Multiple sequence alignment - TraesCS7B01G207100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G207100 chr7B 100.000 3065 0 0 1 3065 379730049 379733113 0.000000e+00 5661.0
1 TraesCS7B01G207100 chr7A 94.809 2350 65 12 762 3065 433364446 433366784 0.000000e+00 3611.0
2 TraesCS7B01G207100 chr7A 89.916 119 12 0 500 618 433364251 433364369 1.470000e-33 154.0
3 TraesCS7B01G207100 chr7A 93.750 48 3 0 617 664 433364393 433364440 4.240000e-09 73.1
4 TraesCS7B01G207100 chr7A 92.308 39 3 0 914 952 410952325 410952363 4.270000e-04 56.5
5 TraesCS7B01G207100 chr7D 95.217 2300 60 6 788 3065 385396241 385398512 0.000000e+00 3592.0
6 TraesCS7B01G207100 chr7D 93.802 484 22 4 1 476 97944514 97944031 0.000000e+00 721.0
7 TraesCS7B01G207100 chr7D 88.811 143 13 1 476 618 385395984 385396123 4.060000e-39 172.0
8 TraesCS7B01G207100 chr7D 92.982 57 4 0 617 673 385396147 385396203 1.960000e-12 84.2
9 TraesCS7B01G207100 chr7D 100.000 33 0 0 762 794 385396200 385396232 9.180000e-06 62.1
10 TraesCS7B01G207100 chr2D 95.000 480 20 3 1 476 618886101 618885622 0.000000e+00 750.0
11 TraesCS7B01G207100 chr2D 94.033 486 18 7 1 476 398509471 398509955 0.000000e+00 726.0
12 TraesCS7B01G207100 chr2D 93.983 482 22 5 1 476 152028354 152028834 0.000000e+00 723.0
13 TraesCS7B01G207100 chr2D 93.750 480 25 4 1 476 438014102 438014580 0.000000e+00 715.0
14 TraesCS7B01G207100 chr1D 94.398 482 21 4 1 476 422403009 422402528 0.000000e+00 736.0
15 TraesCS7B01G207100 chr4A 94.142 478 25 3 1 478 32681192 32681666 0.000000e+00 725.0
16 TraesCS7B01G207100 chr3D 93.673 490 21 7 3 486 524012744 524012259 0.000000e+00 725.0
17 TraesCS7B01G207100 chr5D 93.814 485 21 7 1 479 365155578 365155097 0.000000e+00 721.0
18 TraesCS7B01G207100 chr5B 92.793 111 6 2 998 1106 13384673 13384563 3.160000e-35 159.0
19 TraesCS7B01G207100 chr4D 93.396 106 7 0 997 1102 97381256 97381361 1.140000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G207100 chr7B 379730049 379733113 3064 False 5661.000000 5661 100.0000 1 3065 1 chr7B.!!$F1 3064
1 TraesCS7B01G207100 chr7A 433364251 433366784 2533 False 1279.366667 3611 92.8250 500 3065 3 chr7A.!!$F2 2565
2 TraesCS7B01G207100 chr7D 385395984 385398512 2528 False 977.575000 3592 94.2525 476 3065 4 chr7D.!!$F1 2589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 785 0.030369 CGAGTATTCCGAACGGAGGG 59.970 60.0 15.34 0.73 46.06 4.30 F
760 786 1.396653 GAGTATTCCGAACGGAGGGA 58.603 55.0 15.34 2.49 46.06 4.20 F
1842 1927 0.768622 ACGACCTGTCCAAAATCCCA 59.231 50.0 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 1920 0.394352 GGCCACGATGTCTGGGATTT 60.394 55.0 0.00 0.0 0.00 2.17 R
2031 2116 1.087771 GTGTCCGGGCTAATTCCACG 61.088 60.0 7.97 0.0 0.00 4.94 R
2643 2729 5.047377 ACGTGGAAAAATTAGCACAATCCAT 60.047 36.0 0.00 0.0 37.76 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.722700 CCGTGGCCCTGGGAGTTG 62.723 72.222 19.27 2.48 0.00 3.16
27 28 4.722700 CGTGGCCCTGGGAGTTGG 62.723 72.222 19.27 0.00 0.00 3.77
28 29 3.580319 GTGGCCCTGGGAGTTGGT 61.580 66.667 19.27 0.00 0.00 3.67
29 30 3.579302 TGGCCCTGGGAGTTGGTG 61.579 66.667 19.27 0.00 0.00 4.17
32 33 4.722700 CCCTGGGAGTTGGTGCGG 62.723 72.222 7.01 0.00 0.00 5.69
33 34 3.953775 CCTGGGAGTTGGTGCGGT 61.954 66.667 0.00 0.00 0.00 5.68
34 35 2.669569 CTGGGAGTTGGTGCGGTG 60.670 66.667 0.00 0.00 0.00 4.94
35 36 4.263572 TGGGAGTTGGTGCGGTGG 62.264 66.667 0.00 0.00 0.00 4.61
36 37 3.948719 GGGAGTTGGTGCGGTGGA 61.949 66.667 0.00 0.00 0.00 4.02
37 38 2.112297 GGAGTTGGTGCGGTGGAA 59.888 61.111 0.00 0.00 0.00 3.53
38 39 1.966451 GGAGTTGGTGCGGTGGAAG 60.966 63.158 0.00 0.00 0.00 3.46
39 40 2.594592 AGTTGGTGCGGTGGAAGC 60.595 61.111 0.00 0.00 0.00 3.86
48 49 2.281484 GGTGGAAGCGGCACTTGA 60.281 61.111 1.45 0.00 39.29 3.02
49 50 1.896660 GGTGGAAGCGGCACTTGAA 60.897 57.895 1.45 0.00 39.29 2.69
50 51 1.576421 GTGGAAGCGGCACTTGAAG 59.424 57.895 1.45 0.00 39.29 3.02
51 52 1.600636 TGGAAGCGGCACTTGAAGG 60.601 57.895 1.45 0.00 39.29 3.46
52 53 1.302511 GGAAGCGGCACTTGAAGGA 60.303 57.895 1.45 0.00 39.29 3.36
53 54 1.578206 GGAAGCGGCACTTGAAGGAC 61.578 60.000 1.45 0.00 39.29 3.85
54 55 1.578206 GAAGCGGCACTTGAAGGACC 61.578 60.000 1.45 0.00 39.29 4.46
55 56 3.056328 GCGGCACTTGAAGGACCC 61.056 66.667 0.00 0.00 0.00 4.46
56 57 2.742372 CGGCACTTGAAGGACCCG 60.742 66.667 0.00 1.63 0.00 5.28
57 58 2.359975 GGCACTTGAAGGACCCGG 60.360 66.667 0.00 0.00 0.00 5.73
58 59 3.056328 GCACTTGAAGGACCCGGC 61.056 66.667 0.00 0.00 0.00 6.13
59 60 2.742372 CACTTGAAGGACCCGGCG 60.742 66.667 0.00 0.00 0.00 6.46
60 61 3.239253 ACTTGAAGGACCCGGCGT 61.239 61.111 6.01 0.00 0.00 5.68
61 62 2.742372 CTTGAAGGACCCGGCGTG 60.742 66.667 6.01 0.00 0.00 5.34
62 63 4.323477 TTGAAGGACCCGGCGTGG 62.323 66.667 6.01 9.63 37.55 4.94
90 91 2.856032 CGCAGACGCACTTGGAAG 59.144 61.111 0.00 0.00 38.40 3.46
91 92 2.558313 GCAGACGCACTTGGAAGC 59.442 61.111 0.00 0.00 38.36 3.86
149 150 2.682494 GGCCACCTCCTCCGTGTA 60.682 66.667 0.00 0.00 0.00 2.90
150 151 2.064581 GGCCACCTCCTCCGTGTAT 61.065 63.158 0.00 0.00 0.00 2.29
151 152 1.623542 GGCCACCTCCTCCGTGTATT 61.624 60.000 0.00 0.00 0.00 1.89
152 153 0.179081 GCCACCTCCTCCGTGTATTC 60.179 60.000 0.00 0.00 0.00 1.75
153 154 1.486211 CCACCTCCTCCGTGTATTCT 58.514 55.000 0.00 0.00 0.00 2.40
154 155 1.831736 CCACCTCCTCCGTGTATTCTT 59.168 52.381 0.00 0.00 0.00 2.52
155 156 2.418746 CCACCTCCTCCGTGTATTCTTG 60.419 54.545 0.00 0.00 0.00 3.02
156 157 1.831736 ACCTCCTCCGTGTATTCTTGG 59.168 52.381 0.00 0.00 0.00 3.61
157 158 2.108168 CCTCCTCCGTGTATTCTTGGA 58.892 52.381 0.00 0.00 0.00 3.53
158 159 2.101582 CCTCCTCCGTGTATTCTTGGAG 59.898 54.545 0.00 0.00 46.10 3.86
159 160 1.480954 TCCTCCGTGTATTCTTGGAGC 59.519 52.381 1.58 0.00 45.36 4.70
160 161 1.482593 CCTCCGTGTATTCTTGGAGCT 59.517 52.381 1.58 0.00 45.36 4.09
161 162 2.544685 CTCCGTGTATTCTTGGAGCTG 58.455 52.381 0.00 0.00 41.36 4.24
162 163 1.899814 TCCGTGTATTCTTGGAGCTGT 59.100 47.619 0.00 0.00 0.00 4.40
163 164 2.002586 CCGTGTATTCTTGGAGCTGTG 58.997 52.381 0.00 0.00 0.00 3.66
164 165 2.002586 CGTGTATTCTTGGAGCTGTGG 58.997 52.381 0.00 0.00 0.00 4.17
165 166 1.740025 GTGTATTCTTGGAGCTGTGGC 59.260 52.381 0.00 0.00 39.06 5.01
175 176 3.064324 GCTGTGGCTGGCCGATTT 61.064 61.111 7.14 0.00 39.42 2.17
176 177 1.748879 GCTGTGGCTGGCCGATTTA 60.749 57.895 7.14 0.00 39.42 1.40
177 178 1.993369 GCTGTGGCTGGCCGATTTAC 61.993 60.000 7.14 0.00 39.42 2.01
178 179 0.676466 CTGTGGCTGGCCGATTTACA 60.676 55.000 7.14 4.58 39.42 2.41
179 180 0.034574 TGTGGCTGGCCGATTTACAT 60.035 50.000 7.14 0.00 39.42 2.29
180 181 0.381801 GTGGCTGGCCGATTTACATG 59.618 55.000 7.14 0.00 39.42 3.21
181 182 0.254462 TGGCTGGCCGATTTACATGA 59.746 50.000 0.00 0.00 39.42 3.07
182 183 1.340502 TGGCTGGCCGATTTACATGAA 60.341 47.619 0.00 0.00 39.42 2.57
183 184 1.748493 GGCTGGCCGATTTACATGAAA 59.252 47.619 0.00 0.00 0.00 2.69
184 185 2.362077 GGCTGGCCGATTTACATGAAAT 59.638 45.455 0.00 1.08 40.62 2.17
185 186 3.181476 GGCTGGCCGATTTACATGAAATT 60.181 43.478 0.00 0.00 37.90 1.82
186 187 4.037446 GGCTGGCCGATTTACATGAAATTA 59.963 41.667 0.00 0.00 37.90 1.40
187 188 5.451242 GGCTGGCCGATTTACATGAAATTAA 60.451 40.000 0.00 0.00 37.90 1.40
188 189 6.215845 GCTGGCCGATTTACATGAAATTAAT 58.784 36.000 0.00 0.00 37.90 1.40
189 190 6.701400 GCTGGCCGATTTACATGAAATTAATT 59.299 34.615 0.00 0.00 37.90 1.40
190 191 7.096065 GCTGGCCGATTTACATGAAATTAATTC 60.096 37.037 0.00 0.00 37.90 2.17
191 192 7.206687 TGGCCGATTTACATGAAATTAATTCC 58.793 34.615 0.00 0.00 37.90 3.01
192 193 6.645003 GGCCGATTTACATGAAATTAATTCCC 59.355 38.462 0.00 0.00 37.90 3.97
193 194 7.433680 GCCGATTTACATGAAATTAATTCCCT 58.566 34.615 0.00 0.00 37.90 4.20
194 195 7.595130 GCCGATTTACATGAAATTAATTCCCTC 59.405 37.037 0.00 0.00 37.90 4.30
195 196 7.803189 CCGATTTACATGAAATTAATTCCCTCG 59.197 37.037 0.00 1.51 37.90 4.63
196 197 7.803189 CGATTTACATGAAATTAATTCCCTCGG 59.197 37.037 0.00 0.00 37.90 4.63
197 198 7.948034 TTTACATGAAATTAATTCCCTCGGT 57.052 32.000 0.00 1.90 37.22 4.69
198 199 7.948034 TTACATGAAATTAATTCCCTCGGTT 57.052 32.000 0.00 0.00 37.22 4.44
199 200 6.207691 ACATGAAATTAATTCCCTCGGTTG 57.792 37.500 0.00 0.00 37.22 3.77
200 201 5.714806 ACATGAAATTAATTCCCTCGGTTGT 59.285 36.000 0.00 0.00 37.22 3.32
201 202 5.637006 TGAAATTAATTCCCTCGGTTGTG 57.363 39.130 0.10 0.00 37.22 3.33
202 203 4.461081 TGAAATTAATTCCCTCGGTTGTGG 59.539 41.667 0.10 0.00 37.22 4.17
203 204 3.732048 ATTAATTCCCTCGGTTGTGGT 57.268 42.857 0.00 0.00 0.00 4.16
204 205 2.483014 TAATTCCCTCGGTTGTGGTG 57.517 50.000 0.00 0.00 0.00 4.17
205 206 0.251165 AATTCCCTCGGTTGTGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
206 207 2.764637 ATTCCCTCGGTTGTGGTGGC 62.765 60.000 0.00 0.00 0.00 5.01
207 208 4.263572 CCCTCGGTTGTGGTGGCA 62.264 66.667 0.00 0.00 0.00 4.92
208 209 2.203280 CCTCGGTTGTGGTGGCAA 60.203 61.111 0.00 0.00 0.00 4.52
209 210 1.826054 CCTCGGTTGTGGTGGCAAA 60.826 57.895 0.00 0.00 0.00 3.68
210 211 1.178534 CCTCGGTTGTGGTGGCAAAT 61.179 55.000 0.00 0.00 0.00 2.32
211 212 1.529226 CTCGGTTGTGGTGGCAAATA 58.471 50.000 0.00 0.00 0.00 1.40
212 213 2.091541 CTCGGTTGTGGTGGCAAATAT 58.908 47.619 0.00 0.00 0.00 1.28
213 214 3.275143 CTCGGTTGTGGTGGCAAATATA 58.725 45.455 0.00 0.00 0.00 0.86
214 215 3.687125 TCGGTTGTGGTGGCAAATATAA 58.313 40.909 0.00 0.00 0.00 0.98
215 216 4.274147 TCGGTTGTGGTGGCAAATATAAT 58.726 39.130 0.00 0.00 0.00 1.28
216 217 5.437946 TCGGTTGTGGTGGCAAATATAATA 58.562 37.500 0.00 0.00 0.00 0.98
217 218 5.297278 TCGGTTGTGGTGGCAAATATAATAC 59.703 40.000 0.00 0.00 0.00 1.89
218 219 5.066634 CGGTTGTGGTGGCAAATATAATACA 59.933 40.000 0.00 0.00 0.00 2.29
219 220 6.270064 GGTTGTGGTGGCAAATATAATACAC 58.730 40.000 0.00 0.00 0.00 2.90
220 221 6.127591 GGTTGTGGTGGCAAATATAATACACA 60.128 38.462 0.00 0.00 34.88 3.72
221 222 7.417342 GGTTGTGGTGGCAAATATAATACACAT 60.417 37.037 0.00 0.00 36.38 3.21
222 223 8.625651 GTTGTGGTGGCAAATATAATACACATA 58.374 33.333 0.00 0.00 36.38 2.29
223 224 8.753497 TGTGGTGGCAAATATAATACACATAA 57.247 30.769 0.00 0.00 32.12 1.90
224 225 9.360901 TGTGGTGGCAAATATAATACACATAAT 57.639 29.630 0.00 0.00 32.12 1.28
225 226 9.840427 GTGGTGGCAAATATAATACACATAATC 57.160 33.333 0.00 0.00 0.00 1.75
226 227 9.019656 TGGTGGCAAATATAATACACATAATCC 57.980 33.333 0.00 0.00 0.00 3.01
227 228 9.019656 GGTGGCAAATATAATACACATAATCCA 57.980 33.333 0.00 0.00 0.00 3.41
247 248 7.776933 ATCCATATTATTATGCACTAGCGTG 57.223 36.000 0.00 0.00 46.23 5.34
248 249 6.697395 TCCATATTATTATGCACTAGCGTGT 58.303 36.000 0.00 0.00 46.23 4.49
249 250 6.589907 TCCATATTATTATGCACTAGCGTGTG 59.410 38.462 7.59 7.59 46.23 3.82
250 251 6.368791 CCATATTATTATGCACTAGCGTGTGT 59.631 38.462 12.36 0.00 46.23 3.72
251 252 5.657470 ATTATTATGCACTAGCGTGTGTG 57.343 39.130 12.36 5.74 46.23 3.82
252 253 2.448926 TTATGCACTAGCGTGTGTGT 57.551 45.000 12.36 5.67 46.23 3.72
253 254 1.708822 TATGCACTAGCGTGTGTGTG 58.291 50.000 12.36 0.00 46.23 3.82
254 255 0.033366 ATGCACTAGCGTGTGTGTGA 59.967 50.000 12.36 0.00 46.23 3.58
255 256 0.179097 TGCACTAGCGTGTGTGTGAA 60.179 50.000 12.36 0.00 46.23 3.18
256 257 0.934496 GCACTAGCGTGTGTGTGAAA 59.066 50.000 12.36 0.00 43.16 2.69
257 258 1.531149 GCACTAGCGTGTGTGTGAAAT 59.469 47.619 12.36 0.00 43.16 2.17
258 259 2.734606 GCACTAGCGTGTGTGTGAAATA 59.265 45.455 12.36 0.00 43.16 1.40
259 260 3.181530 GCACTAGCGTGTGTGTGAAATAG 60.182 47.826 12.36 0.00 43.16 1.73
260 261 4.234574 CACTAGCGTGTGTGTGAAATAGA 58.765 43.478 4.34 0.00 36.39 1.98
261 262 4.864806 CACTAGCGTGTGTGTGAAATAGAT 59.135 41.667 4.34 0.00 36.39 1.98
262 263 4.864806 ACTAGCGTGTGTGTGAAATAGATG 59.135 41.667 0.00 0.00 0.00 2.90
263 264 3.002791 AGCGTGTGTGTGAAATAGATGG 58.997 45.455 0.00 0.00 0.00 3.51
264 265 3.000041 GCGTGTGTGTGAAATAGATGGA 59.000 45.455 0.00 0.00 0.00 3.41
265 266 3.623060 GCGTGTGTGTGAAATAGATGGAT 59.377 43.478 0.00 0.00 0.00 3.41
266 267 4.094887 GCGTGTGTGTGAAATAGATGGATT 59.905 41.667 0.00 0.00 0.00 3.01
267 268 5.293324 GCGTGTGTGTGAAATAGATGGATTA 59.707 40.000 0.00 0.00 0.00 1.75
268 269 6.017934 GCGTGTGTGTGAAATAGATGGATTAT 60.018 38.462 0.00 0.00 0.00 1.28
269 270 7.347448 CGTGTGTGTGAAATAGATGGATTATG 58.653 38.462 0.00 0.00 0.00 1.90
270 271 7.518848 CGTGTGTGTGAAATAGATGGATTATGG 60.519 40.741 0.00 0.00 0.00 2.74
271 272 7.283127 GTGTGTGTGAAATAGATGGATTATGGT 59.717 37.037 0.00 0.00 0.00 3.55
272 273 7.498900 TGTGTGTGAAATAGATGGATTATGGTC 59.501 37.037 0.00 0.00 0.00 4.02
273 274 6.998074 TGTGTGAAATAGATGGATTATGGTCC 59.002 38.462 0.00 0.00 38.81 4.46
274 275 6.431234 GTGTGAAATAGATGGATTATGGTCCC 59.569 42.308 0.00 0.00 37.48 4.46
275 276 5.643777 GTGAAATAGATGGATTATGGTCCCG 59.356 44.000 0.00 0.00 37.48 5.14
276 277 5.309543 TGAAATAGATGGATTATGGTCCCGT 59.690 40.000 0.00 0.00 37.48 5.28
277 278 6.499000 TGAAATAGATGGATTATGGTCCCGTA 59.501 38.462 0.00 0.00 37.48 4.02
278 279 5.934402 ATAGATGGATTATGGTCCCGTAC 57.066 43.478 0.00 0.00 37.48 3.67
290 291 4.532314 GGTCCCGTACCTAATAAGATGG 57.468 50.000 0.00 0.00 45.75 3.51
291 292 4.154942 GGTCCCGTACCTAATAAGATGGA 58.845 47.826 0.00 0.00 45.75 3.41
292 293 4.776308 GGTCCCGTACCTAATAAGATGGAT 59.224 45.833 0.00 0.00 45.75 3.41
293 294 5.954150 GGTCCCGTACCTAATAAGATGGATA 59.046 44.000 0.00 0.00 45.75 2.59
294 295 6.610425 GGTCCCGTACCTAATAAGATGGATAT 59.390 42.308 0.00 0.00 45.75 1.63
295 296 7.417570 GGTCCCGTACCTAATAAGATGGATATG 60.418 44.444 0.00 0.00 45.75 1.78
296 297 7.123847 GTCCCGTACCTAATAAGATGGATATGT 59.876 40.741 0.00 0.00 0.00 2.29
297 298 7.123697 TCCCGTACCTAATAAGATGGATATGTG 59.876 40.741 0.00 0.00 0.00 3.21
298 299 7.093465 CCCGTACCTAATAAGATGGATATGTGT 60.093 40.741 0.00 0.00 0.00 3.72
299 300 7.759886 CCGTACCTAATAAGATGGATATGTGTG 59.240 40.741 0.00 0.00 0.00 3.82
300 301 8.304596 CGTACCTAATAAGATGGATATGTGTGT 58.695 37.037 0.00 0.00 0.00 3.72
301 302 9.424319 GTACCTAATAAGATGGATATGTGTGTG 57.576 37.037 0.00 0.00 0.00 3.82
302 303 8.034313 ACCTAATAAGATGGATATGTGTGTGT 57.966 34.615 0.00 0.00 0.00 3.72
303 304 7.933577 ACCTAATAAGATGGATATGTGTGTGTG 59.066 37.037 0.00 0.00 0.00 3.82
304 305 7.933577 CCTAATAAGATGGATATGTGTGTGTGT 59.066 37.037 0.00 0.00 0.00 3.72
305 306 9.330063 CTAATAAGATGGATATGTGTGTGTGTT 57.670 33.333 0.00 0.00 0.00 3.32
307 308 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
308 309 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
309 310 6.577103 AGATGGATATGTGTGTGTGTTAGAG 58.423 40.000 0.00 0.00 0.00 2.43
310 311 5.993748 TGGATATGTGTGTGTGTTAGAGA 57.006 39.130 0.00 0.00 0.00 3.10
311 312 5.965922 TGGATATGTGTGTGTGTTAGAGAG 58.034 41.667 0.00 0.00 0.00 3.20
312 313 5.714806 TGGATATGTGTGTGTGTTAGAGAGA 59.285 40.000 0.00 0.00 0.00 3.10
313 314 6.127619 TGGATATGTGTGTGTGTTAGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
314 315 6.095580 GGATATGTGTGTGTGTTAGAGAGAGA 59.904 42.308 0.00 0.00 0.00 3.10
315 316 4.837896 TGTGTGTGTGTTAGAGAGAGAG 57.162 45.455 0.00 0.00 0.00 3.20
316 317 4.461198 TGTGTGTGTGTTAGAGAGAGAGA 58.539 43.478 0.00 0.00 0.00 3.10
317 318 4.517075 TGTGTGTGTGTTAGAGAGAGAGAG 59.483 45.833 0.00 0.00 0.00 3.20
318 319 4.757657 GTGTGTGTGTTAGAGAGAGAGAGA 59.242 45.833 0.00 0.00 0.00 3.10
319 320 5.000591 TGTGTGTGTTAGAGAGAGAGAGAG 58.999 45.833 0.00 0.00 0.00 3.20
320 321 4.394920 GTGTGTGTTAGAGAGAGAGAGAGG 59.605 50.000 0.00 0.00 0.00 3.69
321 322 3.945285 GTGTGTTAGAGAGAGAGAGAGGG 59.055 52.174 0.00 0.00 0.00 4.30
322 323 3.847184 TGTGTTAGAGAGAGAGAGAGGGA 59.153 47.826 0.00 0.00 0.00 4.20
323 324 4.080582 TGTGTTAGAGAGAGAGAGAGGGAG 60.081 50.000 0.00 0.00 0.00 4.30
324 325 4.163458 GTGTTAGAGAGAGAGAGAGGGAGA 59.837 50.000 0.00 0.00 0.00 3.71
325 326 4.408921 TGTTAGAGAGAGAGAGAGGGAGAG 59.591 50.000 0.00 0.00 0.00 3.20
326 327 2.412591 AGAGAGAGAGAGAGGGAGAGG 58.587 57.143 0.00 0.00 0.00 3.69
327 328 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
328 329 0.478507 GAGAGAGAGAGGGAGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
329 330 0.998945 AGAGAGAGAGGGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
330 331 0.996762 GAGAGAGAGGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
331 332 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
332 333 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
333 334 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
334 335 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
335 336 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
336 337 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
337 338 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
338 339 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
339 340 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
340 341 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
341 342 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
342 343 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
343 344 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
344 345 0.336737 GGGGGAGAGAGAGTGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
345 346 1.687996 GGGGGAGAGAGAGTGAGGAAG 60.688 61.905 0.00 0.00 0.00 3.46
346 347 1.286553 GGGGAGAGAGAGTGAGGAAGA 59.713 57.143 0.00 0.00 0.00 2.87
347 348 2.291930 GGGGAGAGAGAGTGAGGAAGAA 60.292 54.545 0.00 0.00 0.00 2.52
348 349 3.023832 GGGAGAGAGAGTGAGGAAGAAG 58.976 54.545 0.00 0.00 0.00 2.85
349 350 3.023832 GGAGAGAGAGTGAGGAAGAAGG 58.976 54.545 0.00 0.00 0.00 3.46
350 351 3.308832 GGAGAGAGAGTGAGGAAGAAGGA 60.309 52.174 0.00 0.00 0.00 3.36
351 352 3.947834 GAGAGAGAGTGAGGAAGAAGGAG 59.052 52.174 0.00 0.00 0.00 3.69
352 353 3.023832 GAGAGAGTGAGGAAGAAGGAGG 58.976 54.545 0.00 0.00 0.00 4.30
353 354 2.652348 AGAGAGTGAGGAAGAAGGAGGA 59.348 50.000 0.00 0.00 0.00 3.71
354 355 3.076785 AGAGAGTGAGGAAGAAGGAGGAA 59.923 47.826 0.00 0.00 0.00 3.36
355 356 3.440127 AGAGTGAGGAAGAAGGAGGAAG 58.560 50.000 0.00 0.00 0.00 3.46
356 357 3.169908 GAGTGAGGAAGAAGGAGGAAGT 58.830 50.000 0.00 0.00 0.00 3.01
357 358 2.903135 AGTGAGGAAGAAGGAGGAAGTG 59.097 50.000 0.00 0.00 0.00 3.16
358 359 2.635427 GTGAGGAAGAAGGAGGAAGTGT 59.365 50.000 0.00 0.00 0.00 3.55
359 360 2.634940 TGAGGAAGAAGGAGGAAGTGTG 59.365 50.000 0.00 0.00 0.00 3.82
360 361 2.635427 GAGGAAGAAGGAGGAAGTGTGT 59.365 50.000 0.00 0.00 0.00 3.72
361 362 2.370189 AGGAAGAAGGAGGAAGTGTGTG 59.630 50.000 0.00 0.00 0.00 3.82
362 363 2.104963 GGAAGAAGGAGGAAGTGTGTGT 59.895 50.000 0.00 0.00 0.00 3.72
363 364 2.918712 AGAAGGAGGAAGTGTGTGTG 57.081 50.000 0.00 0.00 0.00 3.82
364 365 2.119495 AGAAGGAGGAAGTGTGTGTGT 58.881 47.619 0.00 0.00 0.00 3.72
365 366 2.158900 AGAAGGAGGAAGTGTGTGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
366 367 1.496060 AGGAGGAAGTGTGTGTGTGA 58.504 50.000 0.00 0.00 0.00 3.58
367 368 1.414181 AGGAGGAAGTGTGTGTGTGAG 59.586 52.381 0.00 0.00 0.00 3.51
368 369 1.541233 GGAGGAAGTGTGTGTGTGAGG 60.541 57.143 0.00 0.00 0.00 3.86
369 370 1.412710 GAGGAAGTGTGTGTGTGAGGA 59.587 52.381 0.00 0.00 0.00 3.71
370 371 2.037772 GAGGAAGTGTGTGTGTGAGGAT 59.962 50.000 0.00 0.00 0.00 3.24
371 372 2.439507 AGGAAGTGTGTGTGTGAGGATT 59.560 45.455 0.00 0.00 0.00 3.01
372 373 3.117888 AGGAAGTGTGTGTGTGAGGATTT 60.118 43.478 0.00 0.00 0.00 2.17
373 374 3.003689 GGAAGTGTGTGTGTGAGGATTTG 59.996 47.826 0.00 0.00 0.00 2.32
374 375 3.558931 AGTGTGTGTGTGAGGATTTGA 57.441 42.857 0.00 0.00 0.00 2.69
375 376 4.090761 AGTGTGTGTGTGAGGATTTGAT 57.909 40.909 0.00 0.00 0.00 2.57
376 377 3.817084 AGTGTGTGTGTGAGGATTTGATG 59.183 43.478 0.00 0.00 0.00 3.07
377 378 3.814842 GTGTGTGTGTGAGGATTTGATGA 59.185 43.478 0.00 0.00 0.00 2.92
378 379 4.456911 GTGTGTGTGTGAGGATTTGATGAT 59.543 41.667 0.00 0.00 0.00 2.45
379 380 5.643348 GTGTGTGTGTGAGGATTTGATGATA 59.357 40.000 0.00 0.00 0.00 2.15
380 381 6.149308 GTGTGTGTGTGAGGATTTGATGATAA 59.851 38.462 0.00 0.00 0.00 1.75
381 382 6.714356 TGTGTGTGTGAGGATTTGATGATAAA 59.286 34.615 0.00 0.00 0.00 1.40
382 383 7.230309 TGTGTGTGTGAGGATTTGATGATAAAA 59.770 33.333 0.00 0.00 0.00 1.52
383 384 8.081633 GTGTGTGTGAGGATTTGATGATAAAAA 58.918 33.333 0.00 0.00 0.00 1.94
402 403 4.654091 AAAAGGTCACCAATGTCACTTG 57.346 40.909 0.00 0.00 0.00 3.16
403 404 3.576078 AAGGTCACCAATGTCACTTGA 57.424 42.857 0.00 0.00 0.00 3.02
404 405 3.795688 AGGTCACCAATGTCACTTGAT 57.204 42.857 0.00 0.00 0.00 2.57
405 406 4.908601 AGGTCACCAATGTCACTTGATA 57.091 40.909 0.00 0.00 0.00 2.15
406 407 5.441718 AGGTCACCAATGTCACTTGATAT 57.558 39.130 0.00 0.00 0.00 1.63
407 408 5.188434 AGGTCACCAATGTCACTTGATATG 58.812 41.667 0.00 0.00 0.00 1.78
408 409 4.943705 GGTCACCAATGTCACTTGATATGT 59.056 41.667 0.00 0.00 0.00 2.29
409 410 6.070251 AGGTCACCAATGTCACTTGATATGTA 60.070 38.462 0.00 0.00 0.00 2.29
410 411 6.767902 GGTCACCAATGTCACTTGATATGTAT 59.232 38.462 0.00 0.00 0.00 2.29
411 412 7.254898 GGTCACCAATGTCACTTGATATGTATG 60.255 40.741 0.00 0.00 0.00 2.39
412 413 7.495606 GTCACCAATGTCACTTGATATGTATGA 59.504 37.037 0.00 0.00 0.00 2.15
413 414 7.712205 TCACCAATGTCACTTGATATGTATGAG 59.288 37.037 0.00 0.00 0.00 2.90
414 415 7.712205 CACCAATGTCACTTGATATGTATGAGA 59.288 37.037 0.00 0.00 0.00 3.27
415 416 8.267183 ACCAATGTCACTTGATATGTATGAGAA 58.733 33.333 0.00 0.00 0.00 2.87
416 417 9.281371 CCAATGTCACTTGATATGTATGAGAAT 57.719 33.333 0.00 0.00 0.00 2.40
449 450 5.977489 AACTCTTAAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
450 451 4.341487 ACTCTTAAAGTTAATGTGGCCCC 58.659 43.478 0.00 0.00 33.03 5.80
451 452 3.349022 TCTTAAAGTTAATGTGGCCCCG 58.651 45.455 0.00 0.00 0.00 5.73
452 453 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
453 454 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
454 455 2.883122 AAGTTAATGTGGCCCCGTTA 57.117 45.000 0.00 0.00 0.00 3.18
455 456 2.118313 AGTTAATGTGGCCCCGTTAC 57.882 50.000 0.00 0.00 0.00 2.50
456 457 1.351683 AGTTAATGTGGCCCCGTTACA 59.648 47.619 0.00 0.00 0.00 2.41
457 458 2.161030 GTTAATGTGGCCCCGTTACAA 58.839 47.619 0.00 0.00 0.00 2.41
458 459 1.823797 TAATGTGGCCCCGTTACAAC 58.176 50.000 0.00 0.00 0.00 3.32
481 482 3.489738 GCACGGGCGTTCTTCTAATACTA 60.490 47.826 0.00 0.00 0.00 1.82
561 562 7.884877 TGTCCAAAAGATACTCAACTGAATGAT 59.115 33.333 0.00 0.00 0.00 2.45
574 575 5.395325 ACTGAATGATCAAAAGATACGCG 57.605 39.130 3.53 3.53 34.49 6.01
581 582 5.109210 TGATCAAAAGATACGCGTTCATCT 58.891 37.500 20.78 18.37 32.85 2.90
582 583 5.580691 TGATCAAAAGATACGCGTTCATCTT 59.419 36.000 24.68 24.68 42.03 2.40
611 612 1.016627 GCGATGCAGCCAACATCTAA 58.983 50.000 0.00 0.00 41.45 2.10
621 647 4.043596 AGCCAACATCTAAGGAAGAGGAT 58.956 43.478 0.00 0.00 38.30 3.24
650 676 0.734889 ATCTGCCAAAAATCGCGAGG 59.265 50.000 16.66 11.26 0.00 4.63
672 698 3.496131 CACCCGCCACGCATGTAC 61.496 66.667 0.00 0.00 0.00 2.90
673 699 3.702048 ACCCGCCACGCATGTACT 61.702 61.111 0.00 0.00 0.00 2.73
674 700 2.435938 CCCGCCACGCATGTACTT 60.436 61.111 0.00 0.00 0.00 2.24
675 701 2.461110 CCCGCCACGCATGTACTTC 61.461 63.158 0.00 0.00 0.00 3.01
676 702 2.461110 CCGCCACGCATGTACTTCC 61.461 63.158 0.00 0.00 0.00 3.46
677 703 1.447838 CGCCACGCATGTACTTCCT 60.448 57.895 0.00 0.00 0.00 3.36
678 704 1.421410 CGCCACGCATGTACTTCCTC 61.421 60.000 0.00 0.00 0.00 3.71
679 705 1.090052 GCCACGCATGTACTTCCTCC 61.090 60.000 0.00 0.00 0.00 4.30
680 706 0.249120 CCACGCATGTACTTCCTCCA 59.751 55.000 0.00 0.00 0.00 3.86
681 707 1.134401 CCACGCATGTACTTCCTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
682 708 2.205074 CACGCATGTACTTCCTCCATC 58.795 52.381 0.00 0.00 0.00 3.51
683 709 2.111384 ACGCATGTACTTCCTCCATCT 58.889 47.619 0.00 0.00 0.00 2.90
684 710 2.159043 ACGCATGTACTTCCTCCATCTG 60.159 50.000 0.00 0.00 0.00 2.90
685 711 2.804572 CGCATGTACTTCCTCCATCTGG 60.805 54.545 0.00 0.00 0.00 3.86
686 712 2.435805 GCATGTACTTCCTCCATCTGGA 59.564 50.000 0.00 0.00 43.08 3.86
687 713 3.118261 GCATGTACTTCCTCCATCTGGAA 60.118 47.826 0.00 0.00 44.91 3.53
688 714 4.626287 GCATGTACTTCCTCCATCTGGAAA 60.626 45.833 0.00 0.00 44.91 3.13
689 715 5.688807 CATGTACTTCCTCCATCTGGAAAT 58.311 41.667 0.00 0.00 44.91 2.17
690 716 6.688922 GCATGTACTTCCTCCATCTGGAAATA 60.689 42.308 0.00 0.00 44.91 1.40
691 717 6.235231 TGTACTTCCTCCATCTGGAAATAC 57.765 41.667 7.05 7.05 44.91 1.89
692 718 5.964477 TGTACTTCCTCCATCTGGAAATACT 59.036 40.000 12.97 0.00 42.98 2.12
693 719 5.622346 ACTTCCTCCATCTGGAAATACTC 57.378 43.478 0.00 0.00 44.91 2.59
694 720 4.100189 ACTTCCTCCATCTGGAAATACTCG 59.900 45.833 0.00 0.00 44.91 4.18
695 721 3.643237 TCCTCCATCTGGAAATACTCGT 58.357 45.455 0.00 0.00 44.91 4.18
696 722 3.637229 TCCTCCATCTGGAAATACTCGTC 59.363 47.826 0.00 0.00 44.91 4.20
697 723 3.384789 CCTCCATCTGGAAATACTCGTCA 59.615 47.826 0.00 0.00 44.91 4.35
698 724 4.039730 CCTCCATCTGGAAATACTCGTCAT 59.960 45.833 0.00 0.00 44.91 3.06
699 725 5.201713 TCCATCTGGAAATACTCGTCATC 57.798 43.478 0.00 0.00 42.18 2.92
700 726 4.649218 TCCATCTGGAAATACTCGTCATCA 59.351 41.667 0.00 0.00 42.18 3.07
701 727 5.128663 TCCATCTGGAAATACTCGTCATCAA 59.871 40.000 0.00 0.00 42.18 2.57
702 728 5.817296 CCATCTGGAAATACTCGTCATCAAA 59.183 40.000 0.00 0.00 37.39 2.69
703 729 6.316140 CCATCTGGAAATACTCGTCATCAAAA 59.684 38.462 0.00 0.00 37.39 2.44
704 730 7.012704 CCATCTGGAAATACTCGTCATCAAAAT 59.987 37.037 0.00 0.00 37.39 1.82
705 731 9.045223 CATCTGGAAATACTCGTCATCAAAATA 57.955 33.333 0.00 0.00 0.00 1.40
706 732 8.648557 TCTGGAAATACTCGTCATCAAAATAG 57.351 34.615 0.00 0.00 0.00 1.73
707 733 8.474831 TCTGGAAATACTCGTCATCAAAATAGA 58.525 33.333 0.00 0.00 0.00 1.98
708 734 9.265901 CTGGAAATACTCGTCATCAAAATAGAT 57.734 33.333 0.00 0.00 0.00 1.98
749 775 6.910536 ACTCATTTTGATGACGAGTATTCC 57.089 37.500 0.00 0.00 35.24 3.01
750 776 5.520288 ACTCATTTTGATGACGAGTATTCCG 59.480 40.000 0.00 0.00 35.24 4.30
751 777 5.656480 TCATTTTGATGACGAGTATTCCGA 58.344 37.500 0.00 0.00 0.00 4.55
752 778 6.103330 TCATTTTGATGACGAGTATTCCGAA 58.897 36.000 0.00 0.00 0.00 4.30
753 779 5.773239 TTTTGATGACGAGTATTCCGAAC 57.227 39.130 0.00 0.00 0.00 3.95
754 780 3.060978 TGATGACGAGTATTCCGAACG 57.939 47.619 0.00 0.00 0.00 3.95
755 781 2.223409 TGATGACGAGTATTCCGAACGG 60.223 50.000 6.94 6.94 0.00 4.44
756 782 1.452110 TGACGAGTATTCCGAACGGA 58.548 50.000 12.04 12.04 43.52 4.69
757 783 1.399440 TGACGAGTATTCCGAACGGAG 59.601 52.381 15.34 6.26 46.06 4.63
758 784 0.737219 ACGAGTATTCCGAACGGAGG 59.263 55.000 15.34 5.75 46.06 4.30
759 785 0.030369 CGAGTATTCCGAACGGAGGG 59.970 60.000 15.34 0.73 46.06 4.30
760 786 1.396653 GAGTATTCCGAACGGAGGGA 58.603 55.000 15.34 2.49 46.06 4.20
1060 1136 4.959596 GCCCCATCTCGCTCGAGC 62.960 72.222 27.64 27.64 41.71 5.03
1166 1242 3.953775 CCCCGTCACCAACCTGCT 61.954 66.667 0.00 0.00 0.00 4.24
1569 1654 3.753434 CTGACGAGCCTCGCCACT 61.753 66.667 15.20 0.00 45.12 4.00
1800 1885 2.888863 GAGGTGCTCGGTCTCCTG 59.111 66.667 3.75 0.00 30.75 3.86
1835 1920 4.308458 CCGCCACGACCTGTCCAA 62.308 66.667 0.00 0.00 0.00 3.53
1842 1927 0.768622 ACGACCTGTCCAAAATCCCA 59.231 50.000 0.00 0.00 0.00 4.37
2031 2116 3.406682 CAAGATTGCCAAGAACGCC 57.593 52.632 0.00 0.00 0.00 5.68
2110 2195 9.895894 CAAATTTATCAGAATTTTGATTCAGCG 57.104 29.630 15.89 0.00 37.17 5.18
2211 2296 2.709213 AGCAGAGCTGGAAATGAAGAC 58.291 47.619 0.00 0.00 37.57 3.01
2303 2389 1.859080 GGGAGTCCGAATTCGAAATCG 59.141 52.381 28.76 25.03 43.02 3.34
2354 2440 4.465660 ACATCTGATCAAGTGTCTAGTGCT 59.534 41.667 6.78 0.00 0.00 4.40
2386 2472 5.884322 AGCTCCATTGCAAATGATCCTATA 58.116 37.500 1.71 0.00 34.99 1.31
2395 2481 9.664332 ATTGCAAATGATCCTATATCTGTCTAC 57.336 33.333 1.71 0.00 0.00 2.59
2558 2644 1.810755 GTAAGGGTGTGCTAACTTGGC 59.189 52.381 0.00 0.00 0.00 4.52
2570 2656 4.635765 TGCTAACTTGGCATGTACTTCATC 59.364 41.667 6.44 0.00 34.09 2.92
2571 2657 4.635765 GCTAACTTGGCATGTACTTCATCA 59.364 41.667 6.44 0.00 34.09 3.07
2572 2658 5.297776 GCTAACTTGGCATGTACTTCATCAT 59.702 40.000 6.44 0.00 34.09 2.45
2573 2659 6.483307 GCTAACTTGGCATGTACTTCATCATA 59.517 38.462 6.44 0.00 34.09 2.15
2574 2660 6.683974 AACTTGGCATGTACTTCATCATAC 57.316 37.500 6.44 0.00 34.09 2.39
2575 2661 5.744171 ACTTGGCATGTACTTCATCATACA 58.256 37.500 3.94 0.00 35.82 2.29
2576 2662 6.359804 ACTTGGCATGTACTTCATCATACAT 58.640 36.000 3.94 0.00 41.63 2.29
2577 2663 6.830324 ACTTGGCATGTACTTCATCATACATT 59.170 34.615 3.94 0.00 39.47 2.71
2578 2664 7.340232 ACTTGGCATGTACTTCATCATACATTT 59.660 33.333 3.94 0.00 39.47 2.32
2579 2665 7.030075 TGGCATGTACTTCATCATACATTTG 57.970 36.000 0.00 0.00 39.47 2.32
2602 2688 8.984891 TTGCTTCATATTTGACTTTATTGTGG 57.015 30.769 0.00 0.00 0.00 4.17
2643 2729 1.302192 GTGGTGCGTTTAGAGCCCA 60.302 57.895 0.00 0.00 34.29 5.36
2756 2842 1.451067 ACTCACGGAGGACTCGTTAG 58.549 55.000 5.98 0.00 38.94 2.34
2876 2962 8.642432 TGCTCTATAAACTGTATGAAGCTGTAT 58.358 33.333 0.00 0.00 0.00 2.29
3012 3098 7.548780 AGTGTGCAACTTTGATTACAATTTTGT 59.451 29.630 1.08 1.08 39.68 2.83
3024 3110 4.804608 ACAATTTTGTTCGACGATGACA 57.195 36.364 0.00 0.00 38.47 3.58
3026 3112 5.146460 ACAATTTTGTTCGACGATGACATG 58.854 37.500 0.00 0.00 38.47 3.21
3034 3120 6.893759 TGTTCGACGATGACATGTTAATTTT 58.106 32.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.722700 CAACTCCCAGGGCCACGG 62.723 72.222 6.18 5.52 0.00 4.94
10 11 4.722700 CCAACTCCCAGGGCCACG 62.723 72.222 6.18 0.00 0.00 4.94
11 12 3.580319 ACCAACTCCCAGGGCCAC 61.580 66.667 6.18 0.00 0.00 5.01
12 13 3.579302 CACCAACTCCCAGGGCCA 61.579 66.667 6.18 0.00 0.00 5.36
15 16 4.722700 CCGCACCAACTCCCAGGG 62.723 72.222 0.00 0.00 0.00 4.45
16 17 3.953775 ACCGCACCAACTCCCAGG 61.954 66.667 0.00 0.00 0.00 4.45
17 18 2.669569 CACCGCACCAACTCCCAG 60.670 66.667 0.00 0.00 0.00 4.45
18 19 4.263572 CCACCGCACCAACTCCCA 62.264 66.667 0.00 0.00 0.00 4.37
19 20 3.485346 TTCCACCGCACCAACTCCC 62.485 63.158 0.00 0.00 0.00 4.30
20 21 1.966451 CTTCCACCGCACCAACTCC 60.966 63.158 0.00 0.00 0.00 3.85
21 22 2.617274 GCTTCCACCGCACCAACTC 61.617 63.158 0.00 0.00 0.00 3.01
22 23 2.594592 GCTTCCACCGCACCAACT 60.595 61.111 0.00 0.00 0.00 3.16
23 24 4.025401 CGCTTCCACCGCACCAAC 62.025 66.667 0.00 0.00 0.00 3.77
30 31 3.726517 CAAGTGCCGCTTCCACCG 61.727 66.667 0.00 0.00 34.69 4.94
31 32 1.856265 CTTCAAGTGCCGCTTCCACC 61.856 60.000 0.00 0.00 34.69 4.61
32 33 1.576421 CTTCAAGTGCCGCTTCCAC 59.424 57.895 0.00 0.00 34.69 4.02
33 34 1.600636 CCTTCAAGTGCCGCTTCCA 60.601 57.895 0.00 0.00 34.69 3.53
34 35 1.302511 TCCTTCAAGTGCCGCTTCC 60.303 57.895 0.00 0.00 34.69 3.46
35 36 1.578206 GGTCCTTCAAGTGCCGCTTC 61.578 60.000 0.00 0.00 34.69 3.86
36 37 1.600916 GGTCCTTCAAGTGCCGCTT 60.601 57.895 0.00 0.00 38.08 4.68
37 38 2.032681 GGTCCTTCAAGTGCCGCT 59.967 61.111 0.00 0.00 0.00 5.52
38 39 3.056328 GGGTCCTTCAAGTGCCGC 61.056 66.667 0.00 0.00 0.00 6.53
39 40 2.742372 CGGGTCCTTCAAGTGCCG 60.742 66.667 0.00 0.00 0.00 5.69
40 41 2.359975 CCGGGTCCTTCAAGTGCC 60.360 66.667 0.00 0.00 0.00 5.01
41 42 3.056328 GCCGGGTCCTTCAAGTGC 61.056 66.667 2.18 0.00 0.00 4.40
42 43 2.742372 CGCCGGGTCCTTCAAGTG 60.742 66.667 2.18 0.00 0.00 3.16
43 44 3.239253 ACGCCGGGTCCTTCAAGT 61.239 61.111 2.18 0.00 0.00 3.16
44 45 2.742372 CACGCCGGGTCCTTCAAG 60.742 66.667 2.18 0.00 0.00 3.02
45 46 4.323477 CCACGCCGGGTCCTTCAA 62.323 66.667 2.18 0.00 0.00 2.69
74 75 2.558313 GCTTCCAAGTGCGTCTGC 59.442 61.111 0.00 0.00 43.20 4.26
75 76 2.856032 CGCTTCCAAGTGCGTCTG 59.144 61.111 0.00 0.00 46.09 3.51
132 133 1.623542 AATACACGGAGGAGGTGGCC 61.624 60.000 0.00 0.00 39.69 5.36
133 134 0.179081 GAATACACGGAGGAGGTGGC 60.179 60.000 0.00 0.00 39.69 5.01
134 135 1.486211 AGAATACACGGAGGAGGTGG 58.514 55.000 0.00 0.00 39.69 4.61
135 136 2.418746 CCAAGAATACACGGAGGAGGTG 60.419 54.545 0.00 0.00 41.15 4.00
136 137 1.831736 CCAAGAATACACGGAGGAGGT 59.168 52.381 0.00 0.00 0.00 3.85
137 138 2.101582 CTCCAAGAATACACGGAGGAGG 59.898 54.545 0.00 0.00 41.20 4.30
138 139 2.482142 GCTCCAAGAATACACGGAGGAG 60.482 54.545 6.44 0.00 44.40 3.69
139 140 1.480954 GCTCCAAGAATACACGGAGGA 59.519 52.381 6.44 0.00 44.40 3.71
140 141 1.482593 AGCTCCAAGAATACACGGAGG 59.517 52.381 6.44 0.00 44.40 4.30
141 142 2.093973 ACAGCTCCAAGAATACACGGAG 60.094 50.000 0.00 0.00 46.53 4.63
142 143 1.899814 ACAGCTCCAAGAATACACGGA 59.100 47.619 0.00 0.00 0.00 4.69
143 144 2.002586 CACAGCTCCAAGAATACACGG 58.997 52.381 0.00 0.00 0.00 4.94
144 145 2.002586 CCACAGCTCCAAGAATACACG 58.997 52.381 0.00 0.00 0.00 4.49
145 146 1.740025 GCCACAGCTCCAAGAATACAC 59.260 52.381 0.00 0.00 35.50 2.90
146 147 2.113860 GCCACAGCTCCAAGAATACA 57.886 50.000 0.00 0.00 35.50 2.29
158 159 1.748879 TAAATCGGCCAGCCACAGC 60.749 57.895 9.78 0.00 40.32 4.40
159 160 0.676466 TGTAAATCGGCCAGCCACAG 60.676 55.000 9.78 0.00 35.37 3.66
160 161 0.034574 ATGTAAATCGGCCAGCCACA 60.035 50.000 9.78 5.37 35.37 4.17
161 162 0.381801 CATGTAAATCGGCCAGCCAC 59.618 55.000 9.78 0.00 35.37 5.01
162 163 0.254462 TCATGTAAATCGGCCAGCCA 59.746 50.000 9.78 0.00 35.37 4.75
163 164 1.388547 TTCATGTAAATCGGCCAGCC 58.611 50.000 2.24 0.00 0.00 4.85
164 165 3.715628 ATTTCATGTAAATCGGCCAGC 57.284 42.857 2.24 0.00 32.00 4.85
165 166 7.382218 GGAATTAATTTCATGTAAATCGGCCAG 59.618 37.037 2.24 0.00 36.76 4.85
166 167 7.206687 GGAATTAATTTCATGTAAATCGGCCA 58.793 34.615 2.24 0.00 36.76 5.36
167 168 6.645003 GGGAATTAATTTCATGTAAATCGGCC 59.355 38.462 8.74 0.00 36.76 6.13
168 169 7.433680 AGGGAATTAATTTCATGTAAATCGGC 58.566 34.615 8.74 0.00 36.76 5.54
169 170 7.803189 CGAGGGAATTAATTTCATGTAAATCGG 59.197 37.037 8.74 0.00 36.76 4.18
170 171 7.803189 CCGAGGGAATTAATTTCATGTAAATCG 59.197 37.037 8.74 0.53 36.76 3.34
171 172 8.630037 ACCGAGGGAATTAATTTCATGTAAATC 58.370 33.333 8.74 0.00 36.76 2.17
172 173 8.533569 ACCGAGGGAATTAATTTCATGTAAAT 57.466 30.769 8.74 0.00 39.56 1.40
173 174 7.948034 ACCGAGGGAATTAATTTCATGTAAA 57.052 32.000 8.74 0.00 35.94 2.01
174 175 7.394923 ACAACCGAGGGAATTAATTTCATGTAA 59.605 33.333 8.74 0.00 35.94 2.41
175 176 6.887545 ACAACCGAGGGAATTAATTTCATGTA 59.112 34.615 8.74 0.00 35.94 2.29
176 177 5.714806 ACAACCGAGGGAATTAATTTCATGT 59.285 36.000 8.74 3.24 35.94 3.21
177 178 6.035843 CACAACCGAGGGAATTAATTTCATG 58.964 40.000 8.74 2.72 35.94 3.07
178 179 5.127031 CCACAACCGAGGGAATTAATTTCAT 59.873 40.000 8.74 0.56 35.94 2.57
179 180 4.461081 CCACAACCGAGGGAATTAATTTCA 59.539 41.667 8.74 0.00 35.94 2.69
180 181 4.461431 ACCACAACCGAGGGAATTAATTTC 59.539 41.667 1.43 0.00 0.00 2.17
181 182 4.219725 CACCACAACCGAGGGAATTAATTT 59.780 41.667 1.43 0.00 0.00 1.82
182 183 3.761752 CACCACAACCGAGGGAATTAATT 59.238 43.478 0.00 0.00 0.00 1.40
183 184 3.352648 CACCACAACCGAGGGAATTAAT 58.647 45.455 0.00 0.00 0.00 1.40
184 185 2.553466 CCACCACAACCGAGGGAATTAA 60.553 50.000 0.00 0.00 0.00 1.40
185 186 1.003812 CCACCACAACCGAGGGAATTA 59.996 52.381 0.00 0.00 0.00 1.40
186 187 0.251165 CCACCACAACCGAGGGAATT 60.251 55.000 0.00 0.00 0.00 2.17
187 188 1.378762 CCACCACAACCGAGGGAAT 59.621 57.895 0.00 0.00 0.00 3.01
188 189 2.833227 CCACCACAACCGAGGGAA 59.167 61.111 0.00 0.00 0.00 3.97
189 190 3.948719 GCCACCACAACCGAGGGA 61.949 66.667 0.00 0.00 0.00 4.20
190 191 3.783362 TTGCCACCACAACCGAGGG 62.783 63.158 0.00 0.00 0.00 4.30
191 192 1.178534 ATTTGCCACCACAACCGAGG 61.179 55.000 0.00 0.00 0.00 4.63
192 193 1.529226 TATTTGCCACCACAACCGAG 58.471 50.000 0.00 0.00 0.00 4.63
193 194 2.208132 ATATTTGCCACCACAACCGA 57.792 45.000 0.00 0.00 0.00 4.69
194 195 4.647424 ATTATATTTGCCACCACAACCG 57.353 40.909 0.00 0.00 0.00 4.44
195 196 6.127591 TGTGTATTATATTTGCCACCACAACC 60.128 38.462 0.00 0.00 0.00 3.77
196 197 6.857956 TGTGTATTATATTTGCCACCACAAC 58.142 36.000 0.00 0.00 0.00 3.32
197 198 7.652524 ATGTGTATTATATTTGCCACCACAA 57.347 32.000 0.00 0.00 34.41 3.33
198 199 8.753497 TTATGTGTATTATATTTGCCACCACA 57.247 30.769 0.00 0.00 35.11 4.17
199 200 9.840427 GATTATGTGTATTATATTTGCCACCAC 57.160 33.333 0.00 0.00 0.00 4.16
200 201 9.019656 GGATTATGTGTATTATATTTGCCACCA 57.980 33.333 0.00 0.00 0.00 4.17
201 202 9.019656 TGGATTATGTGTATTATATTTGCCACC 57.980 33.333 0.00 0.00 0.00 4.61
221 222 9.313118 CACGCTAGTGCATAATAATATGGATTA 57.687 33.333 2.40 0.00 41.20 1.75
222 223 8.201554 CACGCTAGTGCATAATAATATGGATT 57.798 34.615 2.40 0.00 41.20 3.01
223 224 7.776933 CACGCTAGTGCATAATAATATGGAT 57.223 36.000 2.40 0.00 41.20 3.41
239 240 4.514781 TCTATTTCACACACACGCTAGT 57.485 40.909 0.00 0.00 0.00 2.57
240 241 4.268644 CCATCTATTTCACACACACGCTAG 59.731 45.833 0.00 0.00 0.00 3.42
241 242 4.081917 TCCATCTATTTCACACACACGCTA 60.082 41.667 0.00 0.00 0.00 4.26
242 243 3.002791 CCATCTATTTCACACACACGCT 58.997 45.455 0.00 0.00 0.00 5.07
243 244 3.000041 TCCATCTATTTCACACACACGC 59.000 45.455 0.00 0.00 0.00 5.34
244 245 5.801350 AATCCATCTATTTCACACACACG 57.199 39.130 0.00 0.00 0.00 4.49
245 246 7.283127 ACCATAATCCATCTATTTCACACACAC 59.717 37.037 0.00 0.00 0.00 3.82
246 247 7.345691 ACCATAATCCATCTATTTCACACACA 58.654 34.615 0.00 0.00 0.00 3.72
247 248 7.041098 GGACCATAATCCATCTATTTCACACAC 60.041 40.741 0.00 0.00 38.77 3.82
248 249 6.998074 GGACCATAATCCATCTATTTCACACA 59.002 38.462 0.00 0.00 38.77 3.72
249 250 6.431234 GGGACCATAATCCATCTATTTCACAC 59.569 42.308 0.00 0.00 40.96 3.82
250 251 6.542821 GGGACCATAATCCATCTATTTCACA 58.457 40.000 0.00 0.00 40.96 3.58
251 252 5.643777 CGGGACCATAATCCATCTATTTCAC 59.356 44.000 0.00 0.00 40.96 3.18
252 253 5.309543 ACGGGACCATAATCCATCTATTTCA 59.690 40.000 0.00 0.00 40.96 2.69
253 254 5.805728 ACGGGACCATAATCCATCTATTTC 58.194 41.667 0.00 0.00 40.96 2.17
254 255 5.843019 ACGGGACCATAATCCATCTATTT 57.157 39.130 0.00 0.00 40.96 1.40
255 256 6.295719 GTACGGGACCATAATCCATCTATT 57.704 41.667 0.00 0.00 40.96 1.73
256 257 5.934402 GTACGGGACCATAATCCATCTAT 57.066 43.478 0.00 0.00 40.96 1.98
270 271 5.997384 ATCCATCTTATTAGGTACGGGAC 57.003 43.478 0.00 0.00 0.00 4.46
271 272 7.123697 CACATATCCATCTTATTAGGTACGGGA 59.876 40.741 0.00 0.00 0.00 5.14
272 273 7.093465 ACACATATCCATCTTATTAGGTACGGG 60.093 40.741 0.00 0.00 0.00 5.28
273 274 7.759886 CACACATATCCATCTTATTAGGTACGG 59.240 40.741 0.00 0.00 0.00 4.02
274 275 8.304596 ACACACATATCCATCTTATTAGGTACG 58.695 37.037 0.00 0.00 0.00 3.67
275 276 9.424319 CACACACATATCCATCTTATTAGGTAC 57.576 37.037 0.00 0.00 0.00 3.34
276 277 9.154632 ACACACACATATCCATCTTATTAGGTA 57.845 33.333 0.00 0.00 0.00 3.08
277 278 7.933577 CACACACACATATCCATCTTATTAGGT 59.066 37.037 0.00 0.00 0.00 3.08
278 279 7.933577 ACACACACACATATCCATCTTATTAGG 59.066 37.037 0.00 0.00 0.00 2.69
279 280 8.893219 ACACACACACATATCCATCTTATTAG 57.107 34.615 0.00 0.00 0.00 1.73
281 282 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
282 283 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
283 284 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
284 285 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
285 286 6.381133 TCTCTAACACACACACATATCCATCT 59.619 38.462 0.00 0.00 0.00 2.90
286 287 6.573434 TCTCTAACACACACACATATCCATC 58.427 40.000 0.00 0.00 0.00 3.51
287 288 6.381133 TCTCTCTAACACACACACATATCCAT 59.619 38.462 0.00 0.00 0.00 3.41
288 289 5.714806 TCTCTCTAACACACACACATATCCA 59.285 40.000 0.00 0.00 0.00 3.41
289 290 6.095580 TCTCTCTCTAACACACACACATATCC 59.904 42.308 0.00 0.00 0.00 2.59
290 291 7.066404 TCTCTCTCTCTAACACACACACATATC 59.934 40.741 0.00 0.00 0.00 1.63
291 292 6.887002 TCTCTCTCTCTAACACACACACATAT 59.113 38.462 0.00 0.00 0.00 1.78
292 293 6.238648 TCTCTCTCTCTAACACACACACATA 58.761 40.000 0.00 0.00 0.00 2.29
293 294 5.073428 TCTCTCTCTCTAACACACACACAT 58.927 41.667 0.00 0.00 0.00 3.21
294 295 4.461198 TCTCTCTCTCTAACACACACACA 58.539 43.478 0.00 0.00 0.00 3.72
295 296 4.757657 TCTCTCTCTCTCTAACACACACAC 59.242 45.833 0.00 0.00 0.00 3.82
296 297 4.974399 TCTCTCTCTCTCTAACACACACA 58.026 43.478 0.00 0.00 0.00 3.72
297 298 4.394920 CCTCTCTCTCTCTCTAACACACAC 59.605 50.000 0.00 0.00 0.00 3.82
298 299 4.566697 CCCTCTCTCTCTCTCTAACACACA 60.567 50.000 0.00 0.00 0.00 3.72
299 300 3.945285 CCCTCTCTCTCTCTCTAACACAC 59.055 52.174 0.00 0.00 0.00 3.82
300 301 3.847184 TCCCTCTCTCTCTCTCTAACACA 59.153 47.826 0.00 0.00 0.00 3.72
301 302 4.163458 TCTCCCTCTCTCTCTCTCTAACAC 59.837 50.000 0.00 0.00 0.00 3.32
302 303 4.367166 TCTCCCTCTCTCTCTCTCTAACA 58.633 47.826 0.00 0.00 0.00 2.41
303 304 4.202367 CCTCTCCCTCTCTCTCTCTCTAAC 60.202 54.167 0.00 0.00 0.00 2.34
304 305 3.973973 CCTCTCCCTCTCTCTCTCTCTAA 59.026 52.174 0.00 0.00 0.00 2.10
305 306 3.587498 CCTCTCCCTCTCTCTCTCTCTA 58.413 54.545 0.00 0.00 0.00 2.43
306 307 2.412591 CCTCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
307 308 1.421646 CCCTCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
308 309 1.522900 CCCTCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
309 310 0.478507 CCCCTCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
310 311 0.998945 CCCCCTCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
311 312 0.996762 TCCCCCTCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
312 313 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
313 314 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
314 315 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
315 316 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
316 317 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
317 318 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
318 319 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
319 320 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
320 321 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
321 322 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
322 323 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
323 324 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
324 325 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
325 326 0.336737 TTCCTCACTCTCTCTCCCCC 59.663 60.000 0.00 0.00 0.00 5.40
326 327 1.286553 TCTTCCTCACTCTCTCTCCCC 59.713 57.143 0.00 0.00 0.00 4.81
327 328 2.818751 TCTTCCTCACTCTCTCTCCC 57.181 55.000 0.00 0.00 0.00 4.30
328 329 3.023832 CCTTCTTCCTCACTCTCTCTCC 58.976 54.545 0.00 0.00 0.00 3.71
329 330 3.947834 CTCCTTCTTCCTCACTCTCTCTC 59.052 52.174 0.00 0.00 0.00 3.20
330 331 3.309121 CCTCCTTCTTCCTCACTCTCTCT 60.309 52.174 0.00 0.00 0.00 3.10
331 332 3.023832 CCTCCTTCTTCCTCACTCTCTC 58.976 54.545 0.00 0.00 0.00 3.20
332 333 2.652348 TCCTCCTTCTTCCTCACTCTCT 59.348 50.000 0.00 0.00 0.00 3.10
333 334 3.094484 TCCTCCTTCTTCCTCACTCTC 57.906 52.381 0.00 0.00 0.00 3.20
334 335 3.181412 ACTTCCTCCTTCTTCCTCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
335 336 3.056179 CACTTCCTCCTTCTTCCTCACTC 60.056 52.174 0.00 0.00 0.00 3.51
336 337 2.903135 CACTTCCTCCTTCTTCCTCACT 59.097 50.000 0.00 0.00 0.00 3.41
337 338 2.635427 ACACTTCCTCCTTCTTCCTCAC 59.365 50.000 0.00 0.00 0.00 3.51
338 339 2.634940 CACACTTCCTCCTTCTTCCTCA 59.365 50.000 0.00 0.00 0.00 3.86
339 340 2.635427 ACACACTTCCTCCTTCTTCCTC 59.365 50.000 0.00 0.00 0.00 3.71
340 341 2.370189 CACACACTTCCTCCTTCTTCCT 59.630 50.000 0.00 0.00 0.00 3.36
341 342 2.104963 ACACACACTTCCTCCTTCTTCC 59.895 50.000 0.00 0.00 0.00 3.46
342 343 3.134458 CACACACACTTCCTCCTTCTTC 58.866 50.000 0.00 0.00 0.00 2.87
343 344 2.505819 ACACACACACTTCCTCCTTCTT 59.494 45.455 0.00 0.00 0.00 2.52
344 345 2.119495 ACACACACACTTCCTCCTTCT 58.881 47.619 0.00 0.00 0.00 2.85
345 346 2.158957 TCACACACACACTTCCTCCTTC 60.159 50.000 0.00 0.00 0.00 3.46
346 347 1.837439 TCACACACACACTTCCTCCTT 59.163 47.619 0.00 0.00 0.00 3.36
347 348 1.414181 CTCACACACACACTTCCTCCT 59.586 52.381 0.00 0.00 0.00 3.69
348 349 1.541233 CCTCACACACACACTTCCTCC 60.541 57.143 0.00 0.00 0.00 4.30
349 350 1.412710 TCCTCACACACACACTTCCTC 59.587 52.381 0.00 0.00 0.00 3.71
350 351 1.496060 TCCTCACACACACACTTCCT 58.504 50.000 0.00 0.00 0.00 3.36
351 352 2.550830 ATCCTCACACACACACTTCC 57.449 50.000 0.00 0.00 0.00 3.46
352 353 3.876914 TCAAATCCTCACACACACACTTC 59.123 43.478 0.00 0.00 0.00 3.01
353 354 3.884895 TCAAATCCTCACACACACACTT 58.115 40.909 0.00 0.00 0.00 3.16
354 355 3.558931 TCAAATCCTCACACACACACT 57.441 42.857 0.00 0.00 0.00 3.55
355 356 3.814842 TCATCAAATCCTCACACACACAC 59.185 43.478 0.00 0.00 0.00 3.82
356 357 4.084011 TCATCAAATCCTCACACACACA 57.916 40.909 0.00 0.00 0.00 3.72
357 358 6.741992 TTATCATCAAATCCTCACACACAC 57.258 37.500 0.00 0.00 0.00 3.82
358 359 7.757941 TTTTATCATCAAATCCTCACACACA 57.242 32.000 0.00 0.00 0.00 3.72
380 381 4.709397 TCAAGTGACATTGGTGACCTTTTT 59.291 37.500 2.11 0.00 30.71 1.94
381 382 4.277476 TCAAGTGACATTGGTGACCTTTT 58.723 39.130 2.11 0.00 30.71 2.27
382 383 3.897239 TCAAGTGACATTGGTGACCTTT 58.103 40.909 2.11 0.00 30.71 3.11
383 384 3.576078 TCAAGTGACATTGGTGACCTT 57.424 42.857 2.11 0.00 30.71 3.50
384 385 3.795688 ATCAAGTGACATTGGTGACCT 57.204 42.857 2.11 0.00 30.71 3.85
385 386 4.943705 ACATATCAAGTGACATTGGTGACC 59.056 41.667 0.00 0.00 30.71 4.02
386 387 7.495606 TCATACATATCAAGTGACATTGGTGAC 59.504 37.037 0.00 0.00 0.00 3.67
387 388 7.563906 TCATACATATCAAGTGACATTGGTGA 58.436 34.615 0.00 0.00 0.00 4.02
388 389 7.712205 TCTCATACATATCAAGTGACATTGGTG 59.288 37.037 0.00 0.00 0.00 4.17
389 390 7.795047 TCTCATACATATCAAGTGACATTGGT 58.205 34.615 0.00 0.00 0.00 3.67
390 391 8.667076 TTCTCATACATATCAAGTGACATTGG 57.333 34.615 0.00 0.00 0.00 3.16
421 422 8.947115 GCCACATTAACTTTAAGAGTTCAGTAT 58.053 33.333 0.00 0.00 45.40 2.12
422 423 7.389607 GGCCACATTAACTTTAAGAGTTCAGTA 59.610 37.037 0.00 0.00 45.40 2.74
423 424 6.206829 GGCCACATTAACTTTAAGAGTTCAGT 59.793 38.462 0.00 3.25 45.40 3.41
424 425 6.349363 GGGCCACATTAACTTTAAGAGTTCAG 60.349 42.308 4.39 2.82 45.40 3.02
425 426 5.475564 GGGCCACATTAACTTTAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
426 427 5.105877 GGGGCCACATTAACTTTAAGAGTTC 60.106 44.000 4.39 0.00 45.40 3.01
428 429 4.341487 GGGGCCACATTAACTTTAAGAGT 58.659 43.478 4.39 0.00 41.47 3.24
429 430 3.377172 CGGGGCCACATTAACTTTAAGAG 59.623 47.826 5.46 0.00 0.00 2.85
430 431 3.244981 ACGGGGCCACATTAACTTTAAGA 60.245 43.478 5.46 0.00 0.00 2.10
431 432 3.086282 ACGGGGCCACATTAACTTTAAG 58.914 45.455 5.46 0.00 0.00 1.85
432 433 3.157750 ACGGGGCCACATTAACTTTAA 57.842 42.857 5.46 0.00 0.00 1.52
433 434 2.883122 ACGGGGCCACATTAACTTTA 57.117 45.000 5.46 0.00 0.00 1.85
434 435 2.003937 AACGGGGCCACATTAACTTT 57.996 45.000 5.46 0.00 0.00 2.66
435 436 2.224818 TGTAACGGGGCCACATTAACTT 60.225 45.455 5.46 0.00 0.00 2.66
436 437 1.351683 TGTAACGGGGCCACATTAACT 59.648 47.619 5.46 0.00 0.00 2.24
437 438 1.823797 TGTAACGGGGCCACATTAAC 58.176 50.000 5.46 0.00 0.00 2.01
438 439 2.161030 GTTGTAACGGGGCCACATTAA 58.839 47.619 5.46 0.00 0.00 1.40
439 440 1.823797 GTTGTAACGGGGCCACATTA 58.176 50.000 5.46 0.00 0.00 1.90
440 441 2.648593 GTTGTAACGGGGCCACATT 58.351 52.632 5.46 0.00 0.00 2.71
441 442 4.408378 GTTGTAACGGGGCCACAT 57.592 55.556 5.46 0.00 0.00 3.21
459 460 1.591619 GTATTAGAAGAACGCCCGTGC 59.408 52.381 0.00 0.00 0.00 5.34
460 461 3.160777 AGTATTAGAAGAACGCCCGTG 57.839 47.619 0.00 0.00 0.00 4.94
461 462 3.696051 TGTAGTATTAGAAGAACGCCCGT 59.304 43.478 0.00 0.00 0.00 5.28
462 463 4.297299 TGTAGTATTAGAAGAACGCCCG 57.703 45.455 0.00 0.00 0.00 6.13
463 464 8.652810 TTTAATGTAGTATTAGAAGAACGCCC 57.347 34.615 0.00 0.00 0.00 6.13
493 494 7.229707 TGCAGTTTGTGTAATGGTTTACTATGT 59.770 33.333 0.00 0.00 38.81 2.29
498 499 6.270064 ACTTGCAGTTTGTGTAATGGTTTAC 58.730 36.000 0.00 0.00 38.56 2.01
505 506 6.037830 ACTCGTTTACTTGCAGTTTGTGTAAT 59.962 34.615 0.00 0.00 29.44 1.89
511 512 7.431084 ACATTTTACTCGTTTACTTGCAGTTTG 59.569 33.333 0.00 0.00 0.00 2.93
526 527 8.251750 TGAGTATCTTTTGGACATTTTACTCG 57.748 34.615 0.00 0.00 35.74 4.18
537 538 8.102676 TGATCATTCAGTTGAGTATCTTTTGGA 58.897 33.333 0.00 0.00 34.92 3.53
561 562 5.865013 TGTAAGATGAACGCGTATCTTTTGA 59.135 36.000 31.32 17.66 42.12 2.69
574 575 5.500931 GCATCGCAGTAACTGTAAGATGAAC 60.501 44.000 17.91 4.29 39.59 3.18
611 612 4.912744 AGATCCTAATTGCATCCTCTTCCT 59.087 41.667 0.00 0.00 0.00 3.36
621 647 5.663456 GATTTTTGGCAGATCCTAATTGCA 58.337 37.500 6.27 0.00 39.54 4.08
658 684 2.461110 GGAAGTACATGCGTGGCGG 61.461 63.158 11.36 0.00 0.00 6.13
670 696 5.302059 CGAGTATTTCCAGATGGAGGAAGTA 59.698 44.000 1.13 0.00 46.36 2.24
671 697 4.100189 CGAGTATTTCCAGATGGAGGAAGT 59.900 45.833 1.13 0.00 46.36 3.01
672 698 4.100189 ACGAGTATTTCCAGATGGAGGAAG 59.900 45.833 1.13 0.00 46.36 3.46
673 699 4.030913 ACGAGTATTTCCAGATGGAGGAA 58.969 43.478 1.13 0.00 46.36 3.36
674 700 3.637229 GACGAGTATTTCCAGATGGAGGA 59.363 47.826 1.13 0.00 46.36 3.71
675 701 3.384789 TGACGAGTATTTCCAGATGGAGG 59.615 47.826 1.13 0.00 46.36 4.30
676 702 4.655762 TGACGAGTATTTCCAGATGGAG 57.344 45.455 1.13 0.00 46.36 3.86
677 703 4.649218 TGATGACGAGTATTTCCAGATGGA 59.351 41.667 0.00 0.00 43.73 3.41
678 704 4.948847 TGATGACGAGTATTTCCAGATGG 58.051 43.478 0.00 0.00 0.00 3.51
679 705 6.908870 TTTGATGACGAGTATTTCCAGATG 57.091 37.500 0.00 0.00 0.00 2.90
680 706 9.265901 CTATTTTGATGACGAGTATTTCCAGAT 57.734 33.333 0.00 0.00 0.00 2.90
681 707 8.474831 TCTATTTTGATGACGAGTATTTCCAGA 58.525 33.333 0.00 0.00 0.00 3.86
682 708 8.648557 TCTATTTTGATGACGAGTATTTCCAG 57.351 34.615 0.00 0.00 0.00 3.86
723 749 8.879759 GGAATACTCGTCATCAAAATGAGTAAA 58.120 33.333 8.73 0.00 44.31 2.01
724 750 7.222031 CGGAATACTCGTCATCAAAATGAGTAA 59.778 37.037 8.73 0.00 44.31 2.24
725 751 6.695713 CGGAATACTCGTCATCAAAATGAGTA 59.304 38.462 7.45 7.45 44.89 2.59
726 752 5.520288 CGGAATACTCGTCATCAAAATGAGT 59.480 40.000 3.72 3.72 42.53 3.41
727 753 5.748630 TCGGAATACTCGTCATCAAAATGAG 59.251 40.000 0.00 0.00 42.53 2.90
728 754 5.656480 TCGGAATACTCGTCATCAAAATGA 58.344 37.500 0.00 0.00 39.63 2.57
729 755 5.966636 TCGGAATACTCGTCATCAAAATG 57.033 39.130 0.00 0.00 0.00 2.32
730 756 5.005394 CGTTCGGAATACTCGTCATCAAAAT 59.995 40.000 0.00 0.00 0.00 1.82
731 757 4.325204 CGTTCGGAATACTCGTCATCAAAA 59.675 41.667 0.00 0.00 0.00 2.44
732 758 3.855379 CGTTCGGAATACTCGTCATCAAA 59.145 43.478 0.00 0.00 0.00 2.69
733 759 3.431856 CGTTCGGAATACTCGTCATCAA 58.568 45.455 0.00 0.00 0.00 2.57
734 760 2.223409 CCGTTCGGAATACTCGTCATCA 60.223 50.000 5.19 0.00 0.00 3.07
735 761 2.032550 TCCGTTCGGAATACTCGTCATC 59.967 50.000 11.66 0.00 0.00 2.92
736 762 2.019249 TCCGTTCGGAATACTCGTCAT 58.981 47.619 11.66 0.00 0.00 3.06
737 763 1.399440 CTCCGTTCGGAATACTCGTCA 59.601 52.381 14.79 0.00 33.41 4.35
738 764 1.268437 CCTCCGTTCGGAATACTCGTC 60.268 57.143 14.79 0.00 33.41 4.20
739 765 0.737219 CCTCCGTTCGGAATACTCGT 59.263 55.000 14.79 0.00 33.41 4.18
740 766 0.030369 CCCTCCGTTCGGAATACTCG 59.970 60.000 14.79 2.64 33.41 4.18
741 767 1.337387 CTCCCTCCGTTCGGAATACTC 59.663 57.143 14.79 0.00 33.41 2.59
742 768 1.341778 ACTCCCTCCGTTCGGAATACT 60.342 52.381 14.79 0.00 33.41 2.12
743 769 1.109609 ACTCCCTCCGTTCGGAATAC 58.890 55.000 14.79 0.00 33.41 1.89
744 770 2.301346 GTACTCCCTCCGTTCGGAATA 58.699 52.381 14.79 3.14 33.41 1.75
745 771 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
746 772 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
747 773 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
748 774 1.746615 TCGTACTCCCTCCGTTCGG 60.747 63.158 4.74 4.74 0.00 4.30
749 775 1.427020 GTCGTACTCCCTCCGTTCG 59.573 63.158 0.00 0.00 0.00 3.95
750 776 1.021390 TCGTCGTACTCCCTCCGTTC 61.021 60.000 0.00 0.00 0.00 3.95
751 777 1.003355 TCGTCGTACTCCCTCCGTT 60.003 57.895 0.00 0.00 0.00 4.44
752 778 1.449246 CTCGTCGTACTCCCTCCGT 60.449 63.158 0.00 0.00 0.00 4.69
753 779 0.532417 ATCTCGTCGTACTCCCTCCG 60.532 60.000 0.00 0.00 0.00 4.63
754 780 0.945813 CATCTCGTCGTACTCCCTCC 59.054 60.000 0.00 0.00 0.00 4.30
755 781 0.945813 CCATCTCGTCGTACTCCCTC 59.054 60.000 0.00 0.00 0.00 4.30
756 782 0.545171 TCCATCTCGTCGTACTCCCT 59.455 55.000 0.00 0.00 0.00 4.20
757 783 1.267261 CATCCATCTCGTCGTACTCCC 59.733 57.143 0.00 0.00 0.00 4.30
758 784 1.267261 CCATCCATCTCGTCGTACTCC 59.733 57.143 0.00 0.00 0.00 3.85
759 785 2.219458 TCCATCCATCTCGTCGTACTC 58.781 52.381 0.00 0.00 0.00 2.59
760 786 2.343484 TCCATCCATCTCGTCGTACT 57.657 50.000 0.00 0.00 0.00 2.73
815 856 1.831736 ACCATCCGGTGAACCTAAGAG 59.168 52.381 0.00 0.00 46.79 2.85
847 892 1.227674 GATGATGTGGGGGAGCGAC 60.228 63.158 0.00 0.00 0.00 5.19
1143 1219 3.494254 TTGGTGACGGGGCAGGTT 61.494 61.111 0.00 0.00 0.00 3.50
1292 1377 1.074423 AAGACGGAGGAGGACGACA 59.926 57.895 0.00 0.00 0.00 4.35
1422 1507 0.185175 TGAGATACAGGAGCGCCCTA 59.815 55.000 15.82 3.85 45.60 3.53
1569 1654 2.477176 GCACTTGTTGACGCCCACA 61.477 57.895 0.00 0.00 0.00 4.17
1835 1920 0.394352 GGCCACGATGTCTGGGATTT 60.394 55.000 0.00 0.00 0.00 2.17
1842 1927 3.649277 GAGCACGGCCACGATGTCT 62.649 63.158 2.24 0.00 44.60 3.41
2031 2116 1.087771 GTGTCCGGGCTAATTCCACG 61.088 60.000 7.97 0.00 0.00 4.94
2303 2389 4.130118 ACTTGTGACATTTCAGACTGGAC 58.870 43.478 1.81 0.00 30.10 4.02
2354 2440 6.602803 TCATTTGCAATGGAGCTACTTGATAA 59.397 34.615 0.00 5.53 34.99 1.75
2386 2472 1.977854 TGGCACACAAGGTAGACAGAT 59.022 47.619 0.00 0.00 0.00 2.90
2395 2481 3.950397 TAGGAAACTATGGCACACAAGG 58.050 45.455 0.00 0.00 42.50 3.61
2558 2644 8.400186 TGAAGCAAATGTATGATGAAGTACATG 58.600 33.333 0.00 0.00 39.83 3.21
2576 2662 9.421806 CCACAATAAAGTCAAATATGAAGCAAA 57.578 29.630 0.00 0.00 37.30 3.68
2577 2663 8.584157 ACCACAATAAAGTCAAATATGAAGCAA 58.416 29.630 0.00 0.00 37.30 3.91
2578 2664 8.121305 ACCACAATAAAGTCAAATATGAAGCA 57.879 30.769 0.00 0.00 37.30 3.91
2579 2665 8.986477 AACCACAATAAAGTCAAATATGAAGC 57.014 30.769 0.00 0.00 37.30 3.86
2600 2686 8.637986 ACTTGATAAAAACTATTGCAGAAACCA 58.362 29.630 0.00 0.00 0.00 3.67
2602 2688 8.915654 CCACTTGATAAAAACTATTGCAGAAAC 58.084 33.333 0.00 0.00 0.00 2.78
2643 2729 5.047377 ACGTGGAAAAATTAGCACAATCCAT 60.047 36.000 0.00 0.00 37.76 3.41
2833 2919 7.992180 ATAGAGCAAAATTTAGCCAATTTCG 57.008 32.000 5.00 0.00 43.20 3.46
2876 2962 7.786046 TTAGACAGTTTATTCAGGACAGGTA 57.214 36.000 0.00 0.00 0.00 3.08
3012 3098 8.927721 TCTAAAAATTAACATGTCATCGTCGAA 58.072 29.630 0.00 0.00 0.00 3.71
3034 3120 6.636705 ACGTAGCACAAATTAGACCATCTAA 58.363 36.000 0.95 0.95 42.49 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.