Multiple sequence alignment - TraesCS7B01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G206500 chr7B 100.000 3491 0 0 1 3491 377812530 377816020 0.000000e+00 6447
1 TraesCS7B01G206500 chr7B 83.295 431 66 6 2561 2987 618763915 618763487 3.270000e-105 392
2 TraesCS7B01G206500 chr7B 73.778 450 84 24 2561 2992 618763487 618763920 2.810000e-31 147
3 TraesCS7B01G206500 chr7D 95.033 2597 84 24 1 2559 383269063 383271652 0.000000e+00 4039
4 TraesCS7B01G206500 chr7D 93.452 504 21 5 2988 3491 383271645 383272136 0.000000e+00 737
5 TraesCS7B01G206500 chr7D 82.517 429 71 4 2561 2987 607082556 607082130 1.180000e-99 374
6 TraesCS7B01G206500 chr7D 82.532 395 65 4 2597 2989 498224981 498224589 9.280000e-91 344
7 TraesCS7B01G206500 chr7A 93.562 2594 117 20 1 2562 432137633 432140208 0.000000e+00 3819
8 TraesCS7B01G206500 chr7A 90.818 501 19 7 2988 3488 432140198 432140671 0.000000e+00 645
9 TraesCS7B01G206500 chr5D 88.993 427 45 2 2562 2987 375467182 375467607 8.580000e-146 527
10 TraesCS7B01G206500 chr5D 82.195 410 66 7 2553 2959 417614276 417613871 2.580000e-91 346
11 TraesCS7B01G206500 chr3B 87.907 430 47 5 2560 2987 40247777 40248203 5.200000e-138 501
12 TraesCS7B01G206500 chr3B 84.941 425 57 6 2561 2981 737940098 737939677 1.160000e-114 424
13 TraesCS7B01G206500 chr4B 83.063 431 68 5 2561 2987 44658174 44658603 1.520000e-103 387
14 TraesCS7B01G206500 chr4B 82.831 431 69 5 2561 2987 44468935 44469364 7.070000e-102 381
15 TraesCS7B01G206500 chr2A 73.933 445 83 20 2561 2987 680084606 680085035 7.810000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G206500 chr7B 377812530 377816020 3490 False 6447 6447 100.0000 1 3491 1 chr7B.!!$F1 3490
1 TraesCS7B01G206500 chr7D 383269063 383272136 3073 False 2388 4039 94.2425 1 3491 2 chr7D.!!$F1 3490
2 TraesCS7B01G206500 chr7A 432137633 432140671 3038 False 2232 3819 92.1900 1 3488 2 chr7A.!!$F1 3487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 576 0.179045 GCCACCACATTAGATCGGCT 60.179 55.0 0.0 0.0 35.17 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 2599 0.463833 GCACCGGATACTTTCCCCTG 60.464 60.0 9.46 0.0 42.06 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 63 7.147602 ACCATAAGCCTAAACGTAAGGTAATCT 60.148 37.037 16.04 4.44 46.39 2.40
67 75 6.707161 ACGTAAGGTAATCTGCAGTTTAACAA 59.293 34.615 26.63 15.67 46.39 2.83
123 131 2.230660 GGTAGCAGCCTCAAAACAACT 58.769 47.619 0.00 0.00 0.00 3.16
156 164 6.192234 TCTCGTGTTATTGTCCTCTTAGAC 57.808 41.667 0.00 0.00 37.28 2.59
158 166 4.159135 TCGTGTTATTGTCCTCTTAGACCC 59.841 45.833 0.00 0.00 35.83 4.46
218 226 5.009110 CCGCCTATATACATCTCGACATGAT 59.991 44.000 7.73 0.00 0.00 2.45
219 227 6.204882 CCGCCTATATACATCTCGACATGATA 59.795 42.308 7.73 2.32 0.00 2.15
243 251 9.965902 ATAGTTCAGACAATTTTAGACCTTCAT 57.034 29.630 0.00 0.00 0.00 2.57
262 271 6.311445 CCTTCATCATAATCCCTCGTTATTCG 59.689 42.308 0.00 0.00 41.41 3.34
277 286 1.115930 ATTCGCGGACTGGCCTAGAT 61.116 55.000 6.13 0.00 0.00 1.98
300 309 0.180406 CCGAAATCCCCTGATCCGTT 59.820 55.000 0.00 0.00 0.00 4.44
337 346 1.760192 ATAGGTAGTCGAGGCGTGTT 58.240 50.000 0.00 0.00 0.00 3.32
371 380 2.044123 ACTCGGCAAAGGATCATTCC 57.956 50.000 0.00 0.00 42.96 3.01
397 409 3.577848 CCCACCATGAACTCATTTTTCCA 59.422 43.478 0.00 0.00 33.61 3.53
399 411 5.421693 CCCACCATGAACTCATTTTTCCATA 59.578 40.000 0.00 0.00 33.61 2.74
400 412 6.098695 CCCACCATGAACTCATTTTTCCATAT 59.901 38.462 0.00 0.00 33.61 1.78
401 413 7.287466 CCCACCATGAACTCATTTTTCCATATA 59.713 37.037 0.00 0.00 33.61 0.86
440 452 8.159447 CCTCTCATATATTCATTGGACAAAGGA 58.841 37.037 0.00 0.00 0.00 3.36
443 455 9.123902 CTCATATATTCATTGGACAAAGGAACA 57.876 33.333 0.00 0.00 41.06 3.18
471 483 2.733552 CGAGGAATAGCATTGGATGACG 59.266 50.000 0.00 0.00 0.00 4.35
524 536 3.490759 CGCACGTGTCCATGAGCC 61.491 66.667 18.38 0.00 31.55 4.70
562 574 1.138859 TGAGCCACCACATTAGATCGG 59.861 52.381 0.00 0.00 0.00 4.18
564 576 0.179045 GCCACCACATTAGATCGGCT 60.179 55.000 0.00 0.00 35.17 5.52
585 597 2.231478 TGACTCGAAAACTAGAGCTGGG 59.769 50.000 0.00 0.00 37.99 4.45
586 598 1.066787 ACTCGAAAACTAGAGCTGGGC 60.067 52.381 0.00 0.00 37.99 5.36
587 599 0.249398 TCGAAAACTAGAGCTGGGCC 59.751 55.000 0.00 0.00 0.00 5.80
588 600 0.250513 CGAAAACTAGAGCTGGGCCT 59.749 55.000 4.53 0.00 0.00 5.19
589 601 1.480954 CGAAAACTAGAGCTGGGCCTA 59.519 52.381 4.53 0.00 0.00 3.93
590 602 2.093658 CGAAAACTAGAGCTGGGCCTAA 60.094 50.000 4.53 0.00 0.00 2.69
591 603 3.618997 CGAAAACTAGAGCTGGGCCTAAA 60.619 47.826 4.53 0.00 0.00 1.85
592 604 4.527944 GAAAACTAGAGCTGGGCCTAAAT 58.472 43.478 4.53 0.00 0.00 1.40
593 605 3.567478 AACTAGAGCTGGGCCTAAATG 57.433 47.619 4.53 0.00 0.00 2.32
594 606 1.771255 ACTAGAGCTGGGCCTAAATGG 59.229 52.381 4.53 0.00 39.35 3.16
702 742 2.439507 ACCGGTTTGGCAGATCATCTAT 59.560 45.455 0.00 0.00 43.94 1.98
709 749 8.783093 CGGTTTGGCAGATCATCTATTATTTAA 58.217 33.333 0.00 0.00 0.00 1.52
830 872 3.507622 TGAGCGATCCTGATCATCGTAAT 59.492 43.478 16.25 5.56 44.17 1.89
1011 1053 2.046023 CCTTGCATGACCTCCGCA 60.046 61.111 0.00 0.00 0.00 5.69
1158 1200 2.574399 GTCGAGAGCAGTGGGACC 59.426 66.667 0.00 0.00 0.00 4.46
1231 1273 4.915099 CGGCTACCGTCCTTCTTCAAGG 62.915 59.091 0.00 0.00 43.80 3.61
1563 1605 2.432628 CCACTGTTCGCGACCTCC 60.433 66.667 9.15 0.00 0.00 4.30
1570 1612 4.710167 TCGCGACCTCCTCCGTGA 62.710 66.667 3.71 0.00 42.06 4.35
1579 1621 4.821589 CCTCCGTGAGCTTCCCGC 62.822 72.222 0.00 0.00 39.57 6.13
2256 2298 3.947132 CTGCTGCCACGACCTGGAG 62.947 68.421 0.00 0.00 43.95 3.86
2509 2551 1.579626 GGATGACGACGACGACGAC 60.580 63.158 25.15 19.21 42.66 4.34
2552 2594 1.227853 GGCACCGTGTTTGGTCTCT 60.228 57.895 0.00 0.00 41.38 3.10
2553 2595 0.818040 GGCACCGTGTTTGGTCTCTT 60.818 55.000 0.00 0.00 41.38 2.85
2554 2596 0.307760 GCACCGTGTTTGGTCTCTTG 59.692 55.000 0.00 0.00 41.38 3.02
2555 2597 1.663695 CACCGTGTTTGGTCTCTTGT 58.336 50.000 0.00 0.00 41.38 3.16
2556 2598 2.014128 CACCGTGTTTGGTCTCTTGTT 58.986 47.619 0.00 0.00 41.38 2.83
2557 2599 2.031683 CACCGTGTTTGGTCTCTTGTTC 59.968 50.000 0.00 0.00 41.38 3.18
2558 2600 2.285083 CCGTGTTTGGTCTCTTGTTCA 58.715 47.619 0.00 0.00 0.00 3.18
2559 2601 2.287915 CCGTGTTTGGTCTCTTGTTCAG 59.712 50.000 0.00 0.00 0.00 3.02
2560 2602 2.287915 CGTGTTTGGTCTCTTGTTCAGG 59.712 50.000 0.00 0.00 0.00 3.86
2561 2603 2.618709 GTGTTTGGTCTCTTGTTCAGGG 59.381 50.000 0.00 0.00 0.00 4.45
2562 2604 2.230660 GTTTGGTCTCTTGTTCAGGGG 58.769 52.381 0.00 0.00 0.00 4.79
2563 2605 1.814429 TTGGTCTCTTGTTCAGGGGA 58.186 50.000 0.00 0.00 0.00 4.81
2564 2606 1.814429 TGGTCTCTTGTTCAGGGGAA 58.186 50.000 0.00 0.00 0.00 3.97
2565 2607 2.131854 TGGTCTCTTGTTCAGGGGAAA 58.868 47.619 0.00 0.00 34.13 3.13
2566 2608 2.106511 TGGTCTCTTGTTCAGGGGAAAG 59.893 50.000 0.00 0.00 34.13 2.62
2567 2609 2.106684 GGTCTCTTGTTCAGGGGAAAGT 59.893 50.000 0.00 0.00 34.13 2.66
2568 2610 3.326880 GGTCTCTTGTTCAGGGGAAAGTA 59.673 47.826 0.00 0.00 34.13 2.24
2569 2611 4.019231 GGTCTCTTGTTCAGGGGAAAGTAT 60.019 45.833 0.00 0.00 34.13 2.12
2570 2612 5.179533 GTCTCTTGTTCAGGGGAAAGTATC 58.820 45.833 0.00 0.00 34.13 2.24
2579 2621 2.776659 GGAAAGTATCCGGTGCACC 58.223 57.895 26.78 26.78 38.79 5.01
2598 2640 3.788766 GCGCTTGTGGTGCTACCG 61.789 66.667 0.00 0.00 46.82 4.02
2599 2641 3.118454 CGCTTGTGGTGCTACCGG 61.118 66.667 0.00 0.00 42.58 5.28
2600 2642 2.032071 GCTTGTGGTGCTACCGGT 59.968 61.111 13.98 13.98 42.58 5.28
2601 2643 2.325082 GCTTGTGGTGCTACCGGTG 61.325 63.158 19.93 8.61 42.58 4.94
2602 2644 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
2603 2645 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
2616 2658 4.460683 GTGCACCGGACGCCCATA 62.461 66.667 9.46 0.00 0.00 2.74
2617 2659 4.155733 TGCACCGGACGCCCATAG 62.156 66.667 9.46 0.00 0.00 2.23
2631 2673 4.713854 GCCCATAGCGCATTTAAAAATG 57.286 40.909 11.47 10.43 46.55 2.32
2632 2674 4.119136 GCCCATAGCGCATTTAAAAATGT 58.881 39.130 11.47 1.07 45.77 2.71
2633 2675 4.570369 GCCCATAGCGCATTTAAAAATGTT 59.430 37.500 11.47 6.08 45.77 2.71
2634 2676 5.276820 GCCCATAGCGCATTTAAAAATGTTC 60.277 40.000 11.47 8.43 45.77 3.18
2635 2677 5.809562 CCCATAGCGCATTTAAAAATGTTCA 59.190 36.000 11.47 1.97 45.77 3.18
2636 2678 6.312426 CCCATAGCGCATTTAAAAATGTTCAA 59.688 34.615 11.47 2.55 45.77 2.69
2637 2679 7.148507 CCCATAGCGCATTTAAAAATGTTCAAA 60.149 33.333 11.47 1.42 45.77 2.69
2638 2680 8.226448 CCATAGCGCATTTAAAAATGTTCAAAA 58.774 29.630 11.47 0.58 45.77 2.44
2639 2681 9.591404 CATAGCGCATTTAAAAATGTTCAAAAA 57.409 25.926 11.47 0.00 45.77 1.94
2675 2717 8.706492 AAATTAGCACATTCATACAACATTGG 57.294 30.769 0.00 0.00 0.00 3.16
2676 2718 6.832520 TTAGCACATTCATACAACATTGGT 57.167 33.333 0.00 0.00 0.00 3.67
2677 2719 5.726980 AGCACATTCATACAACATTGGTT 57.273 34.783 0.00 0.00 37.87 3.67
2678 2720 5.713025 AGCACATTCATACAACATTGGTTC 58.287 37.500 0.00 0.00 34.21 3.62
2679 2721 5.243507 AGCACATTCATACAACATTGGTTCA 59.756 36.000 0.00 0.00 34.21 3.18
2680 2722 6.071221 AGCACATTCATACAACATTGGTTCAT 60.071 34.615 0.00 0.00 34.21 2.57
2681 2723 6.035220 GCACATTCATACAACATTGGTTCATG 59.965 38.462 0.00 0.00 34.21 3.07
2682 2724 7.092079 CACATTCATACAACATTGGTTCATGT 58.908 34.615 0.00 0.00 34.21 3.21
2683 2725 7.599621 CACATTCATACAACATTGGTTCATGTT 59.400 33.333 0.00 0.00 41.20 2.71
2689 2731 3.815856 ACATTGGTTCATGTTGTTGCA 57.184 38.095 0.00 0.00 0.00 4.08
2690 2732 4.134379 ACATTGGTTCATGTTGTTGCAA 57.866 36.364 0.00 0.00 0.00 4.08
2691 2733 4.511527 ACATTGGTTCATGTTGTTGCAAA 58.488 34.783 0.00 0.00 0.00 3.68
2692 2734 4.940046 ACATTGGTTCATGTTGTTGCAAAA 59.060 33.333 0.00 0.00 0.00 2.44
2693 2735 5.589452 ACATTGGTTCATGTTGTTGCAAAAT 59.411 32.000 0.00 0.00 0.00 1.82
2694 2736 6.095160 ACATTGGTTCATGTTGTTGCAAAATT 59.905 30.769 0.00 0.00 0.00 1.82
2695 2737 6.506500 TTGGTTCATGTTGTTGCAAAATTT 57.493 29.167 0.00 0.00 0.00 1.82
2696 2738 6.116680 TGGTTCATGTTGTTGCAAAATTTC 57.883 33.333 0.00 0.00 0.00 2.17
2697 2739 5.645067 TGGTTCATGTTGTTGCAAAATTTCA 59.355 32.000 0.00 0.00 0.00 2.69
2698 2740 6.149973 TGGTTCATGTTGTTGCAAAATTTCAA 59.850 30.769 0.00 0.00 0.00 2.69
2699 2741 6.468637 GGTTCATGTTGTTGCAAAATTTCAAC 59.531 34.615 18.12 18.12 41.99 3.18
2700 2742 6.981762 TCATGTTGTTGCAAAATTTCAACT 57.018 29.167 22.68 11.23 42.11 3.16
2701 2743 7.375106 TCATGTTGTTGCAAAATTTCAACTT 57.625 28.000 22.68 16.77 42.11 2.66
2702 2744 7.462731 TCATGTTGTTGCAAAATTTCAACTTC 58.537 30.769 22.68 13.20 42.11 3.01
2703 2745 6.791887 TGTTGTTGCAAAATTTCAACTTCA 57.208 29.167 22.68 14.81 42.11 3.02
2704 2746 7.194607 TGTTGTTGCAAAATTTCAACTTCAA 57.805 28.000 22.68 8.44 42.11 2.69
2705 2747 7.642669 TGTTGTTGCAAAATTTCAACTTCAAA 58.357 26.923 22.68 6.94 42.11 2.69
2706 2748 8.295288 TGTTGTTGCAAAATTTCAACTTCAAAT 58.705 25.926 22.68 0.00 42.11 2.32
2707 2749 9.127006 GTTGTTGCAAAATTTCAACTTCAAATT 57.873 25.926 17.83 0.00 42.11 1.82
2708 2750 9.688592 TTGTTGCAAAATTTCAACTTCAAATTT 57.311 22.222 18.32 0.00 42.59 1.82
2709 2751 9.125906 TGTTGCAAAATTTCAACTTCAAATTTG 57.874 25.926 18.32 12.15 40.81 2.32
2710 2752 9.339492 GTTGCAAAATTTCAACTTCAAATTTGA 57.661 25.926 16.91 16.91 40.81 2.69
2711 2753 9.903682 TTGCAAAATTTCAACTTCAAATTTGAA 57.096 22.222 27.39 27.39 40.81 2.69
2718 2760 8.892887 TTTCAACTTCAAATTTGAAACATTGC 57.107 26.923 28.49 0.00 45.61 3.56
2719 2761 7.846644 TCAACTTCAAATTTGAAACATTGCT 57.153 28.000 28.49 10.20 45.61 3.91
2720 2762 7.908230 TCAACTTCAAATTTGAAACATTGCTC 58.092 30.769 28.49 0.00 45.61 4.26
2721 2763 6.515043 ACTTCAAATTTGAAACATTGCTCG 57.485 33.333 28.49 18.03 45.61 5.03
2722 2764 6.272318 ACTTCAAATTTGAAACATTGCTCGA 58.728 32.000 28.49 7.63 45.61 4.04
2723 2765 6.418819 ACTTCAAATTTGAAACATTGCTCGAG 59.581 34.615 28.49 17.19 45.61 4.04
2724 2766 5.221880 TCAAATTTGAAACATTGCTCGAGG 58.778 37.500 18.45 0.00 33.55 4.63
2725 2767 4.853924 AATTTGAAACATTGCTCGAGGT 57.146 36.364 15.58 0.00 0.00 3.85
2726 2768 5.957842 AATTTGAAACATTGCTCGAGGTA 57.042 34.783 15.58 0.00 0.00 3.08
2727 2769 6.515272 AATTTGAAACATTGCTCGAGGTAT 57.485 33.333 15.58 0.00 0.00 2.73
2728 2770 7.624360 AATTTGAAACATTGCTCGAGGTATA 57.376 32.000 15.58 0.00 0.00 1.47
2729 2771 7.624360 ATTTGAAACATTGCTCGAGGTATAA 57.376 32.000 15.58 0.00 0.00 0.98
2730 2772 7.441890 TTTGAAACATTGCTCGAGGTATAAA 57.558 32.000 15.58 3.75 0.00 1.40
2731 2773 7.441890 TTGAAACATTGCTCGAGGTATAAAA 57.558 32.000 15.58 0.00 0.00 1.52
2732 2774 7.441890 TGAAACATTGCTCGAGGTATAAAAA 57.558 32.000 15.58 0.00 0.00 1.94
2733 2775 8.050778 TGAAACATTGCTCGAGGTATAAAAAT 57.949 30.769 15.58 0.00 0.00 1.82
2734 2776 8.181573 TGAAACATTGCTCGAGGTATAAAAATC 58.818 33.333 15.58 0.00 0.00 2.17
2735 2777 7.624360 AACATTGCTCGAGGTATAAAAATCA 57.376 32.000 15.58 0.00 0.00 2.57
2736 2778 7.016361 ACATTGCTCGAGGTATAAAAATCAC 57.984 36.000 15.58 0.00 0.00 3.06
2737 2779 6.597672 ACATTGCTCGAGGTATAAAAATCACA 59.402 34.615 15.58 0.00 0.00 3.58
2738 2780 7.120579 ACATTGCTCGAGGTATAAAAATCACAA 59.879 33.333 15.58 5.21 0.00 3.33
2739 2781 7.441890 TTGCTCGAGGTATAAAAATCACAAA 57.558 32.000 15.58 0.00 0.00 2.83
2740 2782 7.441890 TGCTCGAGGTATAAAAATCACAAAA 57.558 32.000 15.58 0.00 0.00 2.44
2741 2783 8.050778 TGCTCGAGGTATAAAAATCACAAAAT 57.949 30.769 15.58 0.00 0.00 1.82
2742 2784 8.519526 TGCTCGAGGTATAAAAATCACAAAATT 58.480 29.630 15.58 0.00 0.00 1.82
2743 2785 8.798153 GCTCGAGGTATAAAAATCACAAAATTG 58.202 33.333 15.58 0.00 0.00 2.32
2744 2786 9.289303 CTCGAGGTATAAAAATCACAAAATTGG 57.711 33.333 3.91 0.00 0.00 3.16
2745 2787 7.757624 TCGAGGTATAAAAATCACAAAATTGGC 59.242 33.333 0.00 0.00 0.00 4.52
2746 2788 7.543868 CGAGGTATAAAAATCACAAAATTGGCA 59.456 33.333 0.00 0.00 0.00 4.92
2747 2789 8.546597 AGGTATAAAAATCACAAAATTGGCAC 57.453 30.769 0.00 0.00 0.00 5.01
2748 2790 8.374743 AGGTATAAAAATCACAAAATTGGCACT 58.625 29.630 0.00 0.00 0.00 4.40
2749 2791 8.442384 GGTATAAAAATCACAAAATTGGCACTG 58.558 33.333 0.00 0.00 0.00 3.66
2750 2792 9.202273 GTATAAAAATCACAAAATTGGCACTGA 57.798 29.630 0.00 0.00 0.00 3.41
2751 2793 6.998968 AAAAATCACAAAATTGGCACTGAA 57.001 29.167 0.00 0.00 0.00 3.02
2752 2794 7.571080 AAAAATCACAAAATTGGCACTGAAT 57.429 28.000 0.00 0.00 0.00 2.57
2753 2795 8.674263 AAAAATCACAAAATTGGCACTGAATA 57.326 26.923 0.00 0.00 0.00 1.75
2754 2796 7.894376 AAATCACAAAATTGGCACTGAATAG 57.106 32.000 0.00 0.00 0.00 1.73
2755 2797 6.594788 ATCACAAAATTGGCACTGAATAGT 57.405 33.333 0.00 0.00 37.75 2.12
2756 2798 7.701539 ATCACAAAATTGGCACTGAATAGTA 57.298 32.000 0.00 0.00 34.74 1.82
2757 2799 6.908825 TCACAAAATTGGCACTGAATAGTAC 58.091 36.000 0.00 0.00 34.74 2.73
2758 2800 6.488344 TCACAAAATTGGCACTGAATAGTACA 59.512 34.615 0.00 0.00 34.74 2.90
2759 2801 6.582295 CACAAAATTGGCACTGAATAGTACAC 59.418 38.462 0.00 0.00 34.74 2.90
2760 2802 6.264292 ACAAAATTGGCACTGAATAGTACACA 59.736 34.615 0.00 0.00 34.74 3.72
2761 2803 6.892658 AAATTGGCACTGAATAGTACACAA 57.107 33.333 0.00 0.00 34.74 3.33
2762 2804 6.500684 AATTGGCACTGAATAGTACACAAG 57.499 37.500 0.00 0.00 34.74 3.16
2763 2805 4.882842 TGGCACTGAATAGTACACAAGA 57.117 40.909 0.00 0.00 34.74 3.02
2764 2806 5.420725 TGGCACTGAATAGTACACAAGAT 57.579 39.130 0.00 0.00 34.74 2.40
2765 2807 6.538945 TGGCACTGAATAGTACACAAGATA 57.461 37.500 0.00 0.00 34.74 1.98
2766 2808 6.941857 TGGCACTGAATAGTACACAAGATAA 58.058 36.000 0.00 0.00 34.74 1.75
2767 2809 7.041721 TGGCACTGAATAGTACACAAGATAAG 58.958 38.462 0.00 0.00 34.74 1.73
2768 2810 7.042335 GGCACTGAATAGTACACAAGATAAGT 58.958 38.462 0.00 0.00 34.74 2.24
2769 2811 7.549488 GGCACTGAATAGTACACAAGATAAGTT 59.451 37.037 0.00 0.00 34.74 2.66
2770 2812 8.383619 GCACTGAATAGTACACAAGATAAGTTG 58.616 37.037 0.00 0.00 34.74 3.16
2771 2813 8.873830 CACTGAATAGTACACAAGATAAGTTGG 58.126 37.037 0.00 0.00 34.74 3.77
2772 2814 8.041323 ACTGAATAGTACACAAGATAAGTTGGG 58.959 37.037 0.00 0.00 36.84 4.12
2773 2815 6.821665 TGAATAGTACACAAGATAAGTTGGGC 59.178 38.462 0.00 0.00 33.81 5.36
2774 2816 4.910458 AGTACACAAGATAAGTTGGGCT 57.090 40.909 0.00 0.00 33.81 5.19
2775 2817 5.242795 AGTACACAAGATAAGTTGGGCTT 57.757 39.130 0.00 0.00 41.05 4.35
2776 2818 5.631119 AGTACACAAGATAAGTTGGGCTTT 58.369 37.500 0.00 0.00 38.57 3.51
2777 2819 6.775708 AGTACACAAGATAAGTTGGGCTTTA 58.224 36.000 0.00 0.00 38.57 1.85
2778 2820 6.879458 AGTACACAAGATAAGTTGGGCTTTAG 59.121 38.462 0.00 0.00 38.57 1.85
2779 2821 5.876357 ACACAAGATAAGTTGGGCTTTAGA 58.124 37.500 0.00 0.00 38.57 2.10
2780 2822 6.485171 ACACAAGATAAGTTGGGCTTTAGAT 58.515 36.000 0.00 0.00 38.57 1.98
2781 2823 6.948309 ACACAAGATAAGTTGGGCTTTAGATT 59.052 34.615 0.00 0.00 38.57 2.40
2782 2824 7.451566 ACACAAGATAAGTTGGGCTTTAGATTT 59.548 33.333 0.00 0.00 38.57 2.17
2783 2825 7.756722 CACAAGATAAGTTGGGCTTTAGATTTG 59.243 37.037 0.00 0.00 38.57 2.32
2784 2826 7.093771 ACAAGATAAGTTGGGCTTTAGATTTGG 60.094 37.037 0.00 0.00 38.57 3.28
2785 2827 3.961480 AAGTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 32.57 4.52
2786 2828 2.179427 AGTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
2793 2835 4.693283 GGCTTTAGATTTGGCCCATTAAC 58.307 43.478 0.00 0.00 38.77 2.01
2794 2836 4.161377 GGCTTTAGATTTGGCCCATTAACA 59.839 41.667 0.00 0.00 38.77 2.41
2795 2837 5.109210 GCTTTAGATTTGGCCCATTAACAC 58.891 41.667 0.00 0.00 0.00 3.32
2796 2838 5.337169 GCTTTAGATTTGGCCCATTAACACA 60.337 40.000 0.00 0.00 0.00 3.72
2797 2839 6.630188 GCTTTAGATTTGGCCCATTAACACAT 60.630 38.462 0.00 0.00 0.00 3.21
2798 2840 6.865834 TTAGATTTGGCCCATTAACACATT 57.134 33.333 0.00 0.00 0.00 2.71
2799 2841 5.088680 AGATTTGGCCCATTAACACATTG 57.911 39.130 0.00 0.00 0.00 2.82
2800 2842 4.776837 AGATTTGGCCCATTAACACATTGA 59.223 37.500 0.00 0.00 0.00 2.57
2801 2843 5.426185 AGATTTGGCCCATTAACACATTGAT 59.574 36.000 0.00 0.00 0.00 2.57
2802 2844 4.468765 TTGGCCCATTAACACATTGATG 57.531 40.909 0.00 0.00 32.80 3.07
2803 2845 2.168106 TGGCCCATTAACACATTGATGC 59.832 45.455 0.00 0.00 31.89 3.91
2804 2846 2.483538 GGCCCATTAACACATTGATGCC 60.484 50.000 0.00 0.00 31.89 4.40
2805 2847 2.168106 GCCCATTAACACATTGATGCCA 59.832 45.455 0.00 0.00 31.89 4.92
2806 2848 3.369261 GCCCATTAACACATTGATGCCAA 60.369 43.478 0.00 0.00 31.89 4.52
2807 2849 4.829968 CCCATTAACACATTGATGCCAAA 58.170 39.130 0.00 0.00 35.67 3.28
2808 2850 5.430007 CCCATTAACACATTGATGCCAAAT 58.570 37.500 0.00 0.00 35.67 2.32
2809 2851 5.881443 CCCATTAACACATTGATGCCAAATT 59.119 36.000 0.00 0.00 35.67 1.82
2810 2852 6.374894 CCCATTAACACATTGATGCCAAATTT 59.625 34.615 0.00 0.00 35.67 1.82
2811 2853 7.244898 CCATTAACACATTGATGCCAAATTTG 58.755 34.615 11.40 11.40 35.67 2.32
2812 2854 7.094720 CCATTAACACATTGATGCCAAATTTGT 60.095 33.333 16.73 0.00 35.67 2.83
2813 2855 7.798596 TTAACACATTGATGCCAAATTTGTT 57.201 28.000 16.73 10.54 36.90 2.83
2814 2856 8.893219 TTAACACATTGATGCCAAATTTGTTA 57.107 26.923 16.73 5.83 35.74 2.41
2815 2857 7.982761 AACACATTGATGCCAAATTTGTTAT 57.017 28.000 16.73 10.21 34.05 1.89
2816 2858 7.982761 ACACATTGATGCCAAATTTGTTATT 57.017 28.000 16.73 0.00 35.67 1.40
2817 2859 8.393671 ACACATTGATGCCAAATTTGTTATTT 57.606 26.923 16.73 0.00 35.67 1.40
2818 2860 8.848182 ACACATTGATGCCAAATTTGTTATTTT 58.152 25.926 16.73 0.00 35.67 1.82
2819 2861 9.680315 CACATTGATGCCAAATTTGTTATTTTT 57.320 25.926 16.73 0.00 35.67 1.94
2820 2862 9.680315 ACATTGATGCCAAATTTGTTATTTTTG 57.320 25.926 16.73 9.17 35.67 2.44
2821 2863 9.680315 CATTGATGCCAAATTTGTTATTTTTGT 57.320 25.926 16.73 0.00 35.67 2.83
2827 2869 9.770097 TGCCAAATTTGTTATTTTTGTATCTCA 57.230 25.926 16.73 0.00 0.00 3.27
2864 2906 9.421806 AGAATTTTGATATGAATTTTTGCGACA 57.578 25.926 0.00 0.00 0.00 4.35
2866 2908 9.810231 AATTTTGATATGAATTTTTGCGACAAC 57.190 25.926 0.00 0.00 0.00 3.32
2867 2909 7.936950 TTTGATATGAATTTTTGCGACAACA 57.063 28.000 0.00 0.00 0.00 3.33
2868 2910 8.531622 TTTGATATGAATTTTTGCGACAACAT 57.468 26.923 0.00 0.00 0.00 2.71
2869 2911 9.631452 TTTGATATGAATTTTTGCGACAACATA 57.369 25.926 0.00 0.00 0.00 2.29
2870 2912 8.839947 TGATATGAATTTTTGCGACAACATAG 57.160 30.769 0.00 0.00 0.00 2.23
2871 2913 7.914871 TGATATGAATTTTTGCGACAACATAGG 59.085 33.333 0.00 0.00 0.00 2.57
2872 2914 4.233789 TGAATTTTTGCGACAACATAGGC 58.766 39.130 0.00 0.00 0.00 3.93
2873 2915 2.715737 TTTTTGCGACAACATAGGCC 57.284 45.000 0.00 0.00 0.00 5.19
2874 2916 1.610363 TTTTGCGACAACATAGGCCA 58.390 45.000 5.01 0.00 0.00 5.36
2875 2917 1.610363 TTTGCGACAACATAGGCCAA 58.390 45.000 5.01 0.00 0.00 4.52
2876 2918 1.832883 TTGCGACAACATAGGCCAAT 58.167 45.000 5.01 0.00 0.00 3.16
2877 2919 2.700722 TGCGACAACATAGGCCAATA 57.299 45.000 5.01 0.00 0.00 1.90
2878 2920 3.207265 TGCGACAACATAGGCCAATAT 57.793 42.857 5.01 0.00 0.00 1.28
2879 2921 3.550820 TGCGACAACATAGGCCAATATT 58.449 40.909 5.01 0.00 0.00 1.28
2880 2922 3.951037 TGCGACAACATAGGCCAATATTT 59.049 39.130 5.01 0.00 0.00 1.40
2881 2923 4.400884 TGCGACAACATAGGCCAATATTTT 59.599 37.500 5.01 0.00 0.00 1.82
2882 2924 4.739716 GCGACAACATAGGCCAATATTTTG 59.260 41.667 5.01 7.40 31.87 2.44
2883 2925 4.739716 CGACAACATAGGCCAATATTTTGC 59.260 41.667 5.01 1.29 29.67 3.68
2884 2926 5.022282 ACAACATAGGCCAATATTTTGCC 57.978 39.130 15.15 15.15 29.67 4.52
2885 2927 4.469227 ACAACATAGGCCAATATTTTGCCA 59.531 37.500 21.91 11.91 33.83 4.92
2886 2928 5.046014 ACAACATAGGCCAATATTTTGCCAA 60.046 36.000 21.91 0.00 33.83 4.52
2887 2929 5.022282 ACATAGGCCAATATTTTGCCAAC 57.978 39.130 21.91 2.32 33.83 3.77
2888 2930 2.671130 AGGCCAATATTTTGCCAACG 57.329 45.000 21.91 0.00 33.83 4.10
2889 2931 1.899142 AGGCCAATATTTTGCCAACGT 59.101 42.857 21.91 4.60 33.83 3.99
2890 2932 1.999024 GGCCAATATTTTGCCAACGTG 59.001 47.619 17.20 0.00 32.53 4.49
2891 2933 1.393196 GCCAATATTTTGCCAACGTGC 59.607 47.619 0.00 0.00 0.00 5.34
2892 2934 2.930455 GCCAATATTTTGCCAACGTGCT 60.930 45.455 0.00 0.00 0.00 4.40
2893 2935 3.674682 GCCAATATTTTGCCAACGTGCTA 60.675 43.478 0.00 0.00 0.00 3.49
2894 2936 3.857093 CCAATATTTTGCCAACGTGCTAC 59.143 43.478 0.00 0.00 0.00 3.58
2895 2937 4.480541 CAATATTTTGCCAACGTGCTACA 58.519 39.130 0.00 0.00 0.00 2.74
2896 2938 4.981806 ATATTTTGCCAACGTGCTACAT 57.018 36.364 0.00 0.00 0.00 2.29
2897 2939 6.261859 CAATATTTTGCCAACGTGCTACATA 58.738 36.000 0.00 0.00 0.00 2.29
2898 2940 4.981806 ATTTTGCCAACGTGCTACATAT 57.018 36.364 0.00 0.00 0.00 1.78
2899 2941 4.775058 TTTTGCCAACGTGCTACATATT 57.225 36.364 0.00 0.00 0.00 1.28
2900 2942 4.775058 TTTGCCAACGTGCTACATATTT 57.225 36.364 0.00 0.00 0.00 1.40
2901 2943 4.775058 TTGCCAACGTGCTACATATTTT 57.225 36.364 0.00 0.00 0.00 1.82
2902 2944 4.349663 TGCCAACGTGCTACATATTTTC 57.650 40.909 0.00 0.00 0.00 2.29
2903 2945 4.006989 TGCCAACGTGCTACATATTTTCT 58.993 39.130 0.00 0.00 0.00 2.52
2904 2946 4.142708 TGCCAACGTGCTACATATTTTCTG 60.143 41.667 0.00 0.00 0.00 3.02
2905 2947 4.094294 GCCAACGTGCTACATATTTTCTGA 59.906 41.667 0.00 0.00 0.00 3.27
2906 2948 5.220854 GCCAACGTGCTACATATTTTCTGAT 60.221 40.000 0.00 0.00 0.00 2.90
2907 2949 6.677920 GCCAACGTGCTACATATTTTCTGATT 60.678 38.462 0.00 0.00 0.00 2.57
2908 2950 7.250569 CCAACGTGCTACATATTTTCTGATTT 58.749 34.615 0.00 0.00 0.00 2.17
2909 2951 7.754924 CCAACGTGCTACATATTTTCTGATTTT 59.245 33.333 0.00 0.00 0.00 1.82
2910 2952 9.128107 CAACGTGCTACATATTTTCTGATTTTT 57.872 29.630 0.00 0.00 0.00 1.94
2936 2978 9.601971 TTAAAACATTTTTAGATGTGCTACGAC 57.398 29.630 0.00 0.00 40.03 4.34
2937 2979 6.795098 AACATTTTTAGATGTGCTACGACA 57.205 33.333 0.00 0.00 40.03 4.35
2938 2980 6.985188 ACATTTTTAGATGTGCTACGACAT 57.015 33.333 0.00 0.00 38.75 3.06
2942 2984 2.886859 GATGTGCTACGACATCCGG 58.113 57.895 0.00 0.00 44.44 5.14
2943 2985 0.102481 GATGTGCTACGACATCCGGT 59.898 55.000 0.00 0.00 44.44 5.28
2944 2986 0.179111 ATGTGCTACGACATCCGGTG 60.179 55.000 0.00 1.37 43.93 4.94
2945 2987 2.165301 GTGCTACGACATCCGGTGC 61.165 63.158 0.00 0.00 43.93 5.01
2946 2988 2.183300 GCTACGACATCCGGTGCA 59.817 61.111 0.00 0.00 43.93 4.57
2947 2989 2.165301 GCTACGACATCCGGTGCAC 61.165 63.158 8.80 8.80 43.93 4.57
2948 2990 1.518572 CTACGACATCCGGTGCACC 60.519 63.158 26.78 26.78 43.93 5.01
2960 3002 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
2961 3003 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
2962 3004 2.325082 GCACCGGTAGCACCACAAG 61.325 63.158 19.85 0.99 38.47 3.16
2963 3005 2.032071 ACCGGTAGCACCACAAGC 59.968 61.111 4.49 0.00 38.47 4.01
2964 3006 2.031919 CCGGTAGCACCACAAGCA 59.968 61.111 0.00 0.00 38.47 3.91
2965 3007 2.325082 CCGGTAGCACCACAAGCAC 61.325 63.158 0.00 0.00 38.47 4.40
2966 3008 2.325082 CGGTAGCACCACAAGCACC 61.325 63.158 6.21 0.00 38.47 5.01
2967 3009 2.325082 GGTAGCACCACAAGCACCG 61.325 63.158 1.01 0.00 38.42 4.94
2968 3010 2.031919 TAGCACCACAAGCACCGG 59.968 61.111 0.00 0.00 0.00 5.28
2979 3021 4.830765 GCACCGGCGCACCAGATA 62.831 66.667 10.19 0.00 34.57 1.98
2980 3022 2.890474 CACCGGCGCACCAGATAC 60.890 66.667 10.83 0.00 34.57 2.24
2981 3023 3.075005 ACCGGCGCACCAGATACT 61.075 61.111 10.83 0.00 34.57 2.12
2982 3024 2.186903 CCGGCGCACCAGATACTT 59.813 61.111 10.83 0.00 34.57 2.24
2983 3025 1.449601 CCGGCGCACCAGATACTTT 60.450 57.895 10.83 0.00 34.57 2.66
2984 3026 1.429148 CCGGCGCACCAGATACTTTC 61.429 60.000 10.83 0.00 34.57 2.62
2985 3027 1.429148 CGGCGCACCAGATACTTTCC 61.429 60.000 10.83 0.00 34.57 3.13
2986 3028 1.095807 GGCGCACCAGATACTTTCCC 61.096 60.000 10.83 0.00 35.26 3.97
2987 3029 1.095807 GCGCACCAGATACTTTCCCC 61.096 60.000 0.30 0.00 0.00 4.81
3192 3234 7.810759 GGTATTTATGTACAAAAACAGTGGTGG 59.189 37.037 0.00 0.00 31.70 4.61
3268 3310 7.222999 GCGAATCTGCTAATGGATAATACTACC 59.777 40.741 0.00 0.00 0.00 3.18
3301 3343 4.371855 TCATCTCAGCGTCGAGTAATTT 57.628 40.909 0.00 0.00 34.46 1.82
3311 3353 4.482386 CGTCGAGTAATTTTGGACAGAGA 58.518 43.478 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 75 6.296202 GGTTTCAGCCCCTTTAATAAAATGGT 60.296 38.462 3.25 0.00 30.61 3.55
123 131 0.391228 TAACACGAGAGCAGCCACAA 59.609 50.000 0.00 0.00 0.00 3.33
158 166 6.763610 CAGGTTAGAGATGCCCTAACTTTTAG 59.236 42.308 11.34 0.00 43.22 1.85
218 226 9.436957 GATGAAGGTCTAAAATTGTCTGAACTA 57.563 33.333 0.00 0.00 0.00 2.24
219 227 7.939039 TGATGAAGGTCTAAAATTGTCTGAACT 59.061 33.333 0.00 0.00 0.00 3.01
243 251 3.571571 CGCGAATAACGAGGGATTATGA 58.428 45.455 0.00 0.00 45.77 2.15
262 271 0.037790 GATCATCTAGGCCAGTCCGC 60.038 60.000 5.01 0.00 40.77 5.54
277 286 1.699634 GGATCAGGGGATTTCGGATCA 59.300 52.381 0.00 0.00 37.50 2.92
337 346 3.858868 GAGTTGGCAGTGTCGGCGA 62.859 63.158 4.99 4.99 0.00 5.54
371 380 2.220653 ATGAGTTCATGGTGGGGTTG 57.779 50.000 0.00 0.00 34.83 3.77
401 413 9.593565 GAATATATGAGAGGAAAGGGGAAAAAT 57.406 33.333 0.00 0.00 0.00 1.82
407 419 6.888632 CCAATGAATATATGAGAGGAAAGGGG 59.111 42.308 0.00 0.00 0.00 4.79
408 420 7.609532 GTCCAATGAATATATGAGAGGAAAGGG 59.390 40.741 0.00 0.00 0.00 3.95
440 452 6.652481 CCAATGCTATTCCTCGATTATCTGTT 59.348 38.462 0.00 0.00 0.00 3.16
443 455 6.611613 TCCAATGCTATTCCTCGATTATCT 57.388 37.500 0.00 0.00 0.00 1.98
524 536 2.802816 CTCACCTCGAACACCTTCAAAG 59.197 50.000 0.00 0.00 0.00 2.77
562 574 2.920490 CAGCTCTAGTTTTCGAGTCAGC 59.080 50.000 0.00 0.00 0.00 4.26
564 576 2.231478 CCCAGCTCTAGTTTTCGAGTCA 59.769 50.000 0.00 0.00 0.00 3.41
586 598 7.110155 TGAAGGAGTTAAAGTAGCCATTTAGG 58.890 38.462 0.00 0.00 41.84 2.69
587 599 8.738645 ATGAAGGAGTTAAAGTAGCCATTTAG 57.261 34.615 0.00 0.00 0.00 1.85
588 600 8.548877 AGATGAAGGAGTTAAAGTAGCCATTTA 58.451 33.333 0.00 0.00 0.00 1.40
589 601 7.406104 AGATGAAGGAGTTAAAGTAGCCATTT 58.594 34.615 0.00 0.00 0.00 2.32
590 602 6.963322 AGATGAAGGAGTTAAAGTAGCCATT 58.037 36.000 0.00 0.00 0.00 3.16
591 603 6.567602 AGATGAAGGAGTTAAAGTAGCCAT 57.432 37.500 0.00 0.00 0.00 4.40
592 604 5.394224 CGAGATGAAGGAGTTAAAGTAGCCA 60.394 44.000 0.00 0.00 0.00 4.75
593 605 5.044558 CGAGATGAAGGAGTTAAAGTAGCC 58.955 45.833 0.00 0.00 0.00 3.93
594 606 4.504826 GCGAGATGAAGGAGTTAAAGTAGC 59.495 45.833 0.00 0.00 0.00 3.58
597 609 4.537135 TGCGAGATGAAGGAGTTAAAGT 57.463 40.909 0.00 0.00 0.00 2.66
598 610 5.639506 TCTTTGCGAGATGAAGGAGTTAAAG 59.360 40.000 0.00 0.00 0.00 1.85
599 611 5.547465 TCTTTGCGAGATGAAGGAGTTAAA 58.453 37.500 0.00 0.00 0.00 1.52
830 872 2.033832 GTCAACGCGGAAACTTCGTTTA 60.034 45.455 12.47 0.00 42.42 2.01
863 905 1.278637 CCTTTTTATAGCGGCGCCG 59.721 57.895 43.13 43.13 43.09 6.46
1563 1605 4.821589 GGCGGGAAGCTCACGGAG 62.822 72.222 9.35 0.00 44.81 4.63
1658 1700 2.719979 CCATACGTCGGACCTCGG 59.280 66.667 1.91 0.00 39.77 4.63
1893 1935 5.779922 TCATACTTTTTGAGTAGTCTGCGT 58.220 37.500 0.00 0.00 43.79 5.24
2256 2298 1.226888 GACGAGGTGGATGTACGCC 60.227 63.158 0.00 0.00 41.35 5.68
2468 2510 1.885388 TGCACGCACTTAAGCACGT 60.885 52.632 15.40 15.40 39.78 4.49
2510 2552 4.462280 ATTTCCCGCCGGTCCGTC 62.462 66.667 11.06 0.00 0.00 4.79
2511 2553 4.770874 CATTTCCCGCCGGTCCGT 62.771 66.667 11.06 0.00 0.00 4.69
2552 2594 2.026636 CCGGATACTTTCCCCTGAACAA 60.027 50.000 0.00 0.00 42.06 2.83
2553 2595 1.557832 CCGGATACTTTCCCCTGAACA 59.442 52.381 0.00 0.00 42.06 3.18
2554 2596 1.558294 ACCGGATACTTTCCCCTGAAC 59.442 52.381 9.46 0.00 42.06 3.18
2555 2597 1.557832 CACCGGATACTTTCCCCTGAA 59.442 52.381 9.46 0.00 42.06 3.02
2556 2598 1.200519 CACCGGATACTTTCCCCTGA 58.799 55.000 9.46 0.00 42.06 3.86
2557 2599 0.463833 GCACCGGATACTTTCCCCTG 60.464 60.000 9.46 0.00 42.06 4.45
2558 2600 0.912487 TGCACCGGATACTTTCCCCT 60.912 55.000 9.46 0.00 42.06 4.79
2559 2601 0.746923 GTGCACCGGATACTTTCCCC 60.747 60.000 9.46 0.00 42.06 4.81
2560 2602 0.746923 GGTGCACCGGATACTTTCCC 60.747 60.000 22.49 0.00 42.06 3.97
2561 2603 2.776659 GGTGCACCGGATACTTTCC 58.223 57.895 22.49 0.00 41.59 3.13
2579 2621 3.788766 GTAGCACCACAAGCGCCG 61.789 66.667 2.29 0.00 37.01 6.46
2580 2622 3.431725 GGTAGCACCACAAGCGCC 61.432 66.667 2.29 0.00 38.42 6.53
2581 2623 3.788766 CGGTAGCACCACAAGCGC 61.789 66.667 0.00 0.00 38.47 5.92
2582 2624 3.118454 CCGGTAGCACCACAAGCG 61.118 66.667 0.00 0.00 38.47 4.68
2583 2625 2.032071 ACCGGTAGCACCACAAGC 59.968 61.111 4.49 0.00 38.47 4.01
2584 2626 2.325082 GCACCGGTAGCACCACAAG 61.325 63.158 19.85 0.99 38.47 3.16
2585 2627 2.281208 GCACCGGTAGCACCACAA 60.281 61.111 19.85 0.00 38.47 3.33
2586 2628 3.551407 TGCACCGGTAGCACCACA 61.551 61.111 22.47 5.12 38.47 4.17
2599 2641 4.460683 TATGGGCGTCCGGTGCAC 62.461 66.667 20.11 17.86 35.91 4.57
2600 2642 4.155733 CTATGGGCGTCCGGTGCA 62.156 66.667 20.11 4.25 35.24 4.57
2610 2652 4.713854 CATTTTTAAATGCGCTATGGGC 57.286 40.909 9.73 0.00 39.29 5.36
2649 2691 9.153721 CCAATGTTGTATGAATGTGCTAATTTT 57.846 29.630 0.00 0.00 0.00 1.82
2650 2692 8.313292 ACCAATGTTGTATGAATGTGCTAATTT 58.687 29.630 0.00 0.00 0.00 1.82
2651 2693 7.839907 ACCAATGTTGTATGAATGTGCTAATT 58.160 30.769 0.00 0.00 0.00 1.40
2652 2694 7.408756 ACCAATGTTGTATGAATGTGCTAAT 57.591 32.000 0.00 0.00 0.00 1.73
2653 2695 6.832520 ACCAATGTTGTATGAATGTGCTAA 57.167 33.333 0.00 0.00 0.00 3.09
2654 2696 6.432472 TGAACCAATGTTGTATGAATGTGCTA 59.568 34.615 0.00 0.00 33.97 3.49
2655 2697 5.243507 TGAACCAATGTTGTATGAATGTGCT 59.756 36.000 0.00 0.00 33.97 4.40
2656 2698 5.468592 TGAACCAATGTTGTATGAATGTGC 58.531 37.500 0.00 0.00 33.97 4.57
2657 2699 7.092079 ACATGAACCAATGTTGTATGAATGTG 58.908 34.615 0.00 0.00 37.50 3.21
2658 2700 7.230849 ACATGAACCAATGTTGTATGAATGT 57.769 32.000 0.00 0.00 37.50 2.71
2669 2711 3.815856 TGCAACAACATGAACCAATGT 57.184 38.095 0.00 0.00 42.62 2.71
2670 2712 5.481200 TTTTGCAACAACATGAACCAATG 57.519 34.783 0.00 0.00 0.00 2.82
2671 2713 6.696441 AATTTTGCAACAACATGAACCAAT 57.304 29.167 0.00 0.00 0.00 3.16
2672 2714 6.149973 TGAAATTTTGCAACAACATGAACCAA 59.850 30.769 0.00 0.00 0.00 3.67
2673 2715 5.645067 TGAAATTTTGCAACAACATGAACCA 59.355 32.000 0.00 0.00 0.00 3.67
2674 2716 6.116680 TGAAATTTTGCAACAACATGAACC 57.883 33.333 0.00 0.00 0.00 3.62
2675 2717 7.242783 AGTTGAAATTTTGCAACAACATGAAC 58.757 30.769 23.69 12.05 45.08 3.18
2676 2718 7.375106 AGTTGAAATTTTGCAACAACATGAA 57.625 28.000 23.69 6.34 45.08 2.57
2677 2719 6.981762 AGTTGAAATTTTGCAACAACATGA 57.018 29.167 23.69 0.00 45.08 3.07
2678 2720 7.242079 TGAAGTTGAAATTTTGCAACAACATG 58.758 30.769 23.69 0.00 45.08 3.21
2679 2721 7.375106 TGAAGTTGAAATTTTGCAACAACAT 57.625 28.000 23.69 16.13 45.08 2.71
2680 2722 6.791887 TGAAGTTGAAATTTTGCAACAACA 57.208 29.167 23.69 15.77 45.08 3.33
2681 2723 8.672214 ATTTGAAGTTGAAATTTTGCAACAAC 57.328 26.923 19.28 17.55 45.08 3.32
2682 2724 9.688592 AAATTTGAAGTTGAAATTTTGCAACAA 57.311 22.222 16.92 0.00 45.08 2.83
2683 2725 9.125906 CAAATTTGAAGTTGAAATTTTGCAACA 57.874 25.926 19.20 0.00 45.08 3.33
2684 2726 9.339492 TCAAATTTGAAGTTGAAATTTTGCAAC 57.661 25.926 19.20 12.55 39.68 4.17
2685 2727 9.903682 TTCAAATTTGAAGTTGAAATTTTGCAA 57.096 22.222 26.01 11.65 46.10 4.08
2695 2737 7.254050 CGAGCAATGTTTCAAATTTGAAGTTGA 60.254 33.333 32.55 20.82 46.68 3.18
2696 2738 6.842282 CGAGCAATGTTTCAAATTTGAAGTTG 59.158 34.615 28.75 28.75 46.68 3.16
2697 2739 6.756074 TCGAGCAATGTTTCAAATTTGAAGTT 59.244 30.769 27.52 21.20 46.68 2.66
2698 2740 6.272318 TCGAGCAATGTTTCAAATTTGAAGT 58.728 32.000 27.52 17.59 46.68 3.01
2699 2741 6.129009 CCTCGAGCAATGTTTCAAATTTGAAG 60.129 38.462 27.52 18.96 46.68 3.02
2700 2742 5.691305 CCTCGAGCAATGTTTCAAATTTGAA 59.309 36.000 26.01 26.01 44.78 2.69
2701 2743 5.221224 ACCTCGAGCAATGTTTCAAATTTGA 60.221 36.000 16.91 16.91 34.92 2.69
2702 2744 4.984161 ACCTCGAGCAATGTTTCAAATTTG 59.016 37.500 12.15 12.15 0.00 2.32
2703 2745 5.200368 ACCTCGAGCAATGTTTCAAATTT 57.800 34.783 6.99 0.00 0.00 1.82
2704 2746 4.853924 ACCTCGAGCAATGTTTCAAATT 57.146 36.364 6.99 0.00 0.00 1.82
2705 2747 7.624360 TTATACCTCGAGCAATGTTTCAAAT 57.376 32.000 6.99 0.00 0.00 2.32
2706 2748 7.441890 TTTATACCTCGAGCAATGTTTCAAA 57.558 32.000 6.99 0.00 0.00 2.69
2707 2749 7.441890 TTTTATACCTCGAGCAATGTTTCAA 57.558 32.000 6.99 0.00 0.00 2.69
2708 2750 7.441890 TTTTTATACCTCGAGCAATGTTTCA 57.558 32.000 6.99 0.00 0.00 2.69
2709 2751 8.181573 TGATTTTTATACCTCGAGCAATGTTTC 58.818 33.333 6.99 0.00 0.00 2.78
2710 2752 7.968405 GTGATTTTTATACCTCGAGCAATGTTT 59.032 33.333 6.99 0.00 0.00 2.83
2711 2753 7.120579 TGTGATTTTTATACCTCGAGCAATGTT 59.879 33.333 6.99 0.00 0.00 2.71
2712 2754 6.597672 TGTGATTTTTATACCTCGAGCAATGT 59.402 34.615 6.99 1.74 0.00 2.71
2713 2755 7.015226 TGTGATTTTTATACCTCGAGCAATG 57.985 36.000 6.99 0.00 0.00 2.82
2714 2756 7.624360 TTGTGATTTTTATACCTCGAGCAAT 57.376 32.000 6.99 4.93 0.00 3.56
2715 2757 7.441890 TTTGTGATTTTTATACCTCGAGCAA 57.558 32.000 6.99 0.00 0.00 3.91
2716 2758 7.441890 TTTTGTGATTTTTATACCTCGAGCA 57.558 32.000 6.99 0.00 0.00 4.26
2717 2759 8.798153 CAATTTTGTGATTTTTATACCTCGAGC 58.202 33.333 6.99 0.00 0.00 5.03
2718 2760 9.289303 CCAATTTTGTGATTTTTATACCTCGAG 57.711 33.333 5.13 5.13 0.00 4.04
2719 2761 7.757624 GCCAATTTTGTGATTTTTATACCTCGA 59.242 33.333 0.00 0.00 0.00 4.04
2720 2762 7.543868 TGCCAATTTTGTGATTTTTATACCTCG 59.456 33.333 0.00 0.00 0.00 4.63
2721 2763 8.655970 GTGCCAATTTTGTGATTTTTATACCTC 58.344 33.333 0.00 0.00 0.00 3.85
2722 2764 8.374743 AGTGCCAATTTTGTGATTTTTATACCT 58.625 29.630 0.00 0.00 0.00 3.08
2723 2765 8.442384 CAGTGCCAATTTTGTGATTTTTATACC 58.558 33.333 0.00 0.00 0.00 2.73
2724 2766 9.202273 TCAGTGCCAATTTTGTGATTTTTATAC 57.798 29.630 0.00 0.00 0.00 1.47
2725 2767 9.770097 TTCAGTGCCAATTTTGTGATTTTTATA 57.230 25.926 0.00 0.00 0.00 0.98
2726 2768 8.674263 TTCAGTGCCAATTTTGTGATTTTTAT 57.326 26.923 0.00 0.00 0.00 1.40
2727 2769 8.674263 ATTCAGTGCCAATTTTGTGATTTTTA 57.326 26.923 0.00 0.00 0.00 1.52
2728 2770 6.998968 TTCAGTGCCAATTTTGTGATTTTT 57.001 29.167 0.00 0.00 0.00 1.94
2729 2771 7.933033 ACTATTCAGTGCCAATTTTGTGATTTT 59.067 29.630 0.00 0.00 32.25 1.82
2730 2772 7.444299 ACTATTCAGTGCCAATTTTGTGATTT 58.556 30.769 0.00 0.00 32.25 2.17
2731 2773 6.996509 ACTATTCAGTGCCAATTTTGTGATT 58.003 32.000 0.00 0.00 32.25 2.57
2732 2774 6.594788 ACTATTCAGTGCCAATTTTGTGAT 57.405 33.333 0.00 0.00 32.25 3.06
2733 2775 6.488344 TGTACTATTCAGTGCCAATTTTGTGA 59.512 34.615 0.00 0.00 36.63 3.58
2734 2776 6.582295 GTGTACTATTCAGTGCCAATTTTGTG 59.418 38.462 0.00 0.00 36.63 3.33
2735 2777 6.264292 TGTGTACTATTCAGTGCCAATTTTGT 59.736 34.615 0.00 0.00 36.63 2.83
2736 2778 6.676950 TGTGTACTATTCAGTGCCAATTTTG 58.323 36.000 0.00 0.00 36.63 2.44
2737 2779 6.892658 TGTGTACTATTCAGTGCCAATTTT 57.107 33.333 0.00 0.00 36.63 1.82
2738 2780 6.714810 TCTTGTGTACTATTCAGTGCCAATTT 59.285 34.615 0.00 0.00 36.63 1.82
2739 2781 6.237901 TCTTGTGTACTATTCAGTGCCAATT 58.762 36.000 0.00 0.00 36.63 2.32
2740 2782 5.804639 TCTTGTGTACTATTCAGTGCCAAT 58.195 37.500 0.00 0.00 36.63 3.16
2741 2783 5.222079 TCTTGTGTACTATTCAGTGCCAA 57.778 39.130 0.00 0.00 36.63 4.52
2742 2784 4.882842 TCTTGTGTACTATTCAGTGCCA 57.117 40.909 0.00 0.00 36.63 4.92
2743 2785 7.042335 ACTTATCTTGTGTACTATTCAGTGCC 58.958 38.462 0.00 0.00 36.63 5.01
2744 2786 8.383619 CAACTTATCTTGTGTACTATTCAGTGC 58.616 37.037 0.00 0.00 37.85 4.40
2745 2787 8.873830 CCAACTTATCTTGTGTACTATTCAGTG 58.126 37.037 0.00 0.00 36.14 3.66
2746 2788 8.041323 CCCAACTTATCTTGTGTACTATTCAGT 58.959 37.037 0.00 0.00 38.91 3.41
2747 2789 7.011482 GCCCAACTTATCTTGTGTACTATTCAG 59.989 40.741 0.00 0.00 0.00 3.02
2748 2790 6.821665 GCCCAACTTATCTTGTGTACTATTCA 59.178 38.462 0.00 0.00 0.00 2.57
2749 2791 7.048512 AGCCCAACTTATCTTGTGTACTATTC 58.951 38.462 0.00 0.00 0.00 1.75
2750 2792 6.958767 AGCCCAACTTATCTTGTGTACTATT 58.041 36.000 0.00 0.00 0.00 1.73
2751 2793 6.561519 AGCCCAACTTATCTTGTGTACTAT 57.438 37.500 0.00 0.00 0.00 2.12
2752 2794 6.368779 AAGCCCAACTTATCTTGTGTACTA 57.631 37.500 0.00 0.00 36.62 1.82
2753 2795 4.910458 AGCCCAACTTATCTTGTGTACT 57.090 40.909 0.00 0.00 0.00 2.73
2754 2796 5.959618 AAAGCCCAACTTATCTTGTGTAC 57.040 39.130 0.00 0.00 37.75 2.90
2755 2797 7.011499 TCTAAAGCCCAACTTATCTTGTGTA 57.989 36.000 0.00 0.00 37.75 2.90
2756 2798 5.876357 TCTAAAGCCCAACTTATCTTGTGT 58.124 37.500 0.00 0.00 37.75 3.72
2757 2799 7.396540 AATCTAAAGCCCAACTTATCTTGTG 57.603 36.000 0.00 0.00 37.75 3.33
2758 2800 7.093771 CCAAATCTAAAGCCCAACTTATCTTGT 60.094 37.037 0.00 0.00 37.75 3.16
2759 2801 7.260603 CCAAATCTAAAGCCCAACTTATCTTG 58.739 38.462 0.00 0.00 37.75 3.02
2760 2802 6.127338 GCCAAATCTAAAGCCCAACTTATCTT 60.127 38.462 0.00 0.00 37.75 2.40
2761 2803 5.360999 GCCAAATCTAAAGCCCAACTTATCT 59.639 40.000 0.00 0.00 37.75 1.98
2762 2804 5.451937 GGCCAAATCTAAAGCCCAACTTATC 60.452 44.000 0.00 0.00 37.75 1.75
2763 2805 4.405680 GGCCAAATCTAAAGCCCAACTTAT 59.594 41.667 0.00 0.00 37.75 1.73
2764 2806 3.767131 GGCCAAATCTAAAGCCCAACTTA 59.233 43.478 0.00 0.00 37.75 2.24
2765 2807 2.567169 GGCCAAATCTAAAGCCCAACTT 59.433 45.455 0.00 0.00 41.70 2.66
2766 2808 2.179427 GGCCAAATCTAAAGCCCAACT 58.821 47.619 0.00 0.00 39.60 3.16
2767 2809 2.672961 GGCCAAATCTAAAGCCCAAC 57.327 50.000 0.00 0.00 39.60 3.77
2771 2813 4.161377 TGTTAATGGGCCAAATCTAAAGCC 59.839 41.667 11.89 0.00 44.99 4.35
2772 2814 5.109210 GTGTTAATGGGCCAAATCTAAAGC 58.891 41.667 11.89 0.00 0.00 3.51
2773 2815 6.279513 TGTGTTAATGGGCCAAATCTAAAG 57.720 37.500 11.89 0.00 0.00 1.85
2774 2816 6.865834 ATGTGTTAATGGGCCAAATCTAAA 57.134 33.333 11.89 0.00 0.00 1.85
2775 2817 6.438741 TCAATGTGTTAATGGGCCAAATCTAA 59.561 34.615 11.89 3.40 0.00 2.10
2776 2818 5.954752 TCAATGTGTTAATGGGCCAAATCTA 59.045 36.000 11.89 0.00 0.00 1.98
2777 2819 4.776837 TCAATGTGTTAATGGGCCAAATCT 59.223 37.500 11.89 0.00 0.00 2.40
2778 2820 5.083533 TCAATGTGTTAATGGGCCAAATC 57.916 39.130 11.89 1.57 0.00 2.17
2779 2821 5.430007 CATCAATGTGTTAATGGGCCAAAT 58.570 37.500 11.89 5.18 0.00 2.32
2780 2822 4.829968 CATCAATGTGTTAATGGGCCAAA 58.170 39.130 11.89 0.00 0.00 3.28
2781 2823 3.369261 GCATCAATGTGTTAATGGGCCAA 60.369 43.478 11.89 0.00 0.00 4.52
2782 2824 2.168106 GCATCAATGTGTTAATGGGCCA 59.832 45.455 9.61 9.61 0.00 5.36
2783 2825 2.483538 GGCATCAATGTGTTAATGGGCC 60.484 50.000 0.00 0.00 0.00 5.80
2784 2826 2.168106 TGGCATCAATGTGTTAATGGGC 59.832 45.455 0.00 0.00 0.00 5.36
2785 2827 4.468765 TTGGCATCAATGTGTTAATGGG 57.531 40.909 0.00 0.00 0.00 4.00
2786 2828 6.988622 AATTTGGCATCAATGTGTTAATGG 57.011 33.333 0.00 0.00 32.28 3.16
2787 2829 7.808672 ACAAATTTGGCATCAATGTGTTAATG 58.191 30.769 21.74 0.00 32.28 1.90
2788 2830 7.982761 ACAAATTTGGCATCAATGTGTTAAT 57.017 28.000 21.74 0.00 32.28 1.40
2789 2831 7.798596 AACAAATTTGGCATCAATGTGTTAA 57.201 28.000 21.74 0.00 33.58 2.01
2790 2832 9.499479 AATAACAAATTTGGCATCAATGTGTTA 57.501 25.926 21.37 21.37 37.69 2.41
2791 2833 7.982761 ATAACAAATTTGGCATCAATGTGTT 57.017 28.000 21.74 19.22 36.43 3.32
2792 2834 7.982761 AATAACAAATTTGGCATCAATGTGT 57.017 28.000 21.74 2.51 32.28 3.72
2793 2835 9.680315 AAAAATAACAAATTTGGCATCAATGTG 57.320 25.926 21.74 1.36 32.28 3.21
2794 2836 9.680315 CAAAAATAACAAATTTGGCATCAATGT 57.320 25.926 21.74 0.00 31.93 2.71
2795 2837 9.680315 ACAAAAATAACAAATTTGGCATCAATG 57.320 25.926 21.74 14.32 38.14 2.82
2801 2843 9.770097 TGAGATACAAAAATAACAAATTTGGCA 57.230 25.926 21.74 9.50 38.14 4.92
2838 2880 9.421806 TGTCGCAAAAATTCATATCAAAATTCT 57.578 25.926 0.00 0.00 0.00 2.40
2840 2882 9.810231 GTTGTCGCAAAAATTCATATCAAAATT 57.190 25.926 0.00 0.00 0.00 1.82
2841 2883 8.986847 TGTTGTCGCAAAAATTCATATCAAAAT 58.013 25.926 0.00 0.00 0.00 1.82
2842 2884 8.357796 TGTTGTCGCAAAAATTCATATCAAAA 57.642 26.923 0.00 0.00 0.00 2.44
2843 2885 7.936950 TGTTGTCGCAAAAATTCATATCAAA 57.063 28.000 0.00 0.00 0.00 2.69
2844 2886 9.288124 CTATGTTGTCGCAAAAATTCATATCAA 57.712 29.630 0.00 0.00 0.00 2.57
2845 2887 7.914871 CCTATGTTGTCGCAAAAATTCATATCA 59.085 33.333 0.00 0.00 0.00 2.15
2846 2888 7.096477 GCCTATGTTGTCGCAAAAATTCATATC 60.096 37.037 0.00 0.00 0.00 1.63
2847 2889 6.697019 GCCTATGTTGTCGCAAAAATTCATAT 59.303 34.615 0.00 0.00 0.00 1.78
2848 2890 6.033341 GCCTATGTTGTCGCAAAAATTCATA 58.967 36.000 0.00 0.00 0.00 2.15
2849 2891 4.864247 GCCTATGTTGTCGCAAAAATTCAT 59.136 37.500 0.00 0.00 0.00 2.57
2850 2892 4.233789 GCCTATGTTGTCGCAAAAATTCA 58.766 39.130 0.00 0.00 0.00 2.57
2851 2893 3.612423 GGCCTATGTTGTCGCAAAAATTC 59.388 43.478 0.00 0.00 0.00 2.17
2852 2894 3.006323 TGGCCTATGTTGTCGCAAAAATT 59.994 39.130 3.32 0.00 0.00 1.82
2853 2895 2.560542 TGGCCTATGTTGTCGCAAAAAT 59.439 40.909 3.32 0.00 0.00 1.82
2854 2896 1.957177 TGGCCTATGTTGTCGCAAAAA 59.043 42.857 3.32 0.00 0.00 1.94
2855 2897 1.610363 TGGCCTATGTTGTCGCAAAA 58.390 45.000 3.32 0.00 0.00 2.44
2856 2898 1.610363 TTGGCCTATGTTGTCGCAAA 58.390 45.000 3.32 0.00 0.00 3.68
2857 2899 1.832883 ATTGGCCTATGTTGTCGCAA 58.167 45.000 3.32 0.00 0.00 4.85
2858 2900 2.700722 TATTGGCCTATGTTGTCGCA 57.299 45.000 10.19 0.00 0.00 5.10
2859 2901 4.568152 AAATATTGGCCTATGTTGTCGC 57.432 40.909 10.19 0.00 0.00 5.19
2860 2902 4.739716 GCAAAATATTGGCCTATGTTGTCG 59.260 41.667 10.19 3.45 37.02 4.35
2872 2914 2.958213 AGCACGTTGGCAAAATATTGG 58.042 42.857 0.00 0.00 37.02 3.16
2873 2915 4.480541 TGTAGCACGTTGGCAAAATATTG 58.519 39.130 0.00 0.00 39.65 1.90
2874 2916 4.775058 TGTAGCACGTTGGCAAAATATT 57.225 36.364 0.00 0.00 35.83 1.28
2875 2917 4.981806 ATGTAGCACGTTGGCAAAATAT 57.018 36.364 0.00 0.00 35.83 1.28
2876 2918 6.443934 AATATGTAGCACGTTGGCAAAATA 57.556 33.333 0.00 0.00 35.83 1.40
2877 2919 4.981806 ATATGTAGCACGTTGGCAAAAT 57.018 36.364 0.00 0.00 35.83 1.82
2878 2920 4.775058 AATATGTAGCACGTTGGCAAAA 57.225 36.364 0.00 0.00 35.83 2.44
2879 2921 4.775058 AAATATGTAGCACGTTGGCAAA 57.225 36.364 0.00 0.00 35.83 3.68
2880 2922 4.457603 AGAAAATATGTAGCACGTTGGCAA 59.542 37.500 0.00 0.00 35.83 4.52
2881 2923 4.006989 AGAAAATATGTAGCACGTTGGCA 58.993 39.130 0.36 0.00 35.83 4.92
2882 2924 4.094294 TCAGAAAATATGTAGCACGTTGGC 59.906 41.667 0.00 0.00 0.00 4.52
2883 2925 5.794687 TCAGAAAATATGTAGCACGTTGG 57.205 39.130 0.00 0.00 0.00 3.77
2884 2926 8.673626 AAAATCAGAAAATATGTAGCACGTTG 57.326 30.769 0.00 0.00 0.00 4.10
2910 2952 9.601971 GTCGTAGCACATCTAAAAATGTTTTAA 57.398 29.630 0.00 0.00 37.78 1.52
2911 2953 8.775527 TGTCGTAGCACATCTAAAAATGTTTTA 58.224 29.630 0.00 0.00 37.78 1.52
2912 2954 7.644490 TGTCGTAGCACATCTAAAAATGTTTT 58.356 30.769 0.00 0.00 37.78 2.43
2913 2955 7.197071 TGTCGTAGCACATCTAAAAATGTTT 57.803 32.000 0.00 0.00 37.78 2.83
2914 2956 6.795098 TGTCGTAGCACATCTAAAAATGTT 57.205 33.333 0.00 0.00 37.78 2.71
2915 2957 6.985188 ATGTCGTAGCACATCTAAAAATGT 57.015 33.333 0.00 0.00 40.49 2.71
2925 2967 0.179111 CACCGGATGTCGTAGCACAT 60.179 55.000 9.46 0.00 39.84 3.21
2926 2968 1.214325 CACCGGATGTCGTAGCACA 59.786 57.895 9.46 0.00 37.11 4.57
2927 2969 2.165301 GCACCGGATGTCGTAGCAC 61.165 63.158 9.46 0.00 36.94 4.40
2928 2970 2.183300 GCACCGGATGTCGTAGCA 59.817 61.111 9.46 0.00 36.94 3.49
2929 2971 2.165301 GTGCACCGGATGTCGTAGC 61.165 63.158 9.46 0.00 37.29 3.58
2930 2972 1.518572 GGTGCACCGGATGTCGTAG 60.519 63.158 22.49 0.00 37.11 3.51
2931 2973 2.574929 GGTGCACCGGATGTCGTA 59.425 61.111 22.49 0.00 37.11 3.43
2943 2985 3.108288 TTGTGGTGCTACCGGTGCA 62.108 57.895 19.93 21.51 42.58 4.57
2944 2986 2.281208 TTGTGGTGCTACCGGTGC 60.281 61.111 19.93 19.04 42.58 5.01
2945 2987 2.325082 GCTTGTGGTGCTACCGGTG 61.325 63.158 19.93 8.61 42.58 4.94
2946 2988 2.032071 GCTTGTGGTGCTACCGGT 59.968 61.111 13.98 13.98 42.58 5.28
2947 2989 2.031919 TGCTTGTGGTGCTACCGG 59.968 61.111 0.00 0.00 42.58 5.28
2948 2990 2.325082 GGTGCTTGTGGTGCTACCG 61.325 63.158 0.00 0.00 42.58 4.02
2949 2991 2.325082 CGGTGCTTGTGGTGCTACC 61.325 63.158 0.00 0.00 39.22 3.18
2950 2992 2.325082 CCGGTGCTTGTGGTGCTAC 61.325 63.158 0.00 0.00 0.00 3.58
2951 2993 2.031919 CCGGTGCTTGTGGTGCTA 59.968 61.111 0.00 0.00 0.00 3.49
2962 3004 4.830765 TATCTGGTGCGCCGGTGC 62.831 66.667 32.83 32.83 41.89 5.01
2963 3005 2.852495 AAGTATCTGGTGCGCCGGTG 62.852 60.000 24.26 11.67 41.89 4.94
2964 3006 2.180159 AAAGTATCTGGTGCGCCGGT 62.180 55.000 24.26 14.12 41.89 5.28
2965 3007 1.429148 GAAAGTATCTGGTGCGCCGG 61.429 60.000 19.68 19.68 42.59 6.13
2966 3008 1.429148 GGAAAGTATCTGGTGCGCCG 61.429 60.000 12.58 6.81 37.67 6.46
2967 3009 1.095807 GGGAAAGTATCTGGTGCGCC 61.096 60.000 10.11 10.11 0.00 6.53
2968 3010 1.095807 GGGGAAAGTATCTGGTGCGC 61.096 60.000 0.00 0.00 0.00 6.09
2969 3011 0.541863 AGGGGAAAGTATCTGGTGCG 59.458 55.000 0.00 0.00 0.00 5.34
2970 3012 2.290960 ACAAGGGGAAAGTATCTGGTGC 60.291 50.000 0.00 0.00 0.00 5.01
2971 3013 3.721087 ACAAGGGGAAAGTATCTGGTG 57.279 47.619 0.00 0.00 0.00 4.17
2972 3014 3.655777 TGAACAAGGGGAAAGTATCTGGT 59.344 43.478 0.00 0.00 0.00 4.00
2973 3015 4.265073 CTGAACAAGGGGAAAGTATCTGG 58.735 47.826 0.00 0.00 0.00 3.86
2974 3016 4.265073 CCTGAACAAGGGGAAAGTATCTG 58.735 47.826 0.00 0.00 43.15 2.90
2975 3017 4.576330 CCTGAACAAGGGGAAAGTATCT 57.424 45.455 0.00 0.00 43.15 1.98
2986 3028 0.250989 TTTACCCGCCCTGAACAAGG 60.251 55.000 0.00 0.00 46.94 3.61
2987 3029 1.539827 CTTTTACCCGCCCTGAACAAG 59.460 52.381 0.00 0.00 0.00 3.16
3141 3183 7.816031 CCAATAAATCAACAAATCTTGAGCTGT 59.184 33.333 0.00 0.00 33.65 4.40
3192 3234 4.025979 CCTTTCACACGTAAGACAAGACAC 60.026 45.833 0.00 0.00 43.62 3.67
3246 3288 7.901322 TGGAGGTAGTATTATCCATTAGCAGAT 59.099 37.037 0.00 0.00 36.92 2.90
3248 3290 7.397476 TCTGGAGGTAGTATTATCCATTAGCAG 59.603 40.741 0.00 0.00 40.91 4.24
3249 3291 7.246027 TCTGGAGGTAGTATTATCCATTAGCA 58.754 38.462 0.00 0.00 40.91 3.49
3250 3292 7.719871 TCTGGAGGTAGTATTATCCATTAGC 57.280 40.000 0.00 0.00 40.91 3.09
3268 3310 4.236147 CGCTGAGATGAATGTATCTGGAG 58.764 47.826 0.00 0.00 37.53 3.86
3284 3326 3.060895 GTCCAAAATTACTCGACGCTGAG 59.939 47.826 3.16 3.16 41.86 3.35
3391 3433 8.234546 ACCGACAATTTCTTACACAATTATCAC 58.765 33.333 0.00 0.00 0.00 3.06
3393 3435 9.274065 GAACCGACAATTTCTTACACAATTATC 57.726 33.333 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.