Multiple sequence alignment - TraesCS7B01G206200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G206200 chr7B 100.000 2597 0 0 1 2597 377136891 377134295 0.000000e+00 4796.0
1 TraesCS7B01G206200 chr7B 85.714 168 20 3 506 670 736300300 736300466 9.550000e-40 174.0
2 TraesCS7B01G206200 chr7A 95.815 1123 34 5 755 1870 430814892 430813776 0.000000e+00 1801.0
3 TraesCS7B01G206200 chr7A 91.250 400 23 8 118 509 430815288 430814893 3.800000e-148 534.0
4 TraesCS7B01G206200 chr7A 90.411 146 6 3 1869 2007 430813706 430813562 4.410000e-43 185.0
5 TraesCS7B01G206200 chr7A 88.816 152 16 1 500 651 727851116 727851266 4.410000e-43 185.0
6 TraesCS7B01G206200 chr7D 94.375 1120 31 6 755 1865 382755607 382754511 0.000000e+00 1690.0
7 TraesCS7B01G206200 chr7D 92.109 659 48 4 1869 2526 382754469 382753814 0.000000e+00 926.0
8 TraesCS7B01G206200 chr7D 91.778 523 17 20 7 509 382756124 382755608 0.000000e+00 704.0
9 TraesCS7B01G206200 chr2D 83.037 507 83 3 1074 1580 55764775 55764272 8.470000e-125 457.0
10 TraesCS7B01G206200 chr2D 100.000 31 0 0 736 766 555158721 555158691 1.000000e-04 58.4
11 TraesCS7B01G206200 chr2B 83.137 510 77 6 1074 1580 88434962 88434459 8.470000e-125 457.0
12 TraesCS7B01G206200 chr2A 83.037 507 83 3 1074 1580 57176228 57175725 8.470000e-125 457.0
13 TraesCS7B01G206200 chr4A 84.400 250 34 3 508 756 360514895 360514650 9.290000e-60 241.0
14 TraesCS7B01G206200 chr5D 90.541 148 13 1 507 654 537178350 537178204 7.330000e-46 195.0
15 TraesCS7B01G206200 chr5D 92.857 98 6 1 650 747 264736079 264735983 9.690000e-30 141.0
16 TraesCS7B01G206200 chr5D 92.784 97 6 1 650 746 347656118 347656213 3.480000e-29 139.0
17 TraesCS7B01G206200 chr5D 91.089 101 8 1 647 746 502881628 502881728 4.510000e-28 135.0
18 TraesCS7B01G206200 chr5A 90.476 147 12 2 505 651 150983371 150983515 2.640000e-45 193.0
19 TraesCS7B01G206200 chr5A 87.261 157 19 1 495 651 529087079 529087234 7.390000e-41 178.0
20 TraesCS7B01G206200 chrUn 89.796 147 14 1 508 654 31220657 31220512 1.230000e-43 187.0
21 TraesCS7B01G206200 chrUn 93.548 93 6 0 650 742 67634375 67634467 3.480000e-29 139.0
22 TraesCS7B01G206200 chr3D 89.333 150 13 3 503 651 90685554 90685701 4.410000e-43 185.0
23 TraesCS7B01G206200 chr3D 89.189 148 14 2 504 651 238999411 238999556 1.590000e-42 183.0
24 TraesCS7B01G206200 chr3D 100.000 31 0 0 736 766 38212380 38212410 1.000000e-04 58.4
25 TraesCS7B01G206200 chr3D 100.000 31 0 0 736 766 341659433 341659463 1.000000e-04 58.4
26 TraesCS7B01G206200 chr3D 100.000 29 0 0 734 762 207268557 207268585 1.000000e-03 54.7
27 TraesCS7B01G206200 chr4B 89.844 128 8 3 629 756 32905009 32904887 2.670000e-35 159.0
28 TraesCS7B01G206200 chr1D 93.548 93 6 0 650 742 135048119 135048027 3.480000e-29 139.0
29 TraesCS7B01G206200 chr4D 91.837 98 7 1 650 747 262040865 262040769 4.510000e-28 135.0
30 TraesCS7B01G206200 chr4D 83.333 90 9 6 9 97 162897085 162897169 7.710000e-11 78.7
31 TraesCS7B01G206200 chr3A 100.000 31 0 0 736 766 511553398 511553428 1.000000e-04 58.4
32 TraesCS7B01G206200 chr1B 100.000 31 0 0 736 766 80041291 80041321 1.000000e-04 58.4
33 TraesCS7B01G206200 chr5B 100.000 29 0 0 738 766 249334004 249334032 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G206200 chr7B 377134295 377136891 2596 True 4796.000000 4796 100.000 1 2597 1 chr7B.!!$R1 2596
1 TraesCS7B01G206200 chr7A 430813562 430815288 1726 True 840.000000 1801 92.492 118 2007 3 chr7A.!!$R1 1889
2 TraesCS7B01G206200 chr7D 382753814 382756124 2310 True 1106.666667 1690 92.754 7 2526 3 chr7D.!!$R1 2519
3 TraesCS7B01G206200 chr2D 55764272 55764775 503 True 457.000000 457 83.037 1074 1580 1 chr2D.!!$R1 506
4 TraesCS7B01G206200 chr2B 88434459 88434962 503 True 457.000000 457 83.137 1074 1580 1 chr2B.!!$R1 506
5 TraesCS7B01G206200 chr2A 57175725 57176228 503 True 457.000000 457 83.037 1074 1580 1 chr2A.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 966 1.369091 GCGCTCGACCCATCAAACAT 61.369 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2416 2544 0.174845 TCTTGACGCCTATTGTCCCG 59.825 55.0 0.0 0.0 35.46 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.577848 TCTGGTAAAAGTTGCAATGCCAT 59.422 39.130 0.59 0.00 0.00 4.40
73 74 2.042297 TGGCTCAATAATTGGTGGGTGA 59.958 45.455 0.00 0.00 0.00 4.02
77 78 4.021544 GCTCAATAATTGGTGGGTGAAACA 60.022 41.667 0.00 0.00 39.98 2.83
146 171 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
509 547 7.133891 GGAACCATGCATGAATGTATAGTAC 57.866 40.000 28.31 7.59 31.75 2.73
510 548 6.936900 GGAACCATGCATGAATGTATAGTACT 59.063 38.462 28.31 0.00 31.75 2.73
511 549 7.118390 GGAACCATGCATGAATGTATAGTACTC 59.882 40.741 28.31 9.37 31.75 2.59
512 550 6.467677 ACCATGCATGAATGTATAGTACTCC 58.532 40.000 28.31 0.00 31.75 3.85
513 551 5.877012 CCATGCATGAATGTATAGTACTCCC 59.123 44.000 28.31 0.00 31.75 4.30
514 552 6.296087 CCATGCATGAATGTATAGTACTCCCT 60.296 42.308 28.31 0.00 31.75 4.20
515 553 6.346477 TGCATGAATGTATAGTACTCCCTC 57.654 41.667 0.00 0.00 0.00 4.30
516 554 6.077993 TGCATGAATGTATAGTACTCCCTCT 58.922 40.000 0.00 0.00 0.00 3.69
517 555 6.015095 TGCATGAATGTATAGTACTCCCTCTG 60.015 42.308 0.00 0.00 0.00 3.35
518 556 6.015010 GCATGAATGTATAGTACTCCCTCTGT 60.015 42.308 0.00 0.00 0.00 3.41
519 557 7.472100 GCATGAATGTATAGTACTCCCTCTGTT 60.472 40.741 0.00 0.00 0.00 3.16
520 558 7.584122 TGAATGTATAGTACTCCCTCTGTTC 57.416 40.000 0.00 0.00 0.00 3.18
521 559 7.355101 TGAATGTATAGTACTCCCTCTGTTCT 58.645 38.462 0.00 0.00 0.00 3.01
522 560 7.839705 TGAATGTATAGTACTCCCTCTGTTCTT 59.160 37.037 0.00 0.00 0.00 2.52
523 561 9.352191 GAATGTATAGTACTCCCTCTGTTCTTA 57.648 37.037 0.00 0.00 0.00 2.10
524 562 9.710818 AATGTATAGTACTCCCTCTGTTCTTAA 57.289 33.333 0.00 0.00 0.00 1.85
525 563 9.710818 ATGTATAGTACTCCCTCTGTTCTTAAA 57.289 33.333 0.00 0.00 0.00 1.52
526 564 9.710818 TGTATAGTACTCCCTCTGTTCTTAAAT 57.289 33.333 0.00 0.00 0.00 1.40
534 572 9.495382 ACTCCCTCTGTTCTTAAATATAAGTCT 57.505 33.333 0.00 0.00 39.65 3.24
589 627 9.407380 TGGATGTATGTAAATGCATTTTAGAGT 57.593 29.630 28.45 13.40 30.46 3.24
590 628 9.669353 GGATGTATGTAAATGCATTTTAGAGTG 57.331 33.333 28.45 0.00 30.46 3.51
611 649 7.138692 AGTGTAGATTCACTCATTTTTGCTC 57.861 36.000 0.00 0.00 44.07 4.26
612 650 6.939163 AGTGTAGATTCACTCATTTTTGCTCT 59.061 34.615 0.00 0.00 44.07 4.09
613 651 7.020010 GTGTAGATTCACTCATTTTTGCTCTG 58.980 38.462 0.00 0.00 35.68 3.35
614 652 6.712095 TGTAGATTCACTCATTTTTGCTCTGT 59.288 34.615 0.00 0.00 0.00 3.41
615 653 7.877612 TGTAGATTCACTCATTTTTGCTCTGTA 59.122 33.333 0.00 0.00 0.00 2.74
616 654 7.934855 AGATTCACTCATTTTTGCTCTGTAT 57.065 32.000 0.00 0.00 0.00 2.29
617 655 7.759465 AGATTCACTCATTTTTGCTCTGTATG 58.241 34.615 0.00 0.00 0.00 2.39
618 656 6.882610 TTCACTCATTTTTGCTCTGTATGT 57.117 33.333 0.00 0.00 0.00 2.29
619 657 7.977789 TTCACTCATTTTTGCTCTGTATGTA 57.022 32.000 0.00 0.00 0.00 2.29
620 658 7.601073 TCACTCATTTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
621 659 7.161404 TCACTCATTTTTGCTCTGTATGTAGT 58.839 34.615 0.00 0.00 0.00 2.73
622 660 7.661437 TCACTCATTTTTGCTCTGTATGTAGTT 59.339 33.333 0.00 0.00 0.00 2.24
623 661 7.959651 CACTCATTTTTGCTCTGTATGTAGTTC 59.040 37.037 0.00 0.00 0.00 3.01
624 662 7.060600 TCATTTTTGCTCTGTATGTAGTTCG 57.939 36.000 0.00 0.00 0.00 3.95
625 663 6.649141 TCATTTTTGCTCTGTATGTAGTTCGT 59.351 34.615 0.00 0.00 0.00 3.85
626 664 7.815549 TCATTTTTGCTCTGTATGTAGTTCGTA 59.184 33.333 0.00 0.00 0.00 3.43
627 665 7.576750 TTTTTGCTCTGTATGTAGTTCGTAG 57.423 36.000 0.00 0.00 0.00 3.51
628 666 5.892160 TTGCTCTGTATGTAGTTCGTAGT 57.108 39.130 0.00 0.00 0.00 2.73
629 667 5.231265 TGCTCTGTATGTAGTTCGTAGTG 57.769 43.478 0.00 0.00 0.00 2.74
630 668 4.939439 TGCTCTGTATGTAGTTCGTAGTGA 59.061 41.667 0.00 0.00 0.00 3.41
631 669 5.413523 TGCTCTGTATGTAGTTCGTAGTGAA 59.586 40.000 0.00 0.00 0.00 3.18
632 670 6.072342 TGCTCTGTATGTAGTTCGTAGTGAAA 60.072 38.462 0.00 0.00 38.60 2.69
633 671 6.973474 GCTCTGTATGTAGTTCGTAGTGAAAT 59.027 38.462 0.00 0.00 38.60 2.17
634 672 7.166142 GCTCTGTATGTAGTTCGTAGTGAAATC 59.834 40.741 0.00 0.00 38.60 2.17
635 673 8.277490 TCTGTATGTAGTTCGTAGTGAAATCT 57.723 34.615 0.00 0.00 38.60 2.40
636 674 8.396390 TCTGTATGTAGTTCGTAGTGAAATCTC 58.604 37.037 0.00 0.00 38.60 2.75
637 675 8.277490 TGTATGTAGTTCGTAGTGAAATCTCT 57.723 34.615 0.00 0.00 38.60 3.10
638 676 9.387257 TGTATGTAGTTCGTAGTGAAATCTCTA 57.613 33.333 0.00 0.00 38.60 2.43
639 677 9.866936 GTATGTAGTTCGTAGTGAAATCTCTAG 57.133 37.037 0.00 0.00 38.60 2.43
640 678 8.734218 ATGTAGTTCGTAGTGAAATCTCTAGA 57.266 34.615 0.00 0.00 38.60 2.43
641 679 8.557592 TGTAGTTCGTAGTGAAATCTCTAGAA 57.442 34.615 0.00 0.00 38.60 2.10
642 680 9.006839 TGTAGTTCGTAGTGAAATCTCTAGAAA 57.993 33.333 0.00 0.00 38.60 2.52
643 681 9.837525 GTAGTTCGTAGTGAAATCTCTAGAAAA 57.162 33.333 0.00 0.00 38.60 2.29
645 683 9.194271 AGTTCGTAGTGAAATCTCTAGAAAAAC 57.806 33.333 0.00 0.00 38.60 2.43
646 684 9.194271 GTTCGTAGTGAAATCTCTAGAAAAACT 57.806 33.333 0.00 0.00 38.60 2.66
647 685 9.760077 TTCGTAGTGAAATCTCTAGAAAAACTT 57.240 29.630 0.00 0.00 32.37 2.66
662 700 9.589111 CTAGAAAAACTTATACTTCCTCTGTCC 57.411 37.037 0.00 0.00 0.00 4.02
663 701 7.395617 AGAAAAACTTATACTTCCTCTGTCCC 58.604 38.462 0.00 0.00 0.00 4.46
664 702 6.697641 AAAACTTATACTTCCTCTGTCCCA 57.302 37.500 0.00 0.00 0.00 4.37
665 703 6.697641 AAACTTATACTTCCTCTGTCCCAA 57.302 37.500 0.00 0.00 0.00 4.12
666 704 6.697641 AACTTATACTTCCTCTGTCCCAAA 57.302 37.500 0.00 0.00 0.00 3.28
667 705 6.697641 ACTTATACTTCCTCTGTCCCAAAA 57.302 37.500 0.00 0.00 0.00 2.44
668 706 7.272144 ACTTATACTTCCTCTGTCCCAAAAT 57.728 36.000 0.00 0.00 0.00 1.82
669 707 8.388656 ACTTATACTTCCTCTGTCCCAAAATA 57.611 34.615 0.00 0.00 0.00 1.40
670 708 9.004231 ACTTATACTTCCTCTGTCCCAAAATAT 57.996 33.333 0.00 0.00 0.00 1.28
674 712 7.510675 ACTTCCTCTGTCCCAAAATATAAGA 57.489 36.000 0.00 0.00 0.00 2.10
675 713 7.928873 ACTTCCTCTGTCCCAAAATATAAGAA 58.071 34.615 0.00 0.00 0.00 2.52
676 714 7.829706 ACTTCCTCTGTCCCAAAATATAAGAAC 59.170 37.037 0.00 0.00 0.00 3.01
677 715 6.346096 TCCTCTGTCCCAAAATATAAGAACG 58.654 40.000 0.00 0.00 0.00 3.95
678 716 6.070424 TCCTCTGTCCCAAAATATAAGAACGT 60.070 38.462 0.00 0.00 0.00 3.99
679 717 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
680 718 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
681 719 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
682 720 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
725 763 8.721019 AAAAACGTTCTTATATTATGGGACGA 57.279 30.769 0.00 0.00 0.00 4.20
726 764 8.721019 AAAACGTTCTTATATTATGGGACGAA 57.279 30.769 0.00 0.00 0.00 3.85
727 765 7.941795 AACGTTCTTATATTATGGGACGAAG 57.058 36.000 14.76 0.00 0.00 3.79
728 766 6.453092 ACGTTCTTATATTATGGGACGAAGG 58.547 40.000 14.76 0.00 0.00 3.46
729 767 6.266103 ACGTTCTTATATTATGGGACGAAGGA 59.734 38.462 14.76 0.00 0.00 3.36
730 768 7.149973 CGTTCTTATATTATGGGACGAAGGAA 58.850 38.462 0.00 0.00 0.00 3.36
731 769 7.328737 CGTTCTTATATTATGGGACGAAGGAAG 59.671 40.741 0.00 0.00 0.00 3.46
732 770 7.850935 TCTTATATTATGGGACGAAGGAAGT 57.149 36.000 0.00 0.00 0.00 3.01
733 771 8.945195 TCTTATATTATGGGACGAAGGAAGTA 57.055 34.615 0.00 0.00 0.00 2.24
734 772 9.021807 TCTTATATTATGGGACGAAGGAAGTAG 57.978 37.037 0.00 0.00 0.00 2.57
735 773 8.716674 TTATATTATGGGACGAAGGAAGTAGT 57.283 34.615 0.00 0.00 0.00 2.73
736 774 9.812347 TTATATTATGGGACGAAGGAAGTAGTA 57.188 33.333 0.00 0.00 0.00 1.82
737 775 8.896722 ATATTATGGGACGAAGGAAGTAGTAT 57.103 34.615 0.00 0.00 0.00 2.12
738 776 7.613551 ATTATGGGACGAAGGAAGTAGTATT 57.386 36.000 0.00 0.00 0.00 1.89
739 777 5.952347 ATGGGACGAAGGAAGTAGTATTT 57.048 39.130 0.00 0.00 0.00 1.40
740 778 8.537728 TTATGGGACGAAGGAAGTAGTATTTA 57.462 34.615 0.00 0.00 0.00 1.40
741 779 6.461110 TGGGACGAAGGAAGTAGTATTTAG 57.539 41.667 0.00 0.00 0.00 1.85
742 780 5.361857 TGGGACGAAGGAAGTAGTATTTAGG 59.638 44.000 0.00 0.00 0.00 2.69
743 781 5.595952 GGGACGAAGGAAGTAGTATTTAGGA 59.404 44.000 0.00 0.00 0.00 2.94
744 782 6.097412 GGGACGAAGGAAGTAGTATTTAGGAA 59.903 42.308 0.00 0.00 0.00 3.36
745 783 6.977502 GGACGAAGGAAGTAGTATTTAGGAAC 59.022 42.308 0.00 0.00 0.00 3.62
746 784 6.558909 ACGAAGGAAGTAGTATTTAGGAACG 58.441 40.000 0.00 0.00 0.00 3.95
747 785 5.975939 CGAAGGAAGTAGTATTTAGGAACGG 59.024 44.000 0.00 0.00 0.00 4.44
748 786 6.183360 CGAAGGAAGTAGTATTTAGGAACGGA 60.183 42.308 0.00 0.00 0.00 4.69
749 787 6.712179 AGGAAGTAGTATTTAGGAACGGAG 57.288 41.667 0.00 0.00 0.00 4.63
750 788 5.597594 AGGAAGTAGTATTTAGGAACGGAGG 59.402 44.000 0.00 0.00 0.00 4.30
751 789 5.221402 GGAAGTAGTATTTAGGAACGGAGGG 60.221 48.000 0.00 0.00 0.00 4.30
752 790 5.134725 AGTAGTATTTAGGAACGGAGGGA 57.865 43.478 0.00 0.00 0.00 4.20
753 791 5.139001 AGTAGTATTTAGGAACGGAGGGAG 58.861 45.833 0.00 0.00 0.00 4.30
760 798 3.967467 AGGAACGGAGGGAGTAGAATA 57.033 47.619 0.00 0.00 0.00 1.75
779 817 9.127277 GTAGAATATTAGGTTGGTGGCATTTTA 57.873 33.333 0.00 0.00 0.00 1.52
889 927 3.870633 TTTTAGGCCACGTGTTGTTTT 57.129 38.095 15.65 0.00 0.00 2.43
928 966 1.369091 GCGCTCGACCCATCAAACAT 61.369 55.000 0.00 0.00 0.00 2.71
1044 1085 2.315386 GGTGGTGAAGCCGTCGTTC 61.315 63.158 0.00 0.00 41.21 3.95
1045 1086 2.029964 TGGTGAAGCCGTCGTTCC 59.970 61.111 0.00 0.00 41.21 3.62
1046 1087 2.741211 GGTGAAGCCGTCGTTCCC 60.741 66.667 0.00 0.00 0.00 3.97
1047 1088 2.741211 GTGAAGCCGTCGTTCCCC 60.741 66.667 0.00 0.00 0.00 4.81
1048 1089 3.235481 TGAAGCCGTCGTTCCCCA 61.235 61.111 0.00 0.00 0.00 4.96
1049 1090 2.741211 GAAGCCGTCGTTCCCCAC 60.741 66.667 0.00 0.00 0.00 4.61
1050 1091 4.324991 AAGCCGTCGTTCCCCACC 62.325 66.667 0.00 0.00 0.00 4.61
1054 1095 2.417257 CCGTCGTTCCCCACCGATA 61.417 63.158 0.00 0.00 35.30 2.92
1092 1133 1.445582 GTCGTTCCGTCTCCGCAAT 60.446 57.895 0.00 0.00 0.00 3.56
1296 1337 0.616111 AGGACTTCGAGTGCCTCCAT 60.616 55.000 3.60 0.00 37.25 3.41
1726 1768 2.364632 TGGTTGCTATGTACATGTGCC 58.635 47.619 23.58 16.29 0.00 5.01
1746 1788 7.874940 TGTGCCTATATCTTTTATTCATGTGC 58.125 34.615 0.00 0.00 0.00 4.57
1867 1918 2.058057 CCAAGGAAAACATTTTCGGCG 58.942 47.619 0.00 0.00 45.68 6.46
2064 2192 7.552050 AACAAGTCATTTTATGATTTCCCCA 57.448 32.000 0.00 0.00 42.04 4.96
2090 2218 8.954350 AGAGGATGCAAATGCTCATATTATTAC 58.046 33.333 10.91 0.00 40.85 1.89
2186 2314 7.226325 ACGTATGGATCTACAGTTCTACACTAC 59.774 40.741 0.00 0.00 32.76 2.73
2199 2327 8.477709 CAGTTCTACACTACGTTTCTAAAGTTG 58.522 37.037 0.00 0.00 32.76 3.16
2214 2342 8.698973 TTCTAAAGTTGGGTCAACATATCAAA 57.301 30.769 12.46 0.00 45.66 2.69
2218 2346 6.575162 AGTTGGGTCAACATATCAAAACTC 57.425 37.500 12.46 0.00 45.66 3.01
2239 2367 9.872721 AAACTCTAAAAACCTACTATCAGCTAC 57.127 33.333 0.00 0.00 0.00 3.58
2259 2387 6.599437 GCTACAAAGAGCTATTTTTCGACAA 58.401 36.000 2.96 0.00 39.50 3.18
2260 2388 7.244192 GCTACAAAGAGCTATTTTTCGACAAT 58.756 34.615 2.96 0.00 39.50 2.71
2261 2389 7.217070 GCTACAAAGAGCTATTTTTCGACAATG 59.783 37.037 2.96 0.00 39.50 2.82
2283 2411 9.311916 CAATGTTGAGTAATTTCAAAAACCTCA 57.688 29.630 0.00 0.00 38.69 3.86
2286 2414 7.860373 TGTTGAGTAATTTCAAAAACCTCATCG 59.140 33.333 0.00 0.00 38.69 3.84
2299 2427 4.724074 ACCTCATCGTCGTAAATACCAA 57.276 40.909 0.00 0.00 0.00 3.67
2307 2435 3.542680 CGTCGTAAATACCAAACATCCGC 60.543 47.826 0.00 0.00 0.00 5.54
2318 2446 4.133820 CCAAACATCCGCCATAGATACAA 58.866 43.478 0.00 0.00 0.00 2.41
2322 2450 7.040755 CCAAACATCCGCCATAGATACAAATAA 60.041 37.037 0.00 0.00 0.00 1.40
2326 2454 9.733556 ACATCCGCCATAGATACAAATAATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2327 2455 9.988350 CATCCGCCATAGATACAAATAATTTAC 57.012 33.333 0.00 0.00 0.00 2.01
2329 2457 6.959311 CCGCCATAGATACAAATAATTTACGC 59.041 38.462 0.00 0.00 0.00 4.42
2331 2459 8.175069 CGCCATAGATACAAATAATTTACGCAT 58.825 33.333 0.00 0.00 0.00 4.73
2402 2530 3.117284 AGGTTCAGGAGAGAGGAGGATAC 60.117 52.174 0.00 0.00 0.00 2.24
2409 2537 3.008594 GGAGAGAGGAGGATACGAGATGA 59.991 52.174 0.00 0.00 46.39 2.92
2416 2544 2.747446 GAGGATACGAGATGAGAGGAGC 59.253 54.545 0.00 0.00 46.39 4.70
2428 2556 1.069935 GAGGAGCGGGACAATAGGC 59.930 63.158 0.00 0.00 0.00 3.93
2433 2561 1.448893 GCGGGACAATAGGCGTCAA 60.449 57.895 0.00 0.00 34.97 3.18
2443 2571 1.568504 TAGGCGTCAAGAGGATTGGT 58.431 50.000 0.00 0.00 0.00 3.67
2446 2574 0.798776 GCGTCAAGAGGATTGGTGTG 59.201 55.000 0.00 0.00 0.00 3.82
2459 2587 2.401766 GGTGTGGCAATGAGGAGCG 61.402 63.158 0.00 0.00 0.00 5.03
2484 2612 2.573869 CGTGACGAGGAGGCATGT 59.426 61.111 0.00 0.00 41.88 3.21
2486 2614 1.591703 GTGACGAGGAGGCATGTCA 59.408 57.895 0.00 0.00 41.88 3.58
2522 2650 1.132689 CCAATAGGAGGCTAGGGAGGT 60.133 57.143 0.00 0.00 36.89 3.85
2526 2654 0.325765 AGGAGGCTAGGGAGGTTGAC 60.326 60.000 0.00 0.00 0.00 3.18
2527 2655 1.677637 GGAGGCTAGGGAGGTTGACG 61.678 65.000 0.00 0.00 0.00 4.35
2528 2656 0.683504 GAGGCTAGGGAGGTTGACGA 60.684 60.000 0.00 0.00 0.00 4.20
2529 2657 0.684805 AGGCTAGGGAGGTTGACGAG 60.685 60.000 0.00 0.00 0.00 4.18
2530 2658 1.677637 GGCTAGGGAGGTTGACGAGG 61.678 65.000 0.00 0.00 0.00 4.63
2531 2659 0.683504 GCTAGGGAGGTTGACGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
2532 2660 1.848652 CTAGGGAGGTTGACGAGGAA 58.151 55.000 0.00 0.00 0.00 3.36
2533 2661 1.477295 CTAGGGAGGTTGACGAGGAAC 59.523 57.143 0.00 0.00 0.00 3.62
2534 2662 1.192803 AGGGAGGTTGACGAGGAACC 61.193 60.000 0.00 0.00 42.91 3.62
2535 2663 1.477685 GGGAGGTTGACGAGGAACCA 61.478 60.000 14.47 0.00 44.71 3.67
2536 2664 0.037232 GGAGGTTGACGAGGAACCAG 60.037 60.000 14.47 0.00 44.71 4.00
2537 2665 0.037232 GAGGTTGACGAGGAACCAGG 60.037 60.000 14.47 0.00 44.71 4.45
2538 2666 1.003718 GGTTGACGAGGAACCAGGG 60.004 63.158 9.24 0.00 42.26 4.45
2539 2667 1.671379 GTTGACGAGGAACCAGGGC 60.671 63.158 0.00 0.00 0.00 5.19
2540 2668 2.890766 TTGACGAGGAACCAGGGCC 61.891 63.158 0.00 0.00 0.00 5.80
2541 2669 4.452733 GACGAGGAACCAGGGCCG 62.453 72.222 0.00 0.00 0.00 6.13
2561 2689 2.449322 CCTGATGGGAGGGGAGGG 60.449 72.222 0.00 0.00 37.23 4.30
2562 2690 2.705410 CTGATGGGAGGGGAGGGA 59.295 66.667 0.00 0.00 0.00 4.20
2563 2691 1.768077 CTGATGGGAGGGGAGGGAC 60.768 68.421 0.00 0.00 0.00 4.46
2564 2692 2.844839 GATGGGAGGGGAGGGACG 60.845 72.222 0.00 0.00 0.00 4.79
2565 2693 4.499116 ATGGGAGGGGAGGGACGG 62.499 72.222 0.00 0.00 0.00 4.79
2583 2711 4.530857 CCGCCCGATGACAGGTCC 62.531 72.222 0.00 0.00 0.00 4.46
2584 2712 3.461773 CGCCCGATGACAGGTCCT 61.462 66.667 0.00 0.00 0.00 3.85
2585 2713 2.125326 CGCCCGATGACAGGTCCTA 61.125 63.158 0.00 0.00 0.00 2.94
2586 2714 1.742768 GCCCGATGACAGGTCCTAG 59.257 63.158 0.00 0.00 0.00 3.02
2587 2715 1.742768 CCCGATGACAGGTCCTAGC 59.257 63.158 0.00 0.00 0.00 3.42
2588 2716 0.757188 CCCGATGACAGGTCCTAGCT 60.757 60.000 0.00 0.00 0.00 3.32
2589 2717 1.478837 CCCGATGACAGGTCCTAGCTA 60.479 57.143 0.00 0.00 0.00 3.32
2590 2718 2.520069 CCGATGACAGGTCCTAGCTAT 58.480 52.381 0.00 0.00 0.00 2.97
2591 2719 2.894126 CCGATGACAGGTCCTAGCTATT 59.106 50.000 0.00 0.00 0.00 1.73
2592 2720 4.079970 CCGATGACAGGTCCTAGCTATTA 58.920 47.826 0.00 0.00 0.00 0.98
2593 2721 4.082679 CCGATGACAGGTCCTAGCTATTAC 60.083 50.000 0.00 0.00 0.00 1.89
2594 2722 4.762765 CGATGACAGGTCCTAGCTATTACT 59.237 45.833 0.00 0.00 0.00 2.24
2595 2723 5.335269 CGATGACAGGTCCTAGCTATTACTG 60.335 48.000 0.00 3.78 0.00 2.74
2596 2724 5.125367 TGACAGGTCCTAGCTATTACTGA 57.875 43.478 16.77 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.514309 GGTGACTAGGGAGAGCTTTTGTA 59.486 47.826 0.00 0.00 0.00 2.41
1 2 2.303311 GGTGACTAGGGAGAGCTTTTGT 59.697 50.000 0.00 0.00 0.00 2.83
2 3 2.355209 GGGTGACTAGGGAGAGCTTTTG 60.355 54.545 0.00 0.00 0.00 2.44
3 4 1.909986 GGGTGACTAGGGAGAGCTTTT 59.090 52.381 0.00 0.00 0.00 2.27
4 5 1.079658 AGGGTGACTAGGGAGAGCTTT 59.920 52.381 0.00 0.00 0.00 3.51
5 6 0.713579 AGGGTGACTAGGGAGAGCTT 59.286 55.000 0.00 0.00 0.00 3.74
52 53 2.042297 TCACCCACCAATTATTGAGCCA 59.958 45.455 6.50 0.00 0.00 4.75
73 74 4.289672 AGAGAGAGAGAGAGAGAGGTGTTT 59.710 45.833 0.00 0.00 0.00 2.83
77 78 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
146 171 3.021269 AGTCGCGACTAACATGTGAAA 57.979 42.857 38.67 0.00 40.43 2.69
397 430 5.163513 ACTCGTGCATTTGAATTCCATTTC 58.836 37.500 2.27 0.00 0.00 2.17
508 546 9.495382 AGACTTATATTTAAGAACAGAGGGAGT 57.505 33.333 9.58 0.00 38.56 3.85
563 601 9.407380 ACTCTAAAATGCATTTACATACATCCA 57.593 29.630 24.35 0.00 32.27 3.41
564 602 9.669353 CACTCTAAAATGCATTTACATACATCC 57.331 33.333 24.35 0.00 32.27 3.51
574 612 9.236006 AGTGAATCTACACTCTAAAATGCATTT 57.764 29.630 18.99 18.99 46.36 2.32
575 613 8.798859 AGTGAATCTACACTCTAAAATGCATT 57.201 30.769 5.99 5.99 46.36 3.56
588 626 7.020010 CAGAGCAAAAATGAGTGAATCTACAC 58.980 38.462 0.00 0.00 40.60 2.90
589 627 6.712095 ACAGAGCAAAAATGAGTGAATCTACA 59.288 34.615 0.00 0.00 0.00 2.74
590 628 7.138692 ACAGAGCAAAAATGAGTGAATCTAC 57.861 36.000 0.00 0.00 0.00 2.59
591 629 8.886719 CATACAGAGCAAAAATGAGTGAATCTA 58.113 33.333 0.00 0.00 0.00 1.98
592 630 7.392673 ACATACAGAGCAAAAATGAGTGAATCT 59.607 33.333 0.00 0.00 0.00 2.40
593 631 7.533426 ACATACAGAGCAAAAATGAGTGAATC 58.467 34.615 0.00 0.00 0.00 2.52
594 632 7.458409 ACATACAGAGCAAAAATGAGTGAAT 57.542 32.000 0.00 0.00 0.00 2.57
595 633 6.882610 ACATACAGAGCAAAAATGAGTGAA 57.117 33.333 0.00 0.00 0.00 3.18
596 634 7.161404 ACTACATACAGAGCAAAAATGAGTGA 58.839 34.615 0.00 0.00 0.00 3.41
597 635 7.369803 ACTACATACAGAGCAAAAATGAGTG 57.630 36.000 0.00 0.00 0.00 3.51
598 636 7.148573 CGAACTACATACAGAGCAAAAATGAGT 60.149 37.037 0.00 0.00 0.00 3.41
599 637 7.148573 ACGAACTACATACAGAGCAAAAATGAG 60.149 37.037 0.00 0.00 0.00 2.90
600 638 6.649141 ACGAACTACATACAGAGCAAAAATGA 59.351 34.615 0.00 0.00 0.00 2.57
601 639 6.831769 ACGAACTACATACAGAGCAAAAATG 58.168 36.000 0.00 0.00 0.00 2.32
602 640 7.817962 ACTACGAACTACATACAGAGCAAAAAT 59.182 33.333 0.00 0.00 0.00 1.82
603 641 7.115805 CACTACGAACTACATACAGAGCAAAAA 59.884 37.037 0.00 0.00 0.00 1.94
604 642 6.584942 CACTACGAACTACATACAGAGCAAAA 59.415 38.462 0.00 0.00 0.00 2.44
605 643 6.072342 TCACTACGAACTACATACAGAGCAAA 60.072 38.462 0.00 0.00 0.00 3.68
606 644 5.413523 TCACTACGAACTACATACAGAGCAA 59.586 40.000 0.00 0.00 0.00 3.91
607 645 4.939439 TCACTACGAACTACATACAGAGCA 59.061 41.667 0.00 0.00 0.00 4.26
608 646 5.481200 TCACTACGAACTACATACAGAGC 57.519 43.478 0.00 0.00 0.00 4.09
609 647 8.399425 AGATTTCACTACGAACTACATACAGAG 58.601 37.037 0.00 0.00 31.73 3.35
610 648 8.277490 AGATTTCACTACGAACTACATACAGA 57.723 34.615 0.00 0.00 31.73 3.41
611 649 8.399425 AGAGATTTCACTACGAACTACATACAG 58.601 37.037 0.00 0.00 31.73 2.74
612 650 8.277490 AGAGATTTCACTACGAACTACATACA 57.723 34.615 0.00 0.00 31.73 2.29
613 651 9.866936 CTAGAGATTTCACTACGAACTACATAC 57.133 37.037 0.00 0.00 31.73 2.39
614 652 9.828039 TCTAGAGATTTCACTACGAACTACATA 57.172 33.333 0.00 0.00 31.73 2.29
615 653 8.734218 TCTAGAGATTTCACTACGAACTACAT 57.266 34.615 0.00 0.00 31.73 2.29
616 654 8.557592 TTCTAGAGATTTCACTACGAACTACA 57.442 34.615 0.00 0.00 31.73 2.74
617 655 9.837525 TTTTCTAGAGATTTCACTACGAACTAC 57.162 33.333 0.00 0.00 31.73 2.73
619 657 9.194271 GTTTTTCTAGAGATTTCACTACGAACT 57.806 33.333 0.00 0.00 31.73 3.01
620 658 9.194271 AGTTTTTCTAGAGATTTCACTACGAAC 57.806 33.333 0.00 0.00 31.73 3.95
621 659 9.760077 AAGTTTTTCTAGAGATTTCACTACGAA 57.240 29.630 0.00 0.00 0.00 3.85
636 674 9.589111 GGACAGAGGAAGTATAAGTTTTTCTAG 57.411 37.037 0.00 0.00 0.00 2.43
637 675 8.537858 GGGACAGAGGAAGTATAAGTTTTTCTA 58.462 37.037 0.00 0.00 0.00 2.10
638 676 7.017254 TGGGACAGAGGAAGTATAAGTTTTTCT 59.983 37.037 0.00 0.00 0.00 2.52
639 677 7.166167 TGGGACAGAGGAAGTATAAGTTTTTC 58.834 38.462 0.00 0.00 0.00 2.29
640 678 7.086685 TGGGACAGAGGAAGTATAAGTTTTT 57.913 36.000 0.00 0.00 0.00 1.94
641 679 6.697641 TGGGACAGAGGAAGTATAAGTTTT 57.302 37.500 0.00 0.00 0.00 2.43
642 680 6.697641 TTGGGACAGAGGAAGTATAAGTTT 57.302 37.500 0.00 0.00 42.39 2.66
643 681 6.697641 TTTGGGACAGAGGAAGTATAAGTT 57.302 37.500 0.00 0.00 42.39 2.66
644 682 6.697641 TTTTGGGACAGAGGAAGTATAAGT 57.302 37.500 0.00 0.00 42.39 2.24
648 686 9.225682 TCTTATATTTTGGGACAGAGGAAGTAT 57.774 33.333 0.00 0.00 42.39 2.12
649 687 8.618240 TCTTATATTTTGGGACAGAGGAAGTA 57.382 34.615 0.00 0.00 42.39 2.24
650 688 7.510675 TCTTATATTTTGGGACAGAGGAAGT 57.489 36.000 0.00 0.00 42.39 3.01
651 689 7.011482 CGTTCTTATATTTTGGGACAGAGGAAG 59.989 40.741 0.00 0.00 42.39 3.46
652 690 6.821665 CGTTCTTATATTTTGGGACAGAGGAA 59.178 38.462 0.00 0.00 42.39 3.36
653 691 6.070424 ACGTTCTTATATTTTGGGACAGAGGA 60.070 38.462 0.00 0.00 42.39 3.71
654 692 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
655 693 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
656 694 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
699 737 9.814899 TCGTCCCATAATATAAGAACGTTTTTA 57.185 29.630 13.02 13.02 0.00 1.52
700 738 8.721019 TCGTCCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
701 739 8.721019 TTCGTCCCATAATATAAGAACGTTTT 57.279 30.769 0.46 0.00 0.00 2.43
702 740 7.440255 CCTTCGTCCCATAATATAAGAACGTTT 59.560 37.037 0.46 0.00 0.00 3.60
703 741 6.927381 CCTTCGTCCCATAATATAAGAACGTT 59.073 38.462 0.00 0.00 0.00 3.99
704 742 6.266103 TCCTTCGTCCCATAATATAAGAACGT 59.734 38.462 0.00 0.00 0.00 3.99
705 743 6.684686 TCCTTCGTCCCATAATATAAGAACG 58.315 40.000 0.00 0.00 0.00 3.95
706 744 8.148999 ACTTCCTTCGTCCCATAATATAAGAAC 58.851 37.037 0.00 0.00 0.00 3.01
707 745 8.258850 ACTTCCTTCGTCCCATAATATAAGAA 57.741 34.615 0.00 0.00 0.00 2.52
708 746 7.850935 ACTTCCTTCGTCCCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
709 747 8.804204 ACTACTTCCTTCGTCCCATAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
710 748 8.716674 ACTACTTCCTTCGTCCCATAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
711 749 9.986157 ATACTACTTCCTTCGTCCCATAATATA 57.014 33.333 0.00 0.00 0.00 0.86
712 750 8.896722 ATACTACTTCCTTCGTCCCATAATAT 57.103 34.615 0.00 0.00 0.00 1.28
713 751 8.716674 AATACTACTTCCTTCGTCCCATAATA 57.283 34.615 0.00 0.00 0.00 0.98
714 752 7.613551 AATACTACTTCCTTCGTCCCATAAT 57.386 36.000 0.00 0.00 0.00 1.28
715 753 7.427989 AAATACTACTTCCTTCGTCCCATAA 57.572 36.000 0.00 0.00 0.00 1.90
716 754 7.232127 CCTAAATACTACTTCCTTCGTCCCATA 59.768 40.741 0.00 0.00 0.00 2.74
717 755 5.952347 AAATACTACTTCCTTCGTCCCAT 57.048 39.130 0.00 0.00 0.00 4.00
718 756 5.361857 CCTAAATACTACTTCCTTCGTCCCA 59.638 44.000 0.00 0.00 0.00 4.37
719 757 5.595952 TCCTAAATACTACTTCCTTCGTCCC 59.404 44.000 0.00 0.00 0.00 4.46
720 758 6.705863 TCCTAAATACTACTTCCTTCGTCC 57.294 41.667 0.00 0.00 0.00 4.79
721 759 6.690528 CGTTCCTAAATACTACTTCCTTCGTC 59.309 42.308 0.00 0.00 0.00 4.20
722 760 6.405176 CCGTTCCTAAATACTACTTCCTTCGT 60.405 42.308 0.00 0.00 0.00 3.85
723 761 5.975939 CCGTTCCTAAATACTACTTCCTTCG 59.024 44.000 0.00 0.00 0.00 3.79
724 762 7.105241 TCCGTTCCTAAATACTACTTCCTTC 57.895 40.000 0.00 0.00 0.00 3.46
725 763 6.097981 CCTCCGTTCCTAAATACTACTTCCTT 59.902 42.308 0.00 0.00 0.00 3.36
726 764 5.597594 CCTCCGTTCCTAAATACTACTTCCT 59.402 44.000 0.00 0.00 0.00 3.36
727 765 5.221402 CCCTCCGTTCCTAAATACTACTTCC 60.221 48.000 0.00 0.00 0.00 3.46
728 766 5.595952 TCCCTCCGTTCCTAAATACTACTTC 59.404 44.000 0.00 0.00 0.00 3.01
729 767 5.522641 TCCCTCCGTTCCTAAATACTACTT 58.477 41.667 0.00 0.00 0.00 2.24
730 768 5.134725 TCCCTCCGTTCCTAAATACTACT 57.865 43.478 0.00 0.00 0.00 2.57
731 769 4.892345 ACTCCCTCCGTTCCTAAATACTAC 59.108 45.833 0.00 0.00 0.00 2.73
732 770 5.134725 ACTCCCTCCGTTCCTAAATACTA 57.865 43.478 0.00 0.00 0.00 1.82
733 771 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
734 772 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
735 773 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
736 774 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
737 775 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
738 776 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
739 777 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
740 778 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
741 779 5.185442 CCTAATATTCTACTCCCTCCGTTCC 59.815 48.000 0.00 0.00 0.00 3.62
742 780 5.774184 ACCTAATATTCTACTCCCTCCGTTC 59.226 44.000 0.00 0.00 0.00 3.95
743 781 5.713807 ACCTAATATTCTACTCCCTCCGTT 58.286 41.667 0.00 0.00 0.00 4.44
744 782 5.336491 ACCTAATATTCTACTCCCTCCGT 57.664 43.478 0.00 0.00 0.00 4.69
745 783 5.047235 CCAACCTAATATTCTACTCCCTCCG 60.047 48.000 0.00 0.00 0.00 4.63
746 784 5.845065 ACCAACCTAATATTCTACTCCCTCC 59.155 44.000 0.00 0.00 0.00 4.30
747 785 6.239629 CCACCAACCTAATATTCTACTCCCTC 60.240 46.154 0.00 0.00 0.00 4.30
748 786 5.607171 CCACCAACCTAATATTCTACTCCCT 59.393 44.000 0.00 0.00 0.00 4.20
749 787 5.745181 GCCACCAACCTAATATTCTACTCCC 60.745 48.000 0.00 0.00 0.00 4.30
750 788 5.163237 TGCCACCAACCTAATATTCTACTCC 60.163 44.000 0.00 0.00 0.00 3.85
751 789 5.925509 TGCCACCAACCTAATATTCTACTC 58.074 41.667 0.00 0.00 0.00 2.59
752 790 5.968676 TGCCACCAACCTAATATTCTACT 57.031 39.130 0.00 0.00 0.00 2.57
753 791 7.582667 AAATGCCACCAACCTAATATTCTAC 57.417 36.000 0.00 0.00 0.00 2.59
760 798 7.784470 TTTAGTAAAATGCCACCAACCTAAT 57.216 32.000 0.00 0.00 0.00 1.73
779 817 2.224450 ACTAGCACGCACCCTTTTTAGT 60.224 45.455 0.00 0.00 0.00 2.24
984 1022 5.864474 CGTATCCATTGTATGTTAGCTCCTC 59.136 44.000 0.00 0.00 0.00 3.71
989 1027 4.389077 GCCTCGTATCCATTGTATGTTAGC 59.611 45.833 0.00 0.00 0.00 3.09
1092 1133 2.731691 GAACCGAGTTGAGGCTGCCA 62.732 60.000 22.65 0.00 0.00 4.92
1296 1337 4.357947 GCGTCACCCAGCTCACGA 62.358 66.667 0.00 0.00 34.06 4.35
1726 1768 9.288576 TGAAGGGCACATGAATAAAAGATATAG 57.711 33.333 0.00 0.00 0.00 1.31
1844 1895 3.243737 GCCGAAAATGTTTTCCTTGGTCT 60.244 43.478 11.45 0.00 42.66 3.85
2014 2142 6.896860 TGTGATTTCCTCATGGGTCATAAATT 59.103 34.615 0.00 0.00 35.97 1.82
2027 2155 6.713762 AATGACTTGTTTGTGATTTCCTCA 57.286 33.333 0.00 0.00 0.00 3.86
2064 2192 8.954350 GTAATAATATGAGCATTTGCATCCTCT 58.046 33.333 5.20 0.00 45.16 3.69
2162 2290 7.226325 ACGTAGTGTAGAACTGTAGATCCATAC 59.774 40.741 0.00 0.00 42.51 2.39
2164 2292 6.120905 ACGTAGTGTAGAACTGTAGATCCAT 58.879 40.000 0.00 0.00 42.51 3.41
2165 2293 5.494724 ACGTAGTGTAGAACTGTAGATCCA 58.505 41.667 0.00 0.00 42.51 3.41
2186 2314 4.886247 TGTTGACCCAACTTTAGAAACG 57.114 40.909 10.63 0.00 43.85 3.60
2199 2327 9.406828 GTTTTTAGAGTTTTGATATGTTGACCC 57.593 33.333 0.00 0.00 0.00 4.46
2214 2342 9.032624 TGTAGCTGATAGTAGGTTTTTAGAGTT 57.967 33.333 0.00 0.00 0.00 3.01
2218 2346 9.871238 TCTTTGTAGCTGATAGTAGGTTTTTAG 57.129 33.333 0.00 0.00 0.00 1.85
2239 2367 7.591057 TCAACATTGTCGAAAAATAGCTCTTTG 59.409 33.333 0.00 0.00 0.00 2.77
2253 2381 9.015577 GTTTTTGAAATTACTCAACATTGTCGA 57.984 29.630 0.00 0.00 35.07 4.20
2254 2382 8.265998 GGTTTTTGAAATTACTCAACATTGTCG 58.734 33.333 0.00 0.00 35.07 4.35
2255 2383 9.313118 AGGTTTTTGAAATTACTCAACATTGTC 57.687 29.630 0.00 0.00 35.07 3.18
2256 2384 9.313118 GAGGTTTTTGAAATTACTCAACATTGT 57.687 29.630 0.00 0.00 35.07 2.71
2257 2385 9.311916 TGAGGTTTTTGAAATTACTCAACATTG 57.688 29.630 0.00 0.00 35.07 2.82
2259 2387 9.696917 GATGAGGTTTTTGAAATTACTCAACAT 57.303 29.630 9.05 0.00 37.10 2.71
2260 2388 7.860373 CGATGAGGTTTTTGAAATTACTCAACA 59.140 33.333 9.05 0.00 37.10 3.33
2261 2389 7.860872 ACGATGAGGTTTTTGAAATTACTCAAC 59.139 33.333 9.05 6.70 37.10 3.18
2283 2411 4.505191 CGGATGTTTGGTATTTACGACGAT 59.495 41.667 0.00 0.00 0.00 3.73
2286 2414 3.242511 GGCGGATGTTTGGTATTTACGAC 60.243 47.826 0.00 0.00 0.00 4.34
2299 2427 8.635765 AATTATTTGTATCTATGGCGGATGTT 57.364 30.769 0.00 0.00 0.00 2.71
2369 2497 8.281531 CCTCTCTCCTGAACCTATATCTATCAT 58.718 40.741 0.00 0.00 0.00 2.45
2370 2498 7.462650 TCCTCTCTCCTGAACCTATATCTATCA 59.537 40.741 0.00 0.00 0.00 2.15
2371 2499 7.867921 TCCTCTCTCCTGAACCTATATCTATC 58.132 42.308 0.00 0.00 0.00 2.08
2372 2500 7.091993 CCTCCTCTCTCCTGAACCTATATCTAT 60.092 44.444 0.00 0.00 0.00 1.98
2402 2530 1.527148 TCCCGCTCCTCTCATCTCG 60.527 63.158 0.00 0.00 0.00 4.04
2409 2537 1.403687 GCCTATTGTCCCGCTCCTCT 61.404 60.000 0.00 0.00 0.00 3.69
2416 2544 0.174845 TCTTGACGCCTATTGTCCCG 59.825 55.000 0.00 0.00 35.46 5.14
2428 2556 1.442769 CCACACCAATCCTCTTGACG 58.557 55.000 0.00 0.00 0.00 4.35
2433 2561 1.355381 TCATTGCCACACCAATCCTCT 59.645 47.619 0.00 0.00 33.35 3.69
2443 2571 2.046023 CCGCTCCTCATTGCCACA 60.046 61.111 0.00 0.00 0.00 4.17
2446 2574 3.733344 TACGCCGCTCCTCATTGCC 62.733 63.158 0.00 0.00 0.00 4.52
2459 2587 4.849329 CCTCGTCACGCCTACGCC 62.849 72.222 0.00 0.00 45.53 5.68
2472 2600 1.226802 CTCGTGACATGCCTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
2506 2634 1.063114 GTCAACCTCCCTAGCCTCCTA 60.063 57.143 0.00 0.00 0.00 2.94
2522 2650 2.747686 GCCCTGGTTCCTCGTCAA 59.252 61.111 0.00 0.00 0.00 3.18
2544 2672 2.449322 CCCTCCCCTCCCATCAGG 60.449 72.222 0.00 0.00 0.00 3.86
2545 2673 1.768077 GTCCCTCCCCTCCCATCAG 60.768 68.421 0.00 0.00 0.00 2.90
2546 2674 2.372688 GTCCCTCCCCTCCCATCA 59.627 66.667 0.00 0.00 0.00 3.07
2547 2675 2.844839 CGTCCCTCCCCTCCCATC 60.845 72.222 0.00 0.00 0.00 3.51
2548 2676 4.499116 CCGTCCCTCCCCTCCCAT 62.499 72.222 0.00 0.00 0.00 4.00
2566 2694 4.530857 GGACCTGTCATCGGGCGG 62.531 72.222 0.00 0.00 43.58 6.13
2567 2695 2.076622 CTAGGACCTGTCATCGGGCG 62.077 65.000 3.53 0.00 43.58 6.13
2568 2696 1.742768 CTAGGACCTGTCATCGGGC 59.257 63.158 3.53 0.00 43.58 6.13
2569 2697 0.757188 AGCTAGGACCTGTCATCGGG 60.757 60.000 3.53 0.00 45.17 5.14
2570 2698 1.982660 TAGCTAGGACCTGTCATCGG 58.017 55.000 3.53 0.00 0.00 4.18
2571 2699 4.762765 AGTAATAGCTAGGACCTGTCATCG 59.237 45.833 3.53 0.00 0.00 3.84
2572 2700 5.770663 TCAGTAATAGCTAGGACCTGTCATC 59.229 44.000 3.53 0.00 0.00 2.92
2573 2701 5.706447 TCAGTAATAGCTAGGACCTGTCAT 58.294 41.667 3.53 0.00 0.00 3.06
2574 2702 5.125367 TCAGTAATAGCTAGGACCTGTCA 57.875 43.478 3.53 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.