Multiple sequence alignment - TraesCS7B01G206300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G206300 chr7B 100.000 4269 0 0 1 4269 377324732 377320464 0.000000e+00 7884.0
1 TraesCS7B01G206300 chr7B 100.000 28 0 0 3889 3916 100382998 100383025 8.000000e-03 52.8
2 TraesCS7B01G206300 chr7D 96.130 2377 60 13 1902 4269 382944985 382942632 0.000000e+00 3851.0
3 TraesCS7B01G206300 chr7D 96.257 1309 32 12 583 1881 382946395 382945094 0.000000e+00 2130.0
4 TraesCS7B01G206300 chr7D 94.198 586 24 6 1 580 506905345 506904764 0.000000e+00 885.0
5 TraesCS7B01G206300 chr7D 91.398 93 8 0 4177 4269 40597882 40597974 1.250000e-25 128.0
6 TraesCS7B01G206300 chr7A 96.471 1190 32 5 2444 3625 431041055 431039868 0.000000e+00 1956.0
7 TraesCS7B01G206300 chr7A 96.531 1182 25 11 712 1881 431042959 431041782 0.000000e+00 1941.0
8 TraesCS7B01G206300 chr7A 93.934 544 8 9 1902 2445 431041673 431041155 0.000000e+00 798.0
9 TraesCS7B01G206300 chr7A 93.651 252 14 2 4015 4264 431038085 431037834 4.030000e-100 375.0
10 TraesCS7B01G206300 chr7A 92.810 153 4 5 583 730 431043123 431042973 9.300000e-52 215.0
11 TraesCS7B01G206300 chr7A 89.130 92 9 1 4178 4269 430326117 430326207 3.490000e-21 113.0
12 TraesCS7B01G206300 chr7A 95.122 41 2 0 1762 1802 341433489 341433449 9.910000e-07 65.8
13 TraesCS7B01G206300 chr1B 97.785 587 7 4 1 581 635434196 635434782 0.000000e+00 1007.0
14 TraesCS7B01G206300 chr1B 94.257 592 25 4 1 586 531617262 531617850 0.000000e+00 896.0
15 TraesCS7B01G206300 chr1B 90.909 88 8 0 4177 4264 43951776 43951689 7.500000e-23 119.0
16 TraesCS7B01G206300 chr5B 97.124 591 11 2 1 585 688002631 688003221 0.000000e+00 992.0
17 TraesCS7B01G206300 chr5B 90.526 95 7 1 4172 4264 206802810 206802904 1.610000e-24 124.0
18 TraesCS7B01G206300 chr5B 94.118 34 2 0 3883 3916 710507048 710507081 8.000000e-03 52.8
19 TraesCS7B01G206300 chr6A 94.426 592 23 6 1 586 387969967 387970554 0.000000e+00 902.0
20 TraesCS7B01G206300 chr2B 94.567 589 23 4 1 583 23638518 23639103 0.000000e+00 902.0
21 TraesCS7B01G206300 chr2B 94.349 584 23 6 1 579 43052370 43051792 0.000000e+00 887.0
22 TraesCS7B01G206300 chr2B 94.208 587 24 7 1 581 555327735 555328317 0.000000e+00 887.0
23 TraesCS7B01G206300 chr2B 87.368 95 12 0 4170 4264 233254809 233254715 4.510000e-20 110.0
24 TraesCS7B01G206300 chr6D 94.378 587 24 4 1 581 38573905 38574488 0.000000e+00 893.0
25 TraesCS7B01G206300 chr6D 94.286 35 2 0 3885 3919 39749088 39749054 2.000000e-03 54.7
26 TraesCS7B01G206300 chr5A 89.773 88 9 0 4177 4264 32164101 32164188 3.490000e-21 113.0
27 TraesCS7B01G206300 chr5A 83.908 87 6 5 4042 4127 536993238 536993159 4.580000e-10 76.8
28 TraesCS7B01G206300 chr5A 83.908 87 6 5 4042 4127 537001181 537001102 4.580000e-10 76.8
29 TraesCS7B01G206300 chr5A 83.099 71 9 3 1751 1820 533555639 533555707 1.280000e-05 62.1
30 TraesCS7B01G206300 chr2A 89.011 91 8 2 4174 4264 722758314 722758402 1.250000e-20 111.0
31 TraesCS7B01G206300 chr2A 89.011 91 8 2 4174 4264 722766850 722766938 1.250000e-20 111.0
32 TraesCS7B01G206300 chr1D 89.394 66 5 2 1761 1825 392573953 392573889 9.840000e-12 82.4
33 TraesCS7B01G206300 chr1D 94.286 35 2 0 3882 3916 296280752 296280718 2.000000e-03 54.7
34 TraesCS7B01G206300 chrUn 92.308 52 3 1 1759 1809 333755763 333755712 5.920000e-09 73.1
35 TraesCS7B01G206300 chr3A 92.308 52 3 1 1759 1809 702387346 702387295 5.920000e-09 73.1
36 TraesCS7B01G206300 chr3A 92.308 52 3 1 1759 1809 702404973 702404922 5.920000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G206300 chr7B 377320464 377324732 4268 True 7884.0 7884 100.0000 1 4269 1 chr7B.!!$R1 4268
1 TraesCS7B01G206300 chr7D 382942632 382946395 3763 True 2990.5 3851 96.1935 583 4269 2 chr7D.!!$R2 3686
2 TraesCS7B01G206300 chr7D 506904764 506905345 581 True 885.0 885 94.1980 1 580 1 chr7D.!!$R1 579
3 TraesCS7B01G206300 chr7A 431037834 431043123 5289 True 1057.0 1956 94.6794 583 4264 5 chr7A.!!$R2 3681
4 TraesCS7B01G206300 chr1B 635434196 635434782 586 False 1007.0 1007 97.7850 1 581 1 chr1B.!!$F2 580
5 TraesCS7B01G206300 chr1B 531617262 531617850 588 False 896.0 896 94.2570 1 586 1 chr1B.!!$F1 585
6 TraesCS7B01G206300 chr5B 688002631 688003221 590 False 992.0 992 97.1240 1 585 1 chr5B.!!$F2 584
7 TraesCS7B01G206300 chr6A 387969967 387970554 587 False 902.0 902 94.4260 1 586 1 chr6A.!!$F1 585
8 TraesCS7B01G206300 chr2B 23638518 23639103 585 False 902.0 902 94.5670 1 583 1 chr2B.!!$F1 582
9 TraesCS7B01G206300 chr2B 43051792 43052370 578 True 887.0 887 94.3490 1 579 1 chr2B.!!$R1 578
10 TraesCS7B01G206300 chr2B 555327735 555328317 582 False 887.0 887 94.2080 1 581 1 chr2B.!!$F2 580
11 TraesCS7B01G206300 chr6D 38573905 38574488 583 False 893.0 893 94.3780 1 581 1 chr6D.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 466 1.512926 GTCGTTGATCTGCCAGTGTT 58.487 50.000 0.0 0.0 0.0 3.32 F
1311 1357 1.409427 CTCTCCCCTGTTTAGCCTACG 59.591 57.143 0.0 0.0 0.0 3.51 F
1821 1875 0.706433 TGTTAGACGGAGGGGGTACT 59.294 55.000 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1781 0.880278 GAAGCAGTCACAAGCACCGA 60.880 55.0 0.00 0.0 0.0 4.69 R
2714 2959 1.305930 GGTGGGACGGAAACAGATGC 61.306 60.0 0.00 0.0 0.0 3.91 R
3789 5327 0.308993 GTTAGATCTTGGCCATGCGC 59.691 55.0 6.09 0.0 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 299 2.507854 CCCACCATCCCTCGCGTAT 61.508 63.158 5.77 0.00 0.00 3.06
460 466 1.512926 GTCGTTGATCTGCCAGTGTT 58.487 50.000 0.00 0.00 0.00 3.32
724 737 6.769134 AATAAAACCCAGGCTGTACAATAC 57.231 37.500 14.43 0.00 0.00 1.89
775 817 2.813754 TGAAGACTTCCAGCAAAATCCG 59.186 45.455 12.66 0.00 0.00 4.18
1288 1334 5.016831 AGCGAGGTGGGATTTTTATTTTCT 58.983 37.500 0.00 0.00 0.00 2.52
1304 1350 9.649316 TTTTATTTTCTTTCTCTCCCCTGTTTA 57.351 29.630 0.00 0.00 0.00 2.01
1305 1351 8.863872 TTATTTTCTTTCTCTCCCCTGTTTAG 57.136 34.615 0.00 0.00 0.00 1.85
1306 1352 3.983044 TCTTTCTCTCCCCTGTTTAGC 57.017 47.619 0.00 0.00 0.00 3.09
1308 1354 2.344093 TTCTCTCCCCTGTTTAGCCT 57.656 50.000 0.00 0.00 0.00 4.58
1309 1355 3.484953 TTCTCTCCCCTGTTTAGCCTA 57.515 47.619 0.00 0.00 0.00 3.93
1310 1356 2.748388 TCTCTCCCCTGTTTAGCCTAC 58.252 52.381 0.00 0.00 0.00 3.18
1311 1357 1.409427 CTCTCCCCTGTTTAGCCTACG 59.591 57.143 0.00 0.00 0.00 3.51
1329 1376 4.833380 CCTACGGGGAGATGAGATTCTTTA 59.167 45.833 0.00 0.00 37.23 1.85
1333 1380 6.058183 ACGGGGAGATGAGATTCTTTATTTG 58.942 40.000 0.00 0.00 0.00 2.32
1342 1389 7.230849 TGAGATTCTTTATTTGGTTGCATGT 57.769 32.000 0.00 0.00 0.00 3.21
1393 1443 3.695830 AAAAGTGTTCTGATCGCCCTA 57.304 42.857 0.00 0.00 0.00 3.53
1584 1638 3.256631 TCTGGTAGGTTCGGTGTTAGTTC 59.743 47.826 0.00 0.00 0.00 3.01
1683 1737 9.088512 AGAGCTATTTTAGTGTTTAGTTCATCG 57.911 33.333 0.00 0.00 0.00 3.84
1688 1742 8.950403 ATTTTAGTGTTTAGTTCATCGCTTTC 57.050 30.769 0.00 0.00 0.00 2.62
1712 1766 3.309121 CCCATTACTGACAGATTTGGGGT 60.309 47.826 22.81 0.63 38.92 4.95
1727 1781 1.783979 TGGGGTTTTACTGGTGGTGAT 59.216 47.619 0.00 0.00 0.00 3.06
1789 1843 5.127356 CCCTCCGTCCTACAATATAAGATCC 59.873 48.000 0.00 0.00 0.00 3.36
1821 1875 0.706433 TGTTAGACGGAGGGGGTACT 59.294 55.000 0.00 0.00 0.00 2.73
1881 1936 2.228822 CCGCTGTTACCATTCAAGCTTT 59.771 45.455 0.00 0.00 0.00 3.51
1883 1938 4.298332 CGCTGTTACCATTCAAGCTTTTT 58.702 39.130 0.00 0.00 0.00 1.94
1884 1939 5.457140 CGCTGTTACCATTCAAGCTTTTTA 58.543 37.500 0.00 0.00 0.00 1.52
1885 1940 5.918011 CGCTGTTACCATTCAAGCTTTTTAA 59.082 36.000 0.00 0.00 0.00 1.52
1886 1941 6.088085 CGCTGTTACCATTCAAGCTTTTTAAG 59.912 38.462 0.00 0.00 0.00 1.85
1887 1942 7.145323 GCTGTTACCATTCAAGCTTTTTAAGA 58.855 34.615 0.00 0.00 0.00 2.10
1889 1944 9.346725 CTGTTACCATTCAAGCTTTTTAAGATC 57.653 33.333 0.00 0.00 0.00 2.75
1890 1945 8.855110 TGTTACCATTCAAGCTTTTTAAGATCA 58.145 29.630 0.00 0.00 0.00 2.92
1891 1946 9.860898 GTTACCATTCAAGCTTTTTAAGATCAT 57.139 29.630 0.00 0.00 0.00 2.45
1894 1949 7.178983 ACCATTCAAGCTTTTTAAGATCATCCA 59.821 33.333 0.00 0.00 0.00 3.41
1895 1950 7.490402 CCATTCAAGCTTTTTAAGATCATCCAC 59.510 37.037 0.00 0.00 0.00 4.02
1896 1951 6.182039 TCAAGCTTTTTAAGATCATCCACG 57.818 37.500 0.00 0.00 0.00 4.94
1897 1952 5.123820 TCAAGCTTTTTAAGATCATCCACGG 59.876 40.000 0.00 0.00 0.00 4.94
1898 1953 4.843728 AGCTTTTTAAGATCATCCACGGA 58.156 39.130 0.00 0.00 0.00 4.69
1899 1954 5.253330 AGCTTTTTAAGATCATCCACGGAA 58.747 37.500 0.00 0.00 0.00 4.30
1900 1955 5.123979 AGCTTTTTAAGATCATCCACGGAAC 59.876 40.000 0.00 0.00 0.00 3.62
1999 2142 5.664294 TTATTCTGTTGGCATTGCTGATT 57.336 34.783 8.82 0.36 0.00 2.57
2427 2570 1.214175 TCCTCTTTGTTCCTGTTGCCA 59.786 47.619 0.00 0.00 0.00 4.92
2483 2727 9.888878 GAATCACCATGTTATATGAAGTGAATG 57.111 33.333 5.51 0.00 36.46 2.67
2714 2959 0.109086 CGCTCCTATGCCCGTGATAG 60.109 60.000 0.00 0.00 0.00 2.08
2725 2970 2.213499 CCCGTGATAGCATCTGTTTCC 58.787 52.381 0.00 0.00 0.00 3.13
2784 3029 4.005650 CCTGTGCCTATGCTAACATATGG 58.994 47.826 7.80 0.00 38.10 2.74
2930 3175 4.831314 TCCTCCTCCAATGATGATTCCTA 58.169 43.478 0.00 0.00 0.00 2.94
2961 3206 2.096248 TGTCCAAGCAGTTTTTCCGTT 58.904 42.857 0.00 0.00 0.00 4.44
3163 3408 1.649815 CAACGGTGTTGCGCCTAAA 59.350 52.632 4.18 0.00 0.00 1.85
3286 3531 3.895232 TGATTCTGTGGCTAGACCTTC 57.105 47.619 0.00 0.00 40.22 3.46
3422 3667 5.250313 TGTTTTGCCCTATTGATTTTCCCAT 59.750 36.000 0.00 0.00 0.00 4.00
3487 3732 7.328982 TGCACTTACATTTCTGCACATAATTTG 59.671 33.333 0.00 0.00 34.73 2.32
3512 3762 5.050490 GCGCCTTCTGAGTATAAATCTCAA 58.950 41.667 0.00 0.00 40.68 3.02
3568 3821 3.519510 TCTTTCTTGTGGATGAGGTAGGG 59.480 47.826 0.00 0.00 0.00 3.53
3581 3834 5.138758 TGAGGTAGGGTTGAGCTATCTTA 57.861 43.478 0.00 0.00 0.00 2.10
3733 3994 7.136822 AGTGGCTTATGATTATTGTCCTACA 57.863 36.000 0.00 0.00 0.00 2.74
3757 4019 1.318158 GCATGTCTGCTTTCCCAGGG 61.318 60.000 0.00 0.00 45.32 4.45
3762 4024 1.305549 CTGCTTTCCCAGGGCCATT 60.306 57.895 6.18 0.00 0.00 3.16
3771 4033 0.106719 CCAGGGCCATTGGATACGTT 60.107 55.000 18.29 0.00 37.96 3.99
3789 5327 2.480419 CGTTGTAGCAAGACTTCCCTTG 59.520 50.000 0.00 0.00 44.67 3.61
3875 5413 7.803279 TTCTCGTAAGCATCTATAGACTTCA 57.197 36.000 4.10 0.00 37.18 3.02
3944 5482 2.894763 TTATCCGTATGGGTCGGTTG 57.105 50.000 0.00 0.00 46.86 3.77
3958 5496 0.958876 CGGTTGTAGGGGCTTTGTCC 60.959 60.000 0.00 0.00 0.00 4.02
3990 5528 2.884146 CAAACATTGCCCGTGTGTG 58.116 52.632 0.00 0.00 0.00 3.82
4039 5685 7.411804 GGCCAATTTTTCACAATTTAGACATCG 60.412 37.037 0.00 0.00 0.00 3.84
4081 5728 6.908284 CCAAATGAAAAGAAACTTTGCACATG 59.092 34.615 7.01 8.74 0.00 3.21
4198 5846 6.597672 TGTGTCCACATATAGTCAACCAAATC 59.402 38.462 0.00 0.00 36.21 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 299 7.719761 GAACAAGTTCTAGGGTTTTCCCCGA 62.720 48.000 5.72 0.0 46.94 5.14
299 305 3.483421 CCCGAACAAGTTCTAGGGTTTT 58.517 45.455 14.31 0.0 36.26 2.43
460 466 7.673180 AGAAAATGAAAGAGAAATGAATGCCA 58.327 30.769 0.00 0.0 0.00 4.92
708 721 4.262635 CCAGATAGTATTGTACAGCCTGGG 60.263 50.000 0.00 0.0 37.12 4.45
724 737 3.118482 AGTCAAGACATGCCACCAGATAG 60.118 47.826 2.72 0.0 0.00 2.08
775 817 1.597742 ATGTGCTGGCGGTGATATTC 58.402 50.000 0.00 0.0 0.00 1.75
1248 1294 0.467290 GCTTCCTGTGGGGTTTGTCA 60.467 55.000 0.00 0.0 36.25 3.58
1288 1334 2.632537 AGGCTAAACAGGGGAGAGAAA 58.367 47.619 0.00 0.0 0.00 2.52
1308 1354 6.996180 AATAAAGAATCTCATCTCCCCGTA 57.004 37.500 0.00 0.0 0.00 4.02
1309 1355 5.896073 AATAAAGAATCTCATCTCCCCGT 57.104 39.130 0.00 0.0 0.00 5.28
1310 1356 5.471456 CCAAATAAAGAATCTCATCTCCCCG 59.529 44.000 0.00 0.0 0.00 5.73
1311 1357 6.368805 ACCAAATAAAGAATCTCATCTCCCC 58.631 40.000 0.00 0.0 0.00 4.81
1329 1376 4.081531 CCTCCATACAACATGCAACCAAAT 60.082 41.667 0.00 0.0 0.00 2.32
1333 1380 2.164219 CACCTCCATACAACATGCAACC 59.836 50.000 0.00 0.0 0.00 3.77
1342 1389 4.673968 ACAGAGACTACACCTCCATACAA 58.326 43.478 0.00 0.0 0.00 2.41
1377 1424 2.890808 TCATAGGGCGATCAGAACAC 57.109 50.000 0.00 0.0 0.00 3.32
1584 1638 5.387958 GCATCGTAAACCAAACAAAAATCCG 60.388 40.000 0.00 0.0 0.00 4.18
1683 1737 4.207891 TCTGTCAGTAATGGGAGAAAGC 57.792 45.455 0.00 0.0 0.00 3.51
1712 1766 2.773487 CACCGATCACCACCAGTAAAA 58.227 47.619 0.00 0.0 0.00 1.52
1727 1781 0.880278 GAAGCAGTCACAAGCACCGA 60.880 55.000 0.00 0.0 0.00 4.69
1789 1843 6.183360 CCTCCGTCTAACATAGCTTGAAAAAG 60.183 42.308 0.00 0.0 0.00 2.27
1881 1936 4.900684 TGTGTTCCGTGGATGATCTTAAA 58.099 39.130 0.00 0.0 0.00 1.52
1883 1938 4.441792 CATGTGTTCCGTGGATGATCTTA 58.558 43.478 0.00 0.0 0.00 2.10
1884 1939 3.273434 CATGTGTTCCGTGGATGATCTT 58.727 45.455 0.00 0.0 0.00 2.40
1885 1940 2.910199 CATGTGTTCCGTGGATGATCT 58.090 47.619 0.00 0.0 0.00 2.75
1894 1949 1.327303 ATGCAAACCATGTGTTCCGT 58.673 45.000 0.00 0.0 35.67 4.69
1895 1950 2.030007 AGAATGCAAACCATGTGTTCCG 60.030 45.455 0.00 0.0 35.67 4.30
1896 1951 3.665745 AGAATGCAAACCATGTGTTCC 57.334 42.857 0.00 0.0 35.67 3.62
1897 1952 5.989551 AAAAGAATGCAAACCATGTGTTC 57.010 34.783 0.00 0.0 35.67 3.18
1898 1953 7.498570 ACATTAAAAGAATGCAAACCATGTGTT 59.501 29.630 0.00 0.0 39.43 3.32
1899 1954 6.991531 ACATTAAAAGAATGCAAACCATGTGT 59.008 30.769 0.00 0.0 33.49 3.72
1900 1955 7.041916 ACACATTAAAAGAATGCAAACCATGTG 60.042 33.333 13.90 13.9 42.19 3.21
1969 2112 6.202570 GCAATGCCAACAGAATAAAGAACAAA 59.797 34.615 0.00 0.0 0.00 2.83
2427 2570 8.505625 GCTAACAGCTATACGAGAACTTACTAT 58.494 37.037 0.00 0.0 38.45 2.12
2714 2959 1.305930 GGTGGGACGGAAACAGATGC 61.306 60.000 0.00 0.0 0.00 3.91
2784 3029 2.281345 CTGGCGATGGGGCTGATC 60.281 66.667 0.00 0.0 41.85 2.92
2930 3175 1.977854 TGCTTGGACATAGTGAGGTGT 59.022 47.619 0.00 0.0 0.00 4.16
3286 3531 8.677148 AATAGCTAAGGGTTACATACACATTG 57.323 34.615 0.00 0.0 30.22 2.82
3422 3667 8.359642 TGTCATGTATGAGAATCGATGTGAATA 58.640 33.333 0.00 0.0 38.61 1.75
3487 3732 4.372656 AGATTTATACTCAGAAGGCGCAC 58.627 43.478 10.83 0.0 0.00 5.34
3512 3762 7.892241 TGATACTACTGTTGTAGAGGTAACCTT 59.108 37.037 9.79 0.0 46.76 3.50
3674 3934 4.686091 TGCAACTCAGAACAGATACGAAAG 59.314 41.667 0.00 0.0 0.00 2.62
3757 4019 2.285083 TGCTACAACGTATCCAATGGC 58.715 47.619 0.00 0.0 0.00 4.40
3762 4024 4.491676 GAAGTCTTGCTACAACGTATCCA 58.508 43.478 0.00 0.0 0.00 3.41
3789 5327 0.308993 GTTAGATCTTGGCCATGCGC 59.691 55.000 6.09 0.0 0.00 6.09
3844 5382 8.129840 TCTATAGATGCTTACGAGAAAGACAAC 58.870 37.037 0.00 0.0 0.00 3.32
3850 5388 8.221965 TGAAGTCTATAGATGCTTACGAGAAA 57.778 34.615 5.57 0.0 0.00 2.52
3875 5413 3.876309 TGGAGTTGGCCTTAGAAGTTT 57.124 42.857 3.32 0.0 0.00 2.66
3944 5482 0.323957 AGAACGGACAAAGCCCCTAC 59.676 55.000 0.00 0.0 0.00 3.18
3958 5496 0.110867 TGTTTGCGCGAATGAGAACG 60.111 50.000 14.34 0.0 0.00 3.95
4013 5659 7.411804 CGATGTCTAAATTGTGAAAAATTGGCC 60.412 37.037 0.00 0.0 30.21 5.36
4019 5665 8.293157 TGCATACGATGTCTAAATTGTGAAAAA 58.707 29.630 0.00 0.0 0.00 1.94
4052 5699 8.825745 GTGCAAAGTTTCTTTTCATTTGGATTA 58.174 29.630 0.00 0.0 34.46 1.75
4175 5823 6.716284 TGATTTGGTTGACTATATGTGGACA 58.284 36.000 0.00 0.0 0.00 4.02
4198 5846 6.201517 ACGACTCACATTCAACTTCAAAATG 58.798 36.000 0.00 0.0 36.64 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.