACATGCCACTCAAATCCTATATTT 59.509 38.462 0.00 0.00 36.34 1.40
5233 5409 7.014615 GGACATGCCACTCAAATCCTATATTTT 59.985 37.037 0.00 0.00 36.34 1.82
5234 5410 8.310122 ACATGCCACTCAAATCCTATATTTTT 57.690 30.769 0.00 0.00 0.00 1.94
5235 5411 8.416329 ACATGCCACTCAAATCCTATATTTTTC 58.584 33.333 0.00 0.00 0.00 2.29
5236 5412 7.346751 TGCCACTCAAATCCTATATTTTTCC 57.653 36.000 0.00 0.00 0.00 3.13
5237 5413 7.125391 TGCCACTCAAATCCTATATTTTTCCT 58.875 34.615 0.00 0.00 0.00 3.36
5238 5414 8.278639 TGCCACTCAAATCCTATATTTTTCCTA 58.721 33.333 0.00 0.00 0.00 2.94
5239 5415 9.301897 GCCACTCAAATCCTATATTTTTCCTAT 57.698 33.333 0.00 0.00 0.00 2.57
5244 5420 9.515226 TCAAATCCTATATTTTTCCTATTCCCG 57.485 33.333 0.00 0.00 0.00 5.14
5245 5421 9.297037 CAAATCCTATATTTTTCCTATTCCCGT 57.703 33.333 0.00 0.00 0.00 5.28
5246 5422 8.863872 AATCCTATATTTTTCCTATTCCCGTG 57.136 34.615 0.00 0.00 0.00 4.94
5247 5423 7.383156 TCCTATATTTTTCCTATTCCCGTGT 57.617 36.000 0.00 0.00 0.00 4.49
5248 5424 7.808218 TCCTATATTTTTCCTATTCCCGTGTT 58.192 34.615 0.00 0.00 0.00 3.32
5249 5425 8.276477 TCCTATATTTTTCCTATTCCCGTGTTT 58.724 33.333 0.00 0.00 0.00 2.83
5250 5426 8.909923 CCTATATTTTTCCTATTCCCGTGTTTT 58.090 33.333 0.00 0.00 0.00 2.43
5251 5427 9.730420 CTATATTTTTCCTATTCCCGTGTTTTG 57.270 33.333 0.00 0.00 0.00 2.44
5252 5428 6.658188 ATTTTTCCTATTCCCGTGTTTTGA 57.342 33.333 0.00 0.00 0.00 2.69
5253 5429 6.466885 TTTTTCCTATTCCCGTGTTTTGAA 57.533 33.333 0.00 0.00 0.00 2.69
5254 5430 6.466885 TTTTCCTATTCCCGTGTTTTGAAA 57.533 33.333 0.00 0.00 0.00 2.69
5255 5431 6.466885 TTTCCTATTCCCGTGTTTTGAAAA 57.533 33.333 0.00 0.00 0.00 2.29
5256 5432 6.658188 TTCCTATTCCCGTGTTTTGAAAAT 57.342 33.333 0.00 0.00 0.00 1.82
5257 5433 6.262193 TCCTATTCCCGTGTTTTGAAAATC 57.738 37.500 0.00 0.00 0.00 2.17
5258 5434 5.184287 TCCTATTCCCGTGTTTTGAAAATCC 59.816 40.000 0.00 0.00 0.00 3.01
5259 5435 5.185056 CCTATTCCCGTGTTTTGAAAATCCT 59.815 40.000 0.00 0.00 0.00 3.24
5260 5436 4.314740 TTCCCGTGTTTTGAAAATCCTG 57.685 40.909 0.00 0.00 0.00 3.86
5261 5437 2.035321 TCCCGTGTTTTGAAAATCCTGC 59.965 45.455 0.00 0.00 0.00 4.85
5262 5438 2.223923 CCCGTGTTTTGAAAATCCTGCA 60.224 45.455 0.00 0.00 0.00 4.41
5263 5439 3.452474 CCGTGTTTTGAAAATCCTGCAA 58.548 40.909 0.00 0.00 0.00 4.08
5264 5440 3.868077 CCGTGTTTTGAAAATCCTGCAAA 59.132 39.130 0.00 0.00 0.00 3.68
5265 5441 4.511082 CCGTGTTTTGAAAATCCTGCAAAT 59.489 37.500 0.00 0.00 32.27 2.32
5266 5442 5.333263 CCGTGTTTTGAAAATCCTGCAAATC 60.333 40.000 0.00 0.00 32.27 2.17
5267 5443 5.233902 CGTGTTTTGAAAATCCTGCAAATCA 59.766 36.000 0.00 0.00 32.27 2.57
5268 5444 6.238049 CGTGTTTTGAAAATCCTGCAAATCAA 60.238 34.615 0.00 0.00 34.76 2.57
5269 5445 7.470900 GTGTTTTGAAAATCCTGCAAATCAAA 58.529 30.769 0.00 0.00 34.76 2.69
5270 5446 7.641020 GTGTTTTGAAAATCCTGCAAATCAAAG 59.359 33.333 0.00 0.00 37.86 2.77
5271 5447 7.551974 TGTTTTGAAAATCCTGCAAATCAAAGA 59.448 29.630 0.00 0.00 37.86 2.52
5272 5448 8.562052 GTTTTGAAAATCCTGCAAATCAAAGAT 58.438 29.630 0.00 0.00 37.86 2.40
5273 5449 7.661127 TTGAAAATCCTGCAAATCAAAGATG 57.339 32.000 0.00 0.00 0.00 2.90
5274 5450 6.167685 TGAAAATCCTGCAAATCAAAGATGG 58.832 36.000 0.00 0.00 0.00 3.51
5275 5451 3.814005 ATCCTGCAAATCAAAGATGGC 57.186 42.857 0.00 0.00 0.00 4.40
5276 5452 1.826720 TCCTGCAAATCAAAGATGGCC 59.173 47.619 0.00 0.00 0.00 5.36
5277 5453 1.829222 CCTGCAAATCAAAGATGGCCT 59.171 47.619 3.32 0.00 0.00 5.19
5278 5454 2.235402 CCTGCAAATCAAAGATGGCCTT 59.765 45.455 3.32 0.00 36.47 4.35
5287 5463 2.429610 CAAAGATGGCCTTAGCTTGCAT 59.570 45.455 3.32 0.00 39.73 3.96
5293 5469 2.368221 TGGCCTTAGCTTGCATGTTTTT 59.632 40.909 3.32 0.00 39.73 1.94
5335 5512 7.148355 TCCGAAGCTATTCCGTTTTAAAAAT 57.852 32.000 1.31 0.00 31.21 1.82
5377 5554 3.191162 TGGAATGTTCTTTCTGCGAATGG 59.809 43.478 0.00 0.00 0.00 3.16
5379 5556 4.406943 GAATGTTCTTTCTGCGAATGGAC 58.593 43.478 0.00 7.96 0.00 4.02
5380 5557 2.151202 TGTTCTTTCTGCGAATGGACC 58.849 47.619 10.73 0.00 0.00 4.46
5386 5563 2.672961 TCTGCGAATGGACCTGTTAG 57.327 50.000 0.00 0.00 0.00 2.34
5406 5583 2.434331 TCCTGTTTGGAAGGCGGG 59.566 61.111 0.00 0.00 42.94 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.986587 CGTCGTTCGGTGTCGGCA 62.987 66.667 0.00 0.00 36.95 5.69
28 29 2.604174 CCGTGCGGTTGTCCTTGAC 61.604 63.158 1.93 0.00 0.00 3.18
67 69 4.704103 TCCTCCACCGCAGCTCCT 62.704 66.667 0.00 0.00 0.00 3.69
91 93 0.107017 AAGGGGATGATGAAGTGGCG 60.107 55.000 0.00 0.00 0.00 5.69
137 140 3.119709 CTCCTCTCCTCGCTGTCGC 62.120 68.421 0.00 0.00 35.26 5.19
140 143 3.137459 CGCTCCTCTCCTCGCTGT 61.137 66.667 0.00 0.00 0.00 4.40
163 166 1.304962 TGGTCTAGGGCTTCGAGCA 60.305 57.895 0.00 0.00 44.75 4.26
194 197 0.990818 ATCTCCTTCTTCCTGCCCCC 60.991 60.000 0.00 0.00 0.00 5.40
196 199 0.105778 CGATCTCCTTCTTCCTGCCC 59.894 60.000 0.00 0.00 0.00 5.36
198 201 0.105778 CCCGATCTCCTTCTTCCTGC 59.894 60.000 0.00 0.00 0.00 4.85
221 225 1.960689 CCCCTTCCTCTCGATCTTCTC 59.039 57.143 0.00 0.00 0.00 2.87
224 228 0.340208 ACCCCCTTCCTCTCGATCTT 59.660 55.000 0.00 0.00 0.00 2.40
225 229 0.105913 GACCCCCTTCCTCTCGATCT 60.106 60.000 0.00 0.00 0.00 2.75
227 231 1.455959 CGACCCCCTTCCTCTCGAT 60.456 63.158 0.00 0.00 0.00 3.59
229 233 2.044252 TCGACCCCCTTCCTCTCG 60.044 66.667 0.00 0.00 0.00 4.04
232 236 0.324460 TTCTCTCGACCCCCTTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
233 237 0.324830 CTTCTCTCGACCCCCTTCCT 60.325 60.000 0.00 0.00 0.00 3.36
234 238 1.331399 CCTTCTCTCGACCCCCTTCC 61.331 65.000 0.00 0.00 0.00 3.46
235 239 1.331399 CCCTTCTCTCGACCCCCTTC 61.331 65.000 0.00 0.00 0.00 3.46
236 240 1.306226 CCCTTCTCTCGACCCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
237 241 2.364961 CCCTTCTCTCGACCCCCT 59.635 66.667 0.00 0.00 0.00 4.79
238 242 2.039137 ACCCTTCTCTCGACCCCC 59.961 66.667 0.00 0.00 0.00 5.40
239 243 2.359967 CCACCCTTCTCTCGACCCC 61.360 68.421 0.00 0.00 0.00 4.95
240 244 3.020237 GCCACCCTTCTCTCGACCC 62.020 68.421 0.00 0.00 0.00 4.46
241 245 2.579738 GCCACCCTTCTCTCGACC 59.420 66.667 0.00 0.00 0.00 4.79
242 246 2.182030 CGCCACCCTTCTCTCGAC 59.818 66.667 0.00 0.00 0.00 4.20
243 247 3.068691 CCGCCACCCTTCTCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
244 248 4.821589 GCCGCCACCCTTCTCTCG 62.822 72.222 0.00 0.00 0.00 4.04
245 249 4.821589 CGCCGCCACCCTTCTCTC 62.822 72.222 0.00 0.00 0.00 3.20
274 278 4.336889 TTGACGAACAACTCATCTCCTT 57.663 40.909 0.00 0.00 33.18 3.36
285 289 6.671614 AACTATTGTGAAGTTGACGAACAA 57.328 33.333 0.00 0.00 35.87 2.83
297 301 8.875803 GTTGGATTATCGTACAACTATTGTGAA 58.124 33.333 4.46 0.00 45.03 3.18
304 308 6.814644 CAGGTTGTTGGATTATCGTACAACTA 59.185 38.462 25.52 13.19 44.77 2.24
350 357 6.384224 CCAAATCCATCATGATTGAATACCG 58.616 40.000 13.03 0.00 35.21 4.02
355 362 5.395879 CCAAGCCAAATCCATCATGATTGAA 60.396 40.000 13.03 0.00 35.21 2.69
409 416 2.420642 GCTGTGTGATTCAGAGAAGCA 58.579 47.619 11.48 0.00 39.43 3.91
429 436 1.549170 AGCCAAGTTACACGGTAGAGG 59.451 52.381 0.00 0.00 0.00 3.69
448 455 8.033626 TCTCATAAGATATGCAATGCTCTGTAG 58.966 37.037 6.82 0.00 0.00 2.74
449 456 7.816513 GTCTCATAAGATATGCAATGCTCTGTA 59.183 37.037 6.82 0.00 33.08 2.74
450 457 6.649973 GTCTCATAAGATATGCAATGCTCTGT 59.350 38.462 6.82 0.00 33.08 3.41
451 458 6.649557 TGTCTCATAAGATATGCAATGCTCTG 59.350 38.462 6.82 0.00 33.08 3.35
452 459 6.649973 GTGTCTCATAAGATATGCAATGCTCT 59.350 38.462 6.82 0.00 33.08 4.09
453 460 6.426025 TGTGTCTCATAAGATATGCAATGCTC 59.574 38.462 6.82 0.00 33.08 4.26
454 461 6.293698 TGTGTCTCATAAGATATGCAATGCT 58.706 36.000 6.82 0.00 33.08 3.79
455 462 6.549912 TGTGTCTCATAAGATATGCAATGC 57.450 37.500 0.00 0.00 33.08 3.56
456 463 7.021790 GCATGTGTCTCATAAGATATGCAATG 58.978 38.462 0.00 0.00 41.21 2.82
457 464 6.713450 TGCATGTGTCTCATAAGATATGCAAT 59.287 34.615 11.01 0.00 44.29 3.56
458 465 6.056884 TGCATGTGTCTCATAAGATATGCAA 58.943 36.000 11.01 0.04 44.29 4.08
472 479 2.229792 ACCATCGTTTTGCATGTGTCT 58.770 42.857 0.00 0.00 0.00 3.41
515 522 3.306780 CCCAAGTACTCAAGATTCACCGT 60.307 47.826 0.00 0.00 0.00 4.83
516 523 3.262420 CCCAAGTACTCAAGATTCACCG 58.738 50.000 0.00 0.00 0.00 4.94
526 533 1.301401 GCGCACACCCAAGTACTCA 60.301 57.895 0.30 0.00 0.00 3.41
546 553 3.063997 AGGAATGCTCGTGCTTATTTTCG 59.936 43.478 11.19 0.00 40.48 3.46
555 562 0.881118 TTTTGGAGGAATGCTCGTGC 59.119 50.000 1.71 1.71 40.20 5.34
564 571 2.894126 TGCGGCTTTTATTTTGGAGGAA 59.106 40.909 0.00 0.00 0.00 3.36
567 574 5.665381 TTTTTGCGGCTTTTATTTTGGAG 57.335 34.783 0.00 0.00 0.00 3.86
592 599 6.713792 AACGCACTGTAAAATTTGTGTTTT 57.286 29.167 7.85 0.00 39.11 2.43
594 601 5.003967 CGAAACGCACTGTAAAATTTGTGTT 59.996 36.000 7.85 4.08 42.87 3.32
597 604 4.039032 CCGAAACGCACTGTAAAATTTGT 58.961 39.130 0.00 0.00 0.00 2.83
601 608 2.614983 ACACCGAAACGCACTGTAAAAT 59.385 40.909 0.00 0.00 0.00 1.82
608 615 0.745128 TTTGGACACCGAAACGCACT 60.745 50.000 0.00 0.00 0.00 4.40
612 619 3.437395 TGGATTATTTGGACACCGAAACG 59.563 43.478 0.00 0.00 29.81 3.60
617 624 6.645700 CAAATTTGGATTATTTGGACACCG 57.354 37.500 10.49 0.00 38.64 4.94
759 768 7.913821 CCTTTAACGATATCAAAAAGTTAGGCC 59.086 37.037 15.10 0.00 0.00 5.19
763 772 9.005777 AGTGCCTTTAACGATATCAAAAAGTTA 57.994 29.630 15.10 7.82 0.00 2.24
1239 1259 1.251251 GCAACCAGGAATGAGCAACT 58.749 50.000 0.00 0.00 0.00 3.16
1358 1382 1.377725 CAGCAACCGGATCAGCCTT 60.378 57.895 9.46 0.00 0.00 4.35
1386 1410 4.225340 CGTCTCGTCTCCTCCGCG 62.225 72.222 0.00 0.00 0.00 6.46
1406 1430 5.066893 ACAAAGATCCGATCCATCACAAATG 59.933 40.000 4.67 0.00 0.00 2.32
1407 1431 5.195940 ACAAAGATCCGATCCATCACAAAT 58.804 37.500 4.67 0.00 0.00 2.32
1427 1501 2.230025 GCTGCAGTAGAGACAGAGACAA 59.770 50.000 16.64 0.00 33.10 3.18
1437 1511 0.179161 ACGCTTACGCTGCAGTAGAG 60.179 55.000 16.64 11.61 45.53 2.43
1441 1515 0.234884 GAAAACGCTTACGCTGCAGT 59.765 50.000 16.64 0.00 45.53 4.40
1516 1592 3.165058 TGCTACCGCAAGTATGAGAAG 57.835 47.619 0.00 0.00 44.62 2.85
1531 1607 5.986004 ATTGTAGGATAAACGCTTGCTAC 57.014 39.130 0.00 0.00 37.31 3.58
1534 1610 5.229921 TGAATTGTAGGATAAACGCTTGC 57.770 39.130 0.00 0.00 0.00 4.01
1550 1626 9.856488 AAGAATGAGACTCATTTTGATGAATTG 57.144 29.630 27.28 0.00 46.20 2.32
1575 1651 7.544566 CGGCTTTAGAAAACTGATAGTAGTCAA 59.455 37.037 0.00 0.00 0.00 3.18
1638 1714 0.178987 AATGTACCCAAACGCCCACA 60.179 50.000 0.00 0.00 0.00 4.17
1918 1995 0.106868 CATGGCCTGCAGATTGGAGA 60.107 55.000 17.39 0.00 38.14 3.71
1919 1996 2.415825 CATGGCCTGCAGATTGGAG 58.584 57.895 17.39 0.00 35.43 3.86
1965 2045 2.777832 AGGCATCTTGAGAAGTGTCC 57.222 50.000 0.00 0.00 0.00 4.02
2001 2081 3.742433 AGTGGAAGAAGATGCTATCCG 57.258 47.619 0.00 0.00 32.72 4.18
2080 2160 1.314730 TTGAGTTGGGCCGAAGAAAC 58.685 50.000 0.00 0.00 0.00 2.78
2087 2167 4.638421 TCTTGTTAATATTGAGTTGGGCCG 59.362 41.667 0.00 0.00 0.00 6.13
2102 2182 8.740123 TCTTGGAGTGTTGTTAATCTTGTTAA 57.260 30.769 0.00 0.00 0.00 2.01
2150 2232 3.630769 ACATACAGAAATGCCAGCATCAG 59.369 43.478 5.44 0.00 35.31 2.90
2159 2241 8.853345 CACTTGAATTTGTACATACAGAAATGC 58.147 33.333 0.00 0.00 37.52 3.56
2210 2292 4.400529 ACAAAGCGGGTTTTCAATCTTT 57.599 36.364 1.81 0.00 0.00 2.52
2252 2334 8.814038 ATTATGAAAGCACTCCAGAACTAATT 57.186 30.769 0.00 0.00 0.00 1.40
2284 2366 8.976986 AAAGAATTCATCAGTTTAAGCACATC 57.023 30.769 8.44 0.00 0.00 3.06
2302 2388 7.772757 TGCAAACCAGGATAAACAAAAAGAATT 59.227 29.630 0.00 0.00 0.00 2.17
2316 2451 0.540365 CACCCACTGCAAACCAGGAT 60.540 55.000 0.00 0.00 46.14 3.24
2322 2457 2.488153 GAGGATAACACCCACTGCAAAC 59.512 50.000 0.00 0.00 0.00 2.93
2336 2471 7.112779 GGGAAGTTGATCTCTTTTGAGGATAA 58.887 38.462 0.00 0.00 46.22 1.75
2495 2630 8.999431 TGAATTCCAAACAGTATGAAGTCTTAC 58.001 33.333 2.27 0.00 39.69 2.34
2858 2995 4.728772 TGTCTGATGAAAACCAACCTCAT 58.271 39.130 0.00 0.00 32.49 2.90
2880 3017 8.482943 TGTTACTGTACTTGCTATCCACATATT 58.517 33.333 0.00 0.00 0.00 1.28
2957 3094 5.401531 TGGTAAAACTCGCTCACTAATCT 57.598 39.130 0.00 0.00 0.00 2.40
3038 3175 5.363101 TGATGACCATCATGCTAGACTTTC 58.637 41.667 8.49 0.00 42.42 2.62
3418 3555 8.826765 ACCTTCTCAATCTAAAACCAGAGATTA 58.173 33.333 0.00 0.00 39.79 1.75
3420 3557 7.038017 TGACCTTCTCAATCTAAAACCAGAGAT 60.038 37.037 0.00 0.00 32.76 2.75
3445 3582 2.613691 ACCGATTACAACCTACGCTTG 58.386 47.619 0.00 0.00 0.00 4.01
3463 3600 7.593825 AGTACATTAGCATCAGTTTCAAAACC 58.406 34.615 0.00 0.00 39.71 3.27
3470 3607 6.656693 AGCAAAGAGTACATTAGCATCAGTTT 59.343 34.615 0.00 0.00 0.00 2.66
3518 3655 2.297701 GCTGTTCCAAGGAGAAACACA 58.702 47.619 0.00 0.00 0.00 3.72
3548 3685 7.359514 GCAAGCATTTTACAGTTCATTTCTTCC 60.360 37.037 0.00 0.00 0.00 3.46
3650 3787 5.073554 TGCAATAACTCCACCCATCTGATAT 59.926 40.000 0.00 0.00 0.00 1.63
3669 3806 3.728385 AAGTCTAAGGGCTTCTGCAAT 57.272 42.857 0.00 0.00 41.91 3.56
3671 3808 4.033709 AGATAAGTCTAAGGGCTTCTGCA 58.966 43.478 0.00 0.00 35.11 4.41
3674 3811 7.506261 TCGATAAAGATAAGTCTAAGGGCTTCT 59.494 37.037 0.00 0.00 33.30 2.85
3822 3959 8.801299 TGCAGGAAAATCACAGATTAAATTACA 58.199 29.630 0.00 0.00 0.00 2.41
4168 4305 6.549433 AAAATGTGCCCAAAGATATCACAT 57.451 33.333 5.32 1.98 46.56 3.21
4625 4766 2.228822 CTGGCCAACTCGTAGCAAAATT 59.771 45.455 7.01 0.00 0.00 1.82
4782 4924 6.037172 AGACAACAAACACATCTACACAACTC 59.963 38.462 0.00 0.00 0.00 3.01
4783 4925 5.880332 AGACAACAAACACATCTACACAACT 59.120 36.000 0.00 0.00 0.00 3.16
4835 4988 2.664402 ACCAACAGAATCAGGTTGCT 57.336 45.000 10.89 0.00 42.26 3.91
4874 5027 1.071471 CCGTCTTGTTGGCAGGACT 59.929 57.895 7.94 0.00 45.86 3.85
4890 5043 6.863645 CAGACATACTTCATATACAAGGTCCG 59.136 42.308 0.00 0.00 0.00 4.79
4979 5155 9.194101 ATCCCACGGAATTCCTTTGAATCAAAG 62.194 40.741 24.53 24.53 41.67 2.77
4980 5156 4.021544 CCCACGGAATTCCTTTGAATCAAA 60.022 41.667 22.05 8.25 40.34 2.69
4981 5157 3.509575 CCCACGGAATTCCTTTGAATCAA 59.490 43.478 22.05 0.00 40.34 2.57
4982 5158 3.088532 CCCACGGAATTCCTTTGAATCA 58.911 45.455 22.05 0.00 40.34 2.57
4983 5159 3.352648 TCCCACGGAATTCCTTTGAATC 58.647 45.455 22.05 0.00 40.34 2.52
4984 5160 3.449746 TCCCACGGAATTCCTTTGAAT 57.550 42.857 22.05 0.00 43.08 2.57
4985 5161 2.961531 TCCCACGGAATTCCTTTGAA 57.038 45.000 22.05 8.05 34.33 2.69
4986 5162 3.449746 AATCCCACGGAATTCCTTTGA 57.550 42.857 22.05 11.84 34.34 2.69
4987 5163 4.535526 AAAATCCCACGGAATTCCTTTG 57.464 40.909 22.05 17.34 34.34 2.77
4988 5164 4.262851 CCAAAAATCCCACGGAATTCCTTT 60.263 41.667 22.05 11.49 34.34 3.11
4989 5165 3.260632 CCAAAAATCCCACGGAATTCCTT 59.739 43.478 22.05 10.52 34.34 3.36
4990 5166 2.831526 CCAAAAATCCCACGGAATTCCT 59.168 45.455 22.05 6.76 34.34 3.36
4991 5167 2.829120 TCCAAAAATCCCACGGAATTCC 59.171 45.455 15.01 15.01 34.34 3.01
4992 5168 3.119137 CCTCCAAAAATCCCACGGAATTC 60.119 47.826 0.00 0.00 34.34 2.17
4993 5169 2.831526 CCTCCAAAAATCCCACGGAATT 59.168 45.455 0.00 0.00 34.34 2.17
4994 5170 2.456577 CCTCCAAAAATCCCACGGAAT 58.543 47.619 0.00 0.00 34.34 3.01
4995 5171 1.549037 CCCTCCAAAAATCCCACGGAA 60.549 52.381 0.00 0.00 34.34 4.30
4996 5172 0.039035 CCCTCCAAAAATCCCACGGA 59.961 55.000 0.00 0.00 35.55 4.69
4997 5173 0.251608 ACCCTCCAAAAATCCCACGG 60.252 55.000 0.00 0.00 0.00 4.94
4998 5174 1.627864 AACCCTCCAAAAATCCCACG 58.372 50.000 0.00 0.00 0.00 4.94
4999 5175 4.042271 TCTAACCCTCCAAAAATCCCAC 57.958 45.455 0.00 0.00 0.00 4.61
5000 5176 4.750833 TTCTAACCCTCCAAAAATCCCA 57.249 40.909 0.00 0.00 0.00 4.37
5001 5177 4.649674 GGATTCTAACCCTCCAAAAATCCC 59.350 45.833 0.00 0.00 36.33 3.85
5002 5178 5.519808 AGGATTCTAACCCTCCAAAAATCC 58.480 41.667 0.00 0.00 40.50 3.01
5003 5179 7.285629 CCTAAGGATTCTAACCCTCCAAAAATC 59.714 40.741 0.00 0.00 31.17 2.17
5004 5180 7.036132 TCCTAAGGATTCTAACCCTCCAAAAAT 60.036 37.037 0.00 0.00 31.17 1.82
5005 5181 6.276092 TCCTAAGGATTCTAACCCTCCAAAAA 59.724 38.462 0.00 0.00 31.17 1.94
5006 5182 5.793763 TCCTAAGGATTCTAACCCTCCAAAA 59.206 40.000 0.00 0.00 31.17 2.44
5007 5183 5.355711 TCCTAAGGATTCTAACCCTCCAAA 58.644 41.667 0.00 0.00 31.17 3.28
5008 5184 4.967871 TCCTAAGGATTCTAACCCTCCAA 58.032 43.478 0.00 0.00 31.17 3.53
5009 5185 4.637288 TCCTAAGGATTCTAACCCTCCA 57.363 45.455 0.00 0.00 31.17 3.86
5032 5208 8.191446 TGAATCAAACGACAAACATAGGAAAAA 58.809 29.630 0.00 0.00 0.00 1.94
5033 5209 7.708051 TGAATCAAACGACAAACATAGGAAAA 58.292 30.769 0.00 0.00 0.00 2.29
5034 5210 7.265647 TGAATCAAACGACAAACATAGGAAA 57.734 32.000 0.00 0.00 0.00 3.13
5035 5211 6.869315 TGAATCAAACGACAAACATAGGAA 57.131 33.333 0.00 0.00 0.00 3.36
5036 5212 8.196802 CTATGAATCAAACGACAAACATAGGA 57.803 34.615 0.00 0.00 35.09 2.94
5037 5213 7.409697 CCTATGAATCAAACGACAAACATAGG 58.590 38.462 0.33 0.33 44.75 2.57
5038 5214 8.196802 TCCTATGAATCAAACGACAAACATAG 57.803 34.615 0.00 0.00 37.06 2.23
5039 5215 8.731275 ATCCTATGAATCAAACGACAAACATA 57.269 30.769 0.00 0.00 0.00 2.29
5040 5216 7.630242 ATCCTATGAATCAAACGACAAACAT 57.370 32.000 0.00 0.00 0.00 2.71
5041 5217 7.447374 AATCCTATGAATCAAACGACAAACA 57.553 32.000 0.00 0.00 0.00 2.83
5042 5218 9.834628 TTAAATCCTATGAATCAAACGACAAAC 57.165 29.630 0.00 0.00 0.00 2.93
5045 5221 8.836413 GGATTAAATCCTATGAATCAAACGACA 58.164 33.333 0.00 0.00 46.19 4.35
5080 5256 9.444600 GTAGTACACTTGATTCCATAGGAAAAA 57.555 33.333 2.16 0.62 45.41 1.94
5081 5257 8.598916 TGTAGTACACTTGATTCCATAGGAAAA 58.401 33.333 0.00 0.00 45.41 2.29
5082 5258 8.141298 TGTAGTACACTTGATTCCATAGGAAA 57.859 34.615 0.00 0.00 45.41 3.13
5083 5259 7.727578 TGTAGTACACTTGATTCCATAGGAA 57.272 36.000 0.00 0.30 46.39 3.36
5084 5260 7.914427 ATGTAGTACACTTGATTCCATAGGA 57.086 36.000 4.80 0.00 0.00 2.94
5085 5261 8.964476 AAATGTAGTACACTTGATTCCATAGG 57.036 34.615 4.80 0.00 0.00 2.57
5104 5280 9.639563 TGGATGCTAGATTTCCAATAAAATGTA 57.360 29.630 0.00 0.00 36.62 2.29
5105 5281 8.416329 GTGGATGCTAGATTTCCAATAAAATGT 58.584 33.333 9.52 0.00 41.05 2.71
5106 5282 8.636213 AGTGGATGCTAGATTTCCAATAAAATG 58.364 33.333 9.52 0.00 41.05 2.32
5107 5283 8.773033 AGTGGATGCTAGATTTCCAATAAAAT 57.227 30.769 9.52 0.00 41.05 1.82
5108 5284 7.285401 GGAGTGGATGCTAGATTTCCAATAAAA 59.715 37.037 9.52 0.00 41.05 1.52
5109 5285 6.772716 GGAGTGGATGCTAGATTTCCAATAAA 59.227 38.462 9.52 0.00 41.05 1.40
5110 5286 6.126507 TGGAGTGGATGCTAGATTTCCAATAA 60.127 38.462 9.52 0.89 41.05 1.40
5111 5287 5.369404 TGGAGTGGATGCTAGATTTCCAATA 59.631 40.000 9.52 0.00 41.05 1.90
5112 5288 4.166725 TGGAGTGGATGCTAGATTTCCAAT 59.833 41.667 9.52 8.87 41.05 3.16
5113 5289 3.523157 TGGAGTGGATGCTAGATTTCCAA 59.477 43.478 9.52 0.00 41.05 3.53
5114 5290 3.114606 TGGAGTGGATGCTAGATTTCCA 58.885 45.455 0.00 0.00 37.20 3.53
5115 5291 3.845781 TGGAGTGGATGCTAGATTTCC 57.154 47.619 0.00 0.00 0.00 3.13
5116 5292 3.879892 GGTTGGAGTGGATGCTAGATTTC 59.120 47.826 0.00 0.00 0.00 2.17
5117 5293 3.525199 AGGTTGGAGTGGATGCTAGATTT 59.475 43.478 0.00 0.00 0.00 2.17
5118 5294 3.118531 AGGTTGGAGTGGATGCTAGATT 58.881 45.455 0.00 0.00 0.00 2.40
5119 5295 2.703007 GAGGTTGGAGTGGATGCTAGAT 59.297 50.000 0.00 0.00 0.00 1.98
5120 5296 2.111384 GAGGTTGGAGTGGATGCTAGA 58.889 52.381 0.00 0.00 0.00 2.43
5121 5297 2.114616 AGAGGTTGGAGTGGATGCTAG 58.885 52.381 0.00 0.00 0.00 3.42
5122 5298 2.254152 AGAGGTTGGAGTGGATGCTA 57.746 50.000 0.00 0.00 0.00 3.49
5123 5299 1.366319 AAGAGGTTGGAGTGGATGCT 58.634 50.000 0.00 0.00 0.00 3.79
5124 5300 2.206576 AAAGAGGTTGGAGTGGATGC 57.793 50.000 0.00 0.00 0.00 3.91
5151 5327 9.494271 GTTTGATGCTACATGAGATATAAAGGA 57.506 33.333 0.00 0.00 0.00 3.36
5152 5328 9.276590 TGTTTGATGCTACATGAGATATAAAGG 57.723 33.333 0.00 0.00 0.00 3.11
5154 5330 9.836864 AGTGTTTGATGCTACATGAGATATAAA 57.163 29.630 0.00 0.00 0.00 1.40
5155 5331 9.481340 GAGTGTTTGATGCTACATGAGATATAA 57.519 33.333 0.00 0.00 0.00 0.98
5156 5332 7.809806 CGAGTGTTTGATGCTACATGAGATATA 59.190 37.037 0.00 0.00 0.00 0.86
5157 5333 6.644181 CGAGTGTTTGATGCTACATGAGATAT 59.356 38.462 0.00 0.00 0.00 1.63
5158 5334 5.979517 CGAGTGTTTGATGCTACATGAGATA 59.020 40.000 0.00 0.00 0.00 1.98
5159 5335 4.807834 CGAGTGTTTGATGCTACATGAGAT 59.192 41.667 0.00 0.00 0.00 2.75
5160 5336 4.082245 TCGAGTGTTTGATGCTACATGAGA 60.082 41.667 0.00 0.00 0.00 3.27
5161 5337 4.176271 TCGAGTGTTTGATGCTACATGAG 58.824 43.478 0.00 0.00 0.00 2.90
5162 5338 4.186856 TCGAGTGTTTGATGCTACATGA 57.813 40.909 0.00 0.00 0.00 3.07
5163 5339 4.829808 CATCGAGTGTTTGATGCTACATG 58.170 43.478 0.00 0.00 38.15 3.21
5170 5346 4.813161 AGGATTAGCATCGAGTGTTTGATG 59.187 41.667 0.00 1.25 44.75 3.07
5171 5347 5.028549 AGGATTAGCATCGAGTGTTTGAT 57.971 39.130 0.00 0.00 0.00 2.57
5172 5348 4.471904 AGGATTAGCATCGAGTGTTTGA 57.528 40.909 0.00 0.00 0.00 2.69
5173 5349 6.587990 CCTATAGGATTAGCATCGAGTGTTTG 59.412 42.308 14.11 0.00 37.39 2.93
5174 5350 6.493802 TCCTATAGGATTAGCATCGAGTGTTT 59.506 38.462 18.00 0.00 39.78 2.83
5175 5351 6.010850 TCCTATAGGATTAGCATCGAGTGTT 58.989 40.000 18.00 0.00 39.78 3.32
5176 5352 5.571285 TCCTATAGGATTAGCATCGAGTGT 58.429 41.667 18.00 0.00 39.78 3.55
5189 5365 9.380119 GGCATGTCCACTTGAATCCTATAGGAT 62.380 44.444 26.04 26.04 45.17 3.24
5190 5366 8.157082 GGCATGTCCACTTGAATCCTATAGGA 62.157 46.154 23.76 23.76 41.05 2.94
5191 5367 4.999950 GCATGTCCACTTGAATCCTATAGG 59.000 45.833 13.07 13.07 0.00 2.57
5192 5368 4.999950 GGCATGTCCACTTGAATCCTATAG 59.000 45.833 0.00 0.00 34.01 1.31
5193 5369 4.411869 TGGCATGTCCACTTGAATCCTATA 59.588 41.667 4.93 0.00 40.72 1.31
5194 5370 3.202818 TGGCATGTCCACTTGAATCCTAT 59.797 43.478 4.93 0.00 40.72 2.57
5195 5371 2.575735 TGGCATGTCCACTTGAATCCTA 59.424 45.455 4.93 0.00 40.72 2.94
5196 5372 1.355381 TGGCATGTCCACTTGAATCCT 59.645 47.619 4.93 0.00 40.72 3.24
5197 5373 1.838112 TGGCATGTCCACTTGAATCC 58.162 50.000 4.93 0.00 40.72 3.01
5206 5382 1.355381 AGGATTTGAGTGGCATGTCCA 59.645 47.619 4.93 4.93 44.18 4.02
5207 5383 2.134789 AGGATTTGAGTGGCATGTCC 57.865 50.000 0.00 0.00 33.11 4.02
5208 5384 7.516198 AAATATAGGATTTGAGTGGCATGTC 57.484 36.000 0.00 0.00 0.00 3.06
5209 5385 7.902920 AAAATATAGGATTTGAGTGGCATGT 57.097 32.000 0.00 0.00 0.00 3.21
5210 5386 7.869429 GGAAAAATATAGGATTTGAGTGGCATG 59.131 37.037 0.00 0.00 0.00 4.06
5211 5387 7.786464 AGGAAAAATATAGGATTTGAGTGGCAT 59.214 33.333 0.00 0.00 0.00 4.40
5212 5388 7.125391 AGGAAAAATATAGGATTTGAGTGGCA 58.875 34.615 0.00 0.00 0.00 4.92
5213 5389 7.588497 AGGAAAAATATAGGATTTGAGTGGC 57.412 36.000 0.00 0.00 0.00 5.01
5218 5394 9.515226 CGGGAATAGGAAAAATATAGGATTTGA 57.485 33.333 0.00 0.00 0.00 2.69
5219 5395 9.297037 ACGGGAATAGGAAAAATATAGGATTTG 57.703 33.333 0.00 0.00 0.00 2.32
5220 5396 9.297037 CACGGGAATAGGAAAAATATAGGATTT 57.703 33.333 0.00 0.00 0.00 2.17
5221 5397 8.445588 ACACGGGAATAGGAAAAATATAGGATT 58.554 33.333 0.00 0.00 0.00 3.01
5222 5398 7.985589 ACACGGGAATAGGAAAAATATAGGAT 58.014 34.615 0.00 0.00 0.00 3.24
5223 5399 7.383156 ACACGGGAATAGGAAAAATATAGGA 57.617 36.000 0.00 0.00 0.00 2.94
5224 5400 8.459911 AAACACGGGAATAGGAAAAATATAGG 57.540 34.615 0.00 0.00 0.00 2.57
5225 5401 9.730420 CAAAACACGGGAATAGGAAAAATATAG 57.270 33.333 0.00 0.00 0.00 1.31
5226 5402 9.463902 TCAAAACACGGGAATAGGAAAAATATA 57.536 29.630 0.00 0.00 0.00 0.86
5227 5403 8.356000 TCAAAACACGGGAATAGGAAAAATAT 57.644 30.769 0.00 0.00 0.00 1.28
5228 5404 7.762588 TCAAAACACGGGAATAGGAAAAATA 57.237 32.000 0.00 0.00 0.00 1.40
5229 5405 6.658188 TCAAAACACGGGAATAGGAAAAAT 57.342 33.333 0.00 0.00 0.00 1.82
5230 5406 6.466885 TTCAAAACACGGGAATAGGAAAAA 57.533 33.333 0.00 0.00 0.00 1.94
5231 5407 6.466885 TTTCAAAACACGGGAATAGGAAAA 57.533 33.333 0.00 0.00 0.00 2.29
5232 5408 6.466885 TTTTCAAAACACGGGAATAGGAAA 57.533 33.333 0.00 0.00 0.00 3.13
5233 5409 6.294843 GGATTTTCAAAACACGGGAATAGGAA 60.295 38.462 0.00 0.00 0.00 3.36
5234 5410 5.184287 GGATTTTCAAAACACGGGAATAGGA 59.816 40.000 0.00 0.00 0.00 2.94
5235 5411 5.185056 AGGATTTTCAAAACACGGGAATAGG 59.815 40.000 0.00 0.00 0.00 2.57
5236 5412 6.092748 CAGGATTTTCAAAACACGGGAATAG 58.907 40.000 0.00 0.00 0.00 1.73
5237 5413 5.565834 GCAGGATTTTCAAAACACGGGAATA 60.566 40.000 0.00 0.00 0.00 1.75
5238 5414 4.799255 GCAGGATTTTCAAAACACGGGAAT 60.799 41.667 0.00 0.00 0.00 3.01
5239 5415 3.491792 GCAGGATTTTCAAAACACGGGAA 60.492 43.478 0.00 0.00 0.00 3.97
5240 5416 2.035321 GCAGGATTTTCAAAACACGGGA 59.965 45.455 0.00 0.00 0.00 5.14
5241 5417 2.223923 TGCAGGATTTTCAAAACACGGG 60.224 45.455 0.00 0.00 0.00 5.28
5242 5418 3.090952 TGCAGGATTTTCAAAACACGG 57.909 42.857 0.00 0.00 0.00 4.94
5243 5419 5.233902 TGATTTGCAGGATTTTCAAAACACG 59.766 36.000 0.00 0.00 34.00 4.49
5244 5420 6.601741 TGATTTGCAGGATTTTCAAAACAC 57.398 33.333 0.00 0.00 34.00 3.32
5245 5421 7.551974 TCTTTGATTTGCAGGATTTTCAAAACA 59.448 29.630 0.00 0.00 33.97 2.83
5246 5422 7.918643 TCTTTGATTTGCAGGATTTTCAAAAC 58.081 30.769 0.00 0.00 33.97 2.43
5247 5423 8.561212 CATCTTTGATTTGCAGGATTTTCAAAA 58.439 29.630 0.00 0.00 33.97 2.44
5248 5424 7.173562 CCATCTTTGATTTGCAGGATTTTCAAA 59.826 33.333 0.00 0.00 34.68 2.69
5249 5425 6.651643 CCATCTTTGATTTGCAGGATTTTCAA 59.348 34.615 0.00 0.00 0.00 2.69
5250 5426 6.167685 CCATCTTTGATTTGCAGGATTTTCA 58.832 36.000 0.00 0.00 0.00 2.69
5251 5427 5.064325 GCCATCTTTGATTTGCAGGATTTTC 59.936 40.000 0.00 0.00 0.00 2.29
5252 5428 4.939439 GCCATCTTTGATTTGCAGGATTTT 59.061 37.500 0.00 0.00 0.00 1.82
5253 5429 4.510571 GCCATCTTTGATTTGCAGGATTT 58.489 39.130 0.00 0.00 0.00 2.17
5254 5430 3.118519 GGCCATCTTTGATTTGCAGGATT 60.119 43.478 0.00 0.00 0.00 3.01
5255 5431 2.433239 GGCCATCTTTGATTTGCAGGAT 59.567 45.455 0.00 0.00 0.00 3.24
5256 5432 1.826720 GGCCATCTTTGATTTGCAGGA 59.173 47.619 0.00 0.00 0.00 3.86
5257 5433 1.829222 AGGCCATCTTTGATTTGCAGG 59.171 47.619 5.01 0.00 0.00 4.85
5258 5434 3.604875 AAGGCCATCTTTGATTTGCAG 57.395 42.857 5.01 0.00 29.99 4.41
5259 5435 3.119029 GCTAAGGCCATCTTTGATTTGCA 60.119 43.478 5.01 0.00 36.93 4.08
5260 5436 3.131755 AGCTAAGGCCATCTTTGATTTGC 59.868 43.478 5.01 0.00 39.73 3.68
5261 5437 4.996788 AGCTAAGGCCATCTTTGATTTG 57.003 40.909 5.01 0.00 39.73 2.32
5262 5438 4.382362 GCAAGCTAAGGCCATCTTTGATTT 60.382 41.667 5.01 0.00 35.36 2.17
5263 5439 3.131755 GCAAGCTAAGGCCATCTTTGATT 59.868 43.478 5.01 0.00 37.32 2.57
5264 5440 2.692041 GCAAGCTAAGGCCATCTTTGAT 59.308 45.455 5.01 0.00 39.73 2.57
5265 5441 2.094675 GCAAGCTAAGGCCATCTTTGA 58.905 47.619 5.01 0.00 39.73 2.69
5266 5442 1.820519 TGCAAGCTAAGGCCATCTTTG 59.179 47.619 5.01 4.04 39.73 2.77
5267 5443 2.220653 TGCAAGCTAAGGCCATCTTT 57.779 45.000 5.01 0.00 39.73 2.52
5268 5444 2.029623 CATGCAAGCTAAGGCCATCTT 58.970 47.619 5.01 0.00 39.73 2.40
5269 5445 1.064166 ACATGCAAGCTAAGGCCATCT 60.064 47.619 5.01 0.00 39.73 2.90
5270 5446 1.396653 ACATGCAAGCTAAGGCCATC 58.603 50.000 5.01 0.00 39.73 3.51
5271 5447 1.856629 AACATGCAAGCTAAGGCCAT 58.143 45.000 5.01 0.00 39.73 4.40
5272 5448 1.631405 AAACATGCAAGCTAAGGCCA 58.369 45.000 5.01 0.00 39.73 5.36
5273 5449 2.749280 AAAACATGCAAGCTAAGGCC 57.251 45.000 0.00 0.00 39.73 5.19
5274 5450 3.652274 TGAAAAACATGCAAGCTAAGGC 58.348 40.909 0.00 0.00 39.06 4.35
5287 5463 6.767456 AGGCAATAAATGGACATGAAAAACA 58.233 32.000 0.00 0.00 0.00 2.83
5293 5469 3.118075 TCGGAGGCAATAAATGGACATGA 60.118 43.478 0.00 0.00 0.00 3.07
5309 5485 2.311124 AAACGGAATAGCTTCGGAGG 57.689 50.000 0.00 0.00 36.05 4.30
5377 5554 3.263425 TCCAAACAGGATCCTAACAGGTC 59.737 47.826 15.67 0.00 43.07 3.85
5447 8603 3.926527 GGCAAGAATTTCACCGGAATTTC 59.073 43.478 9.46 5.43 40.86 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.