Multiple sequence alignment - TraesCS7B01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G207500 chr7B 100.000 4959 0 0 1 4959 380064418 380069376 0.000000e+00 9158.0
1 TraesCS7B01G207500 chr7B 100.000 2063 0 0 5276 7338 380069693 380071755 0.000000e+00 3810.0
2 TraesCS7B01G207500 chr7B 98.969 194 1 1 4451 4644 246011562 246011370 5.450000e-91 346.0
3 TraesCS7B01G207500 chr7B 97.537 203 3 2 4455 4656 446162487 446162688 5.450000e-91 346.0
4 TraesCS7B01G207500 chr7B 84.409 186 19 7 1276 1460 684164409 684164585 2.720000e-39 174.0
5 TraesCS7B01G207500 chr7B 92.035 113 9 0 5412 5524 362056579 362056691 7.620000e-35 159.0
6 TraesCS7B01G207500 chr7B 96.000 50 0 1 2843 2892 380067107 380067154 6.100000e-11 80.5
7 TraesCS7B01G207500 chr7B 96.000 50 0 1 2690 2737 380067260 380067309 6.100000e-11 80.5
8 TraesCS7B01G207500 chr7D 94.697 2131 63 17 2353 4459 385707969 385710073 0.000000e+00 3264.0
9 TraesCS7B01G207500 chr7D 93.547 1937 75 18 5404 7335 385711727 385713618 0.000000e+00 2839.0
10 TraesCS7B01G207500 chr7D 96.391 942 32 2 1416 2356 385706646 385707586 0.000000e+00 1550.0
11 TraesCS7B01G207500 chr7D 86.896 786 81 8 4 787 385702881 385703646 0.000000e+00 861.0
12 TraesCS7B01G207500 chr7D 95.327 321 9 3 4643 4959 385710058 385710376 8.500000e-139 505.0
13 TraesCS7B01G207500 chr7D 95.890 292 11 1 1133 1424 385706175 385706465 8.620000e-129 472.0
14 TraesCS7B01G207500 chr7D 96.694 121 4 0 5287 5407 385710438 385710558 1.250000e-47 202.0
15 TraesCS7B01G207500 chr7D 90.000 150 14 1 823 971 385705705 385705854 7.510000e-45 193.0
16 TraesCS7B01G207500 chr7D 94.382 89 5 0 5436 5524 289262633 289262721 3.570000e-28 137.0
17 TraesCS7B01G207500 chr7D 89.796 98 7 2 2745 2839 385708556 385708653 1.000000e-23 122.0
18 TraesCS7B01G207500 chr7D 96.000 50 0 1 2843 2892 385708316 385708363 6.100000e-11 80.5
19 TraesCS7B01G207500 chr7D 90.909 55 3 2 2499 2553 62988087 62988035 1.020000e-08 73.1
20 TraesCS7B01G207500 chr7D 92.308 52 3 1 796 847 87709952 87709902 1.020000e-08 73.1
21 TraesCS7B01G207500 chr7D 100.000 33 0 0 784 816 385705681 385705713 2.210000e-05 62.1
22 TraesCS7B01G207500 chr7A 91.595 2082 105 21 2393 4459 433733519 433735545 0.000000e+00 2811.0
23 TraesCS7B01G207500 chr7A 93.584 1465 62 8 5883 7335 433736506 433737950 0.000000e+00 2156.0
24 TraesCS7B01G207500 chr7A 94.208 846 42 4 1556 2398 433731159 433732000 0.000000e+00 1284.0
25 TraesCS7B01G207500 chr7A 93.548 837 41 7 600 1424 433729833 433730668 0.000000e+00 1234.0
26 TraesCS7B01G207500 chr7A 83.641 379 34 18 5378 5756 433735768 433736118 1.530000e-86 331.0
27 TraesCS7B01G207500 chr7A 90.456 241 10 7 4643 4873 433735530 433735767 9.250000e-79 305.0
28 TraesCS7B01G207500 chr7A 93.617 141 5 1 5744 5884 433736289 433736425 2.680000e-49 207.0
29 TraesCS7B01G207500 chr7A 92.029 138 8 1 1416 1553 433730848 433730982 2.700000e-44 191.0
30 TraesCS7B01G207500 chr7A 81.875 160 18 7 2690 2839 433733973 433734131 2.780000e-24 124.0
31 TraesCS7B01G207500 chr7A 87.209 86 7 3 21 105 512185053 512184971 2.180000e-15 95.3
32 TraesCS7B01G207500 chr7A 96.000 50 0 1 2843 2892 433733820 433733867 6.100000e-11 80.5
33 TraesCS7B01G207500 chr7A 90.909 55 4 1 2499 2553 609260990 609261043 1.020000e-08 73.1
34 TraesCS7B01G207500 chr6B 99.482 193 0 1 4453 4645 583448113 583447922 4.210000e-92 350.0
35 TraesCS7B01G207500 chr6B 100.000 188 0 0 4457 4644 28503832 28503645 1.520000e-91 348.0
36 TraesCS7B01G207500 chr6B 91.150 113 10 0 1344 1456 68220535 68220647 3.550000e-33 154.0
37 TraesCS7B01G207500 chr6B 88.889 108 12 0 2149 2256 94300204 94300097 4.620000e-27 134.0
38 TraesCS7B01G207500 chr3A 100.000 189 0 0 4455 4643 353638874 353638686 4.210000e-92 350.0
39 TraesCS7B01G207500 chr3A 100.000 189 0 0 4459 4647 403210301 403210113 4.210000e-92 350.0
40 TraesCS7B01G207500 chr3A 95.604 91 4 0 5434 5524 566124969 566124879 5.930000e-31 147.0
41 TraesCS7B01G207500 chr2A 99.482 193 0 1 4456 4647 734626104 734626296 4.210000e-92 350.0
42 TraesCS7B01G207500 chr2A 87.912 182 13 4 1276 1456 484993597 484993424 9.650000e-49 206.0
43 TraesCS7B01G207500 chr2A 86.264 182 16 5 1276 1456 715826067 715825894 9.720000e-44 189.0
44 TraesCS7B01G207500 chr2A 94.318 88 5 0 5436 5523 12007860 12007947 1.280000e-27 135.0
45 TraesCS7B01G207500 chr3B 98.969 194 2 0 4451 4644 289595093 289594900 1.520000e-91 348.0
46 TraesCS7B01G207500 chr3B 88.889 81 8 1 21 101 257513554 257513633 1.680000e-16 99.0
47 TraesCS7B01G207500 chr5B 97.015 201 6 0 4444 4644 267758024 267758224 9.120000e-89 339.0
48 TraesCS7B01G207500 chr5B 83.140 172 19 6 1286 1456 569809670 569809832 1.650000e-31 148.0
49 TraesCS7B01G207500 chr5A 86.705 173 14 6 1285 1456 632224765 632224601 4.520000e-42 183.0
50 TraesCS7B01G207500 chr5A 91.892 74 5 1 28 101 579429503 579429431 1.300000e-17 102.0
51 TraesCS7B01G207500 chr1B 85.876 177 15 5 1276 1451 44353466 44353633 5.850000e-41 180.0
52 TraesCS7B01G207500 chr1A 84.066 182 18 6 1276 1456 525837771 525837942 1.640000e-36 165.0
53 TraesCS7B01G207500 chr1A 90.323 62 5 1 2492 2553 319883298 319883358 6.100000e-11 80.5
54 TraesCS7B01G207500 chr4A 95.876 97 3 1 5434 5530 531099732 531099827 9.860000e-34 156.0
55 TraesCS7B01G207500 chr4B 96.552 87 3 0 5440 5526 517162465 517162551 2.130000e-30 145.0
56 TraesCS7B01G207500 chr4B 97.826 46 1 0 2499 2544 511365693 511365648 6.100000e-11 80.5
57 TraesCS7B01G207500 chr4B 97.727 44 1 0 2499 2542 95444625 95444582 7.890000e-10 76.8
58 TraesCS7B01G207500 chr3D 93.407 91 6 0 5434 5524 422752355 422752445 1.280000e-27 135.0
59 TraesCS7B01G207500 chr3D 92.683 82 6 0 21 102 402336798 402336879 1.290000e-22 119.0
60 TraesCS7B01G207500 chr1D 90.123 81 7 1 22 102 492638946 492639025 3.620000e-18 104.0
61 TraesCS7B01G207500 chr5D 89.873 79 8 0 23 101 341692541 341692463 1.300000e-17 102.0
62 TraesCS7B01G207500 chr2B 89.157 83 5 3 21 102 199505847 199505768 4.680000e-17 100.0
63 TraesCS7B01G207500 chr4D 88.750 80 7 2 23 102 176909775 176909698 6.060000e-16 97.1
64 TraesCS7B01G207500 chr4D 97.826 46 1 0 2499 2544 502715746 502715791 6.100000e-11 80.5
65 TraesCS7B01G207500 chr4D 92.593 54 4 0 2500 2553 502047623 502047676 2.190000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G207500 chr7B 380064418 380071755 7337 False 3282.250000 9158 98.000000 1 7338 4 chr7B.!!$F4 7337
1 TraesCS7B01G207500 chr7D 385702881 385713618 10737 False 922.781818 3264 94.112545 4 7335 11 chr7D.!!$F2 7331
2 TraesCS7B01G207500 chr7A 433729833 433737950 8117 False 872.350000 2811 91.055300 600 7335 10 chr7A.!!$F2 6735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.036388 CAACGACTGTGGGGCACTAT 60.036 55.0 0.00 0.00 35.11 2.12 F
549 552 0.038166 ACAATGACAATGAGCCCGGT 59.962 50.0 0.00 0.00 0.00 5.28 F
622 625 0.531090 AACGTGTTCTGCGCCAACTA 60.531 50.0 17.41 4.73 0.00 2.24 F
1981 4574 0.312416 CGAGCTCCATTCCTCTACCG 59.688 60.0 8.47 0.00 0.00 4.02 F
2925 7446 0.600057 CTTTCCAGCCCTGCACTTTC 59.400 55.0 0.00 0.00 0.00 2.62 F
4472 9015 0.035630 CTGTCTGAAGGGGAGCCTTG 60.036 60.0 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1035 3102 0.179100 AGTCGGCGATGGAGAACATG 60.179 55.000 14.79 0.00 40.72 3.21 R
1936 4529 0.184451 AGCATATCCAGGTGGCAAGG 59.816 55.000 0.00 0.00 34.44 3.61 R
2573 7091 0.038166 GGCTCATTGGGTCAGTTGGA 59.962 55.000 0.00 0.00 0.00 3.53 R
3055 7576 1.148273 AAGAGGAACGCAGGTTGCA 59.852 52.632 1.69 0.00 45.87 4.08 R
4490 9033 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
6385 12385 1.257750 TGTAGACTGCGATGGCTGGT 61.258 55.000 11.11 5.23 41.89 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.993853 GCCTCTAGCTGTTGGGCT 59.006 61.111 12.43 0.00 45.29 5.19
35 36 6.125719 TGTTGGGCTGCATAGAATATAAACA 58.874 36.000 0.50 0.00 0.00 2.83
105 106 3.541632 AGGGTATATTTCCAACACGCAG 58.458 45.455 0.00 0.00 0.00 5.18
109 110 1.832883 TATTTCCAACACGCAGCCAT 58.167 45.000 0.00 0.00 0.00 4.40
112 113 0.608856 TTCCAACACGCAGCCATCAT 60.609 50.000 0.00 0.00 0.00 2.45
120 121 2.894565 GCAGCCATCATGAGCGCTC 61.895 63.158 30.42 30.42 0.00 5.03
121 122 1.523032 CAGCCATCATGAGCGCTCA 60.523 57.895 39.63 39.63 44.59 4.26
125 126 0.534427 CCATCATGAGCGCTCACCAT 60.534 55.000 40.34 29.93 43.11 3.55
163 164 2.633657 GTGCAGCAACGACTGTGG 59.366 61.111 0.00 0.00 39.96 4.17
166 167 3.357079 CAGCAACGACTGTGGGGC 61.357 66.667 0.00 0.00 32.78 5.80
167 168 3.872603 AGCAACGACTGTGGGGCA 61.873 61.111 10.28 0.00 0.00 5.36
168 169 3.660111 GCAACGACTGTGGGGCAC 61.660 66.667 0.00 0.00 34.56 5.01
169 170 2.111043 CAACGACTGTGGGGCACT 59.889 61.111 0.00 0.00 35.11 4.40
170 171 1.369692 CAACGACTGTGGGGCACTA 59.630 57.895 0.00 0.00 35.11 2.74
171 172 0.036388 CAACGACTGTGGGGCACTAT 60.036 55.000 0.00 0.00 35.11 2.12
172 173 0.036388 AACGACTGTGGGGCACTATG 60.036 55.000 0.00 0.00 35.11 2.23
173 174 1.153369 CGACTGTGGGGCACTATGG 60.153 63.158 0.00 0.00 35.11 2.74
174 175 1.452108 GACTGTGGGGCACTATGGC 60.452 63.158 0.00 0.00 42.88 4.40
187 188 1.340017 ACTATGGCTTGGCACATTCGT 60.340 47.619 0.00 0.00 39.30 3.85
190 191 1.236616 TGGCTTGGCACATTCGTCAG 61.237 55.000 0.00 0.00 39.30 3.51
216 217 2.029073 AGGAGGTGCACACGAACG 59.971 61.111 20.43 0.00 0.00 3.95
217 218 2.028484 GGAGGTGCACACGAACGA 59.972 61.111 20.43 0.00 0.00 3.85
218 219 2.308039 GGAGGTGCACACGAACGAC 61.308 63.158 20.43 0.00 0.00 4.34
221 222 4.679690 GTGCACACGAACGACGCG 62.680 66.667 13.17 3.53 46.94 6.01
222 223 4.908877 TGCACACGAACGACGCGA 62.909 61.111 15.93 0.00 46.94 5.87
223 224 4.390584 GCACACGAACGACGCGAC 62.391 66.667 15.93 5.54 46.94 5.19
224 225 3.020105 CACACGAACGACGCGACA 61.020 61.111 15.93 0.00 46.94 4.35
225 226 2.278077 ACACGAACGACGCGACAA 60.278 55.556 15.93 0.00 46.94 3.18
226 227 2.164673 CACGAACGACGCGACAAC 59.835 61.111 15.93 0.00 46.94 3.32
227 228 2.278077 ACGAACGACGCGACAACA 60.278 55.556 15.93 0.00 46.94 3.33
228 229 2.290789 ACGAACGACGCGACAACAG 61.291 57.895 15.93 2.08 46.94 3.16
229 230 2.290789 CGAACGACGCGACAACAGT 61.291 57.895 15.93 0.00 34.51 3.55
230 231 1.481683 GAACGACGCGACAACAGTC 59.518 57.895 15.93 0.00 0.00 3.51
231 232 0.933509 GAACGACGCGACAACAGTCT 60.934 55.000 15.93 0.00 33.10 3.24
273 274 1.087501 GCTTAACTTTCCCCTCAGCG 58.912 55.000 0.00 0.00 0.00 5.18
274 275 1.338769 GCTTAACTTTCCCCTCAGCGA 60.339 52.381 0.00 0.00 0.00 4.93
290 291 1.944676 CGATCGCGCCCAAGACTAC 60.945 63.158 0.26 0.00 0.00 2.73
291 292 1.141019 GATCGCGCCCAAGACTACA 59.859 57.895 0.00 0.00 0.00 2.74
312 313 4.018960 ACATTGAGCCTCCAGTTAGAATGT 60.019 41.667 0.00 0.00 0.00 2.71
317 318 4.100373 AGCCTCCAGTTAGAATGTTCTCT 58.900 43.478 0.00 0.00 38.70 3.10
346 349 1.982073 GAAAGAGAACCGCATGGCCG 61.982 60.000 0.00 0.00 39.70 6.13
358 361 1.141881 ATGGCCGTGAACTAGCTCG 59.858 57.895 0.00 0.00 0.00 5.03
362 365 1.226717 CCGTGAACTAGCTCGAGGC 60.227 63.158 15.58 6.66 42.19 4.70
364 367 1.890894 GTGAACTAGCTCGAGGCCA 59.109 57.895 15.58 0.00 43.05 5.36
375 378 2.590007 GAGGCCAAGCGCATCGAT 60.590 61.111 11.47 0.00 38.73 3.59
379 382 0.880278 GGCCAAGCGCATCGATAAGA 60.880 55.000 11.47 0.00 40.31 2.10
414 417 5.241064 GGAGCTCATCACAAAGAATATGCAT 59.759 40.000 17.19 3.79 0.00 3.96
417 420 6.546403 AGCTCATCACAAAGAATATGCATCTT 59.454 34.615 0.19 0.00 38.75 2.40
421 424 6.110543 TCACAAAGAATATGCATCTTGTCG 57.889 37.500 0.19 0.00 37.22 4.35
423 426 4.637534 ACAAAGAATATGCATCTTGTCGCT 59.362 37.500 0.19 0.00 37.22 4.93
440 443 2.357034 TGAGAACCAAGCGCGGTC 60.357 61.111 12.91 0.00 38.76 4.79
446 449 2.357517 CCAAGCGCGGTCTGAGTT 60.358 61.111 12.91 0.00 0.00 3.01
450 453 1.222115 AAGCGCGGTCTGAGTTCAAC 61.222 55.000 12.91 0.00 0.00 3.18
451 454 1.954146 GCGCGGTCTGAGTTCAACA 60.954 57.895 8.83 0.00 0.00 3.33
454 457 1.865865 GCGGTCTGAGTTCAACAAGA 58.134 50.000 0.00 0.00 0.00 3.02
460 463 4.084328 GGTCTGAGTTCAACAAGAATGACG 60.084 45.833 0.00 0.00 38.76 4.35
465 468 5.527214 TGAGTTCAACAAGAATGACGTGATT 59.473 36.000 0.00 0.00 38.76 2.57
485 488 2.734755 TGGGACAAGATATTGGCTGG 57.265 50.000 5.78 0.00 31.92 4.85
509 512 0.464013 TCCGACGAGGATGAGGAGAC 60.464 60.000 0.00 0.00 45.98 3.36
511 514 1.090625 CGACGAGGATGAGGAGACGT 61.091 60.000 0.00 0.00 36.71 4.34
512 515 1.096416 GACGAGGATGAGGAGACGTT 58.904 55.000 0.00 0.00 34.26 3.99
515 518 1.202582 CGAGGATGAGGAGACGTTGTT 59.797 52.381 0.00 0.00 0.00 2.83
517 520 1.971357 AGGATGAGGAGACGTTGTTGT 59.029 47.619 0.00 0.00 0.00 3.32
539 542 1.164411 CGGCCTAGCAACAATGACAA 58.836 50.000 0.00 0.00 0.00 3.18
540 543 1.745087 CGGCCTAGCAACAATGACAAT 59.255 47.619 0.00 0.00 0.00 2.71
541 544 2.478370 CGGCCTAGCAACAATGACAATG 60.478 50.000 0.00 0.00 0.00 2.82
542 545 2.754552 GGCCTAGCAACAATGACAATGA 59.245 45.455 0.00 0.00 0.00 2.57
543 546 3.181493 GGCCTAGCAACAATGACAATGAG 60.181 47.826 0.00 0.00 0.00 2.90
544 547 3.733077 GCCTAGCAACAATGACAATGAGC 60.733 47.826 0.00 1.39 0.00 4.26
549 552 0.038166 ACAATGACAATGAGCCCGGT 59.962 50.000 0.00 0.00 0.00 5.28
570 573 2.203862 TCCGATGGTGGTGGTGGA 60.204 61.111 0.00 0.00 0.00 4.02
583 586 2.982488 GGTGGTGGATGATCCCTATCTT 59.018 50.000 9.36 0.00 35.03 2.40
588 591 4.222588 GGTGGATGATCCCTATCTTCTCAG 59.777 50.000 9.36 0.00 36.80 3.35
603 606 1.157585 CTCAGACTCGGACGACTTCA 58.842 55.000 0.00 0.00 0.00 3.02
622 625 0.531090 AACGTGTTCTGCGCCAACTA 60.531 50.000 17.41 4.73 0.00 2.24
710 713 8.518430 TTATGTTATGTATGATGTGCAACCTT 57.482 30.769 0.00 0.00 34.36 3.50
825 2888 8.856103 TCCTTAAATTTGAGGAGTTAAGGTTTG 58.144 33.333 23.93 0.00 46.75 2.93
826 2889 8.856103 CCTTAAATTTGAGGAGTTAAGGTTTGA 58.144 33.333 21.52 0.00 43.88 2.69
827 2890 9.899226 CTTAAATTTGAGGAGTTAAGGTTTGAG 57.101 33.333 0.00 0.00 32.38 3.02
828 2891 6.901081 AATTTGAGGAGTTAAGGTTTGAGG 57.099 37.500 0.00 0.00 0.00 3.86
829 2892 5.640158 TTTGAGGAGTTAAGGTTTGAGGA 57.360 39.130 0.00 0.00 0.00 3.71
830 2893 4.891992 TGAGGAGTTAAGGTTTGAGGAG 57.108 45.455 0.00 0.00 0.00 3.69
831 2894 3.583086 TGAGGAGTTAAGGTTTGAGGAGG 59.417 47.826 0.00 0.00 0.00 4.30
839 2902 1.202940 AGGTTTGAGGAGGCTTTGGAC 60.203 52.381 0.00 0.00 0.00 4.02
855 2918 5.676331 GCTTTGGACGGGCTAATTTTTAGAG 60.676 44.000 0.00 0.00 0.00 2.43
870 2933 4.696479 TTTAGAGATTGAGATGCCCTCC 57.304 45.455 1.41 0.00 41.25 4.30
879 2942 2.285368 ATGCCCTCCCCGTCTCAA 60.285 61.111 0.00 0.00 0.00 3.02
922 2989 2.295070 CCTTTTAAACCCCAGGTTGACG 59.705 50.000 0.00 0.00 46.20 4.35
1212 3438 1.045407 TTCGCTCCTGTAACCACACT 58.955 50.000 0.00 0.00 0.00 3.55
1321 3547 3.002038 TGCCATGATGTGATGTTGCTA 57.998 42.857 0.00 0.00 0.00 3.49
1335 3561 4.826274 TGTTGCTAATTAGGTCTCTGCT 57.174 40.909 14.28 0.00 0.00 4.24
1374 3600 2.459245 TGCTAGATGTGCAGCAACG 58.541 52.632 0.00 0.00 44.49 4.10
1377 3603 1.667724 GCTAGATGTGCAGCAACGAAT 59.332 47.619 0.00 0.00 37.73 3.34
1411 3637 5.535783 TGATGCTGATTCCTTTCTTGTTCAA 59.464 36.000 0.00 0.00 0.00 2.69
1459 3874 1.084289 GGCACTTTAACTGTAGGCGG 58.916 55.000 0.00 0.00 0.00 6.13
1527 3942 6.320518 TCTGGTTCTATTAGTTCCCCGATAT 58.679 40.000 0.00 0.00 0.00 1.63
1553 3968 1.488705 TTCTGCGGGGAATGTCTGGT 61.489 55.000 0.00 0.00 0.00 4.00
1563 4152 6.560711 CGGGGAATGTCTGGTTTTATTTAAG 58.439 40.000 0.00 0.00 0.00 1.85
1571 4160 7.081349 TGTCTGGTTTTATTTAAGCATCAACG 58.919 34.615 0.00 0.00 35.24 4.10
1585 4174 4.875536 AGCATCAACGCTACAATCATTACA 59.124 37.500 0.00 0.00 41.55 2.41
1772 4363 6.582929 AAAATCCTTCTCTACAGCCCTAAT 57.417 37.500 0.00 0.00 0.00 1.73
1936 4529 1.871126 GCTTGGGTTCTTGCCTGCTC 61.871 60.000 0.00 0.00 0.00 4.26
1946 4539 4.357279 GCCTGCTCCTTGCCACCT 62.357 66.667 0.00 0.00 42.00 4.00
1950 4543 2.207501 CTGCTCCTTGCCACCTGGAT 62.208 60.000 0.00 0.00 42.00 3.41
1981 4574 0.312416 CGAGCTCCATTCCTCTACCG 59.688 60.000 8.47 0.00 0.00 4.02
2043 4636 4.287067 ACACAAGGACTCACCATGTCTTAT 59.713 41.667 0.00 0.00 45.86 1.73
2121 4714 3.827302 ACTTCTTTCGAGCTACCAAGAGA 59.173 43.478 0.00 0.00 0.00 3.10
2223 4816 1.459450 GCAAGAAGGGTGGCGATAAA 58.541 50.000 0.00 0.00 0.00 1.40
2251 4844 2.617788 GCACAGGTGGTTCCATGATACA 60.618 50.000 0.00 0.00 39.02 2.29
2391 6894 2.641559 GTTGCTGTGGCTCTGTGC 59.358 61.111 0.00 0.00 39.59 4.57
2405 6908 0.816018 CTGTGCCGGGTGTGTTTGTA 60.816 55.000 2.18 0.00 0.00 2.41
2417 6922 2.037251 TGTGTTTGTAGGTCTGCCTCTC 59.963 50.000 0.00 0.00 45.64 3.20
2459 6964 1.906574 GGAGTAGTTCACATGGGTGGA 59.093 52.381 0.00 0.00 45.32 4.02
2470 6975 2.158475 ACATGGGTGGACAAGTTGTGAT 60.158 45.455 14.57 0.00 0.00 3.06
2483 6988 0.820074 TTGTGATGGTTTTCGCCGGT 60.820 50.000 1.90 0.00 0.00 5.28
2499 7004 4.701171 TCGCCGGTTTTCCATAAATTAACT 59.299 37.500 1.90 0.00 40.70 2.24
2500 7005 5.183522 TCGCCGGTTTTCCATAAATTAACTT 59.816 36.000 1.90 0.00 40.70 2.66
2501 7006 5.513849 CGCCGGTTTTCCATAAATTAACTTC 59.486 40.000 1.90 0.00 40.70 3.01
2502 7007 6.624204 CGCCGGTTTTCCATAAATTAACTTCT 60.624 38.462 1.90 0.00 40.70 2.85
2503 7008 7.414319 CGCCGGTTTTCCATAAATTAACTTCTA 60.414 37.037 1.90 0.00 40.70 2.10
2544 7061 1.934589 AACTTTTGCCTCCGTTTTGC 58.065 45.000 0.00 0.00 0.00 3.68
2546 7063 1.202405 ACTTTTGCCTCCGTTTTGCAG 60.202 47.619 0.00 0.00 36.21 4.41
2573 7091 2.301870 TCTGGGAGAAACACATACGCTT 59.698 45.455 0.00 0.00 0.00 4.68
2626 7144 2.883888 GCTGAGCCCCACCAGAAATTTA 60.884 50.000 0.00 0.00 32.37 1.40
2630 7148 0.815095 CCCCACCAGAAATTTACCGC 59.185 55.000 0.00 0.00 0.00 5.68
2658 7176 1.565759 TGGAGCATCAAACATAGGCCT 59.434 47.619 11.78 11.78 36.25 5.19
2665 7183 7.177392 GGAGCATCAAACATAGGCCTTTATTAT 59.823 37.037 12.58 0.00 36.25 1.28
2833 7354 5.127194 ACAAGTATCTCTCGTTCATGGCTTA 59.873 40.000 0.00 0.00 0.00 3.09
2925 7446 0.600057 CTTTCCAGCCCTGCACTTTC 59.400 55.000 0.00 0.00 0.00 2.62
3055 7576 2.884639 CCACGTCCAAAACTCATTCCTT 59.115 45.455 0.00 0.00 0.00 3.36
3078 7600 2.097038 CCTGCGTTCCTCTTGCTCG 61.097 63.158 0.00 0.00 0.00 5.03
3081 7603 0.315886 TGCGTTCCTCTTGCTCGTTA 59.684 50.000 0.00 0.00 0.00 3.18
3111 7633 2.036346 AGCAGAAAATCCTTTGGCACAC 59.964 45.455 0.00 0.00 39.29 3.82
3167 7692 0.827368 GGAGTCCTCTAGGTGGCTTG 59.173 60.000 0.41 0.00 36.34 4.01
3470 7996 7.038729 ACAAGGATATGGAGTGTATCACTATGG 60.039 40.741 2.29 0.00 45.44 2.74
3544 8070 7.170658 GTGAATGTATCTGGATTTGTCTAGAGC 59.829 40.741 0.00 0.00 30.88 4.09
3696 8222 8.978874 AATTTATGACTATGCTATCACCACAA 57.021 30.769 0.00 0.00 0.00 3.33
3711 8237 4.996758 TCACCACAACACTATGATGTCAAG 59.003 41.667 0.00 0.00 30.66 3.02
3712 8238 4.756642 CACCACAACACTATGATGTCAAGT 59.243 41.667 0.00 0.00 30.66 3.16
3750 8279 4.503910 TGAATCACAAAGCTATGCTACGT 58.496 39.130 0.00 0.00 38.25 3.57
3803 8332 8.833231 TCTTTAGACTTTTGACCATCTTAGTG 57.167 34.615 0.00 0.00 0.00 2.74
3861 8398 4.691860 AACATCCTTCAAAGCTCATTCG 57.308 40.909 0.00 0.00 0.00 3.34
3876 8413 3.849911 TCATTCGAAGCCTGTAGAGTTG 58.150 45.455 3.35 0.00 0.00 3.16
3963 8500 6.604795 ACTCTTCAATTCATCATTACCCTTGG 59.395 38.462 0.00 0.00 0.00 3.61
4281 8818 5.477637 GGGTTTGGCTTTGTAAGGTATGTTA 59.522 40.000 0.00 0.00 0.00 2.41
4332 8869 4.281657 AGGAATGGATGGAAAAGTAAGGC 58.718 43.478 0.00 0.00 0.00 4.35
4349 8886 9.833917 AAAGTAAGGCTTCTTACCATACTTATC 57.166 33.333 1.30 0.00 45.93 1.75
4354 8891 8.728596 AGGCTTCTTACCATACTTATCATACT 57.271 34.615 0.00 0.00 0.00 2.12
4355 8892 9.160412 AGGCTTCTTACCATACTTATCATACTT 57.840 33.333 0.00 0.00 0.00 2.24
4356 8893 9.209175 GGCTTCTTACCATACTTATCATACTTG 57.791 37.037 0.00 0.00 0.00 3.16
4364 8901 9.959721 ACCATACTTATCATACTTGTTGTTCTT 57.040 29.630 0.00 0.00 0.00 2.52
4459 9002 2.095718 TCACGTTGATCGACTCTGTCTG 60.096 50.000 11.37 0.00 42.86 3.51
4462 9005 3.167425 CGTTGATCGACTCTGTCTGAAG 58.833 50.000 11.37 0.00 42.86 3.02
4463 9006 3.506810 GTTGATCGACTCTGTCTGAAGG 58.493 50.000 5.79 0.00 0.00 3.46
4464 9007 2.095461 TGATCGACTCTGTCTGAAGGG 58.905 52.381 0.00 0.00 0.00 3.95
4465 9008 1.407258 GATCGACTCTGTCTGAAGGGG 59.593 57.143 0.00 0.00 0.00 4.79
4466 9009 0.404426 TCGACTCTGTCTGAAGGGGA 59.596 55.000 0.00 0.00 0.00 4.81
4467 9010 0.814457 CGACTCTGTCTGAAGGGGAG 59.186 60.000 0.00 0.00 0.00 4.30
4468 9011 0.534873 GACTCTGTCTGAAGGGGAGC 59.465 60.000 0.00 0.00 0.00 4.70
4469 9012 0.907230 ACTCTGTCTGAAGGGGAGCC 60.907 60.000 0.00 0.00 0.00 4.70
4470 9013 0.617249 CTCTGTCTGAAGGGGAGCCT 60.617 60.000 0.00 0.00 0.00 4.58
4471 9014 0.178891 TCTGTCTGAAGGGGAGCCTT 60.179 55.000 0.00 0.00 0.00 4.35
4472 9015 0.035630 CTGTCTGAAGGGGAGCCTTG 60.036 60.000 0.00 0.00 0.00 3.61
4473 9016 1.301293 GTCTGAAGGGGAGCCTTGG 59.699 63.158 0.00 0.00 0.00 3.61
4474 9017 2.044551 CTGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
4475 9018 3.984193 CTGAAGGGGAGCCTTGGCG 62.984 68.421 5.95 0.00 0.00 5.69
4483 9026 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4484 9027 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4485 9028 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
4486 9029 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
4487 9030 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
4488 9031 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
4489 9032 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
4494 9037 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4495 9038 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4496 9039 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4497 9040 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4498 9041 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4499 9042 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4500 9043 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4501 9044 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4502 9045 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4503 9046 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4504 9047 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4505 9048 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4506 9049 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4507 9050 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4508 9051 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4523 9066 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
4524 9067 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
4525 9068 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
4526 9069 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
4527 9070 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
4528 9071 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
4529 9072 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
4530 9073 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
4531 9074 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
4532 9075 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
4546 9089 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4547 9090 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
4548 9091 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4549 9092 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4550 9093 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
4551 9094 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
4552 9095 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
4553 9096 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
4554 9097 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
4555 9098 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
4556 9099 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
4557 9100 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
4558 9101 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
4559 9102 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
4560 9103 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
4561 9104 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
4562 9105 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4563 9106 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4564 9107 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4565 9108 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4566 9109 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4567 9110 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4568 9111 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4569 9112 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4570 9113 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4571 9114 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4572 9115 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4573 9116 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4574 9117 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4575 9118 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4576 9119 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4577 9120 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4578 9121 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4579 9122 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4580 9123 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4581 9124 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4582 9125 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4583 9126 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4588 9131 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4589 9132 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4590 9133 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4591 9134 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4592 9135 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4593 9136 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4594 9137 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4595 9138 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4596 9139 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
4597 9140 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
4598 9141 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
4599 9142 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
4600 9143 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
4601 9144 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
4602 9145 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4603 9146 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4604 9147 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4605 9148 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4606 9149 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4607 9150 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4632 9175 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
4633 9176 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
4634 9177 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
4635 9178 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
4636 9179 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
4637 9180 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
4638 9181 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
4639 9182 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
4640 9183 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
4641 9184 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
4663 9206 7.496529 TTTTTGATCGACTCTGTCTCATTTT 57.503 32.000 0.00 0.00 0.00 1.82
4664 9207 6.712241 TTTGATCGACTCTGTCTCATTTTC 57.288 37.500 0.00 0.00 0.00 2.29
4665 9208 5.651387 TGATCGACTCTGTCTCATTTTCT 57.349 39.130 0.00 0.00 0.00 2.52
4666 9209 5.405797 TGATCGACTCTGTCTCATTTTCTG 58.594 41.667 0.00 0.00 0.00 3.02
4821 9373 7.882179 TCATTCAGATGCATGGATTAAGATTG 58.118 34.615 2.46 7.00 33.14 2.67
4886 9440 3.906720 TGGGTGGCTACTCAACTAATC 57.093 47.619 0.00 0.00 33.39 1.75
4934 9488 4.539870 CGATGCACTTTGAAAACTGATGT 58.460 39.130 0.00 0.00 0.00 3.06
5342 9896 4.026744 CTGACTACCTTCAGGGAATCAGA 58.973 47.826 10.61 0.00 40.65 3.27
5370 9924 3.664025 GCAATTCAAAGTTCGTTCTTCCG 59.336 43.478 0.00 0.00 0.00 4.30
5397 9951 9.461312 AAAAGTACAGCCTTATGTTCAATCATA 57.539 29.630 0.00 0.00 34.56 2.15
5453 11179 4.218722 GCCTAAGCGCCTAAAGCA 57.781 55.556 2.29 0.00 44.04 3.91
5474 11200 2.158755 AGGCATATTTCTAAGGCGCTGT 60.159 45.455 7.64 0.00 0.00 4.40
5511 11237 1.257743 TAAGCGTCTGAAGCAGGACT 58.742 50.000 17.46 0.00 37.01 3.85
5588 11314 5.023533 ACGTGCATGATTAGTGGATTACT 57.976 39.130 14.17 0.00 43.56 2.24
5848 11760 5.159925 GGGTGTACGTTTACTCTCTTTCTC 58.840 45.833 0.00 0.00 0.00 2.87
5868 11780 3.997021 CTCAGTGGTTGAACATGGACTAC 59.003 47.826 0.00 0.00 34.81 2.73
5897 11892 8.642432 TCCCACTGACTAGTATTATGAAGAATG 58.358 37.037 0.00 0.00 34.74 2.67
5898 11893 8.642432 CCCACTGACTAGTATTATGAAGAATGA 58.358 37.037 0.00 0.00 34.74 2.57
6027 12022 6.389906 AGGCAATTAGTTGACATGCTTTAAC 58.610 36.000 6.59 0.00 46.26 2.01
6137 12133 0.739112 GGCTCTCTTGGACTCTTGCG 60.739 60.000 0.00 0.00 0.00 4.85
6209 12206 5.682943 AGTTTGACGCAGCTTAATTTGTA 57.317 34.783 0.00 0.00 0.00 2.41
6363 12363 3.850752 AGGGACGATCATTCTATCTGGT 58.149 45.455 0.00 0.00 0.00 4.00
6370 12370 2.279741 TCATTCTATCTGGTTGTGCGC 58.720 47.619 0.00 0.00 0.00 6.09
6586 12589 5.560953 GCTTCGGACCATTGCTAATAATGTC 60.561 44.000 0.00 0.00 36.54 3.06
6587 12590 5.290493 TCGGACCATTGCTAATAATGTCT 57.710 39.130 0.00 0.00 36.54 3.41
6588 12591 5.680619 TCGGACCATTGCTAATAATGTCTT 58.319 37.500 0.00 0.00 36.54 3.01
6630 12633 2.159099 TGTCGTAAGCCTTATCAGCTGG 60.159 50.000 15.13 0.00 40.49 4.85
6632 12635 2.100916 TCGTAAGCCTTATCAGCTGGTC 59.899 50.000 15.13 0.00 40.49 4.02
6668 12671 7.418337 TGCTCTTGTACTACTGGATAATGAA 57.582 36.000 0.00 0.00 0.00 2.57
6671 12674 8.144478 GCTCTTGTACTACTGGATAATGAATCA 58.856 37.037 0.00 0.00 36.20 2.57
6733 12736 6.776887 ACTGAATTCCCCATGATCTAATCT 57.223 37.500 2.27 0.00 0.00 2.40
6738 12741 5.974156 TTCCCCATGATCTAATCTGTTCA 57.026 39.130 0.00 0.00 0.00 3.18
6741 12744 4.202440 CCCCATGATCTAATCTGTTCAGCT 60.202 45.833 0.00 0.00 0.00 4.24
6745 12748 6.147985 CCATGATCTAATCTGTTCAGCTGATG 59.852 42.308 19.04 11.12 36.17 3.07
6747 12750 5.129980 TGATCTAATCTGTTCAGCTGATGGT 59.870 40.000 19.04 4.50 36.17 3.55
6761 12764 1.066929 TGATGGTGACGTGGATCTGTG 60.067 52.381 0.00 0.00 0.00 3.66
6781 12784 3.179265 GCGCACGCGTCTGTGTAT 61.179 61.111 9.86 0.00 41.94 2.29
6782 12785 2.987593 CGCACGCGTCTGTGTATC 59.012 61.111 9.86 0.00 41.94 2.24
6864 12867 5.552870 ACTATCATCTGTACCATGAACCC 57.447 43.478 8.30 0.00 33.94 4.11
6886 12889 2.084546 GTGTTTCCTGGTATGGTCTGC 58.915 52.381 0.00 0.00 0.00 4.26
6906 12909 5.119588 TCTGCACTTTTTACTGTATGTACGC 59.880 40.000 0.00 0.00 0.00 4.42
6925 12928 3.257375 ACGCCTGTCATCTGTTGTTACTA 59.743 43.478 0.00 0.00 0.00 1.82
6980 12983 3.085533 CTCGCCACTGCTATCTACCTAT 58.914 50.000 0.00 0.00 34.43 2.57
6982 12985 2.820197 CGCCACTGCTATCTACCTATGA 59.180 50.000 0.00 0.00 34.43 2.15
6993 12996 9.706529 TGCTATCTACCTATGATTACTGATGAT 57.293 33.333 0.00 0.00 0.00 2.45
7056 13065 1.446907 CATTCCAGTCAGTCAGTGGC 58.553 55.000 0.00 0.00 44.70 5.01
7187 13196 1.302431 CCACCTGCATCGTCAACCA 60.302 57.895 0.00 0.00 0.00 3.67
7287 13298 1.153449 TGGCGGCTGTTAATCTCCG 60.153 57.895 11.43 7.57 44.29 4.63
7312 13323 4.108942 TCCAAAGTTTTAGGGGGAAATCCT 59.891 41.667 0.00 0.00 38.36 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.451028 CAGCCCAACAGCTAGAGGC 60.451 63.158 7.89 7.89 42.61 4.70
5 6 1.139654 CTATGCAGCCCAACAGCTAGA 59.860 52.381 0.00 0.00 42.61 2.43
78 79 6.492254 CGTGTTGGAAATATACCCTAAAAGC 58.508 40.000 0.00 0.00 0.00 3.51
80 81 5.944599 TGCGTGTTGGAAATATACCCTAAAA 59.055 36.000 0.00 0.00 0.00 1.52
82 83 5.100344 TGCGTGTTGGAAATATACCCTAA 57.900 39.130 0.00 0.00 0.00 2.69
105 106 2.541120 GGTGAGCGCTCATGATGGC 61.541 63.158 39.91 26.01 42.18 4.40
109 110 1.227060 CGATGGTGAGCGCTCATGA 60.227 57.895 39.91 29.09 42.18 3.07
125 126 2.084101 CGTGACATTTCGACGGCGA 61.084 57.895 10.67 10.67 46.33 5.54
159 160 1.001020 CAAGCCATAGTGCCCCACA 60.001 57.895 0.00 0.00 36.74 4.17
160 161 1.754234 CCAAGCCATAGTGCCCCAC 60.754 63.158 0.00 0.00 34.10 4.61
163 164 2.044053 TGCCAAGCCATAGTGCCC 60.044 61.111 0.00 0.00 0.00 5.36
166 167 1.064505 CGAATGTGCCAAGCCATAGTG 59.935 52.381 0.00 0.00 0.00 2.74
167 168 1.340017 ACGAATGTGCCAAGCCATAGT 60.340 47.619 0.00 0.00 0.00 2.12
168 169 1.331756 GACGAATGTGCCAAGCCATAG 59.668 52.381 0.00 0.00 0.00 2.23
169 170 1.339535 TGACGAATGTGCCAAGCCATA 60.340 47.619 0.00 0.00 0.00 2.74
170 171 0.608856 TGACGAATGTGCCAAGCCAT 60.609 50.000 0.00 0.00 0.00 4.40
171 172 1.228094 TGACGAATGTGCCAAGCCA 60.228 52.632 0.00 0.00 0.00 4.75
172 173 1.503542 CTGACGAATGTGCCAAGCC 59.496 57.895 0.00 0.00 0.00 4.35
173 174 1.154150 GCTGACGAATGTGCCAAGC 60.154 57.895 0.00 0.00 0.00 4.01
174 175 0.806868 ATGCTGACGAATGTGCCAAG 59.193 50.000 0.00 0.00 0.00 3.61
187 188 1.117994 CACCTCCTGCTCTATGCTGA 58.882 55.000 0.00 0.00 42.27 4.26
190 191 4.453093 GCACCTCCTGCTCTATGC 57.547 61.111 0.00 0.00 43.33 3.14
202 203 2.657296 CGTCGTTCGTGTGCACCT 60.657 61.111 15.69 0.00 34.52 4.00
213 214 3.609258 GACTGTTGTCGCGTCGTT 58.391 55.556 5.77 0.00 33.15 3.85
221 222 2.224314 GCCAAAGTAGCAGACTGTTGTC 59.776 50.000 3.99 0.00 38.87 3.18
222 223 2.222027 GCCAAAGTAGCAGACTGTTGT 58.778 47.619 3.99 0.00 38.87 3.32
223 224 2.221169 TGCCAAAGTAGCAGACTGTTG 58.779 47.619 3.99 0.22 38.87 3.33
224 225 2.638480 TGCCAAAGTAGCAGACTGTT 57.362 45.000 3.99 0.00 38.87 3.16
231 232 0.670546 GCTCGACTGCCAAAGTAGCA 60.671 55.000 0.00 0.00 39.41 3.49
245 246 2.334838 GGAAAGTTAAGCTTCGCTCGA 58.665 47.619 0.00 0.00 38.25 4.04
273 274 0.249489 ATGTAGTCTTGGGCGCGATC 60.249 55.000 12.10 0.06 0.00 3.69
274 275 0.178068 AATGTAGTCTTGGGCGCGAT 59.822 50.000 12.10 0.00 0.00 4.58
283 284 3.177228 ACTGGAGGCTCAATGTAGTCTT 58.823 45.455 17.69 0.00 29.59 3.01
290 291 4.521146 ACATTCTAACTGGAGGCTCAATG 58.479 43.478 17.69 16.51 0.00 2.82
291 292 4.851639 ACATTCTAACTGGAGGCTCAAT 57.148 40.909 17.69 2.45 0.00 2.57
317 318 0.109873 GTTCTCTTTCTCGTCGGCGA 60.110 55.000 13.29 13.29 45.79 5.54
346 349 0.246635 TTGGCCTCGAGCTAGTTCAC 59.753 55.000 6.99 0.00 43.05 3.18
358 361 0.880278 TTATCGATGCGCTTGGCCTC 60.880 55.000 9.73 0.00 42.61 4.70
362 365 0.861837 GGTCTTATCGATGCGCTTGG 59.138 55.000 9.73 3.47 0.00 3.61
364 367 3.944055 ATAGGTCTTATCGATGCGCTT 57.056 42.857 9.73 0.55 0.00 4.68
375 378 3.090037 GAGCTCCGCCATATAGGTCTTA 58.910 50.000 0.87 0.00 40.61 2.10
379 382 1.827969 GATGAGCTCCGCCATATAGGT 59.172 52.381 12.15 0.00 40.61 3.08
405 408 4.053983 TCTCAGCGACAAGATGCATATTC 58.946 43.478 2.96 0.00 35.94 1.75
409 412 2.005451 GTTCTCAGCGACAAGATGCAT 58.995 47.619 0.00 0.00 35.94 3.96
414 417 1.873903 GCTTGGTTCTCAGCGACAAGA 60.874 52.381 6.88 0.00 40.60 3.02
417 420 4.361253 GCTTGGTTCTCAGCGACA 57.639 55.556 0.00 0.00 0.00 4.35
421 424 3.793144 CCGCGCTTGGTTCTCAGC 61.793 66.667 5.56 0.00 0.00 4.26
423 426 2.357034 GACCGCGCTTGGTTCTCA 60.357 61.111 8.45 0.00 44.01 3.27
435 438 1.865865 TCTTGTTGAACTCAGACCGC 58.134 50.000 0.00 0.00 0.00 5.68
436 439 4.058124 TCATTCTTGTTGAACTCAGACCG 58.942 43.478 0.00 0.00 37.52 4.79
440 443 4.507756 TCACGTCATTCTTGTTGAACTCAG 59.492 41.667 0.00 0.00 37.52 3.35
446 449 4.023279 CCCAAATCACGTCATTCTTGTTGA 60.023 41.667 0.00 0.00 0.00 3.18
450 453 3.501828 TGTCCCAAATCACGTCATTCTTG 59.498 43.478 0.00 0.00 0.00 3.02
451 454 3.750371 TGTCCCAAATCACGTCATTCTT 58.250 40.909 0.00 0.00 0.00 2.52
454 457 3.750371 TCTTGTCCCAAATCACGTCATT 58.250 40.909 0.00 0.00 0.00 2.57
460 463 4.646492 AGCCAATATCTTGTCCCAAATCAC 59.354 41.667 0.00 0.00 0.00 3.06
465 468 2.358090 CCCAGCCAATATCTTGTCCCAA 60.358 50.000 0.00 0.00 0.00 4.12
492 495 1.090625 ACGTCTCCTCATCCTCGTCG 61.091 60.000 0.00 0.00 0.00 5.12
509 512 1.352156 GCTAGGCCGAGACAACAACG 61.352 60.000 18.16 0.00 0.00 4.10
511 514 0.394938 TTGCTAGGCCGAGACAACAA 59.605 50.000 18.16 8.23 0.00 2.83
512 515 0.320421 GTTGCTAGGCCGAGACAACA 60.320 55.000 29.75 14.46 40.20 3.33
515 518 0.613260 ATTGTTGCTAGGCCGAGACA 59.387 50.000 18.16 10.14 0.00 3.41
517 520 0.901827 TCATTGTTGCTAGGCCGAGA 59.098 50.000 18.16 0.00 0.00 4.04
549 552 2.687200 CCACCACCATCGGAGGGA 60.687 66.667 16.70 0.00 37.77 4.20
570 573 5.009631 CGAGTCTGAGAAGATAGGGATCAT 58.990 45.833 0.00 0.00 34.17 2.45
583 586 1.270678 TGAAGTCGTCCGAGTCTGAGA 60.271 52.381 0.00 0.00 0.00 3.27
588 591 0.040603 ACGTTGAAGTCGTCCGAGTC 60.041 55.000 0.00 0.00 36.85 3.36
603 606 0.531090 TAGTTGGCGCAGAACACGTT 60.531 50.000 19.95 5.58 0.00 3.99
622 625 4.443978 AAGCTATACTTGCCATCACCAT 57.556 40.909 0.00 0.00 37.17 3.55
669 672 8.362639 ACATAACATAATTAGACGGGTTATCGT 58.637 33.333 0.00 0.00 46.83 3.73
670 673 8.752766 ACATAACATAATTAGACGGGTTATCG 57.247 34.615 0.00 0.00 31.21 2.92
816 2879 3.139397 TCCAAAGCCTCCTCAAACCTTAA 59.861 43.478 0.00 0.00 0.00 1.85
817 2880 2.714250 TCCAAAGCCTCCTCAAACCTTA 59.286 45.455 0.00 0.00 0.00 2.69
818 2881 1.499007 TCCAAAGCCTCCTCAAACCTT 59.501 47.619 0.00 0.00 0.00 3.50
819 2882 1.149101 TCCAAAGCCTCCTCAAACCT 58.851 50.000 0.00 0.00 0.00 3.50
820 2883 1.248486 GTCCAAAGCCTCCTCAAACC 58.752 55.000 0.00 0.00 0.00 3.27
821 2884 0.875059 CGTCCAAAGCCTCCTCAAAC 59.125 55.000 0.00 0.00 0.00 2.93
822 2885 0.250727 CCGTCCAAAGCCTCCTCAAA 60.251 55.000 0.00 0.00 0.00 2.69
823 2886 1.374947 CCGTCCAAAGCCTCCTCAA 59.625 57.895 0.00 0.00 0.00 3.02
824 2887 2.592993 CCCGTCCAAAGCCTCCTCA 61.593 63.158 0.00 0.00 0.00 3.86
825 2888 2.269241 CCCGTCCAAAGCCTCCTC 59.731 66.667 0.00 0.00 0.00 3.71
826 2889 4.035102 GCCCGTCCAAAGCCTCCT 62.035 66.667 0.00 0.00 0.00 3.69
827 2890 2.193087 TTAGCCCGTCCAAAGCCTCC 62.193 60.000 0.00 0.00 0.00 4.30
828 2891 0.107165 ATTAGCCCGTCCAAAGCCTC 60.107 55.000 0.00 0.00 0.00 4.70
829 2892 0.331616 AATTAGCCCGTCCAAAGCCT 59.668 50.000 0.00 0.00 0.00 4.58
830 2893 1.182667 AAATTAGCCCGTCCAAAGCC 58.817 50.000 0.00 0.00 0.00 4.35
831 2894 3.313012 AAAAATTAGCCCGTCCAAAGC 57.687 42.857 0.00 0.00 0.00 3.51
839 2902 7.579726 CATCTCAATCTCTAAAAATTAGCCCG 58.420 38.462 0.00 0.00 0.00 6.13
855 2918 1.072159 CGGGGAGGGCATCTCAATC 59.928 63.158 0.00 0.00 44.19 2.67
870 2933 4.760047 CGGGCCAGTTGAGACGGG 62.760 72.222 4.39 0.00 43.16 5.28
879 2942 3.717294 GTCATGGACCGGGCCAGT 61.717 66.667 36.81 20.29 42.15 4.00
922 2989 5.712152 TTGATTTTCCTTCCTCTCTTTGC 57.288 39.130 0.00 0.00 0.00 3.68
1035 3102 0.179100 AGTCGGCGATGGAGAACATG 60.179 55.000 14.79 0.00 40.72 3.21
1069 3136 2.098842 GAGATGGAGAACATGCGCGC 62.099 60.000 27.26 27.26 40.72 6.86
1321 3547 6.755542 ATAAGGCTAAGCAGAGACCTAATT 57.244 37.500 0.00 0.00 0.00 1.40
1335 3561 5.304614 AGCAAGAACGGATCTATAAGGCTAA 59.695 40.000 0.00 0.00 37.42 3.09
1374 3600 8.266473 AGGAATCAGCATCATATCTCCTAATTC 58.734 37.037 0.00 0.00 30.24 2.17
1377 3603 7.565190 AAGGAATCAGCATCATATCTCCTAA 57.435 36.000 0.00 0.00 31.78 2.69
1553 3968 9.284594 GATTGTAGCGTTGATGCTTAAATAAAA 57.715 29.630 2.65 0.00 44.46 1.52
1563 4152 4.963953 GTGTAATGATTGTAGCGTTGATGC 59.036 41.667 0.00 0.00 0.00 3.91
1571 4160 8.690840 GTTTTCTTTGTGTGTAATGATTGTAGC 58.309 33.333 0.00 0.00 0.00 3.58
1585 4174 9.353999 GTTATGAACTCTTTGTTTTCTTTGTGT 57.646 29.630 0.00 0.00 39.30 3.72
1772 4363 1.179152 CATGAATGCAGTGGCCAAGA 58.821 50.000 7.24 0.00 40.13 3.02
1805 4396 2.424956 CTGGAAGCCCATAAACTTCTGC 59.575 50.000 0.00 0.00 42.59 4.26
1936 4529 0.184451 AGCATATCCAGGTGGCAAGG 59.816 55.000 0.00 0.00 34.44 3.61
1946 4539 3.425659 AGCTCGATCTGTAGCATATCCA 58.574 45.455 12.36 0.00 41.32 3.41
1950 4543 2.863809 TGGAGCTCGATCTGTAGCATA 58.136 47.619 7.83 0.00 41.32 3.14
1981 4574 1.913403 CGCTGCCGAAATTCACAAATC 59.087 47.619 0.00 0.00 36.29 2.17
2043 4636 3.453424 CTGGTGCGTATGTGTAATGCTA 58.547 45.455 0.00 0.00 0.00 3.49
2121 4714 1.595357 CGGCGGAGGTTCCTAACTT 59.405 57.895 0.00 0.00 33.30 2.66
2223 4816 4.599500 ACCACCTGTGCCTCCCCT 62.599 66.667 0.00 0.00 0.00 4.79
2251 4844 4.058817 CGTTTGCAGTCTAGAAGAAAGGT 58.941 43.478 0.00 0.00 0.00 3.50
2391 6894 0.395312 AGACCTACAAACACACCCGG 59.605 55.000 0.00 0.00 0.00 5.73
2417 6922 1.539065 GGACTATGCATCCACAGGACG 60.539 57.143 0.19 0.00 36.15 4.79
2459 6964 2.223711 GGCGAAAACCATCACAACTTGT 60.224 45.455 0.00 0.00 0.00 3.16
2470 6975 1.035932 TGGAAAACCGGCGAAAACCA 61.036 50.000 9.30 8.57 0.00 3.67
2499 7004 9.693739 TTTGCCTCATCCATTAATTAAGTAGAA 57.306 29.630 3.94 0.00 0.00 2.10
2500 7005 9.693739 TTTTGCCTCATCCATTAATTAAGTAGA 57.306 29.630 3.94 1.16 0.00 2.59
2501 7006 9.736023 GTTTTGCCTCATCCATTAATTAAGTAG 57.264 33.333 3.94 0.00 0.00 2.57
2502 7007 9.474313 AGTTTTGCCTCATCCATTAATTAAGTA 57.526 29.630 3.94 0.00 0.00 2.24
2503 7008 8.366359 AGTTTTGCCTCATCCATTAATTAAGT 57.634 30.769 3.94 0.00 0.00 2.24
2553 7070 2.386661 AGCGTATGTGTTTCTCCCAG 57.613 50.000 0.00 0.00 0.00 4.45
2573 7091 0.038166 GGCTCATTGGGTCAGTTGGA 59.962 55.000 0.00 0.00 0.00 3.53
2626 7144 2.125512 GCTCCAGTCAATCGCGGT 60.126 61.111 6.13 0.00 0.00 5.68
2630 7148 2.743664 TGTTTGATGCTCCAGTCAATCG 59.256 45.455 0.00 0.00 34.60 3.34
2665 7183 6.238897 GGTCACACAATGAACTGTTTCCATTA 60.239 38.462 7.02 0.00 42.35 1.90
2668 7186 3.380004 GGTCACACAATGAACTGTTTCCA 59.620 43.478 0.00 0.00 42.35 3.53
3055 7576 1.148273 AAGAGGAACGCAGGTTGCA 59.852 52.632 1.69 0.00 45.87 4.08
3078 7600 5.707764 AGGATTTTCTGCTCTCCTTTGTAAC 59.292 40.000 0.00 0.00 34.42 2.50
3081 7603 4.379302 AGGATTTTCTGCTCTCCTTTGT 57.621 40.909 0.00 0.00 34.42 2.83
3111 7633 6.282930 CCATTTGCCCTACCTTTTCATATTG 58.717 40.000 0.00 0.00 0.00 1.90
3167 7692 6.655003 TCAATGGGAGTAAGTCTGAAATGTTC 59.345 38.462 0.00 0.00 0.00 3.18
3233 7759 2.828520 CTCAGTTAGTTGCCTGGAGAGA 59.171 50.000 0.00 0.00 0.00 3.10
3454 7980 8.211629 AGTTAATTTCCCATAGTGATACACTCC 58.788 37.037 7.68 0.00 41.21 3.85
3470 7996 9.803315 GGAATCCACAAAATAGAGTTAATTTCC 57.197 33.333 0.00 0.00 0.00 3.13
3524 8050 5.163405 TGGTGCTCTAGACAAATCCAGATAC 60.163 44.000 0.00 0.00 0.00 2.24
3544 8070 7.981789 TCTTTATGCTCTATGTAAGTTCTGGTG 59.018 37.037 0.00 0.00 0.00 4.17
3609 8135 2.419673 CGTTCTGGCATGCATTGTCTTA 59.580 45.455 21.36 0.00 0.00 2.10
3696 8222 4.541973 TGCTCACTTGACATCATAGTGT 57.458 40.909 16.68 0.00 36.86 3.55
3711 8237 4.880120 TGATTCAAAGAGATGGATGCTCAC 59.120 41.667 0.00 0.00 34.85 3.51
3712 8238 4.880120 GTGATTCAAAGAGATGGATGCTCA 59.120 41.667 0.00 0.00 34.85 4.26
3747 8276 4.974368 TGAAAATTTGGTCTTGTCACGT 57.026 36.364 0.00 0.00 0.00 4.49
3803 8332 2.010145 TCGTGTAGGATCAAGCAAGC 57.990 50.000 0.00 0.00 0.00 4.01
3861 8398 5.103687 GCTTACTACAACTCTACAGGCTTC 58.896 45.833 0.00 0.00 0.00 3.86
3963 8500 7.511809 GGATACAAATTTCAACTAGCTTTGC 57.488 36.000 0.00 0.00 31.59 3.68
4281 8818 2.472695 TTAGCTGCATCTTCAACCGT 57.527 45.000 1.02 0.00 0.00 4.83
4348 8885 7.338196 TCCACAGAAAAAGAACAACAAGTATGA 59.662 33.333 0.00 0.00 0.00 2.15
4349 8886 7.479980 TCCACAGAAAAAGAACAACAAGTATG 58.520 34.615 0.00 0.00 0.00 2.39
4350 8887 7.639113 TCCACAGAAAAAGAACAACAAGTAT 57.361 32.000 0.00 0.00 0.00 2.12
4351 8888 7.338196 TGATCCACAGAAAAAGAACAACAAGTA 59.662 33.333 0.00 0.00 0.00 2.24
4352 8889 5.975693 TCCACAGAAAAAGAACAACAAGT 57.024 34.783 0.00 0.00 0.00 3.16
4353 8890 6.563422 TGATCCACAGAAAAAGAACAACAAG 58.437 36.000 0.00 0.00 0.00 3.16
4354 8891 6.522625 TGATCCACAGAAAAAGAACAACAA 57.477 33.333 0.00 0.00 0.00 2.83
4355 8892 6.713762 ATGATCCACAGAAAAAGAACAACA 57.286 33.333 0.00 0.00 0.00 3.33
4356 8893 9.528018 TTAAATGATCCACAGAAAAAGAACAAC 57.472 29.630 0.00 0.00 0.00 3.32
4465 9008 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4466 9009 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4467 9010 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4468 9011 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4469 9012 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4470 9013 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4471 9014 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4472 9015 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4476 9019 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4477 9020 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4478 9021 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4479 9022 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4480 9023 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4481 9024 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4482 9025 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4483 9026 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4484 9027 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4485 9028 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4486 9029 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4487 9030 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4488 9031 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4489 9032 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4490 9033 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4491 9034 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4503 9046 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
4504 9047 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
4505 9048 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
4506 9049 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
4507 9050 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
4508 9051 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
4509 9052 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
4510 9053 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
4511 9054 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
4512 9055 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
4513 9056 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4514 9057 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4515 9058 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4516 9059 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4517 9060 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4518 9061 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4519 9062 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4520 9063 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
4521 9064 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
4522 9065 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
4523 9066 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4524 9067 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4536 9079 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
4537 9080 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
4538 9081 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
4539 9082 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
4540 9083 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
4541 9084 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4542 9085 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
4543 9086 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
4544 9087 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
4545 9088 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4546 9089 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4547 9090 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
4548 9091 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4549 9092 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
4550 9093 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
4551 9094 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
4552 9095 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4553 9096 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
4554 9097 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4555 9098 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
4556 9099 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
4557 9100 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
4558 9101 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
4559 9102 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4560 9103 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
4561 9104 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
4562 9105 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
4572 9115 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4573 9116 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4574 9117 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4575 9118 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4576 9119 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4577 9120 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4578 9121 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4579 9122 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
4580 9123 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
4581 9124 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4582 9125 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4583 9126 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4584 9127 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4585 9128 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4586 9129 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4587 9130 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4588 9131 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
4589 9132 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
4590 9133 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
4602 9145 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4605 9148 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4606 9149 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4607 9150 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4608 9151 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4614 9157 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
4615 9158 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
4616 9159 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
4617 9160 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
4618 9161 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
4639 9182 7.442364 AGAAAATGAGACAGAGTCGATCAAAAA 59.558 33.333 0.00 0.00 37.67 1.94
4640 9183 6.931281 AGAAAATGAGACAGAGTCGATCAAAA 59.069 34.615 0.00 0.00 37.67 2.44
4641 9184 6.367149 CAGAAAATGAGACAGAGTCGATCAAA 59.633 38.462 0.00 0.00 37.67 2.69
4642 9185 5.866092 CAGAAAATGAGACAGAGTCGATCAA 59.134 40.000 0.00 0.00 37.67 2.57
4643 9186 5.047731 ACAGAAAATGAGACAGAGTCGATCA 60.048 40.000 0.00 0.00 37.67 2.92
4644 9187 5.406649 ACAGAAAATGAGACAGAGTCGATC 58.593 41.667 0.00 0.00 37.67 3.69
4645 9188 5.398603 ACAGAAAATGAGACAGAGTCGAT 57.601 39.130 0.00 0.00 37.67 3.59
4646 9189 4.855715 ACAGAAAATGAGACAGAGTCGA 57.144 40.909 0.00 0.00 37.67 4.20
4647 9190 5.461526 TGTACAGAAAATGAGACAGAGTCG 58.538 41.667 0.00 0.00 37.67 4.18
4648 9191 7.600375 TCATTGTACAGAAAATGAGACAGAGTC 59.400 37.037 4.22 0.00 37.76 3.36
4649 9192 7.445121 TCATTGTACAGAAAATGAGACAGAGT 58.555 34.615 4.22 0.00 37.76 3.24
4650 9193 7.895975 TCATTGTACAGAAAATGAGACAGAG 57.104 36.000 4.22 0.00 37.76 3.35
4651 9194 7.276438 CGATCATTGTACAGAAAATGAGACAGA 59.724 37.037 12.26 0.00 43.88 3.41
4652 9195 7.397194 CGATCATTGTACAGAAAATGAGACAG 58.603 38.462 12.26 2.61 43.88 3.51
4653 9196 6.313658 CCGATCATTGTACAGAAAATGAGACA 59.686 38.462 12.26 0.00 43.88 3.41
4654 9197 6.313905 ACCGATCATTGTACAGAAAATGAGAC 59.686 38.462 12.26 8.64 43.88 3.36
4655 9198 6.313658 CACCGATCATTGTACAGAAAATGAGA 59.686 38.462 12.26 0.00 43.88 3.27
4656 9199 6.481134 CACCGATCATTGTACAGAAAATGAG 58.519 40.000 12.26 3.79 43.88 2.90
4657 9200 5.163764 GCACCGATCATTGTACAGAAAATGA 60.164 40.000 9.74 9.74 44.54 2.57
4658 9201 5.030295 GCACCGATCATTGTACAGAAAATG 58.970 41.667 0.00 0.00 35.52 2.32
4659 9202 4.943705 AGCACCGATCATTGTACAGAAAAT 59.056 37.500 0.00 0.00 0.00 1.82
4660 9203 4.154015 CAGCACCGATCATTGTACAGAAAA 59.846 41.667 0.00 0.00 0.00 2.29
4661 9204 3.684305 CAGCACCGATCATTGTACAGAAA 59.316 43.478 0.00 0.00 0.00 2.52
4662 9205 3.261580 CAGCACCGATCATTGTACAGAA 58.738 45.455 0.00 0.00 0.00 3.02
4663 9206 2.418609 CCAGCACCGATCATTGTACAGA 60.419 50.000 0.00 0.00 0.00 3.41
4664 9207 1.935873 CCAGCACCGATCATTGTACAG 59.064 52.381 0.00 0.00 0.00 2.74
4665 9208 2.011548 GCCAGCACCGATCATTGTACA 61.012 52.381 0.00 0.00 0.00 2.90
4666 9209 0.657840 GCCAGCACCGATCATTGTAC 59.342 55.000 0.00 0.00 0.00 2.90
4821 9373 7.412237 GCCTTTTTGATGAAACAGATGCATTAC 60.412 37.037 0.00 0.00 0.00 1.89
4866 9420 2.167693 CGATTAGTTGAGTAGCCACCCA 59.832 50.000 0.00 0.00 0.00 4.51
4867 9421 2.167900 ACGATTAGTTGAGTAGCCACCC 59.832 50.000 0.00 0.00 0.00 4.61
4886 9440 5.294306 AGAATTACAACCATGCTGATGTACG 59.706 40.000 0.43 0.00 0.00 3.67
5342 9896 6.970484 AGAACGAACTTTGAATTGCAGTATT 58.030 32.000 0.00 0.00 0.00 1.89
5370 9924 7.816640 TGATTGAACATAAGGCTGTACTTTTC 58.183 34.615 0.00 0.00 32.02 2.29
5375 9929 8.438676 AACTATGATTGAACATAAGGCTGTAC 57.561 34.615 0.00 0.00 33.26 2.90
5397 9951 4.874396 GCTCGCTTTACCACCTTATAAACT 59.126 41.667 0.00 0.00 0.00 2.66
5453 11179 2.158755 ACAGCGCCTTAGAAATATGCCT 60.159 45.455 2.29 0.00 0.00 4.75
5588 11314 5.477291 TGTTTAAAACCCGCATAGAATGGAA 59.523 36.000 0.00 0.00 0.00 3.53
5787 11699 8.562892 GCATAATAGTGCAATATGTGAGAACTT 58.437 33.333 18.43 1.34 44.43 2.66
5848 11760 2.736721 CGTAGTCCATGTTCAACCACTG 59.263 50.000 0.00 0.00 0.00 3.66
5868 11780 4.519350 TCATAATACTAGTCAGTGGGAGCG 59.481 45.833 0.00 0.00 36.14 5.03
5897 11892 7.104290 AGCCTCCATTACTTAACAACTACTTC 58.896 38.462 0.00 0.00 0.00 3.01
5898 11893 7.017319 AGCCTCCATTACTTAACAACTACTT 57.983 36.000 0.00 0.00 0.00 2.24
6185 12181 4.976116 ACAAATTAAGCTGCGTCAAACTTC 59.024 37.500 0.00 0.00 0.00 3.01
6209 12206 2.662866 CCATCCATCCAGAAACTGCAT 58.337 47.619 0.00 0.00 0.00 3.96
6370 12370 1.645034 CTGGTTGATACGCTGTCAGG 58.355 55.000 1.14 0.00 0.00 3.86
6385 12385 1.257750 TGTAGACTGCGATGGCTGGT 61.258 55.000 11.11 5.23 41.89 4.00
6586 12589 9.196552 GACAATTCAAATAAAAGGGACAAGAAG 57.803 33.333 0.00 0.00 0.00 2.85
6587 12590 7.865385 CGACAATTCAAATAAAAGGGACAAGAA 59.135 33.333 0.00 0.00 0.00 2.52
6588 12591 7.013846 ACGACAATTCAAATAAAAGGGACAAGA 59.986 33.333 0.00 0.00 0.00 3.02
6668 12671 5.221263 ACGTGTTCTTATTCCGAGCTATGAT 60.221 40.000 0.00 0.00 0.00 2.45
6671 12674 4.650754 ACGTGTTCTTATTCCGAGCTAT 57.349 40.909 0.00 0.00 0.00 2.97
6733 12736 0.392706 ACGTCACCATCAGCTGAACA 59.607 50.000 22.50 0.00 0.00 3.18
6738 12741 0.176680 GATCCACGTCACCATCAGCT 59.823 55.000 0.00 0.00 0.00 4.24
6741 12744 1.066929 CACAGATCCACGTCACCATCA 60.067 52.381 0.00 0.00 0.00 3.07
6745 12748 1.005037 TGCACAGATCCACGTCACC 60.005 57.895 0.00 0.00 0.00 4.02
6747 12750 1.374631 GCTGCACAGATCCACGTCA 60.375 57.895 0.81 0.00 0.00 4.35
6864 12867 3.338249 CAGACCATACCAGGAAACACAG 58.662 50.000 0.00 0.00 0.00 3.66
6886 12889 5.407387 ACAGGCGTACATACAGTAAAAAGTG 59.593 40.000 0.00 0.00 33.72 3.16
6906 12909 6.419116 CGATGATAGTAACAACAGATGACAGG 59.581 42.308 0.00 0.00 0.00 4.00
6925 12928 2.365617 GGATCACAGGTGTACCGATGAT 59.634 50.000 17.54 17.54 43.52 2.45
6980 12983 6.151817 CGGTATCCTCAGATCATCAGTAATCA 59.848 42.308 0.00 0.00 33.67 2.57
6982 12985 5.420421 CCGGTATCCTCAGATCATCAGTAAT 59.580 44.000 0.00 0.00 33.67 1.89
6993 12996 1.683943 CGGTAACCGGTATCCTCAGA 58.316 55.000 8.00 0.00 44.15 3.27
7022 13025 2.093288 TGGAATGCACAGCTAGAAGAGG 60.093 50.000 0.00 0.00 0.00 3.69
7056 13065 0.448990 CATGGACGGCACAGTCAATG 59.551 55.000 4.27 4.27 43.60 2.82
7129 13138 1.478654 GGCAAGTTTCCAGGGTTCTGA 60.479 52.381 0.00 0.00 43.49 3.27
7206 13215 3.356639 GATGCCACGAGAGCACGGA 62.357 63.158 0.00 0.00 44.40 4.69
7207 13216 2.887568 GATGCCACGAGAGCACGG 60.888 66.667 0.00 0.00 44.40 4.94
7221 13230 9.183368 TCTACAGGTAGAGCAGATATTATGATG 57.817 37.037 5.08 0.00 37.28 3.07
7262 13271 1.732941 TTAACAGCCGCCACACATAG 58.267 50.000 0.00 0.00 0.00 2.23
7287 13298 5.279809 GGATTTCCCCCTAAAACTTTGGAAC 60.280 44.000 0.00 0.00 31.95 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.