Multiple sequence alignment - TraesCS7B01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G205800 chr7B 100.000 3361 0 0 1 3361 376800428 376803788 0.000000e+00 6207
1 TraesCS7B01G205800 chr7D 94.688 2918 89 29 487 3361 382378512 382381406 0.000000e+00 4470
2 TraesCS7B01G205800 chr7A 96.667 2160 47 9 562 2700 430490536 430492691 0.000000e+00 3567
3 TraesCS7B01G205800 chr7A 94.231 676 26 5 2698 3361 430492773 430493447 0.000000e+00 1020
4 TraesCS7B01G205800 chr7A 78.997 319 58 9 102 416 94134189 94133876 3.400000e-50 209
5 TraesCS7B01G205800 chrUn 95.787 356 15 0 59 414 94619464 94619109 2.910000e-160 575
6 TraesCS7B01G205800 chr1A 95.531 358 16 0 59 416 61381017 61380660 1.050000e-159 573
7 TraesCS7B01G205800 chr4D 94.693 358 19 0 59 416 305976630 305976273 1.050000e-154 556
8 TraesCS7B01G205800 chr5A 94.413 358 20 0 59 416 632773945 632774302 4.900000e-153 551
9 TraesCS7B01G205800 chr3A 95.195 333 16 0 84 416 28130522 28130190 8.260000e-146 527
10 TraesCS7B01G205800 chr4A 91.899 358 29 0 59 416 704619115 704619472 5.010000e-138 501
11 TraesCS7B01G205800 chr3D 88.187 364 40 3 60 422 523298301 523298662 6.660000e-117 431
12 TraesCS7B01G205800 chr6A 78.986 276 51 6 129 400 21956614 21956886 7.410000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G205800 chr7B 376800428 376803788 3360 False 6207.0 6207 100.000 1 3361 1 chr7B.!!$F1 3360
1 TraesCS7B01G205800 chr7D 382378512 382381406 2894 False 4470.0 4470 94.688 487 3361 1 chr7D.!!$F1 2874
2 TraesCS7B01G205800 chr7A 430490536 430493447 2911 False 2293.5 3567 95.449 562 3361 2 chr7A.!!$F1 2799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.032678 ACTCATATTCGCCGGAGCTG 59.967 55.0 5.05 0.0 36.60 4.24 F
459 460 0.034089 AATGGACTGGCAAGTAGGGC 60.034 55.0 0.00 0.0 36.52 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2293 2.375174 ACCTAGTGGGCAGTTGATTTCA 59.625 45.455 0.0 0.0 39.1 2.69 R
2385 2420 5.043737 AGTTGGGCTGTAGAAAACTTACA 57.956 39.130 0.0 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.139679 TCCTCCATCCTTTTCTTGTAATGT 57.860 37.500 0.00 0.00 0.00 2.71
25 26 6.552008 TCCTCCATCCTTTTCTTGTAATGTT 58.448 36.000 0.00 0.00 0.00 2.71
26 27 6.659242 TCCTCCATCCTTTTCTTGTAATGTTC 59.341 38.462 0.00 0.00 0.00 3.18
27 28 6.403636 CCTCCATCCTTTTCTTGTAATGTTCG 60.404 42.308 0.00 0.00 0.00 3.95
28 29 6.001460 TCCATCCTTTTCTTGTAATGTTCGT 58.999 36.000 0.00 0.00 0.00 3.85
29 30 7.162761 TCCATCCTTTTCTTGTAATGTTCGTA 58.837 34.615 0.00 0.00 0.00 3.43
30 31 7.827236 TCCATCCTTTTCTTGTAATGTTCGTAT 59.173 33.333 0.00 0.00 0.00 3.06
31 32 8.458843 CCATCCTTTTCTTGTAATGTTCGTATT 58.541 33.333 0.00 0.00 0.00 1.89
32 33 9.840427 CATCCTTTTCTTGTAATGTTCGTATTT 57.160 29.630 0.00 0.00 0.00 1.40
33 34 9.840427 ATCCTTTTCTTGTAATGTTCGTATTTG 57.160 29.630 0.00 0.00 0.00 2.32
34 35 8.842280 TCCTTTTCTTGTAATGTTCGTATTTGT 58.158 29.630 0.00 0.00 0.00 2.83
35 36 9.458374 CCTTTTCTTGTAATGTTCGTATTTGTT 57.542 29.630 0.00 0.00 0.00 2.83
39 40 8.789881 TCTTGTAATGTTCGTATTTGTTTTGG 57.210 30.769 0.00 0.00 0.00 3.28
40 41 8.622157 TCTTGTAATGTTCGTATTTGTTTTGGA 58.378 29.630 0.00 0.00 0.00 3.53
41 42 8.789881 TTGTAATGTTCGTATTTGTTTTGGAG 57.210 30.769 0.00 0.00 0.00 3.86
42 43 7.932335 TGTAATGTTCGTATTTGTTTTGGAGT 58.068 30.769 0.00 0.00 0.00 3.85
43 44 9.053840 TGTAATGTTCGTATTTGTTTTGGAGTA 57.946 29.630 0.00 0.00 0.00 2.59
44 45 9.881529 GTAATGTTCGTATTTGTTTTGGAGTAA 57.118 29.630 0.00 0.00 0.00 2.24
45 46 8.791355 AATGTTCGTATTTGTTTTGGAGTAAC 57.209 30.769 0.00 0.00 0.00 2.50
46 47 7.317842 TGTTCGTATTTGTTTTGGAGTAACA 57.682 32.000 0.00 0.00 33.92 2.41
47 48 7.188157 TGTTCGTATTTGTTTTGGAGTAACAC 58.812 34.615 0.00 0.00 35.39 3.32
48 49 7.066043 TGTTCGTATTTGTTTTGGAGTAACACT 59.934 33.333 0.00 0.00 35.39 3.55
49 50 7.556733 TCGTATTTGTTTTGGAGTAACACTT 57.443 32.000 0.00 0.00 35.39 3.16
50 51 7.411274 TCGTATTTGTTTTGGAGTAACACTTG 58.589 34.615 0.00 0.00 35.39 3.16
51 52 7.066043 TCGTATTTGTTTTGGAGTAACACTTGT 59.934 33.333 0.00 0.00 35.39 3.16
52 53 8.336806 CGTATTTGTTTTGGAGTAACACTTGTA 58.663 33.333 0.00 0.00 35.39 2.41
55 56 8.918961 TTTGTTTTGGAGTAACACTTGTAATG 57.081 30.769 0.00 0.00 35.39 1.90
56 57 7.633193 TGTTTTGGAGTAACACTTGTAATGT 57.367 32.000 0.00 0.00 30.96 2.71
57 58 8.057536 TGTTTTGGAGTAACACTTGTAATGTT 57.942 30.769 0.00 0.00 42.78 2.71
58 59 9.175312 TGTTTTGGAGTAACACTTGTAATGTTA 57.825 29.630 0.00 0.00 40.68 2.41
59 60 9.659830 GTTTTGGAGTAACACTTGTAATGTTAG 57.340 33.333 0.00 0.00 41.87 2.34
60 61 9.616156 TTTTGGAGTAACACTTGTAATGTTAGA 57.384 29.630 0.00 0.00 41.87 2.10
61 62 8.827177 TTGGAGTAACACTTGTAATGTTAGAG 57.173 34.615 0.00 0.00 41.87 2.43
62 63 7.959175 TGGAGTAACACTTGTAATGTTAGAGT 58.041 34.615 0.00 0.00 41.87 3.24
63 64 8.426489 TGGAGTAACACTTGTAATGTTAGAGTT 58.574 33.333 0.00 0.00 41.87 3.01
64 65 9.918630 GGAGTAACACTTGTAATGTTAGAGTTA 57.081 33.333 0.00 0.00 41.87 2.24
69 70 8.084590 ACACTTGTAATGTTAGAGTTACTTGC 57.915 34.615 0.00 0.00 33.17 4.01
70 71 7.713507 ACACTTGTAATGTTAGAGTTACTTGCA 59.286 33.333 0.00 0.00 33.17 4.08
71 72 8.556194 CACTTGTAATGTTAGAGTTACTTGCAA 58.444 33.333 0.00 0.00 33.17 4.08
72 73 9.284968 ACTTGTAATGTTAGAGTTACTTGCAAT 57.715 29.630 0.00 0.00 33.17 3.56
77 78 7.865706 ATGTTAGAGTTACTTGCAATAAGGG 57.134 36.000 0.00 0.00 0.00 3.95
78 79 7.011499 TGTTAGAGTTACTTGCAATAAGGGA 57.989 36.000 0.00 0.00 0.00 4.20
79 80 7.103641 TGTTAGAGTTACTTGCAATAAGGGAG 58.896 38.462 0.00 0.00 0.00 4.30
80 81 5.104259 AGAGTTACTTGCAATAAGGGAGG 57.896 43.478 0.00 0.00 0.00 4.30
81 82 4.080299 AGAGTTACTTGCAATAAGGGAGGG 60.080 45.833 0.00 0.00 0.00 4.30
82 83 3.850173 AGTTACTTGCAATAAGGGAGGGA 59.150 43.478 0.00 0.00 0.00 4.20
83 84 4.291249 AGTTACTTGCAATAAGGGAGGGAA 59.709 41.667 0.00 0.00 0.00 3.97
84 85 5.044105 AGTTACTTGCAATAAGGGAGGGAAT 60.044 40.000 0.00 0.00 0.00 3.01
85 86 4.337264 ACTTGCAATAAGGGAGGGAATT 57.663 40.909 0.00 0.00 0.00 2.17
86 87 4.687976 ACTTGCAATAAGGGAGGGAATTT 58.312 39.130 0.00 0.00 0.00 1.82
87 88 4.711846 ACTTGCAATAAGGGAGGGAATTTC 59.288 41.667 0.00 0.00 0.00 2.17
88 89 4.608170 TGCAATAAGGGAGGGAATTTCT 57.392 40.909 0.00 0.00 0.00 2.52
89 90 4.946646 TGCAATAAGGGAGGGAATTTCTT 58.053 39.130 0.00 0.00 0.00 2.52
90 91 5.341169 TGCAATAAGGGAGGGAATTTCTTT 58.659 37.500 0.00 0.00 0.00 2.52
91 92 5.187576 TGCAATAAGGGAGGGAATTTCTTTG 59.812 40.000 0.00 0.00 0.00 2.77
92 93 5.395657 GCAATAAGGGAGGGAATTTCTTTGG 60.396 44.000 0.00 0.00 0.00 3.28
93 94 2.238084 AGGGAGGGAATTTCTTTGGC 57.762 50.000 0.00 0.00 0.00 4.52
94 95 1.195115 GGGAGGGAATTTCTTTGGCC 58.805 55.000 0.00 0.00 0.00 5.36
95 96 1.195115 GGAGGGAATTTCTTTGGCCC 58.805 55.000 0.00 0.00 39.12 5.80
97 98 2.721585 AGGGAATTTCTTTGGCCCTT 57.278 45.000 0.00 0.00 46.80 3.95
98 99 2.540383 AGGGAATTTCTTTGGCCCTTC 58.460 47.619 0.00 0.00 46.80 3.46
99 100 2.158173 AGGGAATTTCTTTGGCCCTTCA 60.158 45.455 0.00 0.00 46.80 3.02
100 101 2.234661 GGGAATTTCTTTGGCCCTTCAG 59.765 50.000 0.00 0.00 35.86 3.02
101 102 2.899900 GGAATTTCTTTGGCCCTTCAGT 59.100 45.455 0.00 0.00 0.00 3.41
102 103 3.306294 GGAATTTCTTTGGCCCTTCAGTG 60.306 47.826 0.00 0.00 0.00 3.66
103 104 1.703411 TTTCTTTGGCCCTTCAGTGG 58.297 50.000 0.00 0.00 0.00 4.00
104 105 0.850100 TTCTTTGGCCCTTCAGTGGA 59.150 50.000 0.00 0.00 0.00 4.02
105 106 0.401738 TCTTTGGCCCTTCAGTGGAG 59.598 55.000 0.00 0.00 0.00 3.86
106 107 1.228552 TTTGGCCCTTCAGTGGAGC 60.229 57.895 0.00 0.00 0.00 4.70
107 108 2.005606 TTTGGCCCTTCAGTGGAGCA 62.006 55.000 0.00 0.00 0.00 4.26
108 109 1.792757 TTGGCCCTTCAGTGGAGCAT 61.793 55.000 0.00 0.00 0.00 3.79
109 110 1.452833 GGCCCTTCAGTGGAGCATC 60.453 63.158 0.00 0.00 0.00 3.91
110 111 1.606531 GCCCTTCAGTGGAGCATCT 59.393 57.895 0.00 0.00 33.73 2.90
111 112 0.034670 GCCCTTCAGTGGAGCATCTT 60.035 55.000 0.00 0.00 33.73 2.40
112 113 1.747709 CCCTTCAGTGGAGCATCTTG 58.252 55.000 0.00 0.00 33.73 3.02
113 114 1.093159 CCTTCAGTGGAGCATCTTGC 58.907 55.000 0.00 0.00 45.46 4.01
114 115 1.093159 CTTCAGTGGAGCATCTTGCC 58.907 55.000 0.00 0.00 46.52 4.52
115 116 0.401356 TTCAGTGGAGCATCTTGCCA 59.599 50.000 0.00 0.00 46.52 4.92
116 117 0.622136 TCAGTGGAGCATCTTGCCAT 59.378 50.000 0.00 0.00 46.52 4.40
117 118 1.022735 CAGTGGAGCATCTTGCCATC 58.977 55.000 0.00 0.00 46.52 3.51
118 119 0.622136 AGTGGAGCATCTTGCCATCA 59.378 50.000 0.00 0.00 46.52 3.07
119 120 1.022735 GTGGAGCATCTTGCCATCAG 58.977 55.000 0.00 0.00 46.52 2.90
120 121 0.913924 TGGAGCATCTTGCCATCAGA 59.086 50.000 0.00 0.00 46.52 3.27
121 122 1.493446 TGGAGCATCTTGCCATCAGAT 59.507 47.619 0.00 0.00 46.52 2.90
122 123 1.880675 GGAGCATCTTGCCATCAGATG 59.119 52.381 3.04 3.04 46.52 2.90
123 124 2.573369 GAGCATCTTGCCATCAGATGT 58.427 47.619 9.64 0.00 46.52 3.06
124 125 2.290916 GAGCATCTTGCCATCAGATGTG 59.709 50.000 9.64 1.26 46.52 3.21
125 126 1.337071 GCATCTTGCCATCAGATGTGG 59.663 52.381 9.64 0.00 40.89 4.17
126 127 2.927028 CATCTTGCCATCAGATGTGGA 58.073 47.619 9.64 0.00 39.12 4.02
127 128 2.704464 TCTTGCCATCAGATGTGGAG 57.296 50.000 9.64 4.15 39.12 3.86
128 129 1.911357 TCTTGCCATCAGATGTGGAGT 59.089 47.619 9.64 0.00 39.12 3.85
129 130 2.093288 TCTTGCCATCAGATGTGGAGTC 60.093 50.000 9.64 0.00 39.12 3.36
130 131 1.576577 TGCCATCAGATGTGGAGTCT 58.423 50.000 9.64 0.00 39.12 3.24
131 132 1.208776 TGCCATCAGATGTGGAGTCTG 59.791 52.381 9.64 0.00 43.46 3.51
137 138 4.897509 TCAGATGTGGAGTCTGATTGTT 57.102 40.909 1.94 0.00 45.19 2.83
138 139 5.233083 TCAGATGTGGAGTCTGATTGTTT 57.767 39.130 1.94 0.00 45.19 2.83
139 140 6.358974 TCAGATGTGGAGTCTGATTGTTTA 57.641 37.500 1.94 0.00 45.19 2.01
140 141 6.401394 TCAGATGTGGAGTCTGATTGTTTAG 58.599 40.000 1.94 0.00 45.19 1.85
141 142 6.211384 TCAGATGTGGAGTCTGATTGTTTAGA 59.789 38.462 1.94 0.00 45.19 2.10
142 143 6.534436 CAGATGTGGAGTCTGATTGTTTAGAG 59.466 42.308 0.00 0.00 44.57 2.43
143 144 5.152623 TGTGGAGTCTGATTGTTTAGAGG 57.847 43.478 0.00 0.00 0.00 3.69
144 145 3.935828 GTGGAGTCTGATTGTTTAGAGGC 59.064 47.826 0.00 0.00 0.00 4.70
145 146 3.840666 TGGAGTCTGATTGTTTAGAGGCT 59.159 43.478 0.00 0.00 0.00 4.58
146 147 4.187694 GGAGTCTGATTGTTTAGAGGCTG 58.812 47.826 0.00 0.00 0.00 4.85
147 148 4.323104 GGAGTCTGATTGTTTAGAGGCTGT 60.323 45.833 0.00 0.00 0.00 4.40
148 149 5.234466 AGTCTGATTGTTTAGAGGCTGTT 57.766 39.130 0.00 0.00 0.00 3.16
149 150 6.360370 AGTCTGATTGTTTAGAGGCTGTTA 57.640 37.500 0.00 0.00 0.00 2.41
150 151 6.769512 AGTCTGATTGTTTAGAGGCTGTTAA 58.230 36.000 0.00 0.00 0.00 2.01
151 152 7.398024 AGTCTGATTGTTTAGAGGCTGTTAAT 58.602 34.615 0.00 0.00 0.00 1.40
152 153 8.540388 AGTCTGATTGTTTAGAGGCTGTTAATA 58.460 33.333 0.00 0.00 0.00 0.98
153 154 9.331282 GTCTGATTGTTTAGAGGCTGTTAATAT 57.669 33.333 0.00 0.00 0.00 1.28
154 155 9.330063 TCTGATTGTTTAGAGGCTGTTAATATG 57.670 33.333 0.00 0.00 0.00 1.78
155 156 9.330063 CTGATTGTTTAGAGGCTGTTAATATGA 57.670 33.333 0.00 0.00 0.00 2.15
156 157 9.851686 TGATTGTTTAGAGGCTGTTAATATGAT 57.148 29.630 0.00 0.00 0.00 2.45
165 166 9.566432 AGAGGCTGTTAATATGATTAAAAGAGG 57.434 33.333 11.66 0.00 0.00 3.69
166 167 8.697507 AGGCTGTTAATATGATTAAAAGAGGG 57.302 34.615 11.66 0.00 0.00 4.30
167 168 8.502738 AGGCTGTTAATATGATTAAAAGAGGGA 58.497 33.333 11.66 0.00 0.00 4.20
168 169 9.131791 GGCTGTTAATATGATTAAAAGAGGGAA 57.868 33.333 11.66 0.00 0.00 3.97
176 177 9.866655 ATATGATTAAAAGAGGGAATAGCAACA 57.133 29.630 0.00 0.00 0.00 3.33
177 178 8.593945 ATGATTAAAAGAGGGAATAGCAACAA 57.406 30.769 0.00 0.00 0.00 2.83
178 179 8.415950 TGATTAAAAGAGGGAATAGCAACAAA 57.584 30.769 0.00 0.00 0.00 2.83
179 180 9.034800 TGATTAAAAGAGGGAATAGCAACAAAT 57.965 29.630 0.00 0.00 0.00 2.32
180 181 9.521503 GATTAAAAGAGGGAATAGCAACAAATC 57.478 33.333 0.00 0.00 0.00 2.17
181 182 8.650143 TTAAAAGAGGGAATAGCAACAAATCT 57.350 30.769 0.00 0.00 0.00 2.40
182 183 9.747898 TTAAAAGAGGGAATAGCAACAAATCTA 57.252 29.630 0.00 0.00 0.00 1.98
183 184 8.650143 AAAAGAGGGAATAGCAACAAATCTAA 57.350 30.769 0.00 0.00 0.00 2.10
184 185 8.650143 AAAGAGGGAATAGCAACAAATCTAAA 57.350 30.769 0.00 0.00 0.00 1.85
185 186 8.829373 AAGAGGGAATAGCAACAAATCTAAAT 57.171 30.769 0.00 0.00 0.00 1.40
186 187 9.920946 AAGAGGGAATAGCAACAAATCTAAATA 57.079 29.630 0.00 0.00 0.00 1.40
189 190 8.579863 AGGGAATAGCAACAAATCTAAATATGC 58.420 33.333 0.00 0.00 0.00 3.14
190 191 8.579863 GGGAATAGCAACAAATCTAAATATGCT 58.420 33.333 0.00 0.00 44.17 3.79
191 192 9.971922 GGAATAGCAACAAATCTAAATATGCTT 57.028 29.630 2.47 0.00 42.21 3.91
196 197 9.525409 AGCAACAAATCTAAATATGCTTTCATC 57.475 29.630 0.00 0.00 39.44 2.92
197 198 9.304731 GCAACAAATCTAAATATGCTTTCATCA 57.695 29.630 0.00 0.00 34.22 3.07
205 206 9.708092 TCTAAATATGCTTTCATCATCAGAGAG 57.292 33.333 0.00 0.00 34.22 3.20
206 207 9.708092 CTAAATATGCTTTCATCATCAGAGAGA 57.292 33.333 0.00 0.00 34.22 3.10
208 209 8.780846 AATATGCTTTCATCATCAGAGAGATC 57.219 34.615 0.00 0.00 32.54 2.75
209 210 5.609533 TGCTTTCATCATCAGAGAGATCA 57.390 39.130 0.00 0.00 33.72 2.92
210 211 6.176014 TGCTTTCATCATCAGAGAGATCAT 57.824 37.500 0.00 0.00 33.72 2.45
211 212 6.592870 TGCTTTCATCATCAGAGAGATCATT 58.407 36.000 0.00 0.00 33.72 2.57
212 213 7.732996 TGCTTTCATCATCAGAGAGATCATTA 58.267 34.615 0.00 0.00 33.72 1.90
213 214 7.873505 TGCTTTCATCATCAGAGAGATCATTAG 59.126 37.037 0.00 0.00 33.72 1.73
214 215 7.874016 GCTTTCATCATCAGAGAGATCATTAGT 59.126 37.037 0.00 0.00 33.72 2.24
217 218 9.585369 TTCATCATCAGAGAGATCATTAGTAGT 57.415 33.333 0.00 0.00 33.72 2.73
218 219 9.585369 TCATCATCAGAGAGATCATTAGTAGTT 57.415 33.333 0.00 0.00 33.72 2.24
221 222 8.637099 TCATCAGAGAGATCATTAGTAGTTTGG 58.363 37.037 0.00 0.00 33.72 3.28
222 223 7.353414 TCAGAGAGATCATTAGTAGTTTGGG 57.647 40.000 0.00 0.00 0.00 4.12
223 224 7.126061 TCAGAGAGATCATTAGTAGTTTGGGA 58.874 38.462 0.00 0.00 0.00 4.37
224 225 7.286546 TCAGAGAGATCATTAGTAGTTTGGGAG 59.713 40.741 0.00 0.00 0.00 4.30
225 226 7.286546 CAGAGAGATCATTAGTAGTTTGGGAGA 59.713 40.741 0.00 0.00 0.00 3.71
226 227 7.841729 AGAGAGATCATTAGTAGTTTGGGAGAA 59.158 37.037 0.00 0.00 0.00 2.87
227 228 8.380742 AGAGATCATTAGTAGTTTGGGAGAAA 57.619 34.615 0.00 0.00 0.00 2.52
228 229 8.482128 AGAGATCATTAGTAGTTTGGGAGAAAG 58.518 37.037 0.00 0.00 0.00 2.62
229 230 7.569240 AGATCATTAGTAGTTTGGGAGAAAGG 58.431 38.462 0.00 0.00 0.00 3.11
230 231 6.945636 TCATTAGTAGTTTGGGAGAAAGGA 57.054 37.500 0.00 0.00 0.00 3.36
231 232 7.324388 TCATTAGTAGTTTGGGAGAAAGGAA 57.676 36.000 0.00 0.00 0.00 3.36
232 233 7.928873 TCATTAGTAGTTTGGGAGAAAGGAAT 58.071 34.615 0.00 0.00 0.00 3.01
233 234 8.390921 TCATTAGTAGTTTGGGAGAAAGGAATT 58.609 33.333 0.00 0.00 0.00 2.17
234 235 8.678199 CATTAGTAGTTTGGGAGAAAGGAATTC 58.322 37.037 0.00 0.00 38.39 2.17
247 248 7.951347 AGAAAGGAATTCTTGCATTACTCAT 57.049 32.000 5.23 0.00 46.39 2.90
249 250 9.638176 AGAAAGGAATTCTTGCATTACTCATAT 57.362 29.630 5.23 0.00 46.39 1.78
252 253 8.092521 AGGAATTCTTGCATTACTCATATTCG 57.907 34.615 5.23 0.00 0.00 3.34
253 254 6.798959 GGAATTCTTGCATTACTCATATTCGC 59.201 38.462 5.23 0.00 0.00 4.70
254 255 5.673337 TTCTTGCATTACTCATATTCGCC 57.327 39.130 0.00 0.00 0.00 5.54
255 256 3.740832 TCTTGCATTACTCATATTCGCCG 59.259 43.478 0.00 0.00 0.00 6.46
256 257 2.412870 TGCATTACTCATATTCGCCGG 58.587 47.619 0.00 0.00 0.00 6.13
257 258 2.036604 TGCATTACTCATATTCGCCGGA 59.963 45.455 5.05 0.00 0.00 5.14
258 259 2.668457 GCATTACTCATATTCGCCGGAG 59.332 50.000 5.05 0.00 0.00 4.63
259 260 2.433868 TTACTCATATTCGCCGGAGC 57.566 50.000 5.05 0.00 0.00 4.70
260 261 1.617322 TACTCATATTCGCCGGAGCT 58.383 50.000 5.05 0.00 36.60 4.09
261 262 0.032678 ACTCATATTCGCCGGAGCTG 59.967 55.000 5.05 0.00 36.60 4.24
262 263 0.032678 CTCATATTCGCCGGAGCTGT 59.967 55.000 5.05 0.00 36.60 4.40
263 264 1.269723 CTCATATTCGCCGGAGCTGTA 59.730 52.381 5.05 0.00 36.60 2.74
264 265 1.684450 TCATATTCGCCGGAGCTGTAA 59.316 47.619 5.05 0.00 36.60 2.41
265 266 2.299013 TCATATTCGCCGGAGCTGTAAT 59.701 45.455 5.05 0.00 36.60 1.89
266 267 3.508402 TCATATTCGCCGGAGCTGTAATA 59.492 43.478 5.05 2.17 36.60 0.98
267 268 2.902705 ATTCGCCGGAGCTGTAATAA 57.097 45.000 5.05 0.00 36.60 1.40
268 269 2.218953 TTCGCCGGAGCTGTAATAAG 57.781 50.000 5.05 0.00 36.60 1.73
269 270 0.387929 TCGCCGGAGCTGTAATAAGG 59.612 55.000 5.05 0.00 36.60 2.69
270 271 0.104304 CGCCGGAGCTGTAATAAGGT 59.896 55.000 5.05 0.00 36.60 3.50
271 272 1.472728 CGCCGGAGCTGTAATAAGGTT 60.473 52.381 5.05 0.00 36.60 3.50
272 273 2.223876 CGCCGGAGCTGTAATAAGGTTA 60.224 50.000 5.05 0.00 36.60 2.85
273 274 3.391049 GCCGGAGCTGTAATAAGGTTAG 58.609 50.000 5.05 0.00 35.50 2.34
274 275 3.181468 GCCGGAGCTGTAATAAGGTTAGT 60.181 47.826 5.05 0.00 35.50 2.24
275 276 4.618965 CCGGAGCTGTAATAAGGTTAGTC 58.381 47.826 0.00 0.00 0.00 2.59
276 277 4.098960 CCGGAGCTGTAATAAGGTTAGTCA 59.901 45.833 0.00 0.00 0.00 3.41
277 278 5.221461 CCGGAGCTGTAATAAGGTTAGTCAT 60.221 44.000 0.00 0.00 0.00 3.06
278 279 5.692204 CGGAGCTGTAATAAGGTTAGTCATG 59.308 44.000 0.00 0.00 0.00 3.07
279 280 5.467063 GGAGCTGTAATAAGGTTAGTCATGC 59.533 44.000 0.00 0.00 0.00 4.06
280 281 5.368989 AGCTGTAATAAGGTTAGTCATGCC 58.631 41.667 0.00 0.00 0.00 4.40
281 282 5.131142 AGCTGTAATAAGGTTAGTCATGCCT 59.869 40.000 0.00 0.00 0.00 4.75
282 283 5.823045 GCTGTAATAAGGTTAGTCATGCCTT 59.177 40.000 6.76 6.76 44.06 4.35
283 284 6.238484 GCTGTAATAAGGTTAGTCATGCCTTG 60.238 42.308 10.76 0.00 42.07 3.61
284 285 6.119536 TGTAATAAGGTTAGTCATGCCTTGG 58.880 40.000 10.76 0.00 42.07 3.61
285 286 1.839424 AAGGTTAGTCATGCCTTGGC 58.161 50.000 4.43 4.43 40.71 4.52
286 287 0.698238 AGGTTAGTCATGCCTTGGCA 59.302 50.000 17.19 17.19 29.99 4.92
287 288 1.075374 AGGTTAGTCATGCCTTGGCAA 59.925 47.619 18.76 0.00 29.99 4.52
288 289 1.892474 GGTTAGTCATGCCTTGGCAAA 59.108 47.619 18.76 7.18 29.99 3.68
289 290 2.497273 GGTTAGTCATGCCTTGGCAAAT 59.503 45.455 18.76 5.01 29.99 2.32
290 291 3.055891 GGTTAGTCATGCCTTGGCAAATT 60.056 43.478 18.76 9.11 29.99 1.82
291 292 4.563374 GGTTAGTCATGCCTTGGCAAATTT 60.563 41.667 18.76 7.70 29.99 1.82
292 293 3.775261 AGTCATGCCTTGGCAAATTTT 57.225 38.095 18.76 0.00 29.99 1.82
293 294 3.404899 AGTCATGCCTTGGCAAATTTTG 58.595 40.909 18.76 11.64 29.99 2.44
294 295 2.485038 GTCATGCCTTGGCAAATTTTGG 59.515 45.455 18.76 0.00 0.00 3.28
295 296 2.106166 TCATGCCTTGGCAAATTTTGGT 59.894 40.909 18.76 0.00 0.00 3.67
296 297 3.326006 TCATGCCTTGGCAAATTTTGGTA 59.674 39.130 18.76 0.00 0.00 3.25
297 298 3.399440 TGCCTTGGCAAATTTTGGTAG 57.601 42.857 12.40 0.00 0.00 3.18
298 299 2.038295 TGCCTTGGCAAATTTTGGTAGG 59.962 45.455 12.40 0.00 0.00 3.18
299 300 2.038426 GCCTTGGCAAATTTTGGTAGGT 59.962 45.455 10.96 0.00 0.00 3.08
300 301 3.495983 GCCTTGGCAAATTTTGGTAGGTT 60.496 43.478 10.96 0.00 0.00 3.50
301 302 4.064388 CCTTGGCAAATTTTGGTAGGTTG 58.936 43.478 10.96 0.00 0.00 3.77
302 303 3.118905 TGGCAAATTTTGGTAGGTTGC 57.881 42.857 10.96 0.00 42.99 4.17
303 304 2.435805 TGGCAAATTTTGGTAGGTTGCA 59.564 40.909 10.96 0.00 44.98 4.08
304 305 3.118261 TGGCAAATTTTGGTAGGTTGCAA 60.118 39.130 10.96 0.00 44.98 4.08
305 306 3.249799 GGCAAATTTTGGTAGGTTGCAAC 59.750 43.478 21.59 21.59 44.98 4.17
306 307 3.059935 GCAAATTTTGGTAGGTTGCAACG 60.060 43.478 22.67 5.77 43.17 4.10
307 308 2.432206 ATTTTGGTAGGTTGCAACGC 57.568 45.000 22.67 15.44 0.00 4.84
308 309 0.386113 TTTTGGTAGGTTGCAACGCC 59.614 50.000 22.67 22.21 0.00 5.68
309 310 1.787057 TTTGGTAGGTTGCAACGCCG 61.787 55.000 22.67 0.00 0.00 6.46
310 311 2.357760 GGTAGGTTGCAACGCCGA 60.358 61.111 22.67 4.12 0.00 5.54
311 312 1.962306 GGTAGGTTGCAACGCCGAA 60.962 57.895 22.67 3.89 0.00 4.30
312 313 1.205820 GTAGGTTGCAACGCCGAAC 59.794 57.895 22.67 11.98 0.00 3.95
313 314 1.070105 TAGGTTGCAACGCCGAACT 59.930 52.632 22.67 14.93 0.00 3.01
314 315 0.317799 TAGGTTGCAACGCCGAACTA 59.682 50.000 22.67 13.97 0.00 2.24
315 316 0.321298 AGGTTGCAACGCCGAACTAT 60.321 50.000 22.67 0.00 0.00 2.12
316 317 0.179200 GGTTGCAACGCCGAACTATG 60.179 55.000 22.67 0.00 0.00 2.23
317 318 0.179200 GTTGCAACGCCGAACTATGG 60.179 55.000 14.90 0.00 0.00 2.74
318 319 0.604243 TTGCAACGCCGAACTATGGT 60.604 50.000 0.00 0.00 0.00 3.55
319 320 0.604243 TGCAACGCCGAACTATGGTT 60.604 50.000 0.00 0.00 38.52 3.67
320 321 0.519961 GCAACGCCGAACTATGGTTT 59.480 50.000 0.00 0.00 35.58 3.27
321 322 1.727857 GCAACGCCGAACTATGGTTTG 60.728 52.381 2.21 2.21 35.58 2.93
327 328 2.561569 CCGAACTATGGTTTGGCTAGG 58.438 52.381 14.73 0.37 46.35 3.02
328 329 1.940613 CGAACTATGGTTTGGCTAGGC 59.059 52.381 9.85 9.85 35.58 3.93
329 330 2.679639 CGAACTATGGTTTGGCTAGGCA 60.680 50.000 16.16 16.16 35.58 4.75
330 331 2.420058 ACTATGGTTTGGCTAGGCAC 57.580 50.000 20.09 8.49 0.00 5.01
331 332 1.916181 ACTATGGTTTGGCTAGGCACT 59.084 47.619 20.09 4.28 46.37 4.40
332 333 2.292267 CTATGGTTTGGCTAGGCACTG 58.708 52.381 20.09 0.64 41.52 3.66
333 334 0.323725 ATGGTTTGGCTAGGCACTGG 60.324 55.000 20.09 0.00 41.52 4.00
334 335 1.074951 GGTTTGGCTAGGCACTGGT 59.925 57.895 20.09 0.00 41.52 4.00
335 336 0.960861 GGTTTGGCTAGGCACTGGTC 60.961 60.000 20.09 7.54 43.74 4.02
336 337 0.960861 GTTTGGCTAGGCACTGGTCC 60.961 60.000 20.09 0.00 42.38 4.46
337 338 2.463589 TTTGGCTAGGCACTGGTCCG 62.464 60.000 20.09 0.00 42.38 4.79
338 339 4.162690 GGCTAGGCACTGGTCCGG 62.163 72.222 12.16 0.00 41.52 5.14
339 340 3.075005 GCTAGGCACTGGTCCGGA 61.075 66.667 0.00 0.00 41.52 5.14
340 341 2.656069 GCTAGGCACTGGTCCGGAA 61.656 63.158 5.23 0.00 41.52 4.30
341 342 1.517832 CTAGGCACTGGTCCGGAAG 59.482 63.158 5.23 2.94 41.52 3.46
342 343 0.970937 CTAGGCACTGGTCCGGAAGA 60.971 60.000 5.23 0.00 41.52 2.87
343 344 0.325296 TAGGCACTGGTCCGGAAGAT 60.325 55.000 5.23 0.00 41.52 2.40
344 345 1.450312 GGCACTGGTCCGGAAGATG 60.450 63.158 5.23 3.55 0.00 2.90
345 346 1.296715 GCACTGGTCCGGAAGATGT 59.703 57.895 5.23 0.00 0.00 3.06
346 347 0.321653 GCACTGGTCCGGAAGATGTT 60.322 55.000 5.23 0.00 0.00 2.71
347 348 1.882352 GCACTGGTCCGGAAGATGTTT 60.882 52.381 5.23 0.00 0.00 2.83
348 349 2.504367 CACTGGTCCGGAAGATGTTTT 58.496 47.619 5.23 0.00 0.00 2.43
349 350 2.226437 CACTGGTCCGGAAGATGTTTTG 59.774 50.000 5.23 0.00 0.00 2.44
350 351 1.812571 CTGGTCCGGAAGATGTTTTGG 59.187 52.381 5.23 0.00 0.00 3.28
351 352 0.526211 GGTCCGGAAGATGTTTTGGC 59.474 55.000 5.23 0.00 0.00 4.52
352 353 1.243902 GTCCGGAAGATGTTTTGGCA 58.756 50.000 5.23 0.00 0.00 4.92
353 354 1.068541 GTCCGGAAGATGTTTTGGCAC 60.069 52.381 5.23 0.00 0.00 5.01
354 355 1.202879 TCCGGAAGATGTTTTGGCACT 60.203 47.619 0.00 0.00 0.00 4.40
355 356 1.613437 CCGGAAGATGTTTTGGCACTT 59.387 47.619 0.00 0.00 0.00 3.16
356 357 2.607771 CCGGAAGATGTTTTGGCACTTG 60.608 50.000 0.00 0.00 0.00 3.16
357 358 2.034558 CGGAAGATGTTTTGGCACTTGT 59.965 45.455 0.00 0.00 0.00 3.16
358 359 3.383761 GGAAGATGTTTTGGCACTTGTG 58.616 45.455 0.00 0.00 0.00 3.33
359 360 3.383761 GAAGATGTTTTGGCACTTGTGG 58.616 45.455 2.81 0.00 0.00 4.17
360 361 1.688197 AGATGTTTTGGCACTTGTGGG 59.312 47.619 2.81 0.00 0.00 4.61
361 362 1.686052 GATGTTTTGGCACTTGTGGGA 59.314 47.619 2.81 0.00 0.00 4.37
362 363 0.820871 TGTTTTGGCACTTGTGGGAC 59.179 50.000 2.81 0.00 0.00 4.46
363 364 0.248866 GTTTTGGCACTTGTGGGACG 60.249 55.000 2.81 0.00 0.00 4.79
364 365 0.394488 TTTTGGCACTTGTGGGACGA 60.394 50.000 2.81 0.00 0.00 4.20
365 366 0.394488 TTTGGCACTTGTGGGACGAA 60.394 50.000 2.81 0.00 0.00 3.85
366 367 0.179004 TTGGCACTTGTGGGACGAAT 60.179 50.000 2.81 0.00 0.00 3.34
367 368 0.179004 TGGCACTTGTGGGACGAATT 60.179 50.000 2.81 0.00 0.00 2.17
368 369 0.240945 GGCACTTGTGGGACGAATTG 59.759 55.000 2.81 0.00 0.00 2.32
369 370 0.951558 GCACTTGTGGGACGAATTGT 59.048 50.000 2.81 0.00 0.00 2.71
370 371 2.147958 GCACTTGTGGGACGAATTGTA 58.852 47.619 2.81 0.00 0.00 2.41
371 372 2.550606 GCACTTGTGGGACGAATTGTAA 59.449 45.455 2.81 0.00 0.00 2.41
372 373 3.190535 GCACTTGTGGGACGAATTGTAAT 59.809 43.478 2.81 0.00 0.00 1.89
373 374 4.671766 GCACTTGTGGGACGAATTGTAATC 60.672 45.833 2.81 0.00 0.00 1.75
374 375 4.695455 CACTTGTGGGACGAATTGTAATCT 59.305 41.667 0.00 0.00 0.00 2.40
375 376 4.935808 ACTTGTGGGACGAATTGTAATCTC 59.064 41.667 0.00 0.00 0.00 2.75
376 377 4.819105 TGTGGGACGAATTGTAATCTCT 57.181 40.909 0.00 0.00 0.00 3.10
377 378 4.503910 TGTGGGACGAATTGTAATCTCTG 58.496 43.478 0.00 0.00 0.00 3.35
378 379 4.221924 TGTGGGACGAATTGTAATCTCTGA 59.778 41.667 0.00 0.00 0.00 3.27
379 380 5.104941 TGTGGGACGAATTGTAATCTCTGAT 60.105 40.000 0.00 0.00 0.00 2.90
380 381 6.097696 TGTGGGACGAATTGTAATCTCTGATA 59.902 38.462 0.00 0.00 0.00 2.15
381 382 6.421202 GTGGGACGAATTGTAATCTCTGATAC 59.579 42.308 0.00 0.00 0.00 2.24
382 383 6.323996 TGGGACGAATTGTAATCTCTGATACT 59.676 38.462 0.00 0.00 0.00 2.12
383 384 7.147724 TGGGACGAATTGTAATCTCTGATACTT 60.148 37.037 0.00 0.00 0.00 2.24
384 385 7.169982 GGGACGAATTGTAATCTCTGATACTTG 59.830 40.741 0.00 0.00 0.00 3.16
385 386 7.921214 GGACGAATTGTAATCTCTGATACTTGA 59.079 37.037 0.00 0.00 0.00 3.02
386 387 8.864069 ACGAATTGTAATCTCTGATACTTGAG 57.136 34.615 0.00 0.00 0.00 3.02
387 388 8.470805 ACGAATTGTAATCTCTGATACTTGAGT 58.529 33.333 0.00 0.00 0.00 3.41
388 389 9.952188 CGAATTGTAATCTCTGATACTTGAGTA 57.048 33.333 0.00 0.00 34.67 2.59
434 435 4.691326 AAATGTTAGTAGGAGGCCTAGC 57.309 45.455 4.42 0.00 36.71 3.42
456 457 4.627611 CAATGAATGGACTGGCAAGTAG 57.372 45.455 0.00 0.00 36.52 2.57
457 458 2.787473 TGAATGGACTGGCAAGTAGG 57.213 50.000 0.00 0.00 36.52 3.18
458 459 1.281867 TGAATGGACTGGCAAGTAGGG 59.718 52.381 0.00 0.00 36.52 3.53
459 460 0.034089 AATGGACTGGCAAGTAGGGC 60.034 55.000 0.00 0.00 36.52 5.19
536 537 0.673985 GGAGTGGACAAAGCCCAAAC 59.326 55.000 0.00 0.00 35.12 2.93
695 716 0.830648 CTTCCCGCTACTGGATCCAA 59.169 55.000 17.00 0.10 0.00 3.53
791 825 5.849510 TCGTCTTCTGATAAGGTTTTCACA 58.150 37.500 0.00 0.00 0.00 3.58
818 852 9.546428 AATTCTATTAAAGGTTTATGCCATTGC 57.454 29.630 0.00 0.00 38.26 3.56
1500 1534 2.424956 GCTGTTTTCTGGATGCCCTAAG 59.575 50.000 0.00 0.00 0.00 2.18
1530 1564 6.279882 AGAGTTAGAGCTGATATGCTGTTTC 58.720 40.000 0.00 0.00 44.17 2.78
1809 1843 1.367471 CGTCACCAGCTTGAGGTCA 59.633 57.895 0.00 0.00 37.23 4.02
2088 2122 5.412594 GCATTTTACAGATGTGAGTTCTCCA 59.587 40.000 0.00 0.00 0.00 3.86
2103 2137 5.420409 AGTTCTCCATTTTCCGATGTAGAC 58.580 41.667 0.00 0.00 0.00 2.59
2109 2143 4.640201 CCATTTTCCGATGTAGACCATTGT 59.360 41.667 0.00 0.00 33.63 2.71
2385 2420 6.295916 GCTATTTATAGGGGTCAGCATGTACT 60.296 42.308 0.00 0.00 37.40 2.73
2480 2515 5.467035 ACCAATAACACCATTTCCACTTG 57.533 39.130 0.00 0.00 0.00 3.16
2709 2828 8.057536 TGGTAATTGGTTGGTATGTGTTTATC 57.942 34.615 0.00 0.00 0.00 1.75
2734 2853 6.577800 CGTAACTCGGTTATCATGTAGACATC 59.422 42.308 0.00 0.00 33.20 3.06
2844 2964 5.258051 TGTGTTTTAGGACCAACTTGTTCT 58.742 37.500 0.00 0.00 0.00 3.01
2997 3120 6.379988 TCTGTTGTGAATAGCCTACTGATACA 59.620 38.462 0.00 0.00 0.00 2.29
3077 3205 7.797121 TGCTTCCATAATCTACTATCATGGA 57.203 36.000 0.00 0.00 42.58 3.41
3189 3317 0.178964 AATGTGGTGTGAAGGGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
3223 3351 1.868498 TCAACCATGTTCGGTTCGTTC 59.132 47.619 0.00 0.00 46.60 3.95
3342 3478 4.035909 ACATGTGTCGACAACCCTTAAAAC 59.964 41.667 21.95 4.08 35.11 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.552008 ACATTACAAGAAAAGGATGGAGGAA 58.448 36.000 0.00 0.00 0.00 3.36
1 2 6.139679 ACATTACAAGAAAAGGATGGAGGA 57.860 37.500 0.00 0.00 0.00 3.71
2 3 6.403636 CGAACATTACAAGAAAAGGATGGAGG 60.404 42.308 0.00 0.00 0.00 4.30
3 4 6.149474 ACGAACATTACAAGAAAAGGATGGAG 59.851 38.462 0.00 0.00 0.00 3.86
4 5 6.001460 ACGAACATTACAAGAAAAGGATGGA 58.999 36.000 0.00 0.00 0.00 3.41
5 6 6.254281 ACGAACATTACAAGAAAAGGATGG 57.746 37.500 0.00 0.00 0.00 3.51
6 7 9.840427 AAATACGAACATTACAAGAAAAGGATG 57.160 29.630 0.00 0.00 0.00 3.51
7 8 9.840427 CAAATACGAACATTACAAGAAAAGGAT 57.160 29.630 0.00 0.00 0.00 3.24
8 9 8.842280 ACAAATACGAACATTACAAGAAAAGGA 58.158 29.630 0.00 0.00 0.00 3.36
9 10 9.458374 AACAAATACGAACATTACAAGAAAAGG 57.542 29.630 0.00 0.00 0.00 3.11
13 14 9.239002 CCAAAACAAATACGAACATTACAAGAA 57.761 29.630 0.00 0.00 0.00 2.52
14 15 8.622157 TCCAAAACAAATACGAACATTACAAGA 58.378 29.630 0.00 0.00 0.00 3.02
15 16 8.789881 TCCAAAACAAATACGAACATTACAAG 57.210 30.769 0.00 0.00 0.00 3.16
16 17 8.407064 ACTCCAAAACAAATACGAACATTACAA 58.593 29.630 0.00 0.00 0.00 2.41
17 18 7.932335 ACTCCAAAACAAATACGAACATTACA 58.068 30.769 0.00 0.00 0.00 2.41
18 19 9.881529 TTACTCCAAAACAAATACGAACATTAC 57.118 29.630 0.00 0.00 0.00 1.89
19 20 9.881529 GTTACTCCAAAACAAATACGAACATTA 57.118 29.630 0.00 0.00 0.00 1.90
20 21 8.407064 TGTTACTCCAAAACAAATACGAACATT 58.593 29.630 0.00 0.00 34.04 2.71
21 22 7.858879 GTGTTACTCCAAAACAAATACGAACAT 59.141 33.333 0.00 0.00 38.50 2.71
22 23 7.066043 AGTGTTACTCCAAAACAAATACGAACA 59.934 33.333 0.00 0.00 38.50 3.18
23 24 7.412063 AGTGTTACTCCAAAACAAATACGAAC 58.588 34.615 0.00 0.00 38.50 3.95
24 25 7.556733 AGTGTTACTCCAAAACAAATACGAA 57.443 32.000 0.00 0.00 38.50 3.85
25 26 7.066043 ACAAGTGTTACTCCAAAACAAATACGA 59.934 33.333 0.00 0.00 38.50 3.43
26 27 7.190871 ACAAGTGTTACTCCAAAACAAATACG 58.809 34.615 0.00 0.00 38.50 3.06
29 30 9.528018 CATTACAAGTGTTACTCCAAAACAAAT 57.472 29.630 0.00 0.00 38.50 2.32
30 31 8.524487 ACATTACAAGTGTTACTCCAAAACAAA 58.476 29.630 0.00 0.00 38.50 2.83
31 32 8.057536 ACATTACAAGTGTTACTCCAAAACAA 57.942 30.769 0.00 0.00 38.50 2.83
32 33 7.633193 ACATTACAAGTGTTACTCCAAAACA 57.367 32.000 0.00 0.00 34.56 2.83
33 34 9.659830 CTAACATTACAAGTGTTACTCCAAAAC 57.340 33.333 0.00 0.00 40.13 2.43
34 35 9.616156 TCTAACATTACAAGTGTTACTCCAAAA 57.384 29.630 0.00 0.00 40.13 2.44
35 36 9.268268 CTCTAACATTACAAGTGTTACTCCAAA 57.732 33.333 0.00 0.00 40.13 3.28
36 37 8.426489 ACTCTAACATTACAAGTGTTACTCCAA 58.574 33.333 0.00 0.00 40.13 3.53
37 38 7.959175 ACTCTAACATTACAAGTGTTACTCCA 58.041 34.615 0.00 0.00 40.13 3.86
38 39 8.828688 AACTCTAACATTACAAGTGTTACTCC 57.171 34.615 0.00 0.00 40.13 3.85
43 44 8.557029 GCAAGTAACTCTAACATTACAAGTGTT 58.443 33.333 0.00 0.00 42.12 3.32
44 45 7.713507 TGCAAGTAACTCTAACATTACAAGTGT 59.286 33.333 0.00 0.00 34.36 3.55
45 46 8.083462 TGCAAGTAACTCTAACATTACAAGTG 57.917 34.615 0.00 0.00 34.36 3.16
46 47 8.671384 TTGCAAGTAACTCTAACATTACAAGT 57.329 30.769 0.00 0.00 34.36 3.16
51 52 9.391006 CCCTTATTGCAAGTAACTCTAACATTA 57.609 33.333 4.94 0.00 0.00 1.90
52 53 8.107095 TCCCTTATTGCAAGTAACTCTAACATT 58.893 33.333 4.94 0.00 0.00 2.71
53 54 7.630082 TCCCTTATTGCAAGTAACTCTAACAT 58.370 34.615 4.94 0.00 0.00 2.71
54 55 7.011499 TCCCTTATTGCAAGTAACTCTAACA 57.989 36.000 4.94 0.00 0.00 2.41
55 56 6.539103 CCTCCCTTATTGCAAGTAACTCTAAC 59.461 42.308 4.94 0.00 0.00 2.34
56 57 6.352737 CCCTCCCTTATTGCAAGTAACTCTAA 60.353 42.308 4.94 0.00 0.00 2.10
57 58 5.130477 CCCTCCCTTATTGCAAGTAACTCTA 59.870 44.000 4.94 0.00 0.00 2.43
58 59 4.080299 CCCTCCCTTATTGCAAGTAACTCT 60.080 45.833 4.94 0.00 0.00 3.24
59 60 4.080526 TCCCTCCCTTATTGCAAGTAACTC 60.081 45.833 4.94 0.00 0.00 3.01
60 61 3.850173 TCCCTCCCTTATTGCAAGTAACT 59.150 43.478 4.94 0.00 0.00 2.24
61 62 4.230745 TCCCTCCCTTATTGCAAGTAAC 57.769 45.455 4.94 0.00 0.00 2.50
62 63 4.938575 TTCCCTCCCTTATTGCAAGTAA 57.061 40.909 4.94 3.51 0.00 2.24
63 64 5.466127 AATTCCCTCCCTTATTGCAAGTA 57.534 39.130 4.94 0.00 0.00 2.24
64 65 4.337264 AATTCCCTCCCTTATTGCAAGT 57.663 40.909 4.94 0.00 0.00 3.16
65 66 4.958581 AGAAATTCCCTCCCTTATTGCAAG 59.041 41.667 4.94 0.00 0.00 4.01
66 67 4.946646 AGAAATTCCCTCCCTTATTGCAA 58.053 39.130 0.00 0.00 0.00 4.08
67 68 4.608170 AGAAATTCCCTCCCTTATTGCA 57.392 40.909 0.00 0.00 0.00 4.08
68 69 5.395657 CCAAAGAAATTCCCTCCCTTATTGC 60.396 44.000 0.00 0.00 0.00 3.56
69 70 5.395657 GCCAAAGAAATTCCCTCCCTTATTG 60.396 44.000 0.00 0.00 0.00 1.90
70 71 4.716784 GCCAAAGAAATTCCCTCCCTTATT 59.283 41.667 0.00 0.00 0.00 1.40
71 72 4.290093 GCCAAAGAAATTCCCTCCCTTAT 58.710 43.478 0.00 0.00 0.00 1.73
72 73 3.565670 GGCCAAAGAAATTCCCTCCCTTA 60.566 47.826 0.00 0.00 0.00 2.69
73 74 2.540383 GCCAAAGAAATTCCCTCCCTT 58.460 47.619 0.00 0.00 0.00 3.95
74 75 1.273267 GGCCAAAGAAATTCCCTCCCT 60.273 52.381 0.00 0.00 0.00 4.20
75 76 1.195115 GGCCAAAGAAATTCCCTCCC 58.805 55.000 0.00 0.00 0.00 4.30
76 77 1.195115 GGGCCAAAGAAATTCCCTCC 58.805 55.000 4.39 0.00 34.19 4.30
77 78 2.238084 AGGGCCAAAGAAATTCCCTC 57.762 50.000 6.18 0.00 43.53 4.30
79 80 2.234661 CTGAAGGGCCAAAGAAATTCCC 59.765 50.000 6.18 0.00 37.24 3.97
80 81 2.899900 ACTGAAGGGCCAAAGAAATTCC 59.100 45.455 6.18 0.00 0.00 3.01
81 82 3.306294 CCACTGAAGGGCCAAAGAAATTC 60.306 47.826 6.18 0.00 0.00 2.17
82 83 2.634453 CCACTGAAGGGCCAAAGAAATT 59.366 45.455 6.18 0.00 0.00 1.82
83 84 2.158325 TCCACTGAAGGGCCAAAGAAAT 60.158 45.455 6.18 0.00 0.00 2.17
84 85 1.216678 TCCACTGAAGGGCCAAAGAAA 59.783 47.619 6.18 0.00 0.00 2.52
85 86 0.850100 TCCACTGAAGGGCCAAAGAA 59.150 50.000 6.18 0.00 0.00 2.52
86 87 0.401738 CTCCACTGAAGGGCCAAAGA 59.598 55.000 6.18 0.00 0.00 2.52
87 88 1.246737 GCTCCACTGAAGGGCCAAAG 61.247 60.000 6.18 1.97 0.00 2.77
88 89 1.228552 GCTCCACTGAAGGGCCAAA 60.229 57.895 6.18 0.00 0.00 3.28
89 90 1.792757 ATGCTCCACTGAAGGGCCAA 61.793 55.000 6.18 0.00 0.00 4.52
90 91 2.202236 GATGCTCCACTGAAGGGCCA 62.202 60.000 6.18 0.00 0.00 5.36
91 92 1.452833 GATGCTCCACTGAAGGGCC 60.453 63.158 0.00 0.00 0.00 5.80
92 93 0.034670 AAGATGCTCCACTGAAGGGC 60.035 55.000 0.00 0.00 0.00 5.19
93 94 1.747709 CAAGATGCTCCACTGAAGGG 58.252 55.000 0.00 0.00 0.00 3.95
94 95 1.093159 GCAAGATGCTCCACTGAAGG 58.907 55.000 0.00 0.00 40.96 3.46
95 96 1.093159 GGCAAGATGCTCCACTGAAG 58.907 55.000 2.00 0.00 44.28 3.02
96 97 0.401356 TGGCAAGATGCTCCACTGAA 59.599 50.000 2.00 0.00 44.28 3.02
97 98 0.622136 ATGGCAAGATGCTCCACTGA 59.378 50.000 2.00 0.00 44.28 3.41
98 99 1.022735 GATGGCAAGATGCTCCACTG 58.977 55.000 2.00 0.00 44.28 3.66
99 100 0.622136 TGATGGCAAGATGCTCCACT 59.378 50.000 2.00 0.00 44.28 4.00
100 101 1.022735 CTGATGGCAAGATGCTCCAC 58.977 55.000 2.00 0.00 44.28 4.02
101 102 0.913924 TCTGATGGCAAGATGCTCCA 59.086 50.000 2.00 0.00 44.28 3.86
102 103 1.880675 CATCTGATGGCAAGATGCTCC 59.119 52.381 14.41 0.00 44.28 4.70
103 104 2.290916 CACATCTGATGGCAAGATGCTC 59.709 50.000 22.90 3.15 44.28 4.26
104 105 2.298610 CACATCTGATGGCAAGATGCT 58.701 47.619 22.90 11.61 44.28 3.79
105 106 1.337071 CCACATCTGATGGCAAGATGC 59.663 52.381 22.90 0.00 42.10 3.91
106 107 2.879026 CTCCACATCTGATGGCAAGATG 59.121 50.000 21.86 21.86 43.47 2.90
107 108 2.508716 ACTCCACATCTGATGGCAAGAT 59.491 45.455 20.83 0.00 37.13 2.40
108 109 1.911357 ACTCCACATCTGATGGCAAGA 59.089 47.619 20.83 10.69 37.13 3.02
109 110 2.093075 AGACTCCACATCTGATGGCAAG 60.093 50.000 20.83 15.49 37.13 4.01
110 111 1.911357 AGACTCCACATCTGATGGCAA 59.089 47.619 20.83 5.46 37.13 4.52
111 112 1.208776 CAGACTCCACATCTGATGGCA 59.791 52.381 20.83 0.00 45.46 4.92
112 113 1.483827 TCAGACTCCACATCTGATGGC 59.516 52.381 20.83 0.00 46.01 4.40
117 118 6.401394 TCTAAACAATCAGACTCCACATCTG 58.599 40.000 0.00 0.00 44.22 2.90
118 119 6.351711 CCTCTAAACAATCAGACTCCACATCT 60.352 42.308 0.00 0.00 0.00 2.90
119 120 5.814705 CCTCTAAACAATCAGACTCCACATC 59.185 44.000 0.00 0.00 0.00 3.06
120 121 5.738909 CCTCTAAACAATCAGACTCCACAT 58.261 41.667 0.00 0.00 0.00 3.21
121 122 4.563580 GCCTCTAAACAATCAGACTCCACA 60.564 45.833 0.00 0.00 0.00 4.17
122 123 3.935828 GCCTCTAAACAATCAGACTCCAC 59.064 47.826 0.00 0.00 0.00 4.02
123 124 3.840666 AGCCTCTAAACAATCAGACTCCA 59.159 43.478 0.00 0.00 0.00 3.86
124 125 4.187694 CAGCCTCTAAACAATCAGACTCC 58.812 47.826 0.00 0.00 0.00 3.85
125 126 4.826556 ACAGCCTCTAAACAATCAGACTC 58.173 43.478 0.00 0.00 0.00 3.36
126 127 4.899352 ACAGCCTCTAAACAATCAGACT 57.101 40.909 0.00 0.00 0.00 3.24
127 128 7.617041 ATTAACAGCCTCTAAACAATCAGAC 57.383 36.000 0.00 0.00 0.00 3.51
128 129 9.330063 CATATTAACAGCCTCTAAACAATCAGA 57.670 33.333 0.00 0.00 0.00 3.27
129 130 9.330063 TCATATTAACAGCCTCTAAACAATCAG 57.670 33.333 0.00 0.00 0.00 2.90
130 131 9.851686 ATCATATTAACAGCCTCTAAACAATCA 57.148 29.630 0.00 0.00 0.00 2.57
139 140 9.566432 CCTCTTTTAATCATATTAACAGCCTCT 57.434 33.333 0.00 0.00 0.00 3.69
140 141 8.787852 CCCTCTTTTAATCATATTAACAGCCTC 58.212 37.037 0.00 0.00 0.00 4.70
141 142 8.502738 TCCCTCTTTTAATCATATTAACAGCCT 58.497 33.333 0.00 0.00 0.00 4.58
142 143 8.691661 TCCCTCTTTTAATCATATTAACAGCC 57.308 34.615 0.00 0.00 0.00 4.85
150 151 9.866655 TGTTGCTATTCCCTCTTTTAATCATAT 57.133 29.630 0.00 0.00 0.00 1.78
151 152 9.693739 TTGTTGCTATTCCCTCTTTTAATCATA 57.306 29.630 0.00 0.00 0.00 2.15
152 153 8.593945 TTGTTGCTATTCCCTCTTTTAATCAT 57.406 30.769 0.00 0.00 0.00 2.45
153 154 8.415950 TTTGTTGCTATTCCCTCTTTTAATCA 57.584 30.769 0.00 0.00 0.00 2.57
154 155 9.521503 GATTTGTTGCTATTCCCTCTTTTAATC 57.478 33.333 0.00 0.00 0.00 1.75
155 156 9.259832 AGATTTGTTGCTATTCCCTCTTTTAAT 57.740 29.630 0.00 0.00 0.00 1.40
156 157 8.650143 AGATTTGTTGCTATTCCCTCTTTTAA 57.350 30.769 0.00 0.00 0.00 1.52
157 158 9.747898 TTAGATTTGTTGCTATTCCCTCTTTTA 57.252 29.630 0.00 0.00 0.00 1.52
158 159 8.650143 TTAGATTTGTTGCTATTCCCTCTTTT 57.350 30.769 0.00 0.00 0.00 2.27
159 160 8.650143 TTTAGATTTGTTGCTATTCCCTCTTT 57.350 30.769 0.00 0.00 0.00 2.52
160 161 8.829373 ATTTAGATTTGTTGCTATTCCCTCTT 57.171 30.769 0.00 0.00 0.00 2.85
163 164 8.579863 GCATATTTAGATTTGTTGCTATTCCCT 58.420 33.333 0.00 0.00 0.00 4.20
164 165 8.579863 AGCATATTTAGATTTGTTGCTATTCCC 58.420 33.333 0.00 0.00 37.21 3.97
165 166 9.971922 AAGCATATTTAGATTTGTTGCTATTCC 57.028 29.630 0.00 0.00 37.95 3.01
170 171 9.525409 GATGAAAGCATATTTAGATTTGTTGCT 57.475 29.630 0.00 0.00 40.43 3.91
171 172 9.304731 TGATGAAAGCATATTTAGATTTGTTGC 57.695 29.630 0.00 0.00 34.11 4.17
187 188 5.609533 TGATCTCTCTGATGATGAAAGCA 57.390 39.130 0.00 0.00 35.55 3.91
188 189 7.874016 ACTAATGATCTCTCTGATGATGAAAGC 59.126 37.037 0.00 0.00 35.14 3.51
191 192 9.585369 ACTACTAATGATCTCTCTGATGATGAA 57.415 33.333 0.00 0.00 35.14 2.57
192 193 9.585369 AACTACTAATGATCTCTCTGATGATGA 57.415 33.333 0.00 0.00 35.14 2.92
195 196 8.637099 CCAAACTACTAATGATCTCTCTGATGA 58.363 37.037 0.00 0.00 35.14 2.92
196 197 7.871973 CCCAAACTACTAATGATCTCTCTGATG 59.128 40.741 0.00 0.00 35.14 3.07
197 198 7.786943 TCCCAAACTACTAATGATCTCTCTGAT 59.213 37.037 0.00 0.00 38.27 2.90
198 199 7.126061 TCCCAAACTACTAATGATCTCTCTGA 58.874 38.462 0.00 0.00 0.00 3.27
199 200 7.286546 TCTCCCAAACTACTAATGATCTCTCTG 59.713 40.741 0.00 0.00 0.00 3.35
200 201 7.358263 TCTCCCAAACTACTAATGATCTCTCT 58.642 38.462 0.00 0.00 0.00 3.10
201 202 7.589958 TCTCCCAAACTACTAATGATCTCTC 57.410 40.000 0.00 0.00 0.00 3.20
202 203 7.979786 TTCTCCCAAACTACTAATGATCTCT 57.020 36.000 0.00 0.00 0.00 3.10
203 204 7.713073 CCTTTCTCCCAAACTACTAATGATCTC 59.287 40.741 0.00 0.00 0.00 2.75
204 205 7.403231 TCCTTTCTCCCAAACTACTAATGATCT 59.597 37.037 0.00 0.00 0.00 2.75
205 206 7.565680 TCCTTTCTCCCAAACTACTAATGATC 58.434 38.462 0.00 0.00 0.00 2.92
206 207 7.510675 TCCTTTCTCCCAAACTACTAATGAT 57.489 36.000 0.00 0.00 0.00 2.45
207 208 6.945636 TCCTTTCTCCCAAACTACTAATGA 57.054 37.500 0.00 0.00 0.00 2.57
208 209 8.581253 AATTCCTTTCTCCCAAACTACTAATG 57.419 34.615 0.00 0.00 0.00 1.90
209 210 8.615705 AGAATTCCTTTCTCCCAAACTACTAAT 58.384 33.333 0.65 0.00 40.86 1.73
210 211 7.985589 AGAATTCCTTTCTCCCAAACTACTAA 58.014 34.615 0.65 0.00 40.86 2.24
211 212 7.569599 AGAATTCCTTTCTCCCAAACTACTA 57.430 36.000 0.65 0.00 40.86 1.82
212 213 6.455690 AGAATTCCTTTCTCCCAAACTACT 57.544 37.500 0.65 0.00 40.86 2.57
213 214 6.570571 GCAAGAATTCCTTTCTCCCAAACTAC 60.571 42.308 0.65 0.00 44.09 2.73
214 215 5.476945 GCAAGAATTCCTTTCTCCCAAACTA 59.523 40.000 0.65 0.00 44.09 2.24
215 216 4.281941 GCAAGAATTCCTTTCTCCCAAACT 59.718 41.667 0.65 0.00 44.09 2.66
216 217 4.039124 TGCAAGAATTCCTTTCTCCCAAAC 59.961 41.667 0.65 0.00 44.09 2.93
217 218 4.222336 TGCAAGAATTCCTTTCTCCCAAA 58.778 39.130 0.65 0.00 44.09 3.28
218 219 3.843422 TGCAAGAATTCCTTTCTCCCAA 58.157 40.909 0.65 0.00 44.09 4.12
219 220 3.524095 TGCAAGAATTCCTTTCTCCCA 57.476 42.857 0.65 0.00 44.09 4.37
220 221 5.654209 AGTAATGCAAGAATTCCTTTCTCCC 59.346 40.000 0.65 0.00 44.09 4.30
221 222 6.375455 TGAGTAATGCAAGAATTCCTTTCTCC 59.625 38.462 0.65 0.00 44.09 3.71
222 223 7.383102 TGAGTAATGCAAGAATTCCTTTCTC 57.617 36.000 0.65 2.85 44.09 2.87
223 224 7.951347 ATGAGTAATGCAAGAATTCCTTTCT 57.049 32.000 0.65 0.00 46.92 2.52
226 227 8.562892 CGAATATGAGTAATGCAAGAATTCCTT 58.437 33.333 0.65 0.00 34.91 3.36
227 228 7.308229 GCGAATATGAGTAATGCAAGAATTCCT 60.308 37.037 0.65 0.00 0.00 3.36
228 229 6.798959 GCGAATATGAGTAATGCAAGAATTCC 59.201 38.462 0.65 0.00 0.00 3.01
229 230 6.798959 GGCGAATATGAGTAATGCAAGAATTC 59.201 38.462 0.00 0.00 0.00 2.17
230 231 6.566564 CGGCGAATATGAGTAATGCAAGAATT 60.567 38.462 0.00 0.00 0.00 2.17
231 232 5.106948 CGGCGAATATGAGTAATGCAAGAAT 60.107 40.000 0.00 0.00 0.00 2.40
232 233 4.211164 CGGCGAATATGAGTAATGCAAGAA 59.789 41.667 0.00 0.00 0.00 2.52
233 234 3.740832 CGGCGAATATGAGTAATGCAAGA 59.259 43.478 0.00 0.00 0.00 3.02
234 235 3.120546 CCGGCGAATATGAGTAATGCAAG 60.121 47.826 9.30 0.00 0.00 4.01
235 236 2.805671 CCGGCGAATATGAGTAATGCAA 59.194 45.455 9.30 0.00 0.00 4.08
236 237 2.036604 TCCGGCGAATATGAGTAATGCA 59.963 45.455 9.30 0.00 0.00 3.96
237 238 2.668457 CTCCGGCGAATATGAGTAATGC 59.332 50.000 9.30 0.00 0.00 3.56
238 239 2.668457 GCTCCGGCGAATATGAGTAATG 59.332 50.000 9.30 0.00 0.00 1.90
239 240 2.563179 AGCTCCGGCGAATATGAGTAAT 59.437 45.455 9.30 0.00 44.37 1.89
240 241 1.961394 AGCTCCGGCGAATATGAGTAA 59.039 47.619 9.30 0.00 44.37 2.24
241 242 1.269723 CAGCTCCGGCGAATATGAGTA 59.730 52.381 9.30 0.00 44.37 2.59
242 243 0.032678 CAGCTCCGGCGAATATGAGT 59.967 55.000 9.30 0.00 44.37 3.41
243 244 0.032678 ACAGCTCCGGCGAATATGAG 59.967 55.000 9.30 7.15 44.37 2.90
244 245 1.324383 TACAGCTCCGGCGAATATGA 58.676 50.000 9.30 0.00 44.37 2.15
245 246 2.148916 TTACAGCTCCGGCGAATATG 57.851 50.000 9.30 4.40 44.37 1.78
246 247 4.495422 CTTATTACAGCTCCGGCGAATAT 58.505 43.478 9.30 0.00 44.37 1.28
247 248 3.305813 CCTTATTACAGCTCCGGCGAATA 60.306 47.826 9.30 0.00 44.37 1.75
248 249 2.548067 CCTTATTACAGCTCCGGCGAAT 60.548 50.000 9.30 0.00 44.37 3.34
249 250 1.202486 CCTTATTACAGCTCCGGCGAA 60.202 52.381 9.30 0.00 44.37 4.70
250 251 0.387929 CCTTATTACAGCTCCGGCGA 59.612 55.000 9.30 0.00 44.37 5.54
251 252 0.104304 ACCTTATTACAGCTCCGGCG 59.896 55.000 0.00 0.00 44.37 6.46
252 253 2.327200 AACCTTATTACAGCTCCGGC 57.673 50.000 0.00 0.00 39.06 6.13
253 254 4.098960 TGACTAACCTTATTACAGCTCCGG 59.901 45.833 0.00 0.00 0.00 5.14
254 255 5.258456 TGACTAACCTTATTACAGCTCCG 57.742 43.478 0.00 0.00 0.00 4.63
255 256 5.467063 GCATGACTAACCTTATTACAGCTCC 59.533 44.000 0.00 0.00 0.00 4.70
256 257 5.467063 GGCATGACTAACCTTATTACAGCTC 59.533 44.000 0.00 0.00 0.00 4.09
257 258 5.131142 AGGCATGACTAACCTTATTACAGCT 59.869 40.000 0.00 0.00 0.00 4.24
258 259 5.368989 AGGCATGACTAACCTTATTACAGC 58.631 41.667 0.00 0.00 0.00 4.40
259 260 6.260936 CCAAGGCATGACTAACCTTATTACAG 59.739 42.308 0.00 0.00 41.90 2.74
260 261 6.119536 CCAAGGCATGACTAACCTTATTACA 58.880 40.000 0.00 0.00 41.90 2.41
261 262 5.008712 GCCAAGGCATGACTAACCTTATTAC 59.991 44.000 0.00 0.00 41.90 1.89
262 263 5.130350 GCCAAGGCATGACTAACCTTATTA 58.870 41.667 0.00 0.00 41.90 0.98
263 264 3.954258 GCCAAGGCATGACTAACCTTATT 59.046 43.478 0.00 0.00 41.90 1.40
264 265 3.555966 GCCAAGGCATGACTAACCTTAT 58.444 45.455 0.00 0.00 41.90 1.73
265 266 2.999331 GCCAAGGCATGACTAACCTTA 58.001 47.619 0.00 0.00 41.90 2.69
266 267 1.839424 GCCAAGGCATGACTAACCTT 58.161 50.000 0.00 0.00 44.66 3.50
267 268 3.577389 GCCAAGGCATGACTAACCT 57.423 52.632 0.00 0.00 41.49 3.50
278 279 2.038426 ACCTACCAAAATTTGCCAAGGC 59.962 45.455 14.85 3.61 42.35 4.35
279 280 4.064388 CAACCTACCAAAATTTGCCAAGG 58.936 43.478 13.89 13.89 0.00 3.61
280 281 3.498018 GCAACCTACCAAAATTTGCCAAG 59.502 43.478 0.00 0.00 37.24 3.61
281 282 3.118261 TGCAACCTACCAAAATTTGCCAA 60.118 39.130 0.00 0.00 41.53 4.52
282 283 2.435805 TGCAACCTACCAAAATTTGCCA 59.564 40.909 0.00 0.00 41.53 4.92
283 284 3.118905 TGCAACCTACCAAAATTTGCC 57.881 42.857 0.00 0.00 41.53 4.52
284 285 3.059935 CGTTGCAACCTACCAAAATTTGC 60.060 43.478 23.42 0.00 42.37 3.68
285 286 3.059935 GCGTTGCAACCTACCAAAATTTG 60.060 43.478 23.42 6.00 0.00 2.32
286 287 3.127589 GCGTTGCAACCTACCAAAATTT 58.872 40.909 23.42 0.00 0.00 1.82
287 288 2.547007 GGCGTTGCAACCTACCAAAATT 60.547 45.455 23.42 0.00 0.00 1.82
288 289 1.000394 GGCGTTGCAACCTACCAAAAT 60.000 47.619 23.42 0.00 0.00 1.82
289 290 0.386113 GGCGTTGCAACCTACCAAAA 59.614 50.000 23.42 0.00 0.00 2.44
290 291 1.787057 CGGCGTTGCAACCTACCAAA 61.787 55.000 23.42 0.00 0.00 3.28
291 292 2.255172 CGGCGTTGCAACCTACCAA 61.255 57.895 23.42 0.00 0.00 3.67
292 293 2.661840 TTCGGCGTTGCAACCTACCA 62.662 55.000 23.42 10.44 0.00 3.25
293 294 1.962306 TTCGGCGTTGCAACCTACC 60.962 57.895 23.42 19.78 0.00 3.18
294 295 1.205820 GTTCGGCGTTGCAACCTAC 59.794 57.895 23.42 12.98 0.00 3.18
295 296 0.317799 TAGTTCGGCGTTGCAACCTA 59.682 50.000 23.42 14.24 0.00 3.08
296 297 0.321298 ATAGTTCGGCGTTGCAACCT 60.321 50.000 23.42 15.21 0.00 3.50
297 298 0.179200 CATAGTTCGGCGTTGCAACC 60.179 55.000 23.42 15.51 0.00 3.77
298 299 0.179200 CCATAGTTCGGCGTTGCAAC 60.179 55.000 19.89 19.89 0.00 4.17
299 300 0.604243 ACCATAGTTCGGCGTTGCAA 60.604 50.000 6.85 0.00 0.00 4.08
300 301 0.604243 AACCATAGTTCGGCGTTGCA 60.604 50.000 6.85 0.00 0.00 4.08
301 302 0.519961 AAACCATAGTTCGGCGTTGC 59.480 50.000 6.85 0.00 34.19 4.17
302 303 1.135803 CCAAACCATAGTTCGGCGTTG 60.136 52.381 6.85 0.00 34.19 4.10
303 304 1.161843 CCAAACCATAGTTCGGCGTT 58.838 50.000 6.85 0.00 34.19 4.84
304 305 1.303091 GCCAAACCATAGTTCGGCGT 61.303 55.000 6.85 0.00 45.74 5.68
305 306 1.427819 GCCAAACCATAGTTCGGCG 59.572 57.895 0.00 0.00 45.74 6.46
307 308 2.561569 CCTAGCCAAACCATAGTTCGG 58.438 52.381 0.00 0.00 34.19 4.30
308 309 1.940613 GCCTAGCCAAACCATAGTTCG 59.059 52.381 0.00 0.00 34.19 3.95
309 310 2.683362 GTGCCTAGCCAAACCATAGTTC 59.317 50.000 0.00 0.00 34.19 3.01
310 311 2.308866 AGTGCCTAGCCAAACCATAGTT 59.691 45.455 0.00 0.00 38.03 2.24
311 312 1.916181 AGTGCCTAGCCAAACCATAGT 59.084 47.619 0.00 0.00 0.00 2.12
312 313 2.292267 CAGTGCCTAGCCAAACCATAG 58.708 52.381 0.00 0.00 0.00 2.23
313 314 1.064758 CCAGTGCCTAGCCAAACCATA 60.065 52.381 0.00 0.00 0.00 2.74
314 315 0.323725 CCAGTGCCTAGCCAAACCAT 60.324 55.000 0.00 0.00 0.00 3.55
315 316 1.074775 CCAGTGCCTAGCCAAACCA 59.925 57.895 0.00 0.00 0.00 3.67
316 317 0.960861 GACCAGTGCCTAGCCAAACC 60.961 60.000 0.00 0.00 0.00 3.27
317 318 0.960861 GGACCAGTGCCTAGCCAAAC 60.961 60.000 0.00 0.00 0.00 2.93
318 319 1.378762 GGACCAGTGCCTAGCCAAA 59.621 57.895 0.00 0.00 0.00 3.28
319 320 2.954684 CGGACCAGTGCCTAGCCAA 61.955 63.158 0.00 0.00 0.00 4.52
320 321 3.390521 CGGACCAGTGCCTAGCCA 61.391 66.667 0.00 0.00 0.00 4.75
321 322 4.162690 CCGGACCAGTGCCTAGCC 62.163 72.222 0.00 0.00 0.00 3.93
322 323 2.579684 CTTCCGGACCAGTGCCTAGC 62.580 65.000 1.83 0.00 0.00 3.42
323 324 0.970937 TCTTCCGGACCAGTGCCTAG 60.971 60.000 1.83 0.00 0.00 3.02
324 325 0.325296 ATCTTCCGGACCAGTGCCTA 60.325 55.000 1.83 0.00 0.00 3.93
325 326 1.613630 ATCTTCCGGACCAGTGCCT 60.614 57.895 1.83 0.00 0.00 4.75
326 327 1.450312 CATCTTCCGGACCAGTGCC 60.450 63.158 1.83 0.00 0.00 5.01
327 328 0.321653 AACATCTTCCGGACCAGTGC 60.322 55.000 1.83 0.00 0.00 4.40
328 329 2.185004 AAACATCTTCCGGACCAGTG 57.815 50.000 1.83 3.49 0.00 3.66
329 330 2.504367 CAAAACATCTTCCGGACCAGT 58.496 47.619 1.83 0.00 0.00 4.00
330 331 1.812571 CCAAAACATCTTCCGGACCAG 59.187 52.381 1.83 0.00 0.00 4.00
331 332 1.904287 CCAAAACATCTTCCGGACCA 58.096 50.000 1.83 0.00 0.00 4.02
332 333 0.526211 GCCAAAACATCTTCCGGACC 59.474 55.000 1.83 0.00 0.00 4.46
333 334 1.068541 GTGCCAAAACATCTTCCGGAC 60.069 52.381 1.83 0.00 0.00 4.79
334 335 1.202879 AGTGCCAAAACATCTTCCGGA 60.203 47.619 0.00 0.00 0.00 5.14
335 336 1.247567 AGTGCCAAAACATCTTCCGG 58.752 50.000 0.00 0.00 0.00 5.14
336 337 2.034558 ACAAGTGCCAAAACATCTTCCG 59.965 45.455 0.00 0.00 0.00 4.30
337 338 3.383761 CACAAGTGCCAAAACATCTTCC 58.616 45.455 0.00 0.00 0.00 3.46
338 339 3.383761 CCACAAGTGCCAAAACATCTTC 58.616 45.455 0.00 0.00 0.00 2.87
339 340 2.102925 CCCACAAGTGCCAAAACATCTT 59.897 45.455 0.00 0.00 0.00 2.40
340 341 1.688197 CCCACAAGTGCCAAAACATCT 59.312 47.619 0.00 0.00 0.00 2.90
341 342 1.686052 TCCCACAAGTGCCAAAACATC 59.314 47.619 0.00 0.00 0.00 3.06
342 343 1.412343 GTCCCACAAGTGCCAAAACAT 59.588 47.619 0.00 0.00 0.00 2.71
343 344 0.820871 GTCCCACAAGTGCCAAAACA 59.179 50.000 0.00 0.00 0.00 2.83
344 345 0.248866 CGTCCCACAAGTGCCAAAAC 60.249 55.000 0.00 0.00 0.00 2.43
345 346 0.394488 TCGTCCCACAAGTGCCAAAA 60.394 50.000 0.00 0.00 0.00 2.44
346 347 0.394488 TTCGTCCCACAAGTGCCAAA 60.394 50.000 0.00 0.00 0.00 3.28
347 348 0.179004 ATTCGTCCCACAAGTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
348 349 0.179004 AATTCGTCCCACAAGTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
349 350 0.240945 CAATTCGTCCCACAAGTGCC 59.759 55.000 0.00 0.00 0.00 5.01
350 351 0.951558 ACAATTCGTCCCACAAGTGC 59.048 50.000 0.00 0.00 0.00 4.40
351 352 4.695455 AGATTACAATTCGTCCCACAAGTG 59.305 41.667 0.00 0.00 0.00 3.16
352 353 4.906618 AGATTACAATTCGTCCCACAAGT 58.093 39.130 0.00 0.00 0.00 3.16
353 354 5.063944 CAGAGATTACAATTCGTCCCACAAG 59.936 44.000 0.00 0.00 0.00 3.16
354 355 4.935205 CAGAGATTACAATTCGTCCCACAA 59.065 41.667 0.00 0.00 0.00 3.33
355 356 4.221924 TCAGAGATTACAATTCGTCCCACA 59.778 41.667 0.00 0.00 0.00 4.17
356 357 4.755411 TCAGAGATTACAATTCGTCCCAC 58.245 43.478 0.00 0.00 0.00 4.61
357 358 5.614324 ATCAGAGATTACAATTCGTCCCA 57.386 39.130 0.00 0.00 0.00 4.37
358 359 6.750148 AGTATCAGAGATTACAATTCGTCCC 58.250 40.000 0.00 0.00 0.00 4.46
359 360 7.921214 TCAAGTATCAGAGATTACAATTCGTCC 59.079 37.037 0.00 0.00 0.00 4.79
360 361 8.858003 TCAAGTATCAGAGATTACAATTCGTC 57.142 34.615 0.00 0.00 0.00 4.20
361 362 8.470805 ACTCAAGTATCAGAGATTACAATTCGT 58.529 33.333 0.00 0.00 35.83 3.85
362 363 8.864069 ACTCAAGTATCAGAGATTACAATTCG 57.136 34.615 0.00 0.00 35.83 3.34
411 412 5.437946 GCTAGGCCTCCTACTAACATTTTT 58.562 41.667 9.68 0.00 34.61 1.94
412 413 4.141459 GGCTAGGCCTCCTACTAACATTTT 60.141 45.833 9.68 0.00 46.69 1.82
413 414 3.391626 GGCTAGGCCTCCTACTAACATTT 59.608 47.826 9.68 0.00 46.69 2.32
414 415 2.973406 GGCTAGGCCTCCTACTAACATT 59.027 50.000 9.68 0.00 46.69 2.71
415 416 2.610873 GGCTAGGCCTCCTACTAACAT 58.389 52.381 9.68 0.00 46.69 2.71
416 417 2.083628 GGCTAGGCCTCCTACTAACA 57.916 55.000 9.68 0.00 46.69 2.41
428 429 1.952296 CAGTCCATTCATTGGCTAGGC 59.048 52.381 9.85 9.85 46.01 3.93
429 430 2.579873 CCAGTCCATTCATTGGCTAGG 58.420 52.381 0.00 0.00 46.01 3.02
435 436 3.379372 CCTACTTGCCAGTCCATTCATTG 59.621 47.826 0.00 0.00 34.06 2.82
436 437 3.624777 CCTACTTGCCAGTCCATTCATT 58.375 45.455 0.00 0.00 34.06 2.57
437 438 2.092212 CCCTACTTGCCAGTCCATTCAT 60.092 50.000 0.00 0.00 34.06 2.57
438 439 1.281867 CCCTACTTGCCAGTCCATTCA 59.718 52.381 0.00 0.00 34.06 2.57
439 440 2.019156 GCCCTACTTGCCAGTCCATTC 61.019 57.143 0.00 0.00 34.06 2.67
440 441 0.034089 GCCCTACTTGCCAGTCCATT 60.034 55.000 0.00 0.00 34.06 3.16
441 442 1.609783 GCCCTACTTGCCAGTCCAT 59.390 57.895 0.00 0.00 34.06 3.41
442 443 3.077907 GCCCTACTTGCCAGTCCA 58.922 61.111 0.00 0.00 34.06 4.02
508 509 0.391597 TTGTCCACTCCGGTGAAGAC 59.608 55.000 11.17 15.41 45.61 3.01
521 522 3.849064 CCGTTTGGGCTTTGTCCA 58.151 55.556 0.00 0.00 34.47 4.02
547 554 3.767806 CGCCTGCTGAGAGGAGCA 61.768 66.667 0.00 0.00 46.87 4.26
695 716 0.545171 CCATCACCAGAGCAGGATGT 59.455 55.000 0.00 0.00 39.31 3.06
805 839 2.258755 GTGTTCCGCAATGGCATAAAC 58.741 47.619 0.00 1.90 41.24 2.01
818 852 2.540101 GACAAGAGACAACTGTGTTCCG 59.460 50.000 0.00 0.00 38.41 4.30
1500 1534 5.465056 GCATATCAGCTCTAACTCTTCCAAC 59.535 44.000 0.00 0.00 0.00 3.77
1530 1564 7.133891 AGAGGAAAACTTGATGATGTTAACG 57.866 36.000 0.26 0.00 0.00 3.18
1809 1843 2.553172 GTGACGGACAGTTAGAGACAGT 59.447 50.000 0.00 0.00 0.00 3.55
2068 2102 7.174946 GGAAAATGGAGAACTCACATCTGTAAA 59.825 37.037 4.23 0.00 0.00 2.01
2088 2122 6.834168 AAACAATGGTCTACATCGGAAAAT 57.166 33.333 0.00 0.00 39.40 1.82
2258 2293 2.375174 ACCTAGTGGGCAGTTGATTTCA 59.625 45.455 0.00 0.00 39.10 2.69
2385 2420 5.043737 AGTTGGGCTGTAGAAAACTTACA 57.956 39.130 0.00 0.00 0.00 2.41
2480 2515 4.515191 TGAAAATCCAGTGTCAGCTACAAC 59.485 41.667 0.00 0.00 40.63 3.32
2709 2828 5.813717 TGTCTACATGATAACCGAGTTACG 58.186 41.667 0.00 0.00 42.18 3.18
2734 2853 3.549019 CCTCGTCAGGAATCGATGTGTAG 60.549 52.174 0.00 0.00 43.65 2.74
2844 2964 5.693769 AAGCAACTAATACTAAGAGCCCA 57.306 39.130 0.00 0.00 0.00 5.36
2985 3108 5.914033 TGTTCAATAGGTGTATCAGTAGGC 58.086 41.667 0.00 0.00 0.00 3.93
2997 3120 7.653311 GCTTTTTCAATCTGTTGTTCAATAGGT 59.347 33.333 8.87 0.20 36.69 3.08
3189 3317 7.201461 CGAACATGGTTGAAATGATTCCAATTC 60.201 37.037 0.00 0.00 34.49 2.17
3312 3447 3.370978 GGTTGTCGACACATGTCTTATGG 59.629 47.826 19.90 0.00 42.66 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.