Multiple sequence alignment - TraesCS7B01G208800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G208800 chr7B 100.000 3213 0 0 912 4124 382130441 382133653 0.000000e+00 5934.0
1 TraesCS7B01G208800 chr7B 100.000 581 0 0 1 581 382129530 382130110 0.000000e+00 1074.0
2 TraesCS7B01G208800 chr7B 95.556 270 9 1 1 267 179395306 179395037 2.950000e-116 429.0
3 TraesCS7B01G208800 chr7D 89.362 3337 193 67 914 4124 386844536 386847836 0.000000e+00 4047.0
4 TraesCS7B01G208800 chr7A 91.341 2275 152 25 927 3177 436881279 436883532 0.000000e+00 3068.0
5 TraesCS7B01G208800 chr7A 87.445 916 45 26 3251 4124 436883571 436884458 0.000000e+00 990.0
6 TraesCS7B01G208800 chr1B 95.588 272 9 1 1 269 58192590 58192861 2.280000e-117 433.0
7 TraesCS7B01G208800 chr1B 95.556 270 9 1 1 267 402955174 402954905 2.950000e-116 429.0
8 TraesCS7B01G208800 chr1B 95.556 270 9 1 1 267 680140862 680140593 2.950000e-116 429.0
9 TraesCS7B01G208800 chr5B 94.346 283 13 1 1 280 521187085 521186803 8.190000e-117 431.0
10 TraesCS7B01G208800 chr5B 95.556 270 9 1 1 267 3457121 3457390 2.950000e-116 429.0
11 TraesCS7B01G208800 chr5B 95.556 270 9 1 1 267 378622922 378623191 2.950000e-116 429.0
12 TraesCS7B01G208800 chr4B 95.556 270 9 1 1 267 62993257 62992988 2.950000e-116 429.0
13 TraesCS7B01G208800 chr4B 95.556 270 9 1 1 267 92747965 92747696 2.950000e-116 429.0
14 TraesCS7B01G208800 chr6A 82.609 115 16 2 313 423 58901751 58901865 9.430000e-17 99.0
15 TraesCS7B01G208800 chr6A 91.837 49 3 1 3379 3426 409430681 409430729 2.660000e-07 67.6
16 TraesCS7B01G208800 chr6D 81.081 111 17 2 313 419 44253341 44253451 7.350000e-13 86.1
17 TraesCS7B01G208800 chr6B 91.837 49 3 1 3379 3426 471675181 471675229 2.660000e-07 67.6
18 TraesCS7B01G208800 chr1D 93.182 44 3 0 3386 3429 438878650 438878693 9.570000e-07 65.8
19 TraesCS7B01G208800 chr1D 93.182 44 3 0 3386 3429 438941677 438941720 9.570000e-07 65.8
20 TraesCS7B01G208800 chr4D 100.000 33 0 0 3400 3432 113929717 113929685 1.240000e-05 62.1
21 TraesCS7B01G208800 chr4D 92.857 42 3 0 3391 3432 499225915 499225956 1.240000e-05 62.1
22 TraesCS7B01G208800 chr3B 94.872 39 0 2 3391 3428 551513938 551513975 4.450000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G208800 chr7B 382129530 382133653 4123 False 3504 5934 100.000 1 4124 2 chr7B.!!$F1 4123
1 TraesCS7B01G208800 chr7D 386844536 386847836 3300 False 4047 4047 89.362 914 4124 1 chr7D.!!$F1 3210
2 TraesCS7B01G208800 chr7A 436881279 436884458 3179 False 2029 3068 89.393 927 4124 2 chr7A.!!$F1 3197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.034337 TTTGTGCAGGTACGAGGGAC 59.966 55.0 0.00 0.0 0.00 4.46 F
522 523 0.034477 AAAGTTACCGGGCAGATGGG 60.034 55.0 6.32 0.0 0.00 4.00 F
559 560 0.040058 TGCCAGGCTGGAATGTGATT 59.960 50.0 37.07 0.0 40.96 2.57 F
936 937 0.250338 AGTTTGTTCGACCTCCAGCC 60.250 55.0 0.00 0.0 0.00 4.85 F
1962 1980 0.320247 CTCGCTTCTGTGCCTTCTGT 60.320 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 1866 0.664761 CATGGGCACTTTCGCTATGG 59.335 55.000 0.0 0.0 0.00 2.74 R
2312 2337 1.156736 CGAGTGTTAGTGCCCTTTGG 58.843 55.000 0.0 0.0 0.00 3.28 R
2546 2579 5.010922 ACAGGAGAAAGCATAACATTTGCAA 59.989 36.000 0.0 0.0 42.62 4.08 R
2836 2873 1.203994 TCTTAGACGCACTGGTTAGCC 59.796 52.381 0.0 0.0 0.00 3.93 R
3893 4015 0.107456 ATCTCATGCCGCCGATTTCT 59.893 50.000 0.0 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 7.680442 TTATCTCTATCAGATCTCACCTTCG 57.320 40.000 0.00 0.00 41.39 3.79
71 72 5.042463 TCTCTATCAGATCTCACCTTCGT 57.958 43.478 0.00 0.00 0.00 3.85
72 73 6.176014 TCTCTATCAGATCTCACCTTCGTA 57.824 41.667 0.00 0.00 0.00 3.43
73 74 6.592870 TCTCTATCAGATCTCACCTTCGTAA 58.407 40.000 0.00 0.00 0.00 3.18
74 75 6.708502 TCTCTATCAGATCTCACCTTCGTAAG 59.291 42.308 0.00 0.00 0.00 2.34
75 76 6.358178 TCTATCAGATCTCACCTTCGTAAGT 58.642 40.000 0.00 0.00 39.48 2.24
76 77 4.703645 TCAGATCTCACCTTCGTAAGTG 57.296 45.455 0.00 0.00 39.48 3.16
77 78 4.332828 TCAGATCTCACCTTCGTAAGTGA 58.667 43.478 0.00 0.00 39.48 3.41
78 79 4.156190 TCAGATCTCACCTTCGTAAGTGAC 59.844 45.833 0.00 0.00 39.48 3.67
79 80 3.444388 AGATCTCACCTTCGTAAGTGACC 59.556 47.826 0.00 0.00 39.48 4.02
80 81 1.538512 TCTCACCTTCGTAAGTGACCG 59.461 52.381 0.00 0.00 39.48 4.79
81 82 1.268899 CTCACCTTCGTAAGTGACCGT 59.731 52.381 0.00 0.00 39.48 4.83
82 83 1.001048 TCACCTTCGTAAGTGACCGTG 60.001 52.381 0.00 0.00 39.48 4.94
83 84 1.001048 CACCTTCGTAAGTGACCGTGA 60.001 52.381 0.00 0.00 39.48 4.35
84 85 1.682854 ACCTTCGTAAGTGACCGTGAA 59.317 47.619 0.00 0.00 39.48 3.18
85 86 2.288030 ACCTTCGTAAGTGACCGTGAAG 60.288 50.000 0.00 0.00 39.48 3.02
86 87 2.325761 CTTCGTAAGTGACCGTGAAGG 58.674 52.381 0.00 0.00 42.63 3.46
87 88 0.599558 TCGTAAGTGACCGTGAAGGG 59.400 55.000 0.00 0.00 41.60 3.95
88 89 0.599558 CGTAAGTGACCGTGAAGGGA 59.400 55.000 0.00 0.00 46.96 4.20
89 90 1.203994 CGTAAGTGACCGTGAAGGGAT 59.796 52.381 0.00 0.00 46.96 3.85
90 91 2.353406 CGTAAGTGACCGTGAAGGGATT 60.353 50.000 0.00 0.00 46.96 3.01
91 92 2.185004 AAGTGACCGTGAAGGGATTG 57.815 50.000 0.00 0.00 46.96 2.67
92 93 1.348064 AGTGACCGTGAAGGGATTGA 58.652 50.000 0.00 0.00 46.96 2.57
93 94 1.002087 AGTGACCGTGAAGGGATTGAC 59.998 52.381 0.00 0.00 46.96 3.18
94 95 1.052617 TGACCGTGAAGGGATTGACA 58.947 50.000 0.00 0.00 46.96 3.58
95 96 1.418264 TGACCGTGAAGGGATTGACAA 59.582 47.619 0.00 0.00 46.96 3.18
96 97 1.804748 GACCGTGAAGGGATTGACAAC 59.195 52.381 0.00 0.00 46.96 3.32
97 98 1.165270 CCGTGAAGGGATTGACAACC 58.835 55.000 0.00 0.00 35.97 3.77
98 99 1.165270 CGTGAAGGGATTGACAACCC 58.835 55.000 14.59 14.59 45.88 4.11
99 100 1.545841 GTGAAGGGATTGACAACCCC 58.454 55.000 10.02 10.02 46.64 4.95
104 105 1.763968 GGGATTGACAACCCCTAAGC 58.236 55.000 10.82 0.00 40.19 3.09
105 106 1.379527 GGATTGACAACCCCTAAGCG 58.620 55.000 0.00 0.00 0.00 4.68
106 107 1.339727 GGATTGACAACCCCTAAGCGT 60.340 52.381 0.00 0.00 0.00 5.07
107 108 2.433436 GATTGACAACCCCTAAGCGTT 58.567 47.619 0.00 0.00 0.00 4.84
108 109 1.600023 TTGACAACCCCTAAGCGTTG 58.400 50.000 0.00 0.00 43.97 4.10
109 110 0.250553 TGACAACCCCTAAGCGTTGG 60.251 55.000 5.08 0.00 42.93 3.77
110 111 0.250597 GACAACCCCTAAGCGTTGGT 60.251 55.000 5.08 0.00 42.93 3.67
111 112 0.184211 ACAACCCCTAAGCGTTGGTT 59.816 50.000 5.08 0.00 42.93 3.67
112 113 3.030415 AACCCCTAAGCGTTGGTTG 57.970 52.632 0.00 0.00 39.54 3.77
113 114 1.176619 AACCCCTAAGCGTTGGTTGC 61.177 55.000 0.00 0.00 39.54 4.17
114 115 2.686816 CCCCTAAGCGTTGGTTGCG 61.687 63.158 0.00 0.00 37.44 4.85
115 116 1.669760 CCCTAAGCGTTGGTTGCGA 60.670 57.895 0.00 0.00 37.44 5.10
116 117 1.635663 CCCTAAGCGTTGGTTGCGAG 61.636 60.000 0.00 0.00 37.44 5.03
117 118 0.949105 CCTAAGCGTTGGTTGCGAGT 60.949 55.000 0.00 0.00 37.44 4.18
118 119 1.670674 CCTAAGCGTTGGTTGCGAGTA 60.671 52.381 0.00 0.00 37.44 2.59
119 120 1.654105 CTAAGCGTTGGTTGCGAGTAG 59.346 52.381 0.00 0.00 37.44 2.57
133 134 1.518929 CGAGTAGCTATCGCTTTGTGC 59.481 52.381 0.00 0.00 46.47 4.57
134 135 2.540515 GAGTAGCTATCGCTTTGTGCA 58.459 47.619 0.00 0.00 46.47 4.57
135 136 2.537625 GAGTAGCTATCGCTTTGTGCAG 59.462 50.000 0.00 0.00 46.47 4.41
136 137 1.594862 GTAGCTATCGCTTTGTGCAGG 59.405 52.381 0.00 0.00 46.47 4.85
137 138 0.036010 AGCTATCGCTTTGTGCAGGT 60.036 50.000 0.00 0.00 46.47 4.00
138 139 1.207089 AGCTATCGCTTTGTGCAGGTA 59.793 47.619 0.00 0.00 46.47 3.08
139 140 1.327764 GCTATCGCTTTGTGCAGGTAC 59.672 52.381 0.00 0.00 43.06 3.34
140 141 1.588404 CTATCGCTTTGTGCAGGTACG 59.412 52.381 0.00 0.00 43.06 3.67
141 142 0.037697 ATCGCTTTGTGCAGGTACGA 60.038 50.000 0.00 0.00 43.06 3.43
142 143 0.666274 TCGCTTTGTGCAGGTACGAG 60.666 55.000 0.00 0.00 43.06 4.18
143 144 1.626654 CGCTTTGTGCAGGTACGAGG 61.627 60.000 0.00 0.00 43.06 4.63
144 145 1.298859 GCTTTGTGCAGGTACGAGGG 61.299 60.000 0.00 0.00 42.31 4.30
145 146 0.320374 CTTTGTGCAGGTACGAGGGA 59.680 55.000 0.00 0.00 0.00 4.20
146 147 0.034337 TTTGTGCAGGTACGAGGGAC 59.966 55.000 0.00 0.00 0.00 4.46
148 149 0.830444 TGTGCAGGTACGAGGGACTT 60.830 55.000 0.00 0.00 41.55 3.01
150 151 1.448013 GCAGGTACGAGGGACTTGC 60.448 63.158 0.00 0.00 45.68 4.01
151 152 1.153823 CAGGTACGAGGGACTTGCG 60.154 63.158 0.00 0.00 45.68 4.85
152 153 2.508663 GGTACGAGGGACTTGCGC 60.509 66.667 0.00 0.00 45.68 6.09
153 154 2.879462 GTACGAGGGACTTGCGCG 60.879 66.667 0.00 0.00 45.68 6.86
154 155 3.367743 TACGAGGGACTTGCGCGT 61.368 61.111 8.43 0.00 45.68 6.01
155 156 3.332493 TACGAGGGACTTGCGCGTC 62.332 63.158 8.43 4.70 45.68 5.19
156 157 4.421479 CGAGGGACTTGCGCGTCT 62.421 66.667 8.43 0.26 41.55 4.18
157 158 2.507324 GAGGGACTTGCGCGTCTC 60.507 66.667 8.43 10.77 41.55 3.36
158 159 3.991536 GAGGGACTTGCGCGTCTCC 62.992 68.421 8.43 9.66 41.55 3.71
159 160 4.070552 GGGACTTGCGCGTCTCCT 62.071 66.667 8.43 0.00 34.38 3.69
160 161 2.707849 GGGACTTGCGCGTCTCCTA 61.708 63.158 8.43 0.00 34.38 2.94
161 162 1.516603 GGACTTGCGCGTCTCCTAC 60.517 63.158 8.43 0.00 34.38 3.18
162 163 1.507174 GACTTGCGCGTCTCCTACT 59.493 57.895 8.43 0.00 0.00 2.57
163 164 0.798771 GACTTGCGCGTCTCCTACTG 60.799 60.000 8.43 0.00 0.00 2.74
164 165 1.517257 CTTGCGCGTCTCCTACTGG 60.517 63.158 8.43 0.00 0.00 4.00
165 166 1.934220 CTTGCGCGTCTCCTACTGGA 61.934 60.000 8.43 0.00 40.69 3.86
166 167 1.320344 TTGCGCGTCTCCTACTGGAT 61.320 55.000 8.43 0.00 42.29 3.41
167 168 1.320344 TGCGCGTCTCCTACTGGATT 61.320 55.000 8.43 0.00 42.29 3.01
168 169 0.872021 GCGCGTCTCCTACTGGATTG 60.872 60.000 8.43 0.00 42.29 2.67
169 170 0.738975 CGCGTCTCCTACTGGATTGA 59.261 55.000 0.00 0.00 42.29 2.57
170 171 1.338337 CGCGTCTCCTACTGGATTGAT 59.662 52.381 0.00 0.00 42.29 2.57
171 172 2.552743 CGCGTCTCCTACTGGATTGATA 59.447 50.000 0.00 0.00 42.29 2.15
172 173 3.609644 CGCGTCTCCTACTGGATTGATAC 60.610 52.174 0.00 0.00 42.29 2.24
173 174 3.305471 GCGTCTCCTACTGGATTGATACC 60.305 52.174 0.00 0.00 42.29 2.73
174 175 4.145807 CGTCTCCTACTGGATTGATACCT 58.854 47.826 0.00 0.00 42.29 3.08
175 176 4.585162 CGTCTCCTACTGGATTGATACCTT 59.415 45.833 0.00 0.00 42.29 3.50
176 177 5.508153 CGTCTCCTACTGGATTGATACCTTG 60.508 48.000 0.00 0.00 42.29 3.61
177 178 4.901849 TCTCCTACTGGATTGATACCTTGG 59.098 45.833 0.00 0.00 42.29 3.61
178 179 4.631234 TCCTACTGGATTGATACCTTGGT 58.369 43.478 0.00 0.00 37.46 3.67
179 180 5.036916 TCCTACTGGATTGATACCTTGGTT 58.963 41.667 0.00 0.00 37.46 3.67
180 181 5.491078 TCCTACTGGATTGATACCTTGGTTT 59.509 40.000 0.00 0.00 37.46 3.27
181 182 6.011981 TCCTACTGGATTGATACCTTGGTTTT 60.012 38.462 0.00 0.00 37.46 2.43
182 183 7.183112 TCCTACTGGATTGATACCTTGGTTTTA 59.817 37.037 0.00 0.00 37.46 1.52
183 184 7.832187 CCTACTGGATTGATACCTTGGTTTTAA 59.168 37.037 0.00 0.00 34.57 1.52
184 185 9.238368 CTACTGGATTGATACCTTGGTTTTAAA 57.762 33.333 0.00 0.00 0.00 1.52
185 186 8.485578 ACTGGATTGATACCTTGGTTTTAAAA 57.514 30.769 0.00 0.00 0.00 1.52
186 187 8.929487 ACTGGATTGATACCTTGGTTTTAAAAA 58.071 29.630 1.31 0.00 0.00 1.94
207 208 7.506328 AAAAACTGAGGAAAATACTTACGCT 57.494 32.000 0.00 0.00 0.00 5.07
208 209 8.611654 AAAAACTGAGGAAAATACTTACGCTA 57.388 30.769 0.00 0.00 0.00 4.26
209 210 7.592439 AAACTGAGGAAAATACTTACGCTAC 57.408 36.000 0.00 0.00 0.00 3.58
210 211 6.527057 ACTGAGGAAAATACTTACGCTACT 57.473 37.500 0.00 0.00 0.00 2.57
211 212 6.331061 ACTGAGGAAAATACTTACGCTACTG 58.669 40.000 0.00 0.00 0.00 2.74
212 213 6.071503 ACTGAGGAAAATACTTACGCTACTGT 60.072 38.462 0.00 0.00 0.00 3.55
213 214 6.097356 TGAGGAAAATACTTACGCTACTGTG 58.903 40.000 0.00 0.00 0.00 3.66
214 215 4.868734 AGGAAAATACTTACGCTACTGTGC 59.131 41.667 0.00 0.00 0.00 4.57
215 216 4.868734 GGAAAATACTTACGCTACTGTGCT 59.131 41.667 0.00 0.00 0.00 4.40
216 217 5.220416 GGAAAATACTTACGCTACTGTGCTG 60.220 44.000 0.00 0.00 0.00 4.41
217 218 2.273370 TACTTACGCTACTGTGCTGC 57.727 50.000 0.00 0.00 0.00 5.25
218 219 0.317160 ACTTACGCTACTGTGCTGCA 59.683 50.000 0.00 0.00 0.00 4.41
219 220 1.066858 ACTTACGCTACTGTGCTGCAT 60.067 47.619 5.27 0.00 0.00 3.96
220 221 1.590238 CTTACGCTACTGTGCTGCATC 59.410 52.381 5.27 0.09 0.00 3.91
221 222 0.530288 TACGCTACTGTGCTGCATCA 59.470 50.000 5.27 5.20 0.00 3.07
222 223 0.107993 ACGCTACTGTGCTGCATCAT 60.108 50.000 5.27 0.00 0.00 2.45
223 224 0.580578 CGCTACTGTGCTGCATCATC 59.419 55.000 5.27 0.00 0.00 2.92
224 225 0.942962 GCTACTGTGCTGCATCATCC 59.057 55.000 5.27 0.00 0.00 3.51
225 226 1.474677 GCTACTGTGCTGCATCATCCT 60.475 52.381 5.27 0.00 0.00 3.24
226 227 2.481854 CTACTGTGCTGCATCATCCTC 58.518 52.381 5.27 0.00 0.00 3.71
227 228 0.910338 ACTGTGCTGCATCATCCTCT 59.090 50.000 5.27 0.00 0.00 3.69
228 229 1.134461 ACTGTGCTGCATCATCCTCTC 60.134 52.381 5.27 0.00 0.00 3.20
229 230 0.179702 TGTGCTGCATCATCCTCTCC 59.820 55.000 5.27 0.00 0.00 3.71
230 231 0.469070 GTGCTGCATCATCCTCTCCT 59.531 55.000 5.27 0.00 0.00 3.69
231 232 1.134159 GTGCTGCATCATCCTCTCCTT 60.134 52.381 5.27 0.00 0.00 3.36
232 233 1.562942 TGCTGCATCATCCTCTCCTTT 59.437 47.619 0.00 0.00 0.00 3.11
233 234 2.025605 TGCTGCATCATCCTCTCCTTTT 60.026 45.455 0.00 0.00 0.00 2.27
234 235 2.617774 GCTGCATCATCCTCTCCTTTTC 59.382 50.000 0.00 0.00 0.00 2.29
235 236 2.871022 CTGCATCATCCTCTCCTTTTCG 59.129 50.000 0.00 0.00 0.00 3.46
236 237 2.216898 GCATCATCCTCTCCTTTTCGG 58.783 52.381 0.00 0.00 0.00 4.30
237 238 2.158900 GCATCATCCTCTCCTTTTCGGA 60.159 50.000 0.00 0.00 40.30 4.55
248 249 3.071479 TCCTTTTCGGAGAAATCCAACG 58.929 45.455 0.00 0.00 45.90 4.10
249 250 2.414161 CCTTTTCGGAGAAATCCAACGC 60.414 50.000 0.00 0.00 45.90 4.84
250 251 1.885560 TTTCGGAGAAATCCAACGCA 58.114 45.000 0.00 0.00 45.90 5.24
251 252 1.885560 TTCGGAGAAATCCAACGCAA 58.114 45.000 0.00 0.00 45.90 4.85
252 253 1.804151 TTCGGAGAAATCCAACGCAAG 59.196 47.619 0.00 0.00 45.90 4.01
253 254 0.179189 CGGAGAAATCCAACGCAAGC 60.179 55.000 0.00 0.00 45.62 4.01
254 255 1.168714 GGAGAAATCCAACGCAAGCT 58.831 50.000 0.00 0.00 45.62 3.74
255 256 1.131315 GGAGAAATCCAACGCAAGCTC 59.869 52.381 0.00 0.00 45.62 4.09
256 257 0.798776 AGAAATCCAACGCAAGCTCG 59.201 50.000 0.00 0.00 45.62 5.03
257 258 0.796312 GAAATCCAACGCAAGCTCGA 59.204 50.000 1.33 0.00 45.62 4.04
258 259 0.798776 AAATCCAACGCAAGCTCGAG 59.201 50.000 8.45 8.45 45.62 4.04
259 260 0.037326 AATCCAACGCAAGCTCGAGA 60.037 50.000 18.75 0.00 45.62 4.04
260 261 0.737715 ATCCAACGCAAGCTCGAGAC 60.738 55.000 18.75 7.74 45.62 3.36
261 262 2.720758 CCAACGCAAGCTCGAGACG 61.721 63.158 18.75 15.56 45.62 4.18
262 263 2.016704 CAACGCAAGCTCGAGACGT 61.017 57.895 18.75 16.22 45.62 4.34
263 264 0.728129 CAACGCAAGCTCGAGACGTA 60.728 55.000 18.75 0.00 45.62 3.57
264 265 0.454620 AACGCAAGCTCGAGACGTAG 60.455 55.000 18.75 6.36 45.62 3.51
265 266 2.218239 CGCAAGCTCGAGACGTAGC 61.218 63.158 18.75 10.84 39.08 3.58
266 267 1.154016 GCAAGCTCGAGACGTAGCA 60.154 57.895 18.75 0.00 41.32 3.49
267 268 1.136872 GCAAGCTCGAGACGTAGCAG 61.137 60.000 18.75 3.95 41.32 4.24
268 269 0.169230 CAAGCTCGAGACGTAGCAGT 59.831 55.000 18.75 0.00 41.32 4.40
269 270 0.169230 AAGCTCGAGACGTAGCAGTG 59.831 55.000 18.75 0.00 41.32 3.66
270 271 0.673956 AGCTCGAGACGTAGCAGTGA 60.674 55.000 18.75 0.00 41.32 3.41
271 272 0.247894 GCTCGAGACGTAGCAGTGAG 60.248 60.000 18.75 0.13 38.63 3.51
272 273 1.080298 CTCGAGACGTAGCAGTGAGT 58.920 55.000 6.58 0.00 0.00 3.41
273 274 1.061421 CTCGAGACGTAGCAGTGAGTC 59.939 57.143 6.58 0.00 0.00 3.36
274 275 0.796927 CGAGACGTAGCAGTGAGTCA 59.203 55.000 0.00 0.00 36.18 3.41
275 276 1.398739 CGAGACGTAGCAGTGAGTCAT 59.601 52.381 0.00 0.00 36.18 3.06
276 277 2.608090 CGAGACGTAGCAGTGAGTCATA 59.392 50.000 0.00 0.00 36.18 2.15
277 278 3.063588 CGAGACGTAGCAGTGAGTCATAA 59.936 47.826 0.00 0.00 36.18 1.90
278 279 4.260825 CGAGACGTAGCAGTGAGTCATAAT 60.261 45.833 0.00 0.00 36.18 1.28
279 280 4.926244 AGACGTAGCAGTGAGTCATAATG 58.074 43.478 0.00 0.00 36.18 1.90
280 281 4.045104 GACGTAGCAGTGAGTCATAATGG 58.955 47.826 0.00 0.00 34.09 3.16
281 282 3.181475 ACGTAGCAGTGAGTCATAATGGG 60.181 47.826 0.00 0.00 0.00 4.00
282 283 3.181475 CGTAGCAGTGAGTCATAATGGGT 60.181 47.826 0.00 0.00 0.00 4.51
283 284 3.272574 AGCAGTGAGTCATAATGGGTG 57.727 47.619 0.00 0.00 0.00 4.61
284 285 1.672881 GCAGTGAGTCATAATGGGTGC 59.327 52.381 0.00 0.00 0.00 5.01
285 286 2.292267 CAGTGAGTCATAATGGGTGCC 58.708 52.381 0.00 0.00 0.00 5.01
286 287 1.134401 AGTGAGTCATAATGGGTGCCG 60.134 52.381 0.00 0.00 0.00 5.69
287 288 0.463654 TGAGTCATAATGGGTGCCGC 60.464 55.000 0.00 0.00 0.00 6.53
288 289 1.152963 AGTCATAATGGGTGCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
289 290 1.453015 GTCATAATGGGTGCCGCCA 60.453 57.895 0.00 0.00 39.65 5.69
290 291 1.034838 GTCATAATGGGTGCCGCCAA 61.035 55.000 0.00 0.00 39.65 4.52
291 292 0.751277 TCATAATGGGTGCCGCCAAG 60.751 55.000 0.00 0.00 39.65 3.61
292 293 1.455587 ATAATGGGTGCCGCCAAGG 60.456 57.895 0.00 0.00 44.97 3.61
301 302 4.020617 CCGCCAAGGCCACTCTGA 62.021 66.667 5.01 0.00 37.98 3.27
302 303 2.270205 CGCCAAGGCCACTCTGAT 59.730 61.111 5.01 0.00 37.98 2.90
303 304 1.522092 CGCCAAGGCCACTCTGATA 59.478 57.895 5.01 0.00 37.98 2.15
304 305 0.811616 CGCCAAGGCCACTCTGATAC 60.812 60.000 5.01 0.00 37.98 2.24
305 306 0.464554 GCCAAGGCCACTCTGATACC 60.465 60.000 5.01 0.00 34.56 2.73
306 307 0.181350 CCAAGGCCACTCTGATACCC 59.819 60.000 5.01 0.00 0.00 3.69
307 308 0.181350 CAAGGCCACTCTGATACCCC 59.819 60.000 5.01 0.00 0.00 4.95
308 309 0.044855 AAGGCCACTCTGATACCCCT 59.955 55.000 5.01 0.00 0.00 4.79
309 310 0.941963 AGGCCACTCTGATACCCCTA 59.058 55.000 5.01 0.00 0.00 3.53
310 311 1.294068 AGGCCACTCTGATACCCCTAA 59.706 52.381 5.01 0.00 0.00 2.69
311 312 1.694696 GGCCACTCTGATACCCCTAAG 59.305 57.143 0.00 0.00 0.00 2.18
312 313 2.399580 GCCACTCTGATACCCCTAAGT 58.600 52.381 0.00 0.00 0.00 2.24
313 314 2.365941 GCCACTCTGATACCCCTAAGTC 59.634 54.545 0.00 0.00 0.00 3.01
314 315 3.643237 CCACTCTGATACCCCTAAGTCA 58.357 50.000 0.00 0.00 0.00 3.41
315 316 3.385111 CCACTCTGATACCCCTAAGTCAC 59.615 52.174 0.00 0.00 0.00 3.67
316 317 4.282496 CACTCTGATACCCCTAAGTCACT 58.718 47.826 0.00 0.00 0.00 3.41
317 318 4.712337 CACTCTGATACCCCTAAGTCACTT 59.288 45.833 0.00 0.00 0.00 3.16
318 319 4.957327 ACTCTGATACCCCTAAGTCACTTC 59.043 45.833 0.00 0.00 0.00 3.01
319 320 4.942944 TCTGATACCCCTAAGTCACTTCA 58.057 43.478 0.00 0.00 0.00 3.02
320 321 5.529289 TCTGATACCCCTAAGTCACTTCAT 58.471 41.667 0.00 0.00 0.00 2.57
321 322 5.363868 TCTGATACCCCTAAGTCACTTCATG 59.636 44.000 0.00 0.00 0.00 3.07
322 323 4.408921 TGATACCCCTAAGTCACTTCATGG 59.591 45.833 0.00 0.00 0.00 3.66
323 324 1.282157 ACCCCTAAGTCACTTCATGGC 59.718 52.381 0.00 0.00 0.00 4.40
325 326 2.771943 CCCCTAAGTCACTTCATGGCTA 59.228 50.000 0.00 0.00 44.81 3.93
326 327 3.199946 CCCCTAAGTCACTTCATGGCTAA 59.800 47.826 0.00 0.00 44.81 3.09
327 328 4.192317 CCCTAAGTCACTTCATGGCTAAC 58.808 47.826 0.00 0.00 44.81 2.34
328 329 4.080863 CCCTAAGTCACTTCATGGCTAACT 60.081 45.833 0.00 0.00 44.81 2.24
329 330 5.491982 CCTAAGTCACTTCATGGCTAACTT 58.508 41.667 0.00 0.21 44.81 2.66
330 331 5.940470 CCTAAGTCACTTCATGGCTAACTTT 59.060 40.000 0.00 0.00 44.81 2.66
331 332 5.695851 AAGTCACTTCATGGCTAACTTTG 57.304 39.130 0.00 0.00 44.81 2.77
332 333 4.074970 AGTCACTTCATGGCTAACTTTGG 58.925 43.478 0.00 0.00 43.28 3.28
333 334 3.821033 GTCACTTCATGGCTAACTTTGGT 59.179 43.478 0.00 0.00 0.00 3.67
334 335 5.001232 GTCACTTCATGGCTAACTTTGGTA 58.999 41.667 0.00 0.00 0.00 3.25
335 336 5.122396 GTCACTTCATGGCTAACTTTGGTAG 59.878 44.000 0.00 0.00 0.00 3.18
336 337 4.396166 CACTTCATGGCTAACTTTGGTAGG 59.604 45.833 0.00 0.00 0.00 3.18
337 338 4.042934 ACTTCATGGCTAACTTTGGTAGGT 59.957 41.667 0.00 0.00 0.00 3.08
338 339 4.650972 TCATGGCTAACTTTGGTAGGTT 57.349 40.909 0.00 0.00 0.00 3.50
339 340 4.331968 TCATGGCTAACTTTGGTAGGTTG 58.668 43.478 0.00 0.00 0.00 3.77
340 341 4.042311 TCATGGCTAACTTTGGTAGGTTGA 59.958 41.667 0.00 0.00 0.00 3.18
341 342 4.440826 TGGCTAACTTTGGTAGGTTGAA 57.559 40.909 0.00 0.00 0.00 2.69
342 343 4.993028 TGGCTAACTTTGGTAGGTTGAAT 58.007 39.130 0.00 0.00 0.00 2.57
343 344 6.129414 TGGCTAACTTTGGTAGGTTGAATA 57.871 37.500 0.00 0.00 0.00 1.75
344 345 6.544650 TGGCTAACTTTGGTAGGTTGAATAA 58.455 36.000 0.00 0.00 0.00 1.40
345 346 6.431852 TGGCTAACTTTGGTAGGTTGAATAAC 59.568 38.462 0.00 0.00 36.04 1.89
365 366 2.673976 CGAACAACGGTTTGGTTAGG 57.326 50.000 0.00 0.00 37.36 2.69
366 367 1.334329 CGAACAACGGTTTGGTTAGGC 60.334 52.381 0.00 0.00 37.36 3.93
367 368 1.951602 GAACAACGGTTTGGTTAGGCT 59.048 47.619 0.00 0.00 37.36 4.58
368 369 1.601166 ACAACGGTTTGGTTAGGCTC 58.399 50.000 0.00 0.00 37.00 4.70
369 370 1.142262 ACAACGGTTTGGTTAGGCTCT 59.858 47.619 0.00 0.00 37.00 4.09
370 371 1.535462 CAACGGTTTGGTTAGGCTCTG 59.465 52.381 0.00 0.00 0.00 3.35
371 372 0.036306 ACGGTTTGGTTAGGCTCTGG 59.964 55.000 0.00 0.00 0.00 3.86
372 373 0.036306 CGGTTTGGTTAGGCTCTGGT 59.964 55.000 0.00 0.00 0.00 4.00
373 374 1.822506 GGTTTGGTTAGGCTCTGGTC 58.177 55.000 0.00 0.00 0.00 4.02
374 375 1.439679 GTTTGGTTAGGCTCTGGTCG 58.560 55.000 0.00 0.00 0.00 4.79
375 376 0.323629 TTTGGTTAGGCTCTGGTCGG 59.676 55.000 0.00 0.00 0.00 4.79
376 377 0.543410 TTGGTTAGGCTCTGGTCGGA 60.543 55.000 0.00 0.00 0.00 4.55
377 378 0.543410 TGGTTAGGCTCTGGTCGGAA 60.543 55.000 0.00 0.00 0.00 4.30
378 379 0.175989 GGTTAGGCTCTGGTCGGAAG 59.824 60.000 0.00 0.00 0.00 3.46
379 380 0.896226 GTTAGGCTCTGGTCGGAAGT 59.104 55.000 0.00 0.00 0.00 3.01
380 381 1.135053 GTTAGGCTCTGGTCGGAAGTC 60.135 57.143 0.00 0.00 0.00 3.01
381 382 0.039180 TAGGCTCTGGTCGGAAGTCA 59.961 55.000 0.00 0.00 0.00 3.41
382 383 0.616111 AGGCTCTGGTCGGAAGTCAT 60.616 55.000 0.00 0.00 0.00 3.06
383 384 0.460987 GGCTCTGGTCGGAAGTCATG 60.461 60.000 0.00 0.00 0.00 3.07
384 385 0.532573 GCTCTGGTCGGAAGTCATGA 59.467 55.000 0.00 0.00 0.00 3.07
385 386 1.066858 GCTCTGGTCGGAAGTCATGAA 60.067 52.381 0.00 0.00 0.00 2.57
386 387 2.886081 CTCTGGTCGGAAGTCATGAAG 58.114 52.381 0.00 0.00 0.00 3.02
387 388 2.493675 CTCTGGTCGGAAGTCATGAAGA 59.506 50.000 0.00 0.00 0.00 2.87
388 389 3.099905 TCTGGTCGGAAGTCATGAAGAT 58.900 45.455 0.00 0.00 0.00 2.40
389 390 3.515502 TCTGGTCGGAAGTCATGAAGATT 59.484 43.478 0.00 0.00 0.00 2.40
390 391 3.599343 TGGTCGGAAGTCATGAAGATTG 58.401 45.455 0.00 0.00 0.00 2.67
391 392 3.007940 TGGTCGGAAGTCATGAAGATTGT 59.992 43.478 0.00 0.00 0.00 2.71
392 393 4.003648 GGTCGGAAGTCATGAAGATTGTT 58.996 43.478 0.00 0.00 0.00 2.83
393 394 4.142816 GGTCGGAAGTCATGAAGATTGTTG 60.143 45.833 0.00 0.00 0.00 3.33
394 395 4.002982 TCGGAAGTCATGAAGATTGTTGG 58.997 43.478 0.00 0.00 0.00 3.77
395 396 4.002982 CGGAAGTCATGAAGATTGTTGGA 58.997 43.478 0.00 0.00 0.00 3.53
396 397 4.142816 CGGAAGTCATGAAGATTGTTGGAC 60.143 45.833 0.00 0.00 0.00 4.02
397 398 4.142816 GGAAGTCATGAAGATTGTTGGACG 60.143 45.833 0.00 0.00 0.00 4.79
398 399 4.271696 AGTCATGAAGATTGTTGGACGA 57.728 40.909 0.00 0.00 0.00 4.20
399 400 4.248859 AGTCATGAAGATTGTTGGACGAG 58.751 43.478 0.00 0.00 0.00 4.18
400 401 4.021104 AGTCATGAAGATTGTTGGACGAGA 60.021 41.667 0.00 0.00 0.00 4.04
401 402 4.872691 GTCATGAAGATTGTTGGACGAGAT 59.127 41.667 0.00 0.00 0.00 2.75
402 403 5.352569 GTCATGAAGATTGTTGGACGAGATT 59.647 40.000 0.00 0.00 0.00 2.40
403 404 5.352293 TCATGAAGATTGTTGGACGAGATTG 59.648 40.000 0.00 0.00 0.00 2.67
404 405 4.641396 TGAAGATTGTTGGACGAGATTGT 58.359 39.130 0.00 0.00 0.00 2.71
405 406 4.452114 TGAAGATTGTTGGACGAGATTGTG 59.548 41.667 0.00 0.00 0.00 3.33
406 407 4.271696 AGATTGTTGGACGAGATTGTGA 57.728 40.909 0.00 0.00 0.00 3.58
407 408 4.248859 AGATTGTTGGACGAGATTGTGAG 58.751 43.478 0.00 0.00 0.00 3.51
408 409 1.795768 TGTTGGACGAGATTGTGAGC 58.204 50.000 0.00 0.00 0.00 4.26
409 410 1.079503 GTTGGACGAGATTGTGAGCC 58.920 55.000 0.00 0.00 0.00 4.70
410 411 0.976641 TTGGACGAGATTGTGAGCCT 59.023 50.000 0.00 0.00 0.00 4.58
411 412 0.976641 TGGACGAGATTGTGAGCCTT 59.023 50.000 0.00 0.00 0.00 4.35
412 413 2.176045 TGGACGAGATTGTGAGCCTTA 58.824 47.619 0.00 0.00 0.00 2.69
413 414 2.565391 TGGACGAGATTGTGAGCCTTAA 59.435 45.455 0.00 0.00 0.00 1.85
414 415 3.197766 TGGACGAGATTGTGAGCCTTAAT 59.802 43.478 0.00 0.00 0.00 1.40
415 416 3.804873 GGACGAGATTGTGAGCCTTAATC 59.195 47.826 0.00 0.00 0.00 1.75
416 417 4.442192 GGACGAGATTGTGAGCCTTAATCT 60.442 45.833 0.00 0.00 42.21 2.40
417 418 5.091261 ACGAGATTGTGAGCCTTAATCTT 57.909 39.130 0.00 0.00 40.27 2.40
418 419 5.491982 ACGAGATTGTGAGCCTTAATCTTT 58.508 37.500 0.00 0.00 40.27 2.52
419 420 5.352569 ACGAGATTGTGAGCCTTAATCTTTG 59.647 40.000 0.00 0.00 40.27 2.77
420 421 5.582269 CGAGATTGTGAGCCTTAATCTTTGA 59.418 40.000 0.00 0.00 40.27 2.69
421 422 6.238049 CGAGATTGTGAGCCTTAATCTTTGAG 60.238 42.308 0.00 0.00 40.27 3.02
422 423 6.479884 AGATTGTGAGCCTTAATCTTTGAGT 58.520 36.000 0.00 0.00 37.78 3.41
423 424 5.947228 TTGTGAGCCTTAATCTTTGAGTG 57.053 39.130 0.00 0.00 0.00 3.51
424 425 4.973168 TGTGAGCCTTAATCTTTGAGTGT 58.027 39.130 0.00 0.00 0.00 3.55
425 426 5.376625 TGTGAGCCTTAATCTTTGAGTGTT 58.623 37.500 0.00 0.00 0.00 3.32
426 427 5.827797 TGTGAGCCTTAATCTTTGAGTGTTT 59.172 36.000 0.00 0.00 0.00 2.83
427 428 6.321181 TGTGAGCCTTAATCTTTGAGTGTTTT 59.679 34.615 0.00 0.00 0.00 2.43
428 429 7.147915 TGTGAGCCTTAATCTTTGAGTGTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
470 471 8.974060 TCTTGGAGTAATACACAAGAACTTTT 57.026 30.769 20.42 0.00 44.32 2.27
471 472 9.052759 TCTTGGAGTAATACACAAGAACTTTTC 57.947 33.333 20.42 0.00 44.32 2.29
472 473 7.416154 TGGAGTAATACACAAGAACTTTTCG 57.584 36.000 0.00 0.00 34.02 3.46
473 474 7.211573 TGGAGTAATACACAAGAACTTTTCGA 58.788 34.615 0.00 0.00 34.02 3.71
474 475 7.384115 TGGAGTAATACACAAGAACTTTTCGAG 59.616 37.037 0.00 0.00 34.02 4.04
475 476 7.148623 GGAGTAATACACAAGAACTTTTCGAGG 60.149 40.741 0.00 0.00 34.02 4.63
476 477 7.439381 AGTAATACACAAGAACTTTTCGAGGA 58.561 34.615 0.00 0.00 34.02 3.71
477 478 6.787085 AATACACAAGAACTTTTCGAGGAG 57.213 37.500 0.00 0.00 34.02 3.69
478 479 4.402056 ACACAAGAACTTTTCGAGGAGA 57.598 40.909 4.37 0.00 34.02 3.71
479 480 4.766375 ACACAAGAACTTTTCGAGGAGAA 58.234 39.130 4.37 0.00 37.01 2.87
480 481 5.183228 ACACAAGAACTTTTCGAGGAGAAA 58.817 37.500 4.37 0.00 46.22 2.52
521 522 1.834188 AAAAGTTACCGGGCAGATGG 58.166 50.000 6.32 0.00 0.00 3.51
522 523 0.034477 AAAGTTACCGGGCAGATGGG 60.034 55.000 6.32 0.00 0.00 4.00
523 524 1.921869 AAGTTACCGGGCAGATGGGG 61.922 60.000 6.32 0.00 0.00 4.96
524 525 3.804329 TTACCGGGCAGATGGGGC 61.804 66.667 6.32 0.00 0.00 5.80
529 530 4.864334 GGGCAGATGGGGCACGAG 62.864 72.222 0.00 0.00 34.52 4.18
530 531 4.864334 GGCAGATGGGGCACGAGG 62.864 72.222 0.00 0.00 0.00 4.63
548 549 4.457496 CATCGTCCGTGCCAGGCT 62.457 66.667 14.15 0.00 0.00 4.58
549 550 4.457496 ATCGTCCGTGCCAGGCTG 62.457 66.667 14.15 7.75 0.00 4.85
552 553 4.329545 GTCCGTGCCAGGCTGGAA 62.330 66.667 37.07 26.01 40.96 3.53
553 554 3.329889 TCCGTGCCAGGCTGGAAT 61.330 61.111 37.07 0.00 40.96 3.01
554 555 3.136123 CCGTGCCAGGCTGGAATG 61.136 66.667 37.07 30.73 40.96 2.67
555 556 2.360350 CGTGCCAGGCTGGAATGT 60.360 61.111 37.07 0.00 40.96 2.71
556 557 2.693762 CGTGCCAGGCTGGAATGTG 61.694 63.158 37.07 16.75 40.96 3.21
557 558 1.303561 GTGCCAGGCTGGAATGTGA 60.304 57.895 37.07 9.54 40.96 3.58
558 559 0.682209 GTGCCAGGCTGGAATGTGAT 60.682 55.000 37.07 0.00 40.96 3.06
559 560 0.040058 TGCCAGGCTGGAATGTGATT 59.960 50.000 37.07 0.00 40.96 2.57
560 561 1.284491 TGCCAGGCTGGAATGTGATTA 59.716 47.619 37.07 7.64 40.96 1.75
561 562 1.678101 GCCAGGCTGGAATGTGATTAC 59.322 52.381 37.07 11.19 40.96 1.89
562 563 2.945440 GCCAGGCTGGAATGTGATTACA 60.945 50.000 37.07 0.00 40.96 2.41
563 564 4.251443 GCCAGGCTGGAATGTGATTACAT 61.251 47.826 37.07 0.00 42.89 2.29
564 565 4.717877 CCAGGCTGGAATGTGATTACATA 58.282 43.478 29.96 0.00 46.54 2.29
565 566 4.758674 CCAGGCTGGAATGTGATTACATAG 59.241 45.833 29.96 0.00 46.54 2.23
566 567 5.455183 CCAGGCTGGAATGTGATTACATAGA 60.455 44.000 29.96 0.00 46.54 1.98
567 568 6.057533 CAGGCTGGAATGTGATTACATAGAA 58.942 40.000 6.61 0.00 46.54 2.10
568 569 6.204301 CAGGCTGGAATGTGATTACATAGAAG 59.796 42.308 6.61 3.31 46.54 2.85
569 570 6.100279 AGGCTGGAATGTGATTACATAGAAGA 59.900 38.462 3.20 0.00 46.54 2.87
570 571 6.767902 GGCTGGAATGTGATTACATAGAAGAA 59.232 38.462 3.20 0.00 46.54 2.52
571 572 7.283127 GGCTGGAATGTGATTACATAGAAGAAA 59.717 37.037 3.20 0.00 46.54 2.52
572 573 8.125448 GCTGGAATGTGATTACATAGAAGAAAC 58.875 37.037 3.20 0.00 46.54 2.78
573 574 8.506168 TGGAATGTGATTACATAGAAGAAACC 57.494 34.615 3.20 0.05 46.54 3.27
574 575 7.556275 TGGAATGTGATTACATAGAAGAAACCC 59.444 37.037 3.20 0.00 46.54 4.11
575 576 7.556275 GGAATGTGATTACATAGAAGAAACCCA 59.444 37.037 3.20 0.00 46.54 4.51
576 577 7.865706 ATGTGATTACATAGAAGAAACCCAC 57.134 36.000 0.41 0.00 45.45 4.61
577 578 6.177610 TGTGATTACATAGAAGAAACCCACC 58.822 40.000 0.00 0.00 0.00 4.61
578 579 5.589050 GTGATTACATAGAAGAAACCCACCC 59.411 44.000 0.00 0.00 0.00 4.61
579 580 5.251932 TGATTACATAGAAGAAACCCACCCA 59.748 40.000 0.00 0.00 0.00 4.51
580 581 3.721087 ACATAGAAGAAACCCACCCAG 57.279 47.619 0.00 0.00 0.00 4.45
935 936 1.149148 GAGTTTGTTCGACCTCCAGC 58.851 55.000 0.00 0.00 0.00 4.85
936 937 0.250338 AGTTTGTTCGACCTCCAGCC 60.250 55.000 0.00 0.00 0.00 4.85
953 954 0.536460 GCCAGTCCCGGAAGAAACAA 60.536 55.000 0.73 0.00 0.00 2.83
954 955 1.975660 CCAGTCCCGGAAGAAACAAA 58.024 50.000 0.73 0.00 0.00 2.83
955 956 1.607148 CCAGTCCCGGAAGAAACAAAC 59.393 52.381 0.73 0.00 0.00 2.93
956 957 2.294074 CAGTCCCGGAAGAAACAAACA 58.706 47.619 0.73 0.00 0.00 2.83
957 958 2.290641 CAGTCCCGGAAGAAACAAACAG 59.709 50.000 0.73 0.00 0.00 3.16
958 959 1.607148 GTCCCGGAAGAAACAAACAGG 59.393 52.381 0.73 0.00 0.00 4.00
959 960 0.958822 CCCGGAAGAAACAAACAGGG 59.041 55.000 0.73 0.00 0.00 4.45
1012 1016 2.224695 GGATCAGCCATGGACATCATCA 60.225 50.000 18.40 0.00 36.34 3.07
1449 1459 2.029649 ACCTGCAAAGCATTAGCAACTG 60.030 45.455 0.00 0.00 45.49 3.16
1450 1460 2.029649 CCTGCAAAGCATTAGCAACTGT 60.030 45.455 0.00 0.00 45.49 3.55
1458 1468 5.051891 AGCATTAGCAACTGTTTCATCAC 57.948 39.130 0.00 0.00 45.49 3.06
1478 1488 4.288366 TCACCCTGATTCCAAACACAGATA 59.712 41.667 0.00 0.00 32.90 1.98
1490 1502 5.065731 CCAAACACAGATATTGCCTCTTCTC 59.934 44.000 0.00 0.00 0.00 2.87
1492 1504 5.275067 ACACAGATATTGCCTCTTCTCTC 57.725 43.478 0.00 0.00 0.00 3.20
1503 1515 7.621428 TTGCCTCTTCTCTCAATGAATTTAG 57.379 36.000 0.00 0.00 0.00 1.85
1505 1517 7.397221 TGCCTCTTCTCTCAATGAATTTAGAA 58.603 34.615 0.00 0.00 0.00 2.10
1522 1534 9.856488 GAATTTAGAACAATTTCCCTCCTAAAC 57.144 33.333 0.00 0.00 31.28 2.01
1524 1536 9.601810 ATTTAGAACAATTTCCCTCCTAAACTT 57.398 29.630 0.00 0.00 31.28 2.66
1549 1561 7.995289 TCACTCTCAAAATTTTGACAAAGCTA 58.005 30.769 26.01 13.50 41.88 3.32
1556 1568 7.862372 TCAAAATTTTGACAAAGCTACTAGCTG 59.138 33.333 26.01 3.75 45.59 4.24
1573 1585 5.661312 ACTAGCTGACAGGTTACAATCCATA 59.339 40.000 13.22 0.00 0.00 2.74
1578 1590 5.690865 TGACAGGTTACAATCCATAATCCC 58.309 41.667 0.00 0.00 0.00 3.85
1652 1664 7.227512 GGTGTGATTAATAGAAGGATGAAGGTG 59.772 40.741 0.00 0.00 0.00 4.00
1664 1676 7.566879 AGAAGGATGAAGGTGATAGTTACTGAT 59.433 37.037 0.00 0.00 0.00 2.90
1665 1677 7.296628 AGGATGAAGGTGATAGTTACTGATC 57.703 40.000 0.00 0.00 0.00 2.92
1707 1719 7.148356 TGTGTTAGGTCCGTGATATCGATATAC 60.148 40.741 17.76 11.54 0.00 1.47
1758 1770 4.134563 TCTGTGCTCCTGTTTCTTTTACC 58.865 43.478 0.00 0.00 0.00 2.85
1765 1777 5.220989 GCTCCTGTTTCTTTTACCGTTCTTT 60.221 40.000 0.00 0.00 0.00 2.52
1777 1789 9.131416 CTTTTACCGTTCTTTTGTTTTAAGTGT 57.869 29.630 0.00 0.00 0.00 3.55
1793 1805 8.347035 GTTTTAAGTGTAATGCTTACAAGACCA 58.653 33.333 9.41 0.00 46.72 4.02
1811 1823 3.834489 CCATTGCTGGTAGAGTGAGAT 57.166 47.619 0.00 0.00 37.79 2.75
1851 1863 0.809385 TGTCGTACAGCTAGAGCACC 59.191 55.000 4.01 0.00 45.16 5.01
1854 1866 2.031930 GTCGTACAGCTAGAGCACCTAC 59.968 54.545 4.01 0.00 45.16 3.18
1855 1867 1.334243 CGTACAGCTAGAGCACCTACC 59.666 57.143 4.01 0.00 45.16 3.18
1868 1880 1.933853 CACCTACCATAGCGAAAGTGC 59.066 52.381 0.00 0.00 0.00 4.40
1914 1927 7.743749 ACATTATGATCAGCATACTTCTCCTT 58.256 34.615 0.09 0.00 39.14 3.36
1946 1960 7.270793 GGTTGTATCGTGCTAATTATACTCTCG 59.729 40.741 0.00 0.00 0.00 4.04
1953 1971 6.210078 GTGCTAATTATACTCTCGCTTCTGT 58.790 40.000 0.00 0.00 0.00 3.41
1962 1980 0.320247 CTCGCTTCTGTGCCTTCTGT 60.320 55.000 0.00 0.00 0.00 3.41
2090 2111 6.453092 TGTGCCTCTAGTTACTACTTTCAAC 58.547 40.000 0.00 0.00 35.78 3.18
2101 2122 9.561069 AGTTACTACTTTCAACATTGTTCTGAT 57.439 29.630 0.00 0.00 0.00 2.90
2228 2253 6.148811 CAGGTATGTTTCAGTTTCACGGTATT 59.851 38.462 0.00 0.00 0.00 1.89
2238 2263 8.234136 TCAGTTTCACGGTATTAGTATCAGAT 57.766 34.615 0.00 0.00 0.00 2.90
2261 2286 9.869667 AGATTAGTAGTATCAGTGAACATAGGT 57.130 33.333 0.00 0.00 0.00 3.08
2266 2291 8.693625 AGTAGTATCAGTGAACATAGGTTAACC 58.306 37.037 17.41 17.41 38.92 2.85
2312 2337 3.413522 GCAGCTGGCATTTCTGAAC 57.586 52.632 17.12 0.00 43.97 3.18
2329 2354 2.092103 TGAACCAAAGGGCACTAACACT 60.092 45.455 0.00 0.00 37.90 3.55
2331 2356 1.156736 CCAAAGGGCACTAACACTCG 58.843 55.000 0.00 0.00 0.00 4.18
2369 2394 7.636326 ACTTGAAAACTAAACCATCTGTTACG 58.364 34.615 0.00 0.00 35.67 3.18
2376 2401 6.167685 ACTAAACCATCTGTTACGCATAACA 58.832 36.000 5.14 5.14 46.76 2.41
2412 2437 2.803030 AAGAAGGATGATGCAGCACT 57.197 45.000 6.89 0.00 0.00 4.40
2445 2478 4.084171 GGAAAAGTACTTACAAGACGGCAC 60.084 45.833 8.92 0.00 0.00 5.01
2451 2484 1.464608 CTTACAAGACGGCACCATGTG 59.535 52.381 0.00 0.00 36.51 3.21
2489 2522 6.435277 ACATCTGCTATTTTCACTTGGATGTT 59.565 34.615 0.00 0.00 38.28 2.71
2526 2559 5.134202 GCTAATGGCAGTTTAACCTGTTT 57.866 39.130 1.71 0.00 41.35 2.83
2589 2622 2.420372 TGTTTGTTCTGCTTGTGCGTAA 59.580 40.909 0.00 0.00 43.34 3.18
2624 2657 2.110721 ACCTGCCCTCCTGAAAGATTTT 59.889 45.455 0.00 0.00 34.07 1.82
2684 2717 2.618709 AGTTCAACCGAAGAAAAGCAGG 59.381 45.455 0.00 0.00 0.00 4.85
2724 2761 9.745880 ATGTTTATAACGTCTCATGGTACTTAG 57.254 33.333 0.00 0.00 0.00 2.18
2791 2828 3.377172 CCACCATTTTTCAGTACCCGATC 59.623 47.826 0.00 0.00 0.00 3.69
2792 2829 3.063452 CACCATTTTTCAGTACCCGATCG 59.937 47.826 8.51 8.51 0.00 3.69
2799 2836 1.152525 AGTACCCGATCGCCCATCT 60.153 57.895 10.32 1.03 0.00 2.90
2811 2848 3.286353 TCGCCCATCTGCAAATTATTGA 58.714 40.909 0.00 0.00 38.94 2.57
2812 2849 3.890756 TCGCCCATCTGCAAATTATTGAT 59.109 39.130 0.00 0.00 38.94 2.57
2813 2850 4.341806 TCGCCCATCTGCAAATTATTGATT 59.658 37.500 0.00 0.00 38.94 2.57
2816 2853 6.700960 CGCCCATCTGCAAATTATTGATTTTA 59.299 34.615 0.00 0.00 38.94 1.52
2823 2860 9.709495 TCTGCAAATTATTGATTTTATATGGCC 57.291 29.630 0.00 0.00 38.94 5.36
2849 2886 1.210155 GCAAAGGCTAACCAGTGCG 59.790 57.895 0.00 0.00 37.98 5.34
2881 2921 6.915349 TCCACATTTACCTTGTTTTTATCCG 58.085 36.000 0.00 0.00 0.00 4.18
2900 2941 4.013050 TCCGGCAATCAAATCATGTAACA 58.987 39.130 0.00 0.00 0.00 2.41
2918 2959 4.546829 AACATGAAATTTGCAGGCAGAT 57.453 36.364 0.00 0.00 0.00 2.90
3006 3047 7.539034 TGCACTTCTTATCATGGTATAGCTA 57.461 36.000 0.00 0.00 0.00 3.32
3009 3050 8.877779 GCACTTCTTATCATGGTATAGCTAATG 58.122 37.037 0.00 0.00 0.00 1.90
3169 3225 7.341256 GGATGGTATCCTCGGTCAGTATATTAA 59.659 40.741 0.61 0.00 46.19 1.40
3177 3233 9.887629 TCCTCGGTCAGTATATTAATAGACTAG 57.112 37.037 19.60 13.69 33.43 2.57
3178 3234 9.669887 CCTCGGTCAGTATATTAATAGACTAGT 57.330 37.037 19.60 0.00 33.43 2.57
3245 3324 8.428852 AGCCCTTTGTAAAATTTACATTCAAGT 58.571 29.630 17.94 3.04 0.00 3.16
3261 3340 8.546597 ACATTCAAGTTTTAGTTTTTGCAGTT 57.453 26.923 0.00 0.00 0.00 3.16
3327 3406 2.584835 TTGTGCCATTTCAGGTAGCT 57.415 45.000 0.00 0.00 0.00 3.32
3333 3412 2.369394 CCATTTCAGGTAGCTGAACCC 58.631 52.381 31.50 0.00 42.29 4.11
3396 3475 9.751542 TTTTCTCTCTTGTACAAGTCTCTAAAG 57.248 33.333 29.83 19.70 39.38 1.85
3462 3563 6.530120 TGACAGTTTCCAAGCTAGATTTGTA 58.470 36.000 0.00 0.00 0.00 2.41
3496 3597 2.462565 GTCTTGTTTTAACTTGCGTGCG 59.537 45.455 0.00 0.00 0.00 5.34
3564 3665 6.630203 TGTTGTAACACCTATACCCTGAAT 57.370 37.500 0.00 0.00 33.17 2.57
3566 3667 7.107542 TGTTGTAACACCTATACCCTGAATTC 58.892 38.462 0.00 0.00 33.17 2.17
3567 3668 7.037873 TGTTGTAACACCTATACCCTGAATTCT 60.038 37.037 7.05 0.00 33.17 2.40
3568 3669 6.884832 TGTAACACCTATACCCTGAATTCTG 58.115 40.000 7.05 6.17 0.00 3.02
3569 3670 6.670464 TGTAACACCTATACCCTGAATTCTGA 59.330 38.462 13.45 0.00 0.00 3.27
3570 3671 6.636454 AACACCTATACCCTGAATTCTGAA 57.364 37.500 13.45 0.00 0.00 3.02
3572 3673 6.415573 ACACCTATACCCTGAATTCTGAAAC 58.584 40.000 13.45 0.00 0.00 2.78
3573 3674 5.523916 CACCTATACCCTGAATTCTGAAACG 59.476 44.000 13.45 1.62 0.00 3.60
3581 3682 5.645497 CCCTGAATTCTGAAACGAAGAATCT 59.355 40.000 13.45 0.00 42.26 2.40
3587 3688 2.731451 CTGAAACGAAGAATCTGTCGCA 59.269 45.455 12.34 4.96 40.95 5.10
3720 3842 4.285807 TCTGATGGTGAAAACAAACACG 57.714 40.909 0.00 0.00 37.82 4.49
3781 3903 4.333926 ACATCTTATTTTCTCGGCTTCAGC 59.666 41.667 0.00 0.00 41.14 4.26
3784 3906 2.029838 ATTTTCTCGGCTTCAGCGAT 57.970 45.000 0.00 0.00 43.26 4.58
3787 3909 1.604147 TTCTCGGCTTCAGCGATCCA 61.604 55.000 0.00 0.00 43.26 3.41
3832 3954 1.446907 CAAGTGCCTAGACCTGCAAG 58.553 55.000 0.00 0.00 39.57 4.01
3849 3971 6.535963 CTGCAAGGAAGGAAGGAAATTATT 57.464 37.500 0.00 0.00 0.00 1.40
3850 3972 7.645058 CTGCAAGGAAGGAAGGAAATTATTA 57.355 36.000 0.00 0.00 0.00 0.98
3851 3973 7.645058 TGCAAGGAAGGAAGGAAATTATTAG 57.355 36.000 0.00 0.00 0.00 1.73
3852 3974 6.607198 TGCAAGGAAGGAAGGAAATTATTAGG 59.393 38.462 0.00 0.00 0.00 2.69
3853 3975 6.040955 GCAAGGAAGGAAGGAAATTATTAGGG 59.959 42.308 0.00 0.00 0.00 3.53
3889 4011 4.098349 GTCAGATGAGCACAAGAGAGAGAT 59.902 45.833 0.00 0.00 0.00 2.75
3890 4012 4.710865 TCAGATGAGCACAAGAGAGAGATT 59.289 41.667 0.00 0.00 0.00 2.40
3891 4013 5.187381 TCAGATGAGCACAAGAGAGAGATTT 59.813 40.000 0.00 0.00 0.00 2.17
3892 4014 5.292345 CAGATGAGCACAAGAGAGAGATTTG 59.708 44.000 0.00 0.00 0.00 2.32
3893 4015 4.879197 TGAGCACAAGAGAGAGATTTGA 57.121 40.909 0.00 0.00 0.00 2.69
3894 4016 4.818642 TGAGCACAAGAGAGAGATTTGAG 58.181 43.478 0.00 0.00 0.00 3.02
3895 4017 4.525874 TGAGCACAAGAGAGAGATTTGAGA 59.474 41.667 0.00 0.00 0.00 3.27
3897 4019 5.862845 AGCACAAGAGAGAGATTTGAGAAA 58.137 37.500 0.00 0.00 0.00 2.52
3898 4020 6.474630 AGCACAAGAGAGAGATTTGAGAAAT 58.525 36.000 0.00 0.00 0.00 2.17
3983 4147 1.334149 GCGTTGAAGAAGCAGTTCCAC 60.334 52.381 0.00 0.00 32.48 4.02
3985 4149 2.210116 GTTGAAGAAGCAGTTCCACGA 58.790 47.619 0.00 0.00 32.48 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.389755 CGAAGGTGAGATCTGATAGAGATAATA 57.610 37.037 0.00 0.00 41.91 0.98
45 46 7.888021 ACGAAGGTGAGATCTGATAGAGATAAT 59.112 37.037 0.00 0.00 41.91 1.28
46 47 7.227873 ACGAAGGTGAGATCTGATAGAGATAA 58.772 38.462 0.00 0.00 41.91 1.75
47 48 6.774673 ACGAAGGTGAGATCTGATAGAGATA 58.225 40.000 0.00 0.00 41.91 1.98
48 49 5.630121 ACGAAGGTGAGATCTGATAGAGAT 58.370 41.667 0.00 0.00 44.78 2.75
49 50 5.042463 ACGAAGGTGAGATCTGATAGAGA 57.958 43.478 0.00 0.00 34.25 3.10
50 51 6.485313 ACTTACGAAGGTGAGATCTGATAGAG 59.515 42.308 0.00 0.00 34.13 2.43
51 52 6.261158 CACTTACGAAGGTGAGATCTGATAGA 59.739 42.308 0.00 0.00 35.69 1.98
52 53 6.261158 TCACTTACGAAGGTGAGATCTGATAG 59.739 42.308 0.00 0.00 37.52 2.08
53 54 6.038382 GTCACTTACGAAGGTGAGATCTGATA 59.962 42.308 0.00 0.00 42.13 2.15
54 55 4.950475 TCACTTACGAAGGTGAGATCTGAT 59.050 41.667 0.00 0.00 37.52 2.90
55 56 4.156190 GTCACTTACGAAGGTGAGATCTGA 59.844 45.833 0.00 0.00 42.13 3.27
56 57 4.416620 GTCACTTACGAAGGTGAGATCTG 58.583 47.826 0.00 0.00 42.13 2.90
57 58 3.444388 GGTCACTTACGAAGGTGAGATCT 59.556 47.826 0.00 0.00 42.13 2.75
58 59 3.731264 CGGTCACTTACGAAGGTGAGATC 60.731 52.174 8.69 0.00 42.13 2.75
59 60 2.163815 CGGTCACTTACGAAGGTGAGAT 59.836 50.000 8.69 0.00 42.13 2.75
60 61 1.538512 CGGTCACTTACGAAGGTGAGA 59.461 52.381 8.69 0.00 42.13 3.27
61 62 1.268899 ACGGTCACTTACGAAGGTGAG 59.731 52.381 8.69 3.18 42.13 3.51
62 63 1.001048 CACGGTCACTTACGAAGGTGA 60.001 52.381 0.00 0.00 39.71 4.02
63 64 1.001048 TCACGGTCACTTACGAAGGTG 60.001 52.381 0.00 0.00 35.06 4.00
64 65 1.321474 TCACGGTCACTTACGAAGGT 58.679 50.000 0.00 0.00 0.00 3.50
65 66 2.325761 CTTCACGGTCACTTACGAAGG 58.674 52.381 0.00 0.00 0.00 3.46
66 67 2.325761 CCTTCACGGTCACTTACGAAG 58.674 52.381 0.00 0.00 0.00 3.79
67 68 1.000060 CCCTTCACGGTCACTTACGAA 60.000 52.381 0.00 0.00 0.00 3.85
68 69 0.599558 CCCTTCACGGTCACTTACGA 59.400 55.000 0.00 0.00 0.00 3.43
69 70 0.599558 TCCCTTCACGGTCACTTACG 59.400 55.000 0.00 0.00 0.00 3.18
70 71 3.000727 CAATCCCTTCACGGTCACTTAC 58.999 50.000 0.00 0.00 0.00 2.34
71 72 2.901192 TCAATCCCTTCACGGTCACTTA 59.099 45.455 0.00 0.00 0.00 2.24
72 73 1.697432 TCAATCCCTTCACGGTCACTT 59.303 47.619 0.00 0.00 0.00 3.16
73 74 1.002087 GTCAATCCCTTCACGGTCACT 59.998 52.381 0.00 0.00 0.00 3.41
74 75 1.270625 TGTCAATCCCTTCACGGTCAC 60.271 52.381 0.00 0.00 0.00 3.67
75 76 1.052617 TGTCAATCCCTTCACGGTCA 58.947 50.000 0.00 0.00 0.00 4.02
76 77 1.804748 GTTGTCAATCCCTTCACGGTC 59.195 52.381 0.00 0.00 0.00 4.79
77 78 1.544759 GGTTGTCAATCCCTTCACGGT 60.545 52.381 0.00 0.00 0.00 4.83
78 79 1.165270 GGTTGTCAATCCCTTCACGG 58.835 55.000 0.00 0.00 0.00 4.94
79 80 1.165270 GGGTTGTCAATCCCTTCACG 58.835 55.000 3.15 0.00 40.48 4.35
80 81 1.545841 GGGGTTGTCAATCCCTTCAC 58.454 55.000 24.72 0.00 43.00 3.18
85 86 1.763968 GCTTAGGGGTTGTCAATCCC 58.236 55.000 24.64 24.64 42.73 3.85
86 87 1.339727 ACGCTTAGGGGTTGTCAATCC 60.340 52.381 6.29 6.29 34.95 3.01
87 88 2.109425 ACGCTTAGGGGTTGTCAATC 57.891 50.000 0.55 0.00 34.95 2.67
88 89 2.579410 AACGCTTAGGGGTTGTCAAT 57.421 45.000 6.49 0.00 44.93 2.57
95 96 1.602605 GCAACCAACGCTTAGGGGT 60.603 57.895 0.55 0.00 40.41 4.95
96 97 2.686816 CGCAACCAACGCTTAGGGG 61.687 63.158 0.55 0.00 0.00 4.79
97 98 1.635663 CTCGCAACCAACGCTTAGGG 61.636 60.000 0.00 0.00 0.00 3.53
98 99 0.949105 ACTCGCAACCAACGCTTAGG 60.949 55.000 0.00 0.00 0.00 2.69
99 100 1.654105 CTACTCGCAACCAACGCTTAG 59.346 52.381 0.00 0.00 0.00 2.18
100 101 1.705256 CTACTCGCAACCAACGCTTA 58.295 50.000 0.00 0.00 0.00 3.09
101 102 1.566018 GCTACTCGCAACCAACGCTT 61.566 55.000 0.00 0.00 38.92 4.68
102 103 2.027625 GCTACTCGCAACCAACGCT 61.028 57.895 0.00 0.00 38.92 5.07
103 104 0.734942 TAGCTACTCGCAACCAACGC 60.735 55.000 0.00 0.00 42.61 4.84
104 105 1.852895 GATAGCTACTCGCAACCAACG 59.147 52.381 0.00 0.00 42.61 4.10
105 106 1.852895 CGATAGCTACTCGCAACCAAC 59.147 52.381 0.00 0.00 42.61 3.77
106 107 2.203800 CGATAGCTACTCGCAACCAA 57.796 50.000 0.00 0.00 42.61 3.67
107 108 3.938653 CGATAGCTACTCGCAACCA 57.061 52.632 0.00 0.00 42.61 3.67
125 126 1.298859 CCCTCGTACCTGCACAAAGC 61.299 60.000 0.00 0.00 45.96 3.51
126 127 0.320374 TCCCTCGTACCTGCACAAAG 59.680 55.000 0.00 0.00 0.00 2.77
127 128 0.034337 GTCCCTCGTACCTGCACAAA 59.966 55.000 0.00 0.00 0.00 2.83
128 129 0.830444 AGTCCCTCGTACCTGCACAA 60.830 55.000 0.00 0.00 0.00 3.33
129 130 0.830444 AAGTCCCTCGTACCTGCACA 60.830 55.000 0.00 0.00 0.00 4.57
130 131 0.389948 CAAGTCCCTCGTACCTGCAC 60.390 60.000 0.00 0.00 0.00 4.57
131 132 1.972198 CAAGTCCCTCGTACCTGCA 59.028 57.895 0.00 0.00 0.00 4.41
132 133 1.448013 GCAAGTCCCTCGTACCTGC 60.448 63.158 0.00 0.00 0.00 4.85
133 134 1.153823 CGCAAGTCCCTCGTACCTG 60.154 63.158 0.00 0.00 0.00 4.00
134 135 3.003113 GCGCAAGTCCCTCGTACCT 62.003 63.158 0.30 0.00 41.68 3.08
135 136 2.508663 GCGCAAGTCCCTCGTACC 60.509 66.667 0.30 0.00 41.68 3.34
136 137 2.879462 CGCGCAAGTCCCTCGTAC 60.879 66.667 8.75 0.00 41.68 3.67
137 138 3.332493 GACGCGCAAGTCCCTCGTA 62.332 63.158 5.73 0.00 41.68 3.43
138 139 4.719369 GACGCGCAAGTCCCTCGT 62.719 66.667 5.73 0.00 41.68 4.18
139 140 4.421479 AGACGCGCAAGTCCCTCG 62.421 66.667 5.73 0.00 41.83 4.63
140 141 2.507324 GAGACGCGCAAGTCCCTC 60.507 66.667 5.73 0.00 41.83 4.30
141 142 4.070552 GGAGACGCGCAAGTCCCT 62.071 66.667 5.73 0.00 41.83 4.20
142 143 2.707849 TAGGAGACGCGCAAGTCCC 61.708 63.158 5.73 10.94 41.83 4.46
143 144 1.516603 GTAGGAGACGCGCAAGTCC 60.517 63.158 5.73 9.66 41.83 3.85
144 145 0.798771 CAGTAGGAGACGCGCAAGTC 60.799 60.000 5.73 7.89 41.23 3.01
145 146 1.213013 CAGTAGGAGACGCGCAAGT 59.787 57.895 5.73 0.00 41.68 3.16
146 147 1.517257 CCAGTAGGAGACGCGCAAG 60.517 63.158 5.73 0.00 36.89 4.01
147 148 1.974875 TCCAGTAGGAGACGCGCAA 60.975 57.895 5.73 0.00 39.61 4.85
148 149 2.360726 TCCAGTAGGAGACGCGCA 60.361 61.111 5.73 0.00 39.61 6.09
157 158 5.373812 AACCAAGGTATCAATCCAGTAGG 57.626 43.478 0.00 0.00 0.00 3.18
158 159 8.801882 TTAAAACCAAGGTATCAATCCAGTAG 57.198 34.615 0.00 0.00 0.00 2.57
159 160 9.589461 TTTTAAAACCAAGGTATCAATCCAGTA 57.411 29.630 0.00 0.00 0.00 2.74
160 161 8.485578 TTTTAAAACCAAGGTATCAATCCAGT 57.514 30.769 0.00 0.00 0.00 4.00
183 184 7.506328 AGCGTAAGTATTTTCCTCAGTTTTT 57.494 32.000 0.00 0.00 41.68 1.94
184 185 7.876582 AGTAGCGTAAGTATTTTCCTCAGTTTT 59.123 33.333 0.00 0.00 41.68 2.43
185 186 7.331193 CAGTAGCGTAAGTATTTTCCTCAGTTT 59.669 37.037 0.00 0.00 41.68 2.66
186 187 6.812160 CAGTAGCGTAAGTATTTTCCTCAGTT 59.188 38.462 0.00 0.00 41.68 3.16
187 188 6.071503 ACAGTAGCGTAAGTATTTTCCTCAGT 60.072 38.462 0.00 0.00 41.68 3.41
188 189 6.253727 CACAGTAGCGTAAGTATTTTCCTCAG 59.746 42.308 0.00 0.00 41.68 3.35
189 190 6.097356 CACAGTAGCGTAAGTATTTTCCTCA 58.903 40.000 0.00 0.00 41.68 3.86
190 191 5.005490 GCACAGTAGCGTAAGTATTTTCCTC 59.995 44.000 0.00 0.00 41.68 3.71
191 192 4.868734 GCACAGTAGCGTAAGTATTTTCCT 59.131 41.667 0.00 0.00 41.68 3.36
192 193 4.868734 AGCACAGTAGCGTAAGTATTTTCC 59.131 41.667 0.00 0.00 40.15 3.13
193 194 5.724223 GCAGCACAGTAGCGTAAGTATTTTC 60.724 44.000 0.00 0.00 40.15 2.29
194 195 4.092968 GCAGCACAGTAGCGTAAGTATTTT 59.907 41.667 0.00 0.00 40.15 1.82
195 196 3.617263 GCAGCACAGTAGCGTAAGTATTT 59.383 43.478 0.00 0.00 40.15 1.40
196 197 3.187700 GCAGCACAGTAGCGTAAGTATT 58.812 45.455 0.00 0.00 40.15 1.89
197 198 2.165641 TGCAGCACAGTAGCGTAAGTAT 59.834 45.455 0.00 0.00 40.15 2.12
198 199 1.542472 TGCAGCACAGTAGCGTAAGTA 59.458 47.619 0.00 0.00 40.15 2.24
199 200 0.317160 TGCAGCACAGTAGCGTAAGT 59.683 50.000 0.00 0.00 40.15 2.24
200 201 1.590238 GATGCAGCACAGTAGCGTAAG 59.410 52.381 0.00 0.00 40.15 2.34
201 202 1.067213 TGATGCAGCACAGTAGCGTAA 60.067 47.619 0.00 0.00 40.15 3.18
202 203 0.530288 TGATGCAGCACAGTAGCGTA 59.470 50.000 0.00 0.00 40.15 4.42
203 204 0.107993 ATGATGCAGCACAGTAGCGT 60.108 50.000 6.89 0.00 40.15 5.07
204 205 0.580578 GATGATGCAGCACAGTAGCG 59.419 55.000 6.89 0.00 40.15 4.26
205 206 0.942962 GGATGATGCAGCACAGTAGC 59.057 55.000 6.89 0.00 0.00 3.58
206 207 2.102757 AGAGGATGATGCAGCACAGTAG 59.897 50.000 6.89 0.00 0.00 2.57
207 208 2.102084 GAGAGGATGATGCAGCACAGTA 59.898 50.000 6.89 0.00 0.00 2.74
208 209 0.910338 AGAGGATGATGCAGCACAGT 59.090 50.000 6.89 0.00 0.00 3.55
209 210 1.584175 GAGAGGATGATGCAGCACAG 58.416 55.000 6.89 0.00 0.00 3.66
210 211 0.179702 GGAGAGGATGATGCAGCACA 59.820 55.000 6.89 0.00 0.00 4.57
211 212 0.469070 AGGAGAGGATGATGCAGCAC 59.531 55.000 6.89 0.81 0.00 4.40
212 213 1.210538 AAGGAGAGGATGATGCAGCA 58.789 50.000 7.31 7.31 0.00 4.41
213 214 2.345124 AAAGGAGAGGATGATGCAGC 57.655 50.000 0.00 0.00 0.00 5.25
214 215 2.871022 CGAAAAGGAGAGGATGATGCAG 59.129 50.000 0.00 0.00 0.00 4.41
215 216 2.420547 CCGAAAAGGAGAGGATGATGCA 60.421 50.000 0.00 0.00 45.00 3.96
216 217 2.158900 TCCGAAAAGGAGAGGATGATGC 60.159 50.000 0.00 0.00 45.98 3.91
217 218 3.827008 TCCGAAAAGGAGAGGATGATG 57.173 47.619 0.00 0.00 45.98 3.07
228 229 2.414161 GCGTTGGATTTCTCCGAAAAGG 60.414 50.000 0.00 0.00 45.37 3.11
229 230 2.225491 TGCGTTGGATTTCTCCGAAAAG 59.775 45.455 0.00 0.00 45.37 2.27
230 231 2.222886 TGCGTTGGATTTCTCCGAAAA 58.777 42.857 0.00 0.00 45.37 2.29
231 232 1.885560 TGCGTTGGATTTCTCCGAAA 58.114 45.000 0.00 0.00 45.37 3.46
232 233 1.804151 CTTGCGTTGGATTTCTCCGAA 59.196 47.619 0.00 0.00 45.37 4.30
233 234 1.438651 CTTGCGTTGGATTTCTCCGA 58.561 50.000 0.00 0.00 45.37 4.55
234 235 0.179189 GCTTGCGTTGGATTTCTCCG 60.179 55.000 0.00 0.00 45.37 4.63
235 236 1.131315 GAGCTTGCGTTGGATTTCTCC 59.869 52.381 0.00 0.00 42.45 3.71
236 237 1.201965 CGAGCTTGCGTTGGATTTCTC 60.202 52.381 0.00 0.00 0.00 2.87
237 238 0.798776 CGAGCTTGCGTTGGATTTCT 59.201 50.000 0.00 0.00 0.00 2.52
238 239 0.796312 TCGAGCTTGCGTTGGATTTC 59.204 50.000 0.00 0.00 0.00 2.17
239 240 0.798776 CTCGAGCTTGCGTTGGATTT 59.201 50.000 0.00 0.00 0.00 2.17
240 241 0.037326 TCTCGAGCTTGCGTTGGATT 60.037 50.000 7.81 0.00 0.00 3.01
241 242 0.737715 GTCTCGAGCTTGCGTTGGAT 60.738 55.000 7.81 0.00 0.00 3.41
242 243 1.372997 GTCTCGAGCTTGCGTTGGA 60.373 57.895 7.81 0.00 0.00 3.53
243 244 2.720758 CGTCTCGAGCTTGCGTTGG 61.721 63.158 7.81 0.00 0.00 3.77
244 245 0.728129 TACGTCTCGAGCTTGCGTTG 60.728 55.000 21.68 0.00 37.05 4.10
245 246 0.454620 CTACGTCTCGAGCTTGCGTT 60.455 55.000 21.68 11.28 37.05 4.84
246 247 1.134901 CTACGTCTCGAGCTTGCGT 59.865 57.895 20.81 20.81 39.23 5.24
247 248 2.218239 GCTACGTCTCGAGCTTGCG 61.218 63.158 7.81 11.68 35.73 4.85
248 249 1.136872 CTGCTACGTCTCGAGCTTGC 61.137 60.000 7.81 8.02 39.54 4.01
249 250 0.169230 ACTGCTACGTCTCGAGCTTG 59.831 55.000 7.81 2.01 39.54 4.01
250 251 0.169230 CACTGCTACGTCTCGAGCTT 59.831 55.000 7.81 0.00 39.54 3.74
251 252 0.673956 TCACTGCTACGTCTCGAGCT 60.674 55.000 7.81 0.00 39.54 4.09
252 253 0.247894 CTCACTGCTACGTCTCGAGC 60.248 60.000 7.81 0.00 39.25 5.03
253 254 1.061421 GACTCACTGCTACGTCTCGAG 59.939 57.143 5.93 5.93 0.00 4.04
254 255 1.077123 GACTCACTGCTACGTCTCGA 58.923 55.000 0.00 0.00 0.00 4.04
255 256 0.796927 TGACTCACTGCTACGTCTCG 59.203 55.000 0.00 0.00 0.00 4.04
256 257 4.617808 TTATGACTCACTGCTACGTCTC 57.382 45.455 0.00 0.00 0.00 3.36
257 258 4.202060 CCATTATGACTCACTGCTACGTCT 60.202 45.833 0.00 0.00 0.00 4.18
258 259 4.045104 CCATTATGACTCACTGCTACGTC 58.955 47.826 0.00 0.00 0.00 4.34
259 260 3.181475 CCCATTATGACTCACTGCTACGT 60.181 47.826 0.00 0.00 0.00 3.57
260 261 3.181475 ACCCATTATGACTCACTGCTACG 60.181 47.826 0.00 0.00 0.00 3.51
261 262 4.122776 CACCCATTATGACTCACTGCTAC 58.877 47.826 0.00 0.00 0.00 3.58
262 263 3.432186 GCACCCATTATGACTCACTGCTA 60.432 47.826 0.00 0.00 0.00 3.49
263 264 2.681976 GCACCCATTATGACTCACTGCT 60.682 50.000 0.00 0.00 0.00 4.24
264 265 1.672881 GCACCCATTATGACTCACTGC 59.327 52.381 0.00 0.00 0.00 4.40
265 266 2.292267 GGCACCCATTATGACTCACTG 58.708 52.381 0.00 0.00 0.00 3.66
266 267 1.134401 CGGCACCCATTATGACTCACT 60.134 52.381 0.00 0.00 0.00 3.41
267 268 1.299541 CGGCACCCATTATGACTCAC 58.700 55.000 0.00 0.00 0.00 3.51
268 269 0.463654 GCGGCACCCATTATGACTCA 60.464 55.000 0.00 0.00 0.00 3.41
269 270 1.166531 GGCGGCACCCATTATGACTC 61.167 60.000 3.07 0.00 0.00 3.36
270 271 1.152963 GGCGGCACCCATTATGACT 60.153 57.895 3.07 0.00 0.00 3.41
271 272 1.034838 TTGGCGGCACCCATTATGAC 61.035 55.000 12.92 0.00 37.83 3.06
272 273 0.751277 CTTGGCGGCACCCATTATGA 60.751 55.000 12.92 0.00 37.83 2.15
273 274 1.735360 CTTGGCGGCACCCATTATG 59.265 57.895 12.92 0.00 37.83 1.90
274 275 1.455587 CCTTGGCGGCACCCATTAT 60.456 57.895 12.92 0.00 37.83 1.28
275 276 2.044451 CCTTGGCGGCACCCATTA 60.044 61.111 12.92 0.00 37.83 1.90
284 285 1.971505 TATCAGAGTGGCCTTGGCGG 61.972 60.000 3.32 0.00 0.00 6.13
285 286 0.811616 GTATCAGAGTGGCCTTGGCG 60.812 60.000 3.32 0.00 0.00 5.69
286 287 0.464554 GGTATCAGAGTGGCCTTGGC 60.465 60.000 3.32 2.49 0.00 4.52
287 288 0.181350 GGGTATCAGAGTGGCCTTGG 59.819 60.000 3.32 0.00 0.00 3.61
288 289 0.181350 GGGGTATCAGAGTGGCCTTG 59.819 60.000 3.32 0.00 0.00 3.61
289 290 0.044855 AGGGGTATCAGAGTGGCCTT 59.955 55.000 3.32 0.00 0.00 4.35
290 291 0.941963 TAGGGGTATCAGAGTGGCCT 59.058 55.000 3.32 0.00 0.00 5.19
291 292 1.694696 CTTAGGGGTATCAGAGTGGCC 59.305 57.143 0.00 0.00 0.00 5.36
292 293 2.365941 GACTTAGGGGTATCAGAGTGGC 59.634 54.545 0.00 0.00 0.00 5.01
293 294 3.385111 GTGACTTAGGGGTATCAGAGTGG 59.615 52.174 0.00 0.00 0.00 4.00
294 295 4.282496 AGTGACTTAGGGGTATCAGAGTG 58.718 47.826 0.00 0.00 0.00 3.51
295 296 4.611564 AGTGACTTAGGGGTATCAGAGT 57.388 45.455 0.00 0.00 0.00 3.24
296 297 4.956700 TGAAGTGACTTAGGGGTATCAGAG 59.043 45.833 0.00 0.00 0.00 3.35
297 298 4.942944 TGAAGTGACTTAGGGGTATCAGA 58.057 43.478 0.00 0.00 0.00 3.27
298 299 5.453903 CCATGAAGTGACTTAGGGGTATCAG 60.454 48.000 0.00 0.00 0.00 2.90
299 300 4.408921 CCATGAAGTGACTTAGGGGTATCA 59.591 45.833 0.00 0.00 0.00 2.15
300 301 4.743955 GCCATGAAGTGACTTAGGGGTATC 60.744 50.000 0.00 0.00 0.00 2.24
301 302 3.136626 GCCATGAAGTGACTTAGGGGTAT 59.863 47.826 0.00 0.00 0.00 2.73
302 303 2.504175 GCCATGAAGTGACTTAGGGGTA 59.496 50.000 0.00 0.00 0.00 3.69
303 304 1.282157 GCCATGAAGTGACTTAGGGGT 59.718 52.381 0.00 0.00 0.00 4.95
304 305 1.561542 AGCCATGAAGTGACTTAGGGG 59.438 52.381 0.00 0.95 0.00 4.79
305 306 4.080863 AGTTAGCCATGAAGTGACTTAGGG 60.081 45.833 0.00 1.33 0.00 3.53
306 307 5.091261 AGTTAGCCATGAAGTGACTTAGG 57.909 43.478 0.00 2.13 0.00 2.69
307 308 6.128172 CCAAAGTTAGCCATGAAGTGACTTAG 60.128 42.308 0.00 0.00 0.00 2.18
308 309 5.705441 CCAAAGTTAGCCATGAAGTGACTTA 59.295 40.000 0.00 0.00 0.00 2.24
309 310 4.520492 CCAAAGTTAGCCATGAAGTGACTT 59.480 41.667 0.00 0.00 0.00 3.01
310 311 4.074970 CCAAAGTTAGCCATGAAGTGACT 58.925 43.478 0.00 0.00 0.00 3.41
311 312 3.821033 ACCAAAGTTAGCCATGAAGTGAC 59.179 43.478 0.00 0.00 0.00 3.67
312 313 4.098914 ACCAAAGTTAGCCATGAAGTGA 57.901 40.909 0.00 0.00 0.00 3.41
313 314 4.396166 CCTACCAAAGTTAGCCATGAAGTG 59.604 45.833 0.00 0.00 0.00 3.16
314 315 4.042934 ACCTACCAAAGTTAGCCATGAAGT 59.957 41.667 0.00 0.00 0.00 3.01
315 316 4.589908 ACCTACCAAAGTTAGCCATGAAG 58.410 43.478 0.00 0.00 0.00 3.02
316 317 4.650972 ACCTACCAAAGTTAGCCATGAA 57.349 40.909 0.00 0.00 0.00 2.57
317 318 4.042311 TCAACCTACCAAAGTTAGCCATGA 59.958 41.667 0.00 0.00 0.00 3.07
318 319 4.331968 TCAACCTACCAAAGTTAGCCATG 58.668 43.478 0.00 0.00 0.00 3.66
319 320 4.650972 TCAACCTACCAAAGTTAGCCAT 57.349 40.909 0.00 0.00 0.00 4.40
320 321 4.440826 TTCAACCTACCAAAGTTAGCCA 57.559 40.909 0.00 0.00 0.00 4.75
321 322 6.849502 GTTATTCAACCTACCAAAGTTAGCC 58.150 40.000 0.00 0.00 0.00 3.93
346 347 1.334329 GCCTAACCAAACCGTTGTTCG 60.334 52.381 0.00 0.00 32.15 3.95
347 348 1.951602 AGCCTAACCAAACCGTTGTTC 59.048 47.619 0.00 0.00 32.15 3.18
348 349 1.951602 GAGCCTAACCAAACCGTTGTT 59.048 47.619 0.00 0.00 35.82 2.83
349 350 1.142262 AGAGCCTAACCAAACCGTTGT 59.858 47.619 0.00 0.00 32.40 3.32
350 351 1.535462 CAGAGCCTAACCAAACCGTTG 59.465 52.381 0.00 0.00 34.25 4.10
351 352 1.544759 CCAGAGCCTAACCAAACCGTT 60.545 52.381 0.00 0.00 0.00 4.44
352 353 0.036306 CCAGAGCCTAACCAAACCGT 59.964 55.000 0.00 0.00 0.00 4.83
353 354 0.036306 ACCAGAGCCTAACCAAACCG 59.964 55.000 0.00 0.00 0.00 4.44
354 355 1.822506 GACCAGAGCCTAACCAAACC 58.177 55.000 0.00 0.00 0.00 3.27
355 356 1.439679 CGACCAGAGCCTAACCAAAC 58.560 55.000 0.00 0.00 0.00 2.93
356 357 0.323629 CCGACCAGAGCCTAACCAAA 59.676 55.000 0.00 0.00 0.00 3.28
357 358 0.543410 TCCGACCAGAGCCTAACCAA 60.543 55.000 0.00 0.00 0.00 3.67
358 359 0.543410 TTCCGACCAGAGCCTAACCA 60.543 55.000 0.00 0.00 0.00 3.67
359 360 0.175989 CTTCCGACCAGAGCCTAACC 59.824 60.000 0.00 0.00 0.00 2.85
360 361 0.896226 ACTTCCGACCAGAGCCTAAC 59.104 55.000 0.00 0.00 0.00 2.34
361 362 1.183549 GACTTCCGACCAGAGCCTAA 58.816 55.000 0.00 0.00 0.00 2.69
362 363 0.039180 TGACTTCCGACCAGAGCCTA 59.961 55.000 0.00 0.00 0.00 3.93
363 364 0.616111 ATGACTTCCGACCAGAGCCT 60.616 55.000 0.00 0.00 0.00 4.58
364 365 0.460987 CATGACTTCCGACCAGAGCC 60.461 60.000 0.00 0.00 0.00 4.70
365 366 0.532573 TCATGACTTCCGACCAGAGC 59.467 55.000 0.00 0.00 0.00 4.09
366 367 2.493675 TCTTCATGACTTCCGACCAGAG 59.506 50.000 0.00 0.00 0.00 3.35
367 368 2.525368 TCTTCATGACTTCCGACCAGA 58.475 47.619 0.00 0.00 0.00 3.86
368 369 3.533606 ATCTTCATGACTTCCGACCAG 57.466 47.619 0.00 0.00 0.00 4.00
369 370 3.007940 ACAATCTTCATGACTTCCGACCA 59.992 43.478 0.00 0.00 0.00 4.02
370 371 3.600388 ACAATCTTCATGACTTCCGACC 58.400 45.455 0.00 0.00 0.00 4.79
371 372 4.142816 CCAACAATCTTCATGACTTCCGAC 60.143 45.833 0.00 0.00 0.00 4.79
372 373 4.002982 CCAACAATCTTCATGACTTCCGA 58.997 43.478 0.00 0.00 0.00 4.55
373 374 4.002982 TCCAACAATCTTCATGACTTCCG 58.997 43.478 0.00 0.00 0.00 4.30
374 375 4.142816 CGTCCAACAATCTTCATGACTTCC 60.143 45.833 0.00 0.00 0.00 3.46
375 376 4.690748 TCGTCCAACAATCTTCATGACTTC 59.309 41.667 0.00 0.00 0.00 3.01
376 377 4.641396 TCGTCCAACAATCTTCATGACTT 58.359 39.130 0.00 0.00 0.00 3.01
377 378 4.021104 TCTCGTCCAACAATCTTCATGACT 60.021 41.667 0.00 0.00 0.00 3.41
378 379 4.245660 TCTCGTCCAACAATCTTCATGAC 58.754 43.478 0.00 0.00 0.00 3.06
379 380 4.535526 TCTCGTCCAACAATCTTCATGA 57.464 40.909 0.00 0.00 0.00 3.07
380 381 5.122869 ACAATCTCGTCCAACAATCTTCATG 59.877 40.000 0.00 0.00 0.00 3.07
381 382 5.122869 CACAATCTCGTCCAACAATCTTCAT 59.877 40.000 0.00 0.00 0.00 2.57
382 383 4.452114 CACAATCTCGTCCAACAATCTTCA 59.548 41.667 0.00 0.00 0.00 3.02
383 384 4.690748 TCACAATCTCGTCCAACAATCTTC 59.309 41.667 0.00 0.00 0.00 2.87
384 385 4.641396 TCACAATCTCGTCCAACAATCTT 58.359 39.130 0.00 0.00 0.00 2.40
385 386 4.248859 CTCACAATCTCGTCCAACAATCT 58.751 43.478 0.00 0.00 0.00 2.40
386 387 3.181516 GCTCACAATCTCGTCCAACAATC 60.182 47.826 0.00 0.00 0.00 2.67
387 388 2.744202 GCTCACAATCTCGTCCAACAAT 59.256 45.455 0.00 0.00 0.00 2.71
388 389 2.143122 GCTCACAATCTCGTCCAACAA 58.857 47.619 0.00 0.00 0.00 2.83
389 390 1.608025 GGCTCACAATCTCGTCCAACA 60.608 52.381 0.00 0.00 0.00 3.33
390 391 1.079503 GGCTCACAATCTCGTCCAAC 58.920 55.000 0.00 0.00 0.00 3.77
391 392 0.976641 AGGCTCACAATCTCGTCCAA 59.023 50.000 0.00 0.00 0.00 3.53
392 393 0.976641 AAGGCTCACAATCTCGTCCA 59.023 50.000 0.00 0.00 0.00 4.02
393 394 2.961526 TAAGGCTCACAATCTCGTCC 57.038 50.000 0.00 0.00 0.00 4.79
394 395 4.688021 AGATTAAGGCTCACAATCTCGTC 58.312 43.478 11.21 0.00 34.67 4.20
395 396 4.744795 AGATTAAGGCTCACAATCTCGT 57.255 40.909 11.21 0.00 34.67 4.18
396 397 5.582269 TCAAAGATTAAGGCTCACAATCTCG 59.418 40.000 15.28 11.43 37.90 4.04
397 398 6.597280 ACTCAAAGATTAAGGCTCACAATCTC 59.403 38.462 15.28 0.00 37.90 2.75
398 399 6.373774 CACTCAAAGATTAAGGCTCACAATCT 59.626 38.462 11.21 11.21 39.99 2.40
399 400 6.150140 ACACTCAAAGATTAAGGCTCACAATC 59.850 38.462 7.86 7.86 0.00 2.67
400 401 6.006449 ACACTCAAAGATTAAGGCTCACAAT 58.994 36.000 0.00 0.00 0.00 2.71
401 402 5.376625 ACACTCAAAGATTAAGGCTCACAA 58.623 37.500 0.00 0.00 0.00 3.33
402 403 4.973168 ACACTCAAAGATTAAGGCTCACA 58.027 39.130 0.00 0.00 0.00 3.58
403 404 5.948992 AACACTCAAAGATTAAGGCTCAC 57.051 39.130 0.00 0.00 0.00 3.51
404 405 6.959639 AAAACACTCAAAGATTAAGGCTCA 57.040 33.333 0.00 0.00 0.00 4.26
443 444 9.574516 AAAGTTCTTGTGTATTACTCCAAGATT 57.425 29.630 20.33 14.17 41.91 2.40
444 445 9.574516 AAAAGTTCTTGTGTATTACTCCAAGAT 57.425 29.630 20.33 10.83 41.91 2.40
445 446 8.974060 AAAAGTTCTTGTGTATTACTCCAAGA 57.026 30.769 17.84 17.84 40.98 3.02
446 447 8.009974 CGAAAAGTTCTTGTGTATTACTCCAAG 58.990 37.037 15.11 15.11 36.49 3.61
447 448 7.711772 TCGAAAAGTTCTTGTGTATTACTCCAA 59.288 33.333 0.00 0.00 0.00 3.53
448 449 7.211573 TCGAAAAGTTCTTGTGTATTACTCCA 58.788 34.615 0.00 0.00 0.00 3.86
449 450 7.148623 CCTCGAAAAGTTCTTGTGTATTACTCC 60.149 40.741 0.00 0.00 0.00 3.85
450 451 7.597743 TCCTCGAAAAGTTCTTGTGTATTACTC 59.402 37.037 0.00 0.00 0.00 2.59
451 452 7.439381 TCCTCGAAAAGTTCTTGTGTATTACT 58.561 34.615 0.00 0.00 0.00 2.24
452 453 7.597743 TCTCCTCGAAAAGTTCTTGTGTATTAC 59.402 37.037 0.00 0.00 0.00 1.89
453 454 7.663827 TCTCCTCGAAAAGTTCTTGTGTATTA 58.336 34.615 0.00 0.00 0.00 0.98
454 455 6.522054 TCTCCTCGAAAAGTTCTTGTGTATT 58.478 36.000 0.00 0.00 0.00 1.89
455 456 6.097915 TCTCCTCGAAAAGTTCTTGTGTAT 57.902 37.500 0.00 0.00 0.00 2.29
456 457 5.524971 TCTCCTCGAAAAGTTCTTGTGTA 57.475 39.130 0.00 0.00 0.00 2.90
457 458 4.402056 TCTCCTCGAAAAGTTCTTGTGT 57.598 40.909 0.00 0.00 0.00 3.72
458 459 5.734855 TTTCTCCTCGAAAAGTTCTTGTG 57.265 39.130 0.00 0.00 38.62 3.33
501 502 2.167662 CCATCTGCCCGGTAACTTTTT 58.832 47.619 0.00 0.00 0.00 1.94
502 503 1.615919 CCCATCTGCCCGGTAACTTTT 60.616 52.381 0.00 0.00 0.00 2.27
503 504 0.034477 CCCATCTGCCCGGTAACTTT 60.034 55.000 0.00 0.00 0.00 2.66
504 505 1.607612 CCCATCTGCCCGGTAACTT 59.392 57.895 0.00 0.00 0.00 2.66
505 506 2.375345 CCCCATCTGCCCGGTAACT 61.375 63.158 0.00 0.00 0.00 2.24
506 507 2.192175 CCCCATCTGCCCGGTAAC 59.808 66.667 0.00 0.00 0.00 2.50
507 508 3.804329 GCCCCATCTGCCCGGTAA 61.804 66.667 0.00 0.00 0.00 2.85
512 513 4.864334 CTCGTGCCCCATCTGCCC 62.864 72.222 0.00 0.00 0.00 5.36
513 514 4.864334 CCTCGTGCCCCATCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
515 516 3.411114 ATGCCTCGTGCCCCATCTG 62.411 63.158 0.00 0.00 40.16 2.90
516 517 3.092511 ATGCCTCGTGCCCCATCT 61.093 61.111 0.00 0.00 40.16 2.90
517 518 2.592861 GATGCCTCGTGCCCCATC 60.593 66.667 0.00 0.00 40.16 3.51
518 519 4.552365 CGATGCCTCGTGCCCCAT 62.552 66.667 2.94 0.00 40.07 4.00
531 532 4.457496 AGCCTGGCACGGACGATG 62.457 66.667 22.65 0.00 36.31 3.84
532 533 4.457496 CAGCCTGGCACGGACGAT 62.457 66.667 22.65 0.00 36.31 3.73
535 536 3.628646 ATTCCAGCCTGGCACGGAC 62.629 63.158 24.57 0.00 37.47 4.79
536 537 3.329889 ATTCCAGCCTGGCACGGA 61.330 61.111 22.65 22.22 37.47 4.69
537 538 3.136123 CATTCCAGCCTGGCACGG 61.136 66.667 22.65 20.22 37.47 4.94
538 539 2.360350 ACATTCCAGCCTGGCACG 60.360 61.111 22.65 11.36 37.47 5.34
539 540 0.682209 ATCACATTCCAGCCTGGCAC 60.682 55.000 22.65 0.00 37.47 5.01
540 541 0.040058 AATCACATTCCAGCCTGGCA 59.960 50.000 22.65 0.00 37.47 4.92
541 542 1.678101 GTAATCACATTCCAGCCTGGC 59.322 52.381 11.65 11.65 37.47 4.85
542 543 3.003394 TGTAATCACATTCCAGCCTGG 57.997 47.619 3.69 3.69 39.43 4.45
543 544 5.614308 TCTATGTAATCACATTCCAGCCTG 58.386 41.667 0.00 0.00 42.98 4.85
544 545 5.894298 TCTATGTAATCACATTCCAGCCT 57.106 39.130 0.00 0.00 42.98 4.58
545 546 6.291377 TCTTCTATGTAATCACATTCCAGCC 58.709 40.000 0.00 0.00 42.98 4.85
546 547 7.792374 TTCTTCTATGTAATCACATTCCAGC 57.208 36.000 0.00 0.00 42.98 4.85
547 548 8.616076 GGTTTCTTCTATGTAATCACATTCCAG 58.384 37.037 0.00 0.00 42.98 3.86
548 549 7.556275 GGGTTTCTTCTATGTAATCACATTCCA 59.444 37.037 0.00 0.00 42.98 3.53
549 550 7.556275 TGGGTTTCTTCTATGTAATCACATTCC 59.444 37.037 0.00 0.00 42.98 3.01
550 551 8.398665 GTGGGTTTCTTCTATGTAATCACATTC 58.601 37.037 0.00 0.00 42.98 2.67
551 552 7.339466 GGTGGGTTTCTTCTATGTAATCACATT 59.661 37.037 0.00 0.00 42.98 2.71
553 554 6.177610 GGTGGGTTTCTTCTATGTAATCACA 58.822 40.000 0.00 0.00 39.52 3.58
554 555 5.589050 GGGTGGGTTTCTTCTATGTAATCAC 59.411 44.000 0.00 0.00 0.00 3.06
555 556 5.251932 TGGGTGGGTTTCTTCTATGTAATCA 59.748 40.000 0.00 0.00 0.00 2.57
556 557 5.751586 TGGGTGGGTTTCTTCTATGTAATC 58.248 41.667 0.00 0.00 0.00 1.75
557 558 5.755849 CTGGGTGGGTTTCTTCTATGTAAT 58.244 41.667 0.00 0.00 0.00 1.89
558 559 5.174037 CTGGGTGGGTTTCTTCTATGTAA 57.826 43.478 0.00 0.00 0.00 2.41
559 560 4.837093 CTGGGTGGGTTTCTTCTATGTA 57.163 45.455 0.00 0.00 0.00 2.29
560 561 3.721087 CTGGGTGGGTTTCTTCTATGT 57.279 47.619 0.00 0.00 0.00 2.29
911 912 1.070289 GAGGTCGAACAAACTCAGGGT 59.930 52.381 1.87 0.00 0.00 4.34
912 913 1.608283 GGAGGTCGAACAAACTCAGGG 60.608 57.143 1.87 0.00 0.00 4.45
915 916 1.540363 GCTGGAGGTCGAACAAACTCA 60.540 52.381 1.87 0.00 0.00 3.41
921 922 1.816863 GACTGGCTGGAGGTCGAACA 61.817 60.000 1.87 0.00 0.00 3.18
935 936 1.607148 GTTTGTTTCTTCCGGGACTGG 59.393 52.381 0.00 0.00 0.00 4.00
936 937 2.290641 CTGTTTGTTTCTTCCGGGACTG 59.709 50.000 0.00 0.00 0.00 3.51
953 954 4.285790 TGCCTCCCCTCCCCTGTT 62.286 66.667 0.00 0.00 0.00 3.16
954 955 4.748798 CTGCCTCCCCTCCCCTGT 62.749 72.222 0.00 0.00 0.00 4.00
955 956 3.950861 TTCTGCCTCCCCTCCCCTG 62.951 68.421 0.00 0.00 0.00 4.45
956 957 3.626596 TTCTGCCTCCCCTCCCCT 61.627 66.667 0.00 0.00 0.00 4.79
957 958 2.923852 ATCTTCTGCCTCCCCTCCCC 62.924 65.000 0.00 0.00 0.00 4.81
958 959 1.385206 ATCTTCTGCCTCCCCTCCC 60.385 63.158 0.00 0.00 0.00 4.30
959 960 1.753368 CGATCTTCTGCCTCCCCTCC 61.753 65.000 0.00 0.00 0.00 4.30
1347 1357 1.153939 CCTCGAGCAGGTGTCGAAG 60.154 63.158 6.99 0.00 45.37 3.79
1449 1459 4.280677 TGTTTGGAATCAGGGTGATGAAAC 59.719 41.667 10.03 10.03 37.15 2.78
1450 1460 4.280677 GTGTTTGGAATCAGGGTGATGAAA 59.719 41.667 0.00 0.00 37.15 2.69
1458 1468 5.450965 GCAATATCTGTGTTTGGAATCAGGG 60.451 44.000 0.00 0.00 0.00 4.45
1478 1488 8.051535 TCTAAATTCATTGAGAGAAGAGGCAAT 58.948 33.333 0.00 0.00 0.00 3.56
1490 1502 9.578439 GAGGGAAATTGTTCTAAATTCATTGAG 57.422 33.333 0.00 0.00 33.92 3.02
1492 1504 8.534496 AGGAGGGAAATTGTTCTAAATTCATTG 58.466 33.333 0.00 0.00 33.92 2.82
1503 1515 6.490381 AGTGAAGTTTAGGAGGGAAATTGTTC 59.510 38.462 0.00 0.00 0.00 3.18
1505 1517 5.953571 AGTGAAGTTTAGGAGGGAAATTGT 58.046 37.500 0.00 0.00 0.00 2.71
1522 1534 7.490402 AGCTTTGTCAAAATTTTGAGAGTGAAG 59.510 33.333 29.34 25.93 46.80 3.02
1524 1536 6.866480 AGCTTTGTCAAAATTTTGAGAGTGA 58.134 32.000 29.34 17.71 46.80 3.41
1549 1561 3.838317 TGGATTGTAACCTGTCAGCTAGT 59.162 43.478 0.00 0.00 0.00 2.57
1556 1568 5.690865 TGGGATTATGGATTGTAACCTGTC 58.309 41.667 0.00 0.00 0.00 3.51
1596 1608 4.034279 TGGCTTTAATAACGCCGTATTGTC 59.966 41.667 14.51 0.00 46.67 3.18
1603 1615 1.658994 TCCTGGCTTTAATAACGCCG 58.341 50.000 14.51 9.72 46.67 6.46
1627 1639 7.987458 TCACCTTCATCCTTCTATTAATCACAC 59.013 37.037 0.00 0.00 0.00 3.82
1652 1664 5.565834 GCCCTGCTAGTGATCAGTAACTATC 60.566 48.000 11.38 0.00 0.00 2.08
1659 1671 1.140452 CATGCCCTGCTAGTGATCAGT 59.860 52.381 8.40 8.40 0.00 3.41
1664 1676 0.692476 ACAACATGCCCTGCTAGTGA 59.308 50.000 0.00 0.00 0.00 3.41
1665 1677 0.806868 CACAACATGCCCTGCTAGTG 59.193 55.000 0.00 0.00 0.00 2.74
1738 1750 2.875933 CGGTAAAAGAAACAGGAGCACA 59.124 45.455 0.00 0.00 0.00 4.57
1758 1770 8.335256 AGCATTACACTTAAAACAAAAGAACG 57.665 30.769 0.00 0.00 0.00 3.95
1777 1789 4.398988 CCAGCAATGGTCTTGTAAGCATTA 59.601 41.667 1.47 0.00 43.50 1.90
1793 1805 5.564550 ACAAAATCTCACTCTACCAGCAAT 58.435 37.500 0.00 0.00 0.00 3.56
1811 1823 8.402472 ACGACAGAAATGATAAAACAGACAAAA 58.598 29.630 0.00 0.00 0.00 2.44
1851 1863 1.134521 TGGGCACTTTCGCTATGGTAG 60.135 52.381 0.00 0.00 0.00 3.18
1854 1866 0.664761 CATGGGCACTTTCGCTATGG 59.335 55.000 0.00 0.00 0.00 2.74
1855 1867 1.382522 ACATGGGCACTTTCGCTATG 58.617 50.000 0.00 0.00 34.67 2.23
1914 1927 4.794278 TTAGCACGATACAACCTGAGAA 57.206 40.909 0.00 0.00 0.00 2.87
1946 1960 1.818642 ATCACAGAAGGCACAGAAGC 58.181 50.000 0.00 0.00 0.00 3.86
1953 1971 7.281841 TGATATAATCACAATCACAGAAGGCA 58.718 34.615 0.00 0.00 33.59 4.75
2106 2127 6.351286 GCATGGAAGGGACAATGTTTCTTTAT 60.351 38.462 0.00 1.47 0.00 1.40
2111 2132 2.562298 TGCATGGAAGGGACAATGTTTC 59.438 45.455 0.00 0.00 0.00 2.78
2261 2286 9.287373 CCTTGTGTAACTATTTTGGTAGGTTAA 57.713 33.333 0.00 0.00 38.04 2.01
2312 2337 1.156736 CGAGTGTTAGTGCCCTTTGG 58.843 55.000 0.00 0.00 0.00 3.28
2403 2428 7.123247 ACTTTTCCTATAAATGAAGTGCTGCAT 59.877 33.333 5.27 0.00 0.00 3.96
2404 2429 6.434028 ACTTTTCCTATAAATGAAGTGCTGCA 59.566 34.615 0.00 0.00 0.00 4.41
2445 2478 7.136772 CAGATGTATAGTTGCAAATCACATGG 58.863 38.462 23.59 15.08 0.00 3.66
2451 2484 9.956720 AAAATAGCAGATGTATAGTTGCAAATC 57.043 29.630 1.02 0.00 38.97 2.17
2489 2522 5.059161 GCCATTAGCAGATACAATGAGACA 58.941 41.667 0.00 0.00 42.97 3.41
2546 2579 5.010922 ACAGGAGAAAGCATAACATTTGCAA 59.989 36.000 0.00 0.00 42.62 4.08
2608 2641 6.893583 TCAGAGATAAAATCTTTCAGGAGGG 58.106 40.000 0.00 0.00 40.38 4.30
2647 2680 6.970043 CGGTTGAACTTTTAGAATCACAAACA 59.030 34.615 0.00 0.00 0.00 2.83
2667 2700 1.600413 GCACCTGCTTTTCTTCGGTTG 60.600 52.381 0.00 0.00 38.21 3.77
2684 2717 7.960738 ACGTTATAAACATGTAACATCAAGCAC 59.039 33.333 0.00 0.00 31.83 4.40
2699 2732 8.742777 ACTAAGTACCATGAGACGTTATAAACA 58.257 33.333 0.00 0.00 0.00 2.83
2724 2761 6.659668 AGGGAGAGCTAATTTTGTCCTAAAAC 59.340 38.462 0.00 0.00 0.00 2.43
2791 2828 3.713858 TCAATAATTTGCAGATGGGCG 57.286 42.857 0.00 0.00 36.28 6.13
2792 2829 6.930667 AAAATCAATAATTTGCAGATGGGC 57.069 33.333 0.00 0.00 37.64 5.36
2799 2836 9.491675 CAGGCCATATAAAATCAATAATTTGCA 57.508 29.630 5.01 0.00 37.64 4.08
2823 2860 1.541588 GGTTAGCCTTTGCCAAGACAG 59.458 52.381 0.00 0.00 38.69 3.51
2836 2873 1.203994 TCTTAGACGCACTGGTTAGCC 59.796 52.381 0.00 0.00 0.00 3.93
2849 2886 7.923414 AACAAGGTAAATGTGGATCTTAGAC 57.077 36.000 0.00 0.00 0.00 2.59
2881 2921 7.830940 TTTCATGTTACATGATTTGATTGCC 57.169 32.000 25.91 0.00 0.00 4.52
2900 2941 4.398988 TCGTTATCTGCCTGCAAATTTCAT 59.601 37.500 0.00 0.00 0.00 2.57
2918 2959 3.670625 CTCCAATCCCACAACTTCGTTA 58.329 45.455 0.00 0.00 0.00 3.18
3169 3225 7.242359 ACAGTCCCATGCTATAACTAGTCTAT 58.758 38.462 0.00 0.00 0.00 1.98
3177 3233 5.527582 CCACTAAACAGTCCCATGCTATAAC 59.472 44.000 0.00 0.00 0.00 1.89
3178 3234 5.397447 CCCACTAAACAGTCCCATGCTATAA 60.397 44.000 0.00 0.00 0.00 0.98
3282 3361 3.073798 TGAATGGGAGTCAACTAAAGCCA 59.926 43.478 0.00 0.00 0.00 4.75
3327 3406 1.147376 CTCCACCAACACGGGTTCA 59.853 57.895 0.00 0.00 39.79 3.18
3333 3412 1.877637 TTCATGTCTCCACCAACACG 58.122 50.000 0.00 0.00 0.00 4.49
3373 3452 7.502895 ACACTTTAGAGACTTGTACAAGAGAGA 59.497 37.037 36.14 17.18 40.79 3.10
3396 3475 9.099454 CTCCCTCTGTAAACAAATATAAGACAC 57.901 37.037 0.00 0.00 0.00 3.67
3496 3597 4.604976 GCAAGTGCTCATGGAATATCAAC 58.395 43.478 0.00 0.00 38.21 3.18
3564 3665 3.428870 GCGACAGATTCTTCGTTTCAGAA 59.571 43.478 14.99 0.00 37.56 3.02
3566 3667 2.731451 TGCGACAGATTCTTCGTTTCAG 59.269 45.455 14.99 0.00 37.56 3.02
3567 3668 2.749776 TGCGACAGATTCTTCGTTTCA 58.250 42.857 14.99 6.57 37.56 2.69
3568 3669 3.367932 TGATGCGACAGATTCTTCGTTTC 59.632 43.478 14.99 12.87 37.56 2.78
3569 3670 3.123621 GTGATGCGACAGATTCTTCGTTT 59.876 43.478 14.99 7.13 37.56 3.60
3570 3671 2.668457 GTGATGCGACAGATTCTTCGTT 59.332 45.455 14.99 7.37 37.56 3.85
3572 3673 1.590238 GGTGATGCGACAGATTCTTCG 59.410 52.381 11.46 11.46 38.31 3.79
3573 3674 2.606725 CTGGTGATGCGACAGATTCTTC 59.393 50.000 0.00 0.00 34.21 2.87
3581 3682 3.189376 TTGCCCTGGTGATGCGACA 62.189 57.895 0.00 0.00 0.00 4.35
3587 3688 2.173519 CATTTCAGTTGCCCTGGTGAT 58.826 47.619 0.00 0.00 41.83 3.06
3651 3772 5.798132 AGCTTCAGTGTTTGAGTGATCATA 58.202 37.500 0.00 0.00 37.07 2.15
3720 3842 4.020485 TGTCTGTCCCCTAGAAAGTTTAGC 60.020 45.833 0.00 0.00 30.94 3.09
3784 3906 2.607750 GAGCCCAGTCCAGGTGGA 60.608 66.667 0.00 0.00 43.08 4.02
3787 3909 2.976490 GCATGAGCCCAGTCCAGGT 61.976 63.158 0.00 0.00 33.58 4.00
3832 3954 7.583625 TCTTCCCTAATAATTTCCTTCCTTCC 58.416 38.462 0.00 0.00 0.00 3.46
3840 3962 7.418408 CGCTTCTTTCTTCCCTAATAATTTCC 58.582 38.462 0.00 0.00 0.00 3.13
3842 3964 6.890268 ACCGCTTCTTTCTTCCCTAATAATTT 59.110 34.615 0.00 0.00 0.00 1.82
3843 3965 6.424032 ACCGCTTCTTTCTTCCCTAATAATT 58.576 36.000 0.00 0.00 0.00 1.40
3844 3966 6.002653 ACCGCTTCTTTCTTCCCTAATAAT 57.997 37.500 0.00 0.00 0.00 1.28
3845 3967 5.046159 TGACCGCTTCTTTCTTCCCTAATAA 60.046 40.000 0.00 0.00 0.00 1.40
3846 3968 4.468510 TGACCGCTTCTTTCTTCCCTAATA 59.531 41.667 0.00 0.00 0.00 0.98
3847 3969 3.263425 TGACCGCTTCTTTCTTCCCTAAT 59.737 43.478 0.00 0.00 0.00 1.73
3848 3970 2.635915 TGACCGCTTCTTTCTTCCCTAA 59.364 45.455 0.00 0.00 0.00 2.69
3849 3971 2.233922 CTGACCGCTTCTTTCTTCCCTA 59.766 50.000 0.00 0.00 0.00 3.53
3850 3972 1.002544 CTGACCGCTTCTTTCTTCCCT 59.997 52.381 0.00 0.00 0.00 4.20
3851 3973 1.002087 TCTGACCGCTTCTTTCTTCCC 59.998 52.381 0.00 0.00 0.00 3.97
3852 3974 2.457366 TCTGACCGCTTCTTTCTTCC 57.543 50.000 0.00 0.00 0.00 3.46
3853 3975 3.589988 TCATCTGACCGCTTCTTTCTTC 58.410 45.455 0.00 0.00 0.00 2.87
3889 4011 0.451383 CATGCCGCCGATTTCTCAAA 59.549 50.000 0.00 0.00 0.00 2.69
3890 4012 0.392327 TCATGCCGCCGATTTCTCAA 60.392 50.000 0.00 0.00 0.00 3.02
3891 4013 0.811219 CTCATGCCGCCGATTTCTCA 60.811 55.000 0.00 0.00 0.00 3.27
3892 4014 0.530650 TCTCATGCCGCCGATTTCTC 60.531 55.000 0.00 0.00 0.00 2.87
3893 4015 0.107456 ATCTCATGCCGCCGATTTCT 59.893 50.000 0.00 0.00 0.00 2.52
3894 4016 0.236711 CATCTCATGCCGCCGATTTC 59.763 55.000 0.00 0.00 0.00 2.17
3895 4017 0.179048 TCATCTCATGCCGCCGATTT 60.179 50.000 0.00 0.00 0.00 2.17
3897 4019 1.005275 CTCATCTCATGCCGCCGAT 60.005 57.895 0.00 0.00 0.00 4.18
3898 4020 1.466851 ATCTCATCTCATGCCGCCGA 61.467 55.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.