Multiple sequence alignment - TraesCS7B01G204300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G204300 chr7B 100.000 7051 0 0 1 7051 374567024 374559974 0.000000e+00 13021.0
1 TraesCS7B01G204300 chr7B 100.000 31 0 0 6797 6827 259789028 259789058 2.750000e-04 58.4
2 TraesCS7B01G204300 chr7A 89.510 2326 130 51 978 3230 427619633 427617349 0.000000e+00 2839.0
3 TraesCS7B01G204300 chr7A 91.555 1267 66 17 5376 6605 427615991 427614729 0.000000e+00 1709.0
4 TraesCS7B01G204300 chr7A 88.092 781 58 18 4387 5144 427617199 427616431 0.000000e+00 894.0
5 TraesCS7B01G204300 chr7A 91.707 615 38 5 157 770 427620440 427619838 0.000000e+00 841.0
6 TraesCS7B01G204300 chr7A 96.552 232 8 0 5138 5369 427616259 427616028 1.110000e-102 385.0
7 TraesCS7B01G204300 chr7A 81.042 480 79 9 3633 4109 135624753 135625223 8.640000e-99 372.0
8 TraesCS7B01G204300 chr7A 85.465 172 12 6 4204 4369 427617348 427617184 4.370000e-37 167.0
9 TraesCS7B01G204300 chr7A 96.629 89 3 0 6963 7051 427613478 427613390 1.580000e-31 148.0
10 TraesCS7B01G204300 chr7D 88.851 1471 84 26 1812 3230 379315770 379314328 0.000000e+00 1735.0
11 TraesCS7B01G204300 chr7D 91.612 1061 60 15 5376 6424 379313138 379312095 0.000000e+00 1439.0
12 TraesCS7B01G204300 chr7D 91.741 1005 61 14 4387 5377 379314167 379313171 0.000000e+00 1376.0
13 TraesCS7B01G204300 chr7D 91.035 792 36 15 978 1746 379316548 379315769 0.000000e+00 1037.0
14 TraesCS7B01G204300 chr7D 89.076 714 38 12 70 770 379317438 379316752 0.000000e+00 850.0
15 TraesCS7B01G204300 chr7D 97.551 245 5 1 6361 6605 379312032 379311789 1.090000e-112 418.0
16 TraesCS7B01G204300 chr7D 79.526 591 95 14 3630 4203 476006582 476006001 1.430000e-106 398.0
17 TraesCS7B01G204300 chr7D 90.395 177 5 4 4204 4369 379314327 379314152 9.210000e-54 222.0
18 TraesCS7B01G204300 chr7D 95.455 88 4 0 6964 7051 379289344 379289257 2.650000e-29 141.0
19 TraesCS7B01G204300 chr7D 79.167 216 34 8 3278 3490 224450104 224449897 9.540000e-29 139.0
20 TraesCS7B01G204300 chr7D 98.438 64 1 0 6361 6424 379312095 379312032 5.780000e-21 113.0
21 TraesCS7B01G204300 chr7D 98.039 51 1 0 6603 6653 379311763 379311713 9.740000e-14 89.8
22 TraesCS7B01G204300 chr5A 80.862 580 86 19 3642 4206 520241564 520242133 3.910000e-117 433.0
23 TraesCS7B01G204300 chr5A 82.005 389 46 13 3226 3592 520240974 520241360 6.870000e-80 309.0
24 TraesCS7B01G204300 chr5A 87.500 112 9 4 4017 4125 635908196 635908087 2.670000e-24 124.0
25 TraesCS7B01G204300 chr5B 79.436 603 98 14 3621 4206 491113870 491114463 3.060000e-108 403.0
26 TraesCS7B01G204300 chr5B 89.202 213 23 0 3278 3490 516122893 516122681 4.190000e-67 267.0
27 TraesCS7B01G204300 chr2D 83.111 450 66 8 3620 4067 80624649 80624208 1.100000e-107 401.0
28 TraesCS7B01G204300 chr2D 88.889 162 17 1 3302 3462 605383481 605383642 1.550000e-46 198.0
29 TraesCS7B01G204300 chr2D 92.000 100 8 0 3494 3593 630133682 630133781 2.650000e-29 141.0
30 TraesCS7B01G204300 chr2D 100.000 29 0 0 6722 6750 78576610 78576582 4.000000e-03 54.7
31 TraesCS7B01G204300 chrUn 80.688 523 84 13 3596 4107 92502844 92503360 2.380000e-104 390.0
32 TraesCS7B01G204300 chr2B 79.316 585 89 14 3641 4198 132276524 132275945 1.440000e-101 381.0
33 TraesCS7B01G204300 chr2B 76.395 233 52 3 3974 4204 796555191 796555422 9.600000e-24 122.0
34 TraesCS7B01G204300 chr3A 79.019 591 88 24 3640 4205 593174423 593173844 8.640000e-99 372.0
35 TraesCS7B01G204300 chr3A 78.378 333 54 9 3284 3598 631346171 631346503 4.310000e-47 200.0
36 TraesCS7B01G204300 chr3A 85.938 64 9 0 6656 6719 502098022 502097959 1.270000e-07 69.4
37 TraesCS7B01G204300 chr3A 77.119 118 15 5 6726 6842 663189155 663189049 2.750000e-04 58.4
38 TraesCS7B01G204300 chr4D 81.416 452 76 7 3641 4088 471813043 471812596 5.200000e-96 363.0
39 TraesCS7B01G204300 chr3D 82.574 373 55 8 3227 3593 124654745 124655113 3.170000e-83 320.0
40 TraesCS7B01G204300 chr3D 81.646 316 45 8 3296 3598 108239892 108239577 4.220000e-62 250.0
41 TraesCS7B01G204300 chr3D 85.938 64 9 0 6656 6719 378024992 378024929 1.270000e-07 69.4
42 TraesCS7B01G204300 chr3B 81.347 386 57 8 3228 3598 159504518 159504133 4.130000e-77 300.0
43 TraesCS7B01G204300 chr3B 84.615 65 9 1 6656 6719 492568197 492568133 5.900000e-06 63.9
44 TraesCS7B01G204300 chr5D 80.665 331 41 9 3276 3593 402732378 402732058 1.180000e-57 235.0
45 TraesCS7B01G204300 chr5D 78.716 296 43 13 3322 3598 333989038 333989332 5.620000e-41 180.0
46 TraesCS7B01G204300 chr5D 84.358 179 26 2 3420 3598 361602774 361602950 2.610000e-39 174.0
47 TraesCS7B01G204300 chr4B 75.949 316 52 18 3290 3593 172766735 172766432 2.650000e-29 141.0
48 TraesCS7B01G204300 chr4B 93.478 46 2 1 6797 6842 69613177 69613221 4.560000e-07 67.6
49 TraesCS7B01G204300 chr4B 91.304 46 4 0 6797 6842 427914285 427914240 5.900000e-06 63.9
50 TraesCS7B01G204300 chr1D 78.378 222 34 9 3985 4205 444896175 444896383 1.600000e-26 132.0
51 TraesCS7B01G204300 chr1D 78.916 166 24 9 3435 3590 417975593 417975757 1.250000e-17 102.0
52 TraesCS7B01G204300 chr1D 78.873 142 28 2 4064 4205 258377157 258377018 2.090000e-15 95.3
53 TraesCS7B01G204300 chr2A 85.981 107 14 1 3486 3591 70044483 70044377 5.780000e-21 113.0
54 TraesCS7B01G204300 chr2A 86.364 88 12 0 3486 3573 694971642 694971555 5.820000e-16 97.1
55 TraesCS7B01G204300 chr2A 81.905 105 6 7 4061 4153 52153047 52153150 7.580000e-10 76.8
56 TraesCS7B01G204300 chr6B 85.294 102 14 1 6725 6826 681025987 681025887 3.480000e-18 104.0
57 TraesCS7B01G204300 chr1A 89.362 47 4 1 6804 6850 451286146 451286191 2.750000e-04 58.4
58 TraesCS7B01G204300 chr1B 91.892 37 3 0 6725 6761 69197031 69196995 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G204300 chr7B 374559974 374567024 7050 True 13021.000000 13021 100.000000 1 7051 1 chr7B.!!$R1 7050
1 TraesCS7B01G204300 chr7A 427613390 427620440 7050 True 997.571429 2839 91.358571 157 7051 7 chr7A.!!$R1 6894
2 TraesCS7B01G204300 chr7D 379311713 379317438 5725 True 808.866667 1735 92.970889 70 6653 9 chr7D.!!$R4 6583
3 TraesCS7B01G204300 chr7D 476006001 476006582 581 True 398.000000 398 79.526000 3630 4203 1 chr7D.!!$R3 573
4 TraesCS7B01G204300 chr5A 520240974 520242133 1159 False 371.000000 433 81.433500 3226 4206 2 chr5A.!!$F1 980
5 TraesCS7B01G204300 chr5B 491113870 491114463 593 False 403.000000 403 79.436000 3621 4206 1 chr5B.!!$F1 585
6 TraesCS7B01G204300 chrUn 92502844 92503360 516 False 390.000000 390 80.688000 3596 4107 1 chrUn.!!$F1 511
7 TraesCS7B01G204300 chr2B 132275945 132276524 579 True 381.000000 381 79.316000 3641 4198 1 chr2B.!!$R1 557
8 TraesCS7B01G204300 chr3A 593173844 593174423 579 True 372.000000 372 79.019000 3640 4205 1 chr3A.!!$R2 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 855 1.032794 TGCACCGCAAACATAAACCA 58.967 45.0 0.00 0.00 34.76 3.67 F
1804 1886 0.036022 GCTGCCTCCTGTCCCATATC 59.964 60.0 0.00 0.00 0.00 1.63 F
2506 2626 0.401356 TGAGCATTCAGTCAGGGCAA 59.599 50.0 0.00 0.00 0.00 4.52 F
3656 3968 0.033011 CTTCCTCCTCCTTCTCCGGA 60.033 60.0 2.93 2.93 0.00 5.14 F
4089 4428 0.475906 GCTGGATATGAGGGGTGCTT 59.524 55.0 0.00 0.00 0.00 3.91 F
5630 6242 1.035932 AGCAGCCAGGCATTGATGTC 61.036 55.0 15.80 0.00 35.83 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2576 2707 0.037734 CCTCCAAACCCTGTACACCC 59.962 60.0 0.00 0.00 0.00 4.61 R
3246 3383 0.171231 GAAGCCCGAATTTGCTGTCC 59.829 55.0 0.00 0.00 38.00 4.02 R
3971 4287 0.108019 GGAAACCCAACAGTCCGACT 59.892 55.0 0.00 0.00 0.00 4.18 R
5021 5399 0.176680 TCTCAGGATTCGAGCAAGCC 59.823 55.0 0.00 0.00 41.39 4.35 R
5969 6594 0.393077 AACTTGTAGCTGCAGACCGT 59.607 50.0 20.43 4.92 0.00 4.83 R
6892 8623 0.179100 TCAGTCGCTTGCTCTATGCC 60.179 55.0 0.00 0.00 42.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.824341 AGTCGACCTACCTAAACAGGTG 59.176 50.000 13.01 0.00 45.32 4.00
22 23 2.560105 GTCGACCTACCTAAACAGGTGT 59.440 50.000 3.51 0.00 45.32 4.16
23 24 3.006217 GTCGACCTACCTAAACAGGTGTT 59.994 47.826 3.51 0.00 45.32 3.32
24 25 3.006110 TCGACCTACCTAAACAGGTGTTG 59.994 47.826 6.59 1.65 45.32 3.33
25 26 3.072211 GACCTACCTAAACAGGTGTTGC 58.928 50.000 6.59 0.00 45.32 4.17
26 27 2.224695 ACCTACCTAAACAGGTGTTGCC 60.225 50.000 6.59 0.00 43.64 4.52
27 28 2.224670 CCTACCTAAACAGGTGTTGCCA 60.225 50.000 6.59 0.00 43.03 4.92
28 29 2.675658 ACCTAAACAGGTGTTGCCAT 57.324 45.000 0.00 0.00 41.33 4.40
29 30 2.514803 ACCTAAACAGGTGTTGCCATC 58.485 47.619 0.00 0.00 41.33 3.51
30 31 2.108250 ACCTAAACAGGTGTTGCCATCT 59.892 45.455 0.00 0.00 41.33 2.90
31 32 3.329520 ACCTAAACAGGTGTTGCCATCTA 59.670 43.478 0.00 0.00 41.33 1.98
32 33 4.018415 ACCTAAACAGGTGTTGCCATCTAT 60.018 41.667 0.00 0.00 41.33 1.98
33 34 4.336433 CCTAAACAGGTGTTGCCATCTATG 59.664 45.833 0.00 0.00 38.44 2.23
34 35 1.755179 ACAGGTGTTGCCATCTATGC 58.245 50.000 0.00 0.00 40.61 3.14
35 36 1.283029 ACAGGTGTTGCCATCTATGCT 59.717 47.619 0.00 0.00 40.61 3.79
36 37 2.505407 ACAGGTGTTGCCATCTATGCTA 59.495 45.455 0.00 0.00 40.61 3.49
37 38 3.137176 ACAGGTGTTGCCATCTATGCTAT 59.863 43.478 0.00 0.00 40.61 2.97
38 39 4.347876 ACAGGTGTTGCCATCTATGCTATA 59.652 41.667 0.00 0.00 40.61 1.31
39 40 5.013495 ACAGGTGTTGCCATCTATGCTATAT 59.987 40.000 0.00 0.00 40.61 0.86
40 41 6.213397 ACAGGTGTTGCCATCTATGCTATATA 59.787 38.462 0.00 0.00 40.61 0.86
41 42 6.760298 CAGGTGTTGCCATCTATGCTATATAG 59.240 42.308 5.30 5.30 40.61 1.31
42 43 6.669591 AGGTGTTGCCATCTATGCTATATAGA 59.330 38.462 14.16 0.00 40.61 1.98
43 44 7.180946 AGGTGTTGCCATCTATGCTATATAGAA 59.819 37.037 14.16 2.95 40.61 2.10
44 45 7.493971 GGTGTTGCCATCTATGCTATATAGAAG 59.506 40.741 14.16 7.28 34.67 2.85
45 46 8.253810 GTGTTGCCATCTATGCTATATAGAAGA 58.746 37.037 14.16 11.97 34.67 2.87
46 47 8.815912 TGTTGCCATCTATGCTATATAGAAGAA 58.184 33.333 14.16 0.00 34.67 2.52
47 48 9.658799 GTTGCCATCTATGCTATATAGAAGAAA 57.341 33.333 14.16 2.15 34.67 2.52
83 84 3.319755 CAAACATGTTTGCCCAGATCAC 58.680 45.455 32.10 0.00 42.66 3.06
100 101 3.070476 TCACGTTTATAACCCCAACCC 57.930 47.619 0.00 0.00 0.00 4.11
123 124 1.176527 CGTTTGGGCCTGAACATGAT 58.823 50.000 18.75 0.00 0.00 2.45
138 139 5.127519 TGAACATGATTTTGCCCTAATGGAG 59.872 40.000 0.00 0.00 35.39 3.86
150 151 3.826157 CCCTAATGGAGTGAACAAAAGCA 59.174 43.478 0.00 0.00 35.39 3.91
177 178 2.799978 CTGCAAAAACCGAACAAATCCC 59.200 45.455 0.00 0.00 0.00 3.85
178 179 1.790043 GCAAAAACCGAACAAATCCCG 59.210 47.619 0.00 0.00 0.00 5.14
377 379 2.129607 TCTTTTTCTTCCGACCGTTCG 58.870 47.619 0.00 0.00 45.44 3.95
421 423 4.201679 CATCCCGCGCGGTGAGTA 62.202 66.667 43.12 24.74 0.00 2.59
432 434 1.982660 CGGTGAGTATCCTCTAGCCA 58.017 55.000 0.00 0.00 38.61 4.75
483 485 1.163554 CCTTCACTTTGCTCTCTGCC 58.836 55.000 0.00 0.00 42.00 4.85
502 504 2.498167 CCACCGATCTCATCCAAATCC 58.502 52.381 0.00 0.00 0.00 3.01
503 505 2.158769 CCACCGATCTCATCCAAATCCA 60.159 50.000 0.00 0.00 0.00 3.41
506 508 2.498167 CGATCTCATCCAAATCCACCC 58.502 52.381 0.00 0.00 0.00 4.61
509 511 2.287584 TCTCATCCAAATCCACCCCTT 58.712 47.619 0.00 0.00 0.00 3.95
515 526 1.359130 CCAAATCCACCCCTTCTTCCT 59.641 52.381 0.00 0.00 0.00 3.36
598 609 3.694072 TCCATAATTTTGGGTCTTCAGCG 59.306 43.478 14.11 0.00 37.37 5.18
633 644 1.183549 CCCACGTTAGCTAGGTCTGT 58.816 55.000 0.00 0.00 0.00 3.41
677 688 6.996282 GGGAATGTCTTTTATTCTCCCGAATA 59.004 38.462 0.00 0.00 40.28 1.75
698 709 7.527196 CGAATATTGGGAGTACATATGAACCCT 60.527 40.741 10.38 0.00 38.28 4.34
734 748 2.191400 AGATTGCTAGGCTGGAACTGA 58.809 47.619 0.43 0.00 0.00 3.41
747 761 4.521146 CTGGAACTGATATTGCTGAACCT 58.479 43.478 0.00 0.00 0.00 3.50
754 768 5.945784 ACTGATATTGCTGAACCTGCTTTTA 59.054 36.000 0.00 0.00 0.00 1.52
755 769 6.094603 ACTGATATTGCTGAACCTGCTTTTAG 59.905 38.462 0.00 0.00 0.00 1.85
756 770 6.179756 TGATATTGCTGAACCTGCTTTTAGA 58.820 36.000 0.00 0.00 0.00 2.10
757 771 6.830324 TGATATTGCTGAACCTGCTTTTAGAT 59.170 34.615 0.00 0.00 0.00 1.98
758 772 7.992608 TGATATTGCTGAACCTGCTTTTAGATA 59.007 33.333 0.00 0.00 0.00 1.98
759 773 8.930846 ATATTGCTGAACCTGCTTTTAGATAT 57.069 30.769 0.00 0.00 0.00 1.63
760 774 6.683974 TTGCTGAACCTGCTTTTAGATATC 57.316 37.500 0.00 0.00 0.00 1.63
761 775 5.994250 TGCTGAACCTGCTTTTAGATATCT 58.006 37.500 10.73 10.73 0.00 1.98
762 776 5.819379 TGCTGAACCTGCTTTTAGATATCTG 59.181 40.000 15.79 0.00 0.00 2.90
763 777 6.051717 GCTGAACCTGCTTTTAGATATCTGA 58.948 40.000 15.79 4.04 0.00 3.27
764 778 6.202570 GCTGAACCTGCTTTTAGATATCTGAG 59.797 42.308 15.79 11.01 0.00 3.35
765 779 7.187824 TGAACCTGCTTTTAGATATCTGAGT 57.812 36.000 15.79 0.00 0.00 3.41
766 780 7.268586 TGAACCTGCTTTTAGATATCTGAGTC 58.731 38.462 15.79 7.48 0.00 3.36
767 781 7.124901 TGAACCTGCTTTTAGATATCTGAGTCT 59.875 37.037 15.79 1.70 0.00 3.24
768 782 7.430760 ACCTGCTTTTAGATATCTGAGTCTT 57.569 36.000 15.79 0.00 0.00 3.01
769 783 7.856415 ACCTGCTTTTAGATATCTGAGTCTTT 58.144 34.615 15.79 0.00 0.00 2.52
770 784 8.325046 ACCTGCTTTTAGATATCTGAGTCTTTT 58.675 33.333 15.79 0.00 0.00 2.27
771 785 9.171877 CCTGCTTTTAGATATCTGAGTCTTTTT 57.828 33.333 15.79 0.00 0.00 1.94
773 787 9.950496 TGCTTTTAGATATCTGAGTCTTTTTCT 57.050 29.630 15.79 0.00 0.00 2.52
776 790 8.635877 TTTAGATATCTGAGTCTTTTTCTCGC 57.364 34.615 15.79 0.00 34.99 5.03
777 791 6.214191 AGATATCTGAGTCTTTTTCTCGCA 57.786 37.500 3.89 0.00 34.99 5.10
778 792 6.634805 AGATATCTGAGTCTTTTTCTCGCAA 58.365 36.000 3.89 0.00 34.99 4.85
779 793 7.099764 AGATATCTGAGTCTTTTTCTCGCAAA 58.900 34.615 3.89 0.00 34.99 3.68
780 794 7.604164 AGATATCTGAGTCTTTTTCTCGCAAAA 59.396 33.333 3.89 0.00 34.99 2.44
781 795 5.811399 TCTGAGTCTTTTTCTCGCAAAAA 57.189 34.783 5.17 5.17 34.99 1.94
827 841 2.549926 CCACCTTTCTTTTGTTGCACC 58.450 47.619 0.00 0.00 0.00 5.01
828 842 2.192624 CACCTTTCTTTTGTTGCACCG 58.807 47.619 0.00 0.00 0.00 4.94
840 854 2.141535 TTGCACCGCAAACATAAACC 57.858 45.000 0.00 0.00 45.96 3.27
841 855 1.032794 TGCACCGCAAACATAAACCA 58.967 45.000 0.00 0.00 34.76 3.67
845 859 2.034053 CACCGCAAACATAAACCACAGT 59.966 45.455 0.00 0.00 0.00 3.55
860 874 5.270893 ACCACAGTTTTATTTTCCACACC 57.729 39.130 0.00 0.00 0.00 4.16
865 879 6.475402 CACAGTTTTATTTTCCACACCAGTTC 59.525 38.462 0.00 0.00 0.00 3.01
872 886 4.712122 TTTCCACACCAGTTCAAAAGAC 57.288 40.909 0.00 0.00 0.00 3.01
885 899 2.351418 TCAAAAGACGAGCACACAACTG 59.649 45.455 0.00 0.00 0.00 3.16
921 935 9.274065 CCAGTTAAGCGAAACAATTAATAACTC 57.726 33.333 6.93 0.00 31.86 3.01
934 948 8.832735 ACAATTAATAACTCTCCTAACAAGGGA 58.167 33.333 0.00 0.00 0.00 4.20
943 957 2.168521 TCCTAACAAGGGAGCAGATTCG 59.831 50.000 0.00 0.00 0.00 3.34
975 990 5.848286 TGTCAGAATGGGCAGGATAATAT 57.152 39.130 0.00 0.00 36.16 1.28
976 991 5.809001 TGTCAGAATGGGCAGGATAATATC 58.191 41.667 0.00 0.00 36.16 1.63
977 992 5.549228 TGTCAGAATGGGCAGGATAATATCT 59.451 40.000 0.00 0.00 36.16 1.98
978 993 6.044754 TGTCAGAATGGGCAGGATAATATCTT 59.955 38.462 0.00 0.00 36.16 2.40
981 996 6.822676 CAGAATGGGCAGGATAATATCTTCTC 59.177 42.308 0.00 0.00 0.00 2.87
1059 1105 0.725686 CTGCGAGGCTTGATGTTGAG 59.274 55.000 5.76 0.00 0.00 3.02
1205 1252 6.455360 AGCTTTCAGTCTTGATGTTTTTCA 57.545 33.333 0.00 0.00 32.27 2.69
1236 1283 5.105310 TCAGCCAGGACTCTTATTTCAGTAC 60.105 44.000 0.00 0.00 0.00 2.73
1260 1307 1.272781 CTGAACTCGATGCGTTCCTC 58.727 55.000 12.03 0.00 39.92 3.71
1416 1463 1.668751 TCAACTGTTGTCCGCTTTGTC 59.331 47.619 19.12 0.00 0.00 3.18
1442 1489 9.853555 CTATGATATGTTTTTGTGCCTTTGTTA 57.146 29.630 0.00 0.00 0.00 2.41
1474 1521 7.797038 TCGTGCTGATTAGAGTAGTAACATA 57.203 36.000 0.00 0.00 0.00 2.29
1495 1542 9.545105 AACATAAATTTGAATTGCTCTCAACAA 57.455 25.926 0.00 0.00 34.60 2.83
1496 1543 9.199982 ACATAAATTTGAATTGCTCTCAACAAG 57.800 29.630 0.00 0.00 34.60 3.16
1532 1579 4.273480 AGATTGTTGTCAAGTGTGTACAGC 59.727 41.667 0.00 0.00 36.97 4.40
1533 1580 3.260475 TGTTGTCAAGTGTGTACAGCT 57.740 42.857 0.00 0.00 0.00 4.24
1536 1583 3.260475 TGTCAAGTGTGTACAGCTTGT 57.740 42.857 26.27 3.85 36.86 3.16
1537 1584 4.394439 TGTCAAGTGTGTACAGCTTGTA 57.606 40.909 26.27 18.74 36.86 2.41
1538 1585 4.760878 TGTCAAGTGTGTACAGCTTGTAA 58.239 39.130 26.27 18.20 34.21 2.41
1539 1586 4.808895 TGTCAAGTGTGTACAGCTTGTAAG 59.191 41.667 26.27 11.61 34.21 2.34
1540 1587 4.809426 GTCAAGTGTGTACAGCTTGTAAGT 59.191 41.667 26.27 2.19 34.21 2.24
1541 1588 5.981315 GTCAAGTGTGTACAGCTTGTAAGTA 59.019 40.000 26.27 13.27 34.21 2.24
1629 1706 4.738998 TGGGTTGGGCCAGCATCG 62.739 66.667 22.38 0.00 39.65 3.84
1664 1742 1.812922 CTGCAGCTAACTCAGGGCG 60.813 63.158 0.00 0.00 0.00 6.13
1723 1801 6.817765 AAACACAACGAAACATCCTATGAT 57.182 33.333 0.00 0.00 0.00 2.45
1724 1802 6.817765 AACACAACGAAACATCCTATGATT 57.182 33.333 0.00 0.00 0.00 2.57
1753 1831 9.802039 ACCTACAAAAATTCTCATTACCAGTAA 57.198 29.630 0.00 0.00 0.00 2.24
1785 1867 3.540617 TGTGATGTACCAAATCCCATCG 58.459 45.455 0.00 0.00 37.18 3.84
1788 1870 2.036958 TGTACCAAATCCCATCGCTG 57.963 50.000 0.00 0.00 0.00 5.18
1797 1879 2.202987 CCATCGCTGCCTCCTGTC 60.203 66.667 0.00 0.00 0.00 3.51
1804 1886 0.036022 GCTGCCTCCTGTCCCATATC 59.964 60.000 0.00 0.00 0.00 1.63
1824 1906 1.545582 CATGTCCTTTGGGCGAACAAT 59.454 47.619 0.00 0.00 0.00 2.71
1849 1931 3.499537 ACAGTGTGCAGATACATGTTGTG 59.500 43.478 2.30 2.27 32.43 3.33
1877 1959 7.112779 ACACTTTCTATGTATCCTTTTCCCAG 58.887 38.462 0.00 0.00 0.00 4.45
1938 2021 5.016051 TGAAGTGACCTCAGATATGAAGC 57.984 43.478 0.00 0.00 0.00 3.86
1979 2062 7.116090 CCGAGAATCATTAAGCTCAGACATAAG 59.884 40.741 0.00 0.00 33.17 1.73
2040 2124 8.816640 AATATGTTGTTGAAAATCCTGTTGTC 57.183 30.769 0.00 0.00 0.00 3.18
2042 2126 5.649557 TGTTGTTGAAAATCCTGTTGTCAG 58.350 37.500 0.00 0.00 41.01 3.51
2061 2145 7.459795 TGTCAGTGGCATATTAATGTTTTGA 57.540 32.000 0.00 0.00 35.38 2.69
2098 2182 8.877864 ACTATATTTCAACCAAATCAACCTGA 57.122 30.769 0.00 0.00 36.09 3.86
2133 2234 5.353394 TGTTTATACCCAACTAGCTCAGG 57.647 43.478 0.00 0.00 0.00 3.86
2141 2242 4.254492 CCCAACTAGCTCAGGAAGTTTAC 58.746 47.826 0.00 0.00 31.21 2.01
2155 2256 8.938906 TCAGGAAGTTTACGTTATTAATTCACC 58.061 33.333 0.00 0.00 0.00 4.02
2263 2372 2.485302 GCACCTGGTTGCCTTCATTTTT 60.485 45.455 0.00 0.00 36.42 1.94
2280 2389 1.698506 TTTGGGTTTGGCATCGAGTT 58.301 45.000 0.00 0.00 0.00 3.01
2285 2394 1.610624 GGTTTGGCATCGAGTTCCAGA 60.611 52.381 0.00 0.00 0.00 3.86
2317 2436 5.128499 CCAGTGATACAACTTCCTCATCTCT 59.872 44.000 0.00 0.00 0.00 3.10
2318 2437 6.041511 CAGTGATACAACTTCCTCATCTCTG 58.958 44.000 0.00 0.00 33.51 3.35
2330 2449 2.415857 CTCATCTCTGCTGAGCACAAAC 59.584 50.000 15.31 0.00 40.03 2.93
2383 2502 5.916883 CGATCAGTTGAACAAAGAAGCAATT 59.083 36.000 0.00 0.00 0.00 2.32
2413 2533 2.901338 AAAAGTTTAGGAGGGAGGGC 57.099 50.000 0.00 0.00 0.00 5.19
2456 2576 1.003718 GACAACCCCTTCCTGGACG 60.004 63.158 0.00 0.00 38.35 4.79
2463 2583 1.599047 CCTTCCTGGACGATGCAGT 59.401 57.895 1.08 0.00 33.66 4.40
2506 2626 0.401356 TGAGCATTCAGTCAGGGCAA 59.599 50.000 0.00 0.00 0.00 4.52
2566 2697 2.159043 GCTAGCTGTGGCAGATTGTCTA 60.159 50.000 7.70 0.00 41.70 2.59
2569 2700 2.502947 AGCTGTGGCAGATTGTCTATGA 59.497 45.455 0.00 0.00 41.70 2.15
2576 2707 3.144506 GCAGATTGTCTATGACATGGGG 58.855 50.000 0.00 0.00 42.40 4.96
2601 2732 0.842467 ACAGGGTTTGGAGGGGAGAG 60.842 60.000 0.00 0.00 0.00 3.20
2611 2742 3.173965 TGGAGGGGAGAGTTAGTTGAAG 58.826 50.000 0.00 0.00 0.00 3.02
2633 2765 3.839979 TCCCTGGTTTGGACTTTGG 57.160 52.632 0.00 0.00 0.00 3.28
2679 2813 3.014623 GGGGATTAAGGACGGAAAGTTG 58.985 50.000 0.00 0.00 0.00 3.16
2734 2868 7.373493 ACATTGAAGCAGGTTAAAGAATCAAG 58.627 34.615 0.00 0.00 0.00 3.02
2738 2872 6.147164 TGAAGCAGGTTAAAGAATCAAGTACG 59.853 38.462 0.00 0.00 0.00 3.67
2821 2957 7.012232 TCCCTTTGTTAACTGTTAACGGTTTAG 59.988 37.037 31.94 20.96 46.53 1.85
2830 2966 6.461640 ACTGTTAACGGTTTAGCTACTTGAT 58.538 36.000 14.50 0.00 29.59 2.57
2871 3007 5.945191 TGAGCAATAACTGATGAATTCCACA 59.055 36.000 2.27 2.45 0.00 4.17
2872 3008 6.127925 TGAGCAATAACTGATGAATTCCACAC 60.128 38.462 2.27 0.00 0.00 3.82
2965 3101 3.190535 CACTGTTGGTGGCCAATACTTAC 59.809 47.826 7.24 4.78 45.80 2.34
3024 3160 3.009143 GGGGTGATTCTGAACAGGTTACT 59.991 47.826 1.93 0.00 0.00 2.24
3029 3165 6.363473 GTGATTCTGAACAGGTTACTTTTCG 58.637 40.000 1.93 0.00 36.43 3.46
3037 3173 9.166126 CTGAACAGGTTACTTTTCGAAAATTAC 57.834 33.333 22.73 18.54 36.43 1.89
3040 3176 9.511144 AACAGGTTACTTTTCGAAAATTACTTG 57.489 29.630 22.73 23.67 0.00 3.16
3083 3220 7.817418 TTTATCATGCTAATAACCCCTGTTC 57.183 36.000 0.00 0.00 35.87 3.18
3091 3228 5.758784 GCTAATAACCCCTGTTCTGTATCAC 59.241 44.000 0.00 0.00 35.87 3.06
3132 3269 3.831727 TTGGGGCTTGGTGCAGCAT 62.832 57.895 20.91 0.00 45.15 3.79
3263 3400 2.040544 CGGACAGCAAATTCGGGCT 61.041 57.895 0.00 0.00 42.06 5.19
3264 3401 1.586154 CGGACAGCAAATTCGGGCTT 61.586 55.000 0.00 0.00 38.56 4.35
3265 3402 0.171231 GGACAGCAAATTCGGGCTTC 59.829 55.000 0.00 0.00 38.56 3.86
3266 3403 0.881118 GACAGCAAATTCGGGCTTCA 59.119 50.000 0.00 0.00 38.56 3.02
3269 3406 2.061028 CAGCAAATTCGGGCTTCAAAC 58.939 47.619 0.00 0.00 38.56 2.93
3270 3407 1.059942 GCAAATTCGGGCTTCAAACG 58.940 50.000 0.00 0.00 0.00 3.60
3271 3408 1.059942 CAAATTCGGGCTTCAAACGC 58.940 50.000 0.00 0.00 0.00 4.84
3273 3410 0.893727 AATTCGGGCTTCAAACGCCT 60.894 50.000 0.71 0.00 46.73 5.52
3274 3411 0.035820 ATTCGGGCTTCAAACGCCTA 60.036 50.000 0.71 0.00 46.73 3.93
3315 3463 2.369203 TGACCGGTCACACCTCAAATTA 59.631 45.455 33.23 5.69 35.66 1.40
3316 3464 3.000727 GACCGGTCACACCTCAAATTAG 58.999 50.000 29.75 0.00 35.66 1.73
3318 3466 2.422597 CGGTCACACCTCAAATTAGCA 58.577 47.619 0.00 0.00 35.66 3.49
3319 3467 2.159627 CGGTCACACCTCAAATTAGCAC 59.840 50.000 0.00 0.00 35.66 4.40
3320 3468 3.412386 GGTCACACCTCAAATTAGCACT 58.588 45.455 0.00 0.00 34.73 4.40
3321 3469 3.821033 GGTCACACCTCAAATTAGCACTT 59.179 43.478 0.00 0.00 34.73 3.16
3325 3473 4.074970 ACACCTCAAATTAGCACTTCTGG 58.925 43.478 0.00 0.00 0.00 3.86
3329 3477 4.578105 CCTCAAATTAGCACTTCTGGATCC 59.422 45.833 4.20 4.20 0.00 3.36
3330 3478 5.178096 TCAAATTAGCACTTCTGGATCCA 57.822 39.130 15.27 15.27 0.00 3.41
3345 3493 5.306419 TCTGGATCCAGATACCTCATTCTTG 59.694 44.000 35.92 9.99 46.80 3.02
3379 3527 3.919804 CCATACAAAACATGCAAACGAGG 59.080 43.478 0.00 0.00 0.00 4.63
3385 3533 3.575965 AACATGCAAACGAGGAAATCC 57.424 42.857 0.00 0.00 0.00 3.01
3397 3545 4.042398 CGAGGAAATCCACGTACTATGTG 58.958 47.826 10.59 1.81 43.52 3.21
3409 3557 7.764695 CACGTACTATGTGGATCAAATAACA 57.235 36.000 0.00 0.00 31.65 2.41
3419 3567 9.959721 ATGTGGATCAAATAACATATACTACCC 57.040 33.333 0.00 0.00 31.63 3.69
3432 3580 1.978454 ACTACCCTAATCCTCGTCGG 58.022 55.000 0.00 0.00 0.00 4.79
3433 3581 1.245732 CTACCCTAATCCTCGTCGGG 58.754 60.000 0.00 0.00 40.79 5.14
3440 3588 1.735376 AATCCTCGTCGGGGATGTCG 61.735 60.000 27.21 0.00 42.15 4.35
3479 3627 4.875713 GGGTACATGGGCGGCAGG 62.876 72.222 12.47 1.23 0.00 4.85
3518 3675 3.760035 GCCTCCTTCTCCGCGTCA 61.760 66.667 4.92 0.00 0.00 4.35
3526 3683 3.479269 CTCCGCGTCAAGTTCGGC 61.479 66.667 4.92 0.00 42.65 5.54
3543 3700 3.399770 CGAAAAGCGCGTCGGTCA 61.400 61.111 19.23 0.00 36.27 4.02
3544 3701 2.170273 GAAAAGCGCGTCGGTCAC 59.830 61.111 8.43 0.00 36.27 3.67
3556 3713 2.032071 GGTCACCACCCGTTCCTG 59.968 66.667 0.00 0.00 36.54 3.86
3558 3715 2.847234 TCACCACCCGTTCCTGCT 60.847 61.111 0.00 0.00 0.00 4.24
3569 3726 0.807496 GTTCCTGCTGGATGAACTGC 59.193 55.000 13.72 0.00 42.81 4.40
3571 3728 2.110967 CCTGCTGGATGAACTGCCG 61.111 63.158 2.92 0.00 34.81 5.69
3613 3908 0.263172 TCCTCCTCTGGATCCTCCAC 59.737 60.000 14.23 0.00 42.67 4.02
3615 3910 0.264359 CTCCTCTGGATCCTCCACCT 59.736 60.000 14.23 0.00 42.67 4.00
3649 3960 2.892301 GCTCCTCTTCTTCCTCCTCCTT 60.892 54.545 0.00 0.00 0.00 3.36
3656 3968 0.033011 CTTCCTCCTCCTTCTCCGGA 60.033 60.000 2.93 2.93 0.00 5.14
3779 4091 1.901464 GGTCTTCTTTTGCCGGGCA 60.901 57.895 19.77 19.77 36.47 5.36
3801 4114 4.821589 CGGACGGCAGGGAAGAGC 62.822 72.222 0.00 0.00 0.00 4.09
3819 4132 3.462678 GGGGTGGAGACGGAGAGC 61.463 72.222 0.00 0.00 0.00 4.09
3822 4135 1.671742 GGTGGAGACGGAGAGCAAA 59.328 57.895 0.00 0.00 0.00 3.68
4066 4405 1.968540 GCCTGCGCCTTCCCATATC 60.969 63.158 4.18 0.00 0.00 1.63
4088 4427 1.422161 GGCTGGATATGAGGGGTGCT 61.422 60.000 0.00 0.00 0.00 4.40
4089 4428 0.475906 GCTGGATATGAGGGGTGCTT 59.524 55.000 0.00 0.00 0.00 3.91
4157 4512 1.296715 GTCATTGACCGGGCTGTCT 59.703 57.895 9.82 0.00 36.21 3.41
4285 4653 7.336931 AGTTTTAGTATTGTGAACATAGGCAGG 59.663 37.037 0.00 0.00 0.00 4.85
4308 4680 5.634020 GGCCACTAAGATTATACACGACATC 59.366 44.000 0.00 0.00 0.00 3.06
4340 4712 9.716531 CTTGAATGATCTGGAATAGCATACTTA 57.283 33.333 0.00 0.00 0.00 2.24
4365 4737 6.890979 AGAATTGGCTAGCCATTTAAGATC 57.109 37.500 36.24 23.77 46.64 2.75
4366 4738 6.608922 AGAATTGGCTAGCCATTTAAGATCT 58.391 36.000 36.24 25.37 46.64 2.75
4367 4739 7.065504 AGAATTGGCTAGCCATTTAAGATCTT 58.934 34.615 36.24 15.19 46.64 2.40
4368 4740 7.562821 AGAATTGGCTAGCCATTTAAGATCTTT 59.437 33.333 36.24 14.48 46.64 2.52
4369 4741 7.666063 ATTGGCTAGCCATTTAAGATCTTTT 57.334 32.000 36.24 2.65 46.64 2.27
4370 4742 7.480760 TTGGCTAGCCATTTAAGATCTTTTT 57.519 32.000 36.24 0.00 46.64 1.94
4641 5016 7.903145 TCTGACAAATAGCTGGTAACTAGAAA 58.097 34.615 0.00 0.00 37.61 2.52
4677 5052 8.829612 TGCAGTGATGTATAATGAATTACACAG 58.170 33.333 0.00 0.00 33.69 3.66
4934 5311 8.562892 GCATTCTGCATGTCTAATTAGTGTTAT 58.437 33.333 12.19 1.12 44.26 1.89
4973 5351 8.018520 CGGATGTATCACTTCTCTGTAAGTATC 58.981 40.741 0.00 0.00 37.61 2.24
5020 5398 6.543465 TCCATCCAACTTTATACAGATGCTTG 59.457 38.462 0.00 0.00 31.80 4.01
5021 5399 6.238842 CCATCCAACTTTATACAGATGCTTGG 60.239 42.308 0.00 0.00 31.80 3.61
5026 5404 4.641989 ACTTTATACAGATGCTTGGGCTTG 59.358 41.667 0.00 0.00 39.59 4.01
5043 5421 3.493350 GGCTTGCTCGAATCCTGAGATAA 60.493 47.826 0.00 0.00 35.43 1.75
5112 5507 3.004839 TGAATCCAGATGCTAGAGCGTAC 59.995 47.826 0.00 0.00 45.83 3.67
5136 5710 7.781056 ACAACTTCAAATGACTTGTTTGGTAT 58.219 30.769 0.00 0.00 37.22 2.73
5159 5733 3.070446 TCAGTAGGACGTTTCATGGTGTT 59.930 43.478 0.00 0.00 0.00 3.32
5229 5803 4.675063 TTTGCTTCTCCCCCTCTTAAAT 57.325 40.909 0.00 0.00 0.00 1.40
5265 5839 4.235372 AGAAGTTCCTCCTTCCTTTCTCA 58.765 43.478 0.00 0.00 41.45 3.27
5295 5869 3.777106 TCAGCAAGTTCTTCTGGTGAT 57.223 42.857 0.13 0.00 34.46 3.06
5388 5997 5.331876 ACTCTGCTCTTTGTGGTATAGTC 57.668 43.478 0.00 0.00 0.00 2.59
5493 6105 4.878397 GGGTCACACATAATCCTGAGAAAG 59.122 45.833 0.00 0.00 0.00 2.62
5536 6148 4.269183 CTGGTTGTAATGGACCTATGCAA 58.731 43.478 0.00 0.00 36.86 4.08
5630 6242 1.035932 AGCAGCCAGGCATTGATGTC 61.036 55.000 15.80 0.00 35.83 3.06
5712 6332 7.060421 TGTAAATCCTTCTTGTCTTGAGGTTT 58.940 34.615 0.00 0.00 0.00 3.27
5827 6450 6.244999 CGCAACGCACAAAATCTTATTAGTA 58.755 36.000 0.00 0.00 0.00 1.82
5879 6502 4.598022 TGTCACCTTGATCATTATGCCAA 58.402 39.130 0.00 0.00 0.00 4.52
5884 6507 6.608405 TCACCTTGATCATTATGCCAATCTTT 59.392 34.615 0.00 0.00 0.00 2.52
5888 6511 7.254658 CCTTGATCATTATGCCAATCTTTTTGC 60.255 37.037 0.00 0.00 0.00 3.68
5889 6512 6.880484 TGATCATTATGCCAATCTTTTTGCT 58.120 32.000 0.00 0.00 0.00 3.91
5897 6520 3.426525 GCCAATCTTTTTGCTTCTCAACG 59.573 43.478 0.00 0.00 33.73 4.10
5969 6594 7.988599 AGGTATTGTTATTATTGCCTACGAACA 59.011 33.333 0.00 0.00 0.00 3.18
6121 6747 1.946768 CAAGAACACTTCTTCGCCCAA 59.053 47.619 0.00 0.00 46.62 4.12
6635 7461 4.089923 GCAACTGTTAATGATTTTGACGCC 59.910 41.667 0.00 0.00 0.00 5.68
6659 7529 6.473455 CCGAGGATGACAATTTTAGAATTTGC 59.527 38.462 0.00 0.00 33.25 3.68
6660 7530 6.473455 CGAGGATGACAATTTTAGAATTTGCC 59.527 38.462 0.00 0.00 33.25 4.52
6661 7531 7.243604 AGGATGACAATTTTAGAATTTGCCA 57.756 32.000 0.00 0.00 33.25 4.92
6683 7553 5.388682 CCATGCTTGCAAACTTAAATTGTCG 60.389 40.000 0.00 0.00 0.00 4.35
6684 7554 4.047822 TGCTTGCAAACTTAAATTGTCGG 58.952 39.130 0.00 0.00 0.00 4.79
6690 7560 4.612033 GCAAACTTAAATTGTCGGTAGCGT 60.612 41.667 14.79 0.00 0.00 5.07
6692 7562 3.916761 ACTTAAATTGTCGGTAGCGTGA 58.083 40.909 14.79 1.97 0.00 4.35
6731 7601 3.703286 AAAACGTTTGCAAGTACTCCC 57.297 42.857 15.46 0.00 0.00 4.30
6733 7603 2.632987 ACGTTTGCAAGTACTCCCTT 57.367 45.000 0.00 0.00 0.00 3.95
6734 7604 2.490991 ACGTTTGCAAGTACTCCCTTC 58.509 47.619 0.00 0.00 0.00 3.46
6835 8566 5.361427 TGTGACAAGTAATTCTGGACGAAA 58.639 37.500 0.00 0.00 34.79 3.46
6856 8587 1.689575 GGAGTACCATCTCTCCCAGCA 60.690 57.143 0.00 0.00 42.96 4.41
6858 8589 2.501723 GAGTACCATCTCTCCCAGCAAA 59.498 50.000 0.00 0.00 0.00 3.68
6859 8590 2.237392 AGTACCATCTCTCCCAGCAAAC 59.763 50.000 0.00 0.00 0.00 2.93
6860 8591 0.036010 ACCATCTCTCCCAGCAAACG 60.036 55.000 0.00 0.00 0.00 3.60
6861 8592 0.036010 CCATCTCTCCCAGCAAACGT 60.036 55.000 0.00 0.00 0.00 3.99
6862 8593 1.363744 CATCTCTCCCAGCAAACGTC 58.636 55.000 0.00 0.00 0.00 4.34
6865 8596 0.868406 CTCTCCCAGCAAACGTCAAC 59.132 55.000 0.00 0.00 0.00 3.18
6866 8597 0.468226 TCTCCCAGCAAACGTCAACT 59.532 50.000 0.00 0.00 0.00 3.16
6867 8598 1.689813 TCTCCCAGCAAACGTCAACTA 59.310 47.619 0.00 0.00 0.00 2.24
6868 8599 2.103432 TCTCCCAGCAAACGTCAACTAA 59.897 45.455 0.00 0.00 0.00 2.24
6869 8600 2.875933 CTCCCAGCAAACGTCAACTAAA 59.124 45.455 0.00 0.00 0.00 1.85
6870 8601 3.482436 TCCCAGCAAACGTCAACTAAAT 58.518 40.909 0.00 0.00 0.00 1.40
6872 8603 4.693566 TCCCAGCAAACGTCAACTAAATAG 59.306 41.667 0.00 0.00 0.00 1.73
6873 8604 4.403453 CCAGCAAACGTCAACTAAATAGC 58.597 43.478 0.00 0.00 0.00 2.97
6875 8606 5.391950 CCAGCAAACGTCAACTAAATAGCAT 60.392 40.000 0.00 0.00 0.00 3.79
6876 8607 6.086222 CAGCAAACGTCAACTAAATAGCATT 58.914 36.000 0.00 0.00 0.00 3.56
6877 8608 7.240674 CAGCAAACGTCAACTAAATAGCATTA 58.759 34.615 0.00 0.00 0.00 1.90
6878 8609 7.216317 CAGCAAACGTCAACTAAATAGCATTAC 59.784 37.037 0.00 0.00 0.00 1.89
6879 8610 6.468000 GCAAACGTCAACTAAATAGCATTACC 59.532 38.462 0.00 0.00 0.00 2.85
6880 8611 5.961395 ACGTCAACTAAATAGCATTACCG 57.039 39.130 0.00 0.00 0.00 4.02
6881 8612 4.269363 ACGTCAACTAAATAGCATTACCGC 59.731 41.667 0.00 0.00 0.00 5.68
6885 8616 1.463444 CTAAATAGCATTACCGCGGCC 59.537 52.381 28.58 8.73 36.85 6.13
6886 8617 1.503818 AAATAGCATTACCGCGGCCG 61.504 55.000 28.58 24.05 36.85 6.13
6902 8633 2.434843 CCGGAGGTGGCATAGAGCA 61.435 63.158 0.00 0.00 45.69 4.26
6903 8634 1.971505 CCGGAGGTGGCATAGAGCAA 61.972 60.000 0.00 0.00 45.69 3.91
6904 8635 3.836871 CCGGAGGTGGCATAGAGCAAG 62.837 61.905 0.00 0.00 45.69 4.01
6914 8645 2.611292 GCATAGAGCAAGCGACTGAATT 59.389 45.455 0.00 0.00 44.79 2.17
6934 8665 6.612863 TGAATTGATAAGGAGAGGTGAGATGA 59.387 38.462 0.00 0.00 0.00 2.92
6935 8666 7.291885 TGAATTGATAAGGAGAGGTGAGATGAT 59.708 37.037 0.00 0.00 0.00 2.45
6936 8667 6.416631 TTGATAAGGAGAGGTGAGATGATG 57.583 41.667 0.00 0.00 0.00 3.07
6937 8668 4.282957 TGATAAGGAGAGGTGAGATGATGC 59.717 45.833 0.00 0.00 0.00 3.91
6938 8669 1.039068 AGGAGAGGTGAGATGATGCG 58.961 55.000 0.00 0.00 0.00 4.73
6939 8670 0.749649 GGAGAGGTGAGATGATGCGT 59.250 55.000 0.00 0.00 0.00 5.24
6941 8672 2.468831 GAGAGGTGAGATGATGCGTTC 58.531 52.381 0.00 0.00 0.00 3.95
6942 8673 1.202348 AGAGGTGAGATGATGCGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
6943 8674 0.807667 AGGTGAGATGATGCGTTCGC 60.808 55.000 10.34 10.34 0.00 4.70
6944 8675 0.807667 GGTGAGATGATGCGTTCGCT 60.808 55.000 17.63 4.07 0.00 4.93
6945 8676 0.299895 GTGAGATGATGCGTTCGCTG 59.700 55.000 17.63 0.00 0.00 5.18
6946 8677 0.807275 TGAGATGATGCGTTCGCTGG 60.807 55.000 17.63 0.00 0.00 4.85
6947 8678 1.493950 GAGATGATGCGTTCGCTGGG 61.494 60.000 17.63 0.00 0.00 4.45
6948 8679 1.521457 GATGATGCGTTCGCTGGGA 60.521 57.895 17.63 0.00 0.00 4.37
6949 8680 1.766143 GATGATGCGTTCGCTGGGAC 61.766 60.000 17.63 5.92 0.00 4.46
6950 8681 2.125512 GATGCGTTCGCTGGGACT 60.126 61.111 17.63 0.00 0.00 3.85
6951 8682 2.434884 ATGCGTTCGCTGGGACTG 60.435 61.111 17.63 0.00 0.00 3.51
6952 8683 3.240134 ATGCGTTCGCTGGGACTGT 62.240 57.895 17.63 0.00 0.00 3.55
6953 8684 1.884075 ATGCGTTCGCTGGGACTGTA 61.884 55.000 17.63 0.00 0.00 2.74
6954 8685 2.092882 GCGTTCGCTGGGACTGTAC 61.093 63.158 9.99 0.00 0.00 2.90
6955 8686 1.800315 CGTTCGCTGGGACTGTACG 60.800 63.158 0.00 0.00 0.00 3.67
6956 8687 2.092882 GTTCGCTGGGACTGTACGC 61.093 63.158 0.00 0.00 0.00 4.42
6957 8688 2.566570 TTCGCTGGGACTGTACGCA 61.567 57.895 0.00 0.00 0.00 5.24
6967 8698 3.606886 CTGTACGCAGTGGGAAAGT 57.393 52.632 14.98 0.00 45.73 2.66
6968 8699 1.878953 CTGTACGCAGTGGGAAAGTT 58.121 50.000 14.98 0.00 45.73 2.66
6969 8700 2.218603 CTGTACGCAGTGGGAAAGTTT 58.781 47.619 14.98 0.00 45.73 2.66
6970 8701 2.616842 CTGTACGCAGTGGGAAAGTTTT 59.383 45.455 14.98 0.00 45.73 2.43
6971 8702 2.614983 TGTACGCAGTGGGAAAGTTTTC 59.385 45.455 14.98 0.00 45.73 2.29
6972 8703 1.757682 ACGCAGTGGGAAAGTTTTCA 58.242 45.000 14.98 0.00 42.51 2.69
6973 8704 2.306847 ACGCAGTGGGAAAGTTTTCAT 58.693 42.857 14.98 0.00 42.51 2.57
6984 8715 7.554118 GTGGGAAAGTTTTCATAGATCTGATGA 59.446 37.037 5.18 7.97 38.92 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.658799 TTTCTTCTATATAGCATAGATGGCAAC 57.341 33.333 4.75 0.00 31.45 4.17
63 64 2.030007 CGTGATCTGGGCAAACATGTTT 60.030 45.455 18.13 18.13 0.00 2.83
64 65 1.541147 CGTGATCTGGGCAAACATGTT 59.459 47.619 4.92 4.92 0.00 2.71
65 66 1.167851 CGTGATCTGGGCAAACATGT 58.832 50.000 0.00 0.00 0.00 3.21
66 67 1.167851 ACGTGATCTGGGCAAACATG 58.832 50.000 0.00 0.00 0.00 3.21
67 68 1.909700 AACGTGATCTGGGCAAACAT 58.090 45.000 0.00 0.00 0.00 2.71
68 69 1.686355 AAACGTGATCTGGGCAAACA 58.314 45.000 0.00 0.00 0.00 2.83
81 82 2.792878 TGGGTTGGGGTTATAAACGTG 58.207 47.619 0.00 0.00 0.00 4.49
83 84 2.953648 GGATGGGTTGGGGTTATAAACG 59.046 50.000 0.00 0.00 0.00 3.60
100 101 0.893270 TGTTCAGGCCCAAACGGATG 60.893 55.000 0.00 0.00 0.00 3.51
113 114 5.127519 TCCATTAGGGCAAAATCATGTTCAG 59.872 40.000 0.00 0.00 36.21 3.02
123 124 3.838565 TGTTCACTCCATTAGGGCAAAA 58.161 40.909 0.00 0.00 36.21 2.44
138 139 2.802247 GCAGGGATTTGCTTTTGTTCAC 59.198 45.455 0.00 0.00 40.89 3.18
150 151 2.432510 TGTTCGGTTTTTGCAGGGATTT 59.567 40.909 0.00 0.00 0.00 2.17
177 178 5.766150 TTTTTAGGCATATGGTGGATTCG 57.234 39.130 4.56 0.00 0.00 3.34
238 239 1.363246 GGACCAGAGGTTTTCTCCCT 58.637 55.000 0.00 0.00 43.44 4.20
239 240 1.064825 TGGACCAGAGGTTTTCTCCC 58.935 55.000 0.00 0.00 43.44 4.30
432 434 2.176798 AGGAAGATGACGAGGGATCTCT 59.823 50.000 0.00 0.00 37.86 3.10
483 485 2.874701 GTGGATTTGGATGAGATCGGTG 59.125 50.000 0.00 0.00 0.00 4.94
502 504 1.068121 ACTGGAAGGAAGAAGGGGTG 58.932 55.000 0.00 0.00 39.30 4.61
503 505 1.705745 GAACTGGAAGGAAGAAGGGGT 59.294 52.381 0.00 0.00 39.30 4.95
506 508 2.841442 ACGAACTGGAAGGAAGAAGG 57.159 50.000 0.00 0.00 39.30 3.46
509 511 2.561419 CCACTACGAACTGGAAGGAAGA 59.439 50.000 0.00 0.00 39.30 2.87
515 526 4.345859 ACAAATCCACTACGAACTGGAA 57.654 40.909 0.00 0.00 40.05 3.53
608 619 0.180406 CTAGCTAACGTGGGGGCATT 59.820 55.000 0.00 0.00 0.00 3.56
633 644 1.287739 CCAAAAGGATAAGGCCAGGGA 59.712 52.381 5.01 0.00 0.00 4.20
677 688 4.975147 TGAGGGTTCATATGTACTCCCAAT 59.025 41.667 20.22 2.18 37.56 3.16
734 748 8.930846 ATATCTAAAAGCAGGTTCAGCAATAT 57.069 30.769 0.00 0.00 0.00 1.28
747 761 9.950496 AGAAAAAGACTCAGATATCTAAAAGCA 57.050 29.630 4.54 0.00 0.00 3.91
754 768 6.214191 TGCGAGAAAAAGACTCAGATATCT 57.786 37.500 0.00 0.00 34.47 1.98
755 769 6.893958 TTGCGAGAAAAAGACTCAGATATC 57.106 37.500 0.00 0.00 34.47 1.63
756 770 7.672983 TTTTGCGAGAAAAAGACTCAGATAT 57.327 32.000 0.00 0.00 34.47 1.63
757 771 7.490962 TTTTTGCGAGAAAAAGACTCAGATA 57.509 32.000 0.00 0.00 34.47 1.98
758 772 6.377327 TTTTTGCGAGAAAAAGACTCAGAT 57.623 33.333 0.00 0.00 34.47 2.90
759 773 5.811399 TTTTTGCGAGAAAAAGACTCAGA 57.189 34.783 0.00 0.00 34.47 3.27
778 792 7.747809 AGACCCAGATATCTTCTCTCTTTTT 57.252 36.000 1.33 0.00 29.93 1.94
779 793 7.747809 AAGACCCAGATATCTTCTCTCTTTT 57.252 36.000 1.33 0.00 28.79 2.27
780 794 7.563906 CAAAGACCCAGATATCTTCTCTCTTT 58.436 38.462 1.33 9.82 34.01 2.52
781 795 6.407979 GCAAAGACCCAGATATCTTCTCTCTT 60.408 42.308 1.33 4.48 34.01 2.85
782 796 5.070313 GCAAAGACCCAGATATCTTCTCTCT 59.930 44.000 1.33 0.00 34.01 3.10
783 797 5.296748 GCAAAGACCCAGATATCTTCTCTC 58.703 45.833 1.33 0.00 34.01 3.20
784 798 4.102367 GGCAAAGACCCAGATATCTTCTCT 59.898 45.833 1.33 0.31 34.01 3.10
785 799 4.384940 GGCAAAGACCCAGATATCTTCTC 58.615 47.826 1.33 0.00 34.01 2.87
786 800 4.429854 GGCAAAGACCCAGATATCTTCT 57.570 45.455 1.33 0.74 34.01 2.85
801 815 3.541996 ACAAAAGAAAGGTGGGCAAAG 57.458 42.857 0.00 0.00 0.00 2.77
827 841 7.401484 AATAAAACTGTGGTTTATGTTTGCG 57.599 32.000 1.94 0.00 43.90 4.85
828 842 9.644993 GAAAATAAAACTGTGGTTTATGTTTGC 57.355 29.630 5.36 0.00 43.90 3.68
840 854 5.901552 ACTGGTGTGGAAAATAAAACTGTG 58.098 37.500 0.00 0.00 0.00 3.66
841 855 6.153680 TGAACTGGTGTGGAAAATAAAACTGT 59.846 34.615 0.00 0.00 0.00 3.55
845 859 8.314751 TCTTTTGAACTGGTGTGGAAAATAAAA 58.685 29.630 0.00 0.00 0.00 1.52
860 874 2.351418 TGTGTGCTCGTCTTTTGAACTG 59.649 45.455 0.00 0.00 0.00 3.16
865 879 2.539547 CCAGTTGTGTGCTCGTCTTTTG 60.540 50.000 0.00 0.00 0.00 2.44
872 886 0.307760 GGAAACCAGTTGTGTGCTCG 59.692 55.000 0.00 0.00 0.00 5.03
955 970 6.503217 AGAAGATATTATCCTGCCCATTCTGA 59.497 38.462 0.00 0.00 0.00 3.27
975 990 4.923871 GTCTGCATTTACACGAAGAGAAGA 59.076 41.667 0.00 0.00 0.00 2.87
976 991 4.092091 GGTCTGCATTTACACGAAGAGAAG 59.908 45.833 0.00 0.00 0.00 2.85
977 992 3.994392 GGTCTGCATTTACACGAAGAGAA 59.006 43.478 0.00 0.00 0.00 2.87
978 993 3.006430 TGGTCTGCATTTACACGAAGAGA 59.994 43.478 0.00 0.00 0.00 3.10
981 996 3.684305 TCATGGTCTGCATTTACACGAAG 59.316 43.478 0.00 0.00 0.00 3.79
1059 1105 2.083774 TCTTTCAACATGGCGGACATC 58.916 47.619 0.00 0.00 37.84 3.06
1171 1217 5.033589 AGACTGAAAGCTATAAGCAGCAT 57.966 39.130 1.22 0.00 45.56 3.79
1205 1252 2.769209 AGAGTCCTGGCTGATACCAAT 58.231 47.619 0.00 0.00 39.86 3.16
1416 1463 8.761575 AACAAAGGCACAAAAACATATCATAG 57.238 30.769 0.00 0.00 0.00 2.23
1442 1489 5.918608 ACTCTAATCAGCACGATTACCAAT 58.081 37.500 4.88 0.00 42.76 3.16
1474 1521 7.267128 TGACTTGTTGAGAGCAATTCAAATTT 58.733 30.769 0.02 0.00 36.41 1.82
1532 1579 6.591448 TGCACAGATCAGAATGTACTTACAAG 59.409 38.462 0.00 0.00 39.99 3.16
1533 1580 6.463360 TGCACAGATCAGAATGTACTTACAA 58.537 36.000 0.00 0.00 39.99 2.41
1536 1583 6.758416 GTGATGCACAGATCAGAATGTACTTA 59.242 38.462 0.00 0.00 32.92 2.24
1537 1584 5.583854 GTGATGCACAGATCAGAATGTACTT 59.416 40.000 0.00 0.00 32.92 2.24
1538 1585 5.114780 GTGATGCACAGATCAGAATGTACT 58.885 41.667 0.00 0.00 32.92 2.73
1539 1586 4.272018 GGTGATGCACAGATCAGAATGTAC 59.728 45.833 0.00 0.00 35.86 2.90
1540 1587 4.445453 GGTGATGCACAGATCAGAATGTA 58.555 43.478 0.00 0.00 35.86 2.29
1541 1588 3.276857 GGTGATGCACAGATCAGAATGT 58.723 45.455 0.00 0.00 35.86 2.71
1597 1658 2.413310 ACCCAACTTCAACGTGACTT 57.587 45.000 0.00 0.00 0.00 3.01
1629 1706 1.801178 GCAGACAAGCTCACACCTAAC 59.199 52.381 0.00 0.00 0.00 2.34
1723 1801 7.014711 TGGTAATGAGAATTTTTGTAGGTGCAA 59.985 33.333 0.00 0.00 0.00 4.08
1724 1802 6.491745 TGGTAATGAGAATTTTTGTAGGTGCA 59.508 34.615 0.00 0.00 0.00 4.57
1765 1843 2.290641 GCGATGGGATTTGGTACATCAC 59.709 50.000 0.00 0.00 39.64 3.06
1778 1860 3.473647 CAGGAGGCAGCGATGGGA 61.474 66.667 1.46 0.00 0.00 4.37
1804 1886 0.958091 TTGTTCGCCCAAAGGACATG 59.042 50.000 0.00 0.00 33.47 3.21
1824 1906 6.534793 CACAACATGTATCTGCACACTGTATA 59.465 38.462 0.00 0.00 0.00 1.47
1849 1931 7.065923 GGGAAAAGGATACATAGAAAGTGTCAC 59.934 40.741 0.00 0.00 41.41 3.67
1877 1959 4.606457 GTGCCTCTCACATTGAATACAC 57.394 45.455 0.00 0.00 44.98 2.90
1938 2021 0.388907 CTCGGGCAAATGCACCTTTG 60.389 55.000 7.80 8.17 42.67 2.77
1947 2030 4.210331 AGCTTAATGATTCTCGGGCAAAT 58.790 39.130 0.00 0.00 0.00 2.32
2040 2124 8.192774 ACTGATCAAAACATTAATATGCCACTG 58.807 33.333 0.00 0.00 35.03 3.66
2042 2126 8.931385 AACTGATCAAAACATTAATATGCCAC 57.069 30.769 0.00 0.00 35.03 5.01
2098 2182 6.252995 TGGGTATAAACATGAGAAAGCCTTT 58.747 36.000 0.00 0.00 0.00 3.11
2141 2242 9.476202 TCATACTCAGATGGTGAATTAATAACG 57.524 33.333 0.00 0.00 33.60 3.18
2155 2256 4.725790 TGTCACCACTCATACTCAGATG 57.274 45.455 0.00 0.00 0.00 2.90
2263 2372 0.608035 GGAACTCGATGCCAAACCCA 60.608 55.000 0.00 0.00 0.00 4.51
2280 2389 0.333652 TCACTGGGGTACGATCTGGA 59.666 55.000 0.00 0.00 0.00 3.86
2285 2394 3.371965 AGTTGTATCACTGGGGTACGAT 58.628 45.455 0.00 0.00 0.00 3.73
2317 2436 0.455410 GTGTTGGTTTGTGCTCAGCA 59.545 50.000 0.00 0.00 35.60 4.41
2318 2437 0.455410 TGTGTTGGTTTGTGCTCAGC 59.545 50.000 0.00 0.00 0.00 4.26
2330 2449 2.653557 GGGGGCTTAAGTGTGTTGG 58.346 57.895 4.02 0.00 0.00 3.77
2365 2484 7.637132 CACATCAAAATTGCTTCTTTGTTCAAC 59.363 33.333 5.34 0.00 34.74 3.18
2383 2502 6.492087 CCCTCCTAAACTTTTACCACATCAAA 59.508 38.462 0.00 0.00 0.00 2.69
2413 2533 1.423395 GCAGTCTCGTGAGTCTTTGG 58.577 55.000 0.00 0.00 0.00 3.28
2456 2576 2.216898 GGCATCTACTCCAACTGCATC 58.783 52.381 0.00 0.00 34.56 3.91
2463 2583 2.734755 CCCATTGGCATCTACTCCAA 57.265 50.000 0.00 0.00 45.35 3.53
2530 2661 0.390860 CTAGCAACGGCAGAGGCTAT 59.609 55.000 12.49 0.00 44.61 2.97
2576 2707 0.037734 CCTCCAAACCCTGTACACCC 59.962 60.000 0.00 0.00 0.00 4.61
2633 2765 4.746611 CCAGAAGACATTTTTGCTTTCACC 59.253 41.667 0.00 0.00 0.00 4.02
2734 2868 2.484742 AACCCTCATTCCCAACGTAC 57.515 50.000 0.00 0.00 0.00 3.67
2738 2872 4.251103 AGGATTAACCCTCATTCCCAAC 57.749 45.455 0.00 0.00 40.05 3.77
2871 3007 6.332630 CAAACCTGTTCTGACTGAAAAATGT 58.667 36.000 0.00 0.00 36.30 2.71
2872 3008 5.750067 CCAAACCTGTTCTGACTGAAAAATG 59.250 40.000 0.00 0.00 36.30 2.32
2965 3101 3.855689 AAAAGATTGCAATCGGGACAG 57.144 42.857 28.88 0.00 40.35 3.51
3024 3160 8.989653 AAGTTTCCACAAGTAATTTTCGAAAA 57.010 26.923 24.43 24.43 0.00 2.29
3037 3173 7.848223 AAAAAGGATTTGAAGTTTCCACAAG 57.152 32.000 0.00 0.00 39.02 3.16
3040 3176 9.710900 ATGATAAAAAGGATTTGAAGTTTCCAC 57.289 29.630 0.00 0.00 39.02 4.02
3091 3228 0.179187 CGACGTGCTAGTGGTCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
3132 3269 3.382865 CAGCTCTGTATAGTCCTTCAGCA 59.617 47.826 0.00 0.00 0.00 4.41
3240 3377 3.683587 GAATTTGCTGTCCGCGGCC 62.684 63.158 23.51 10.90 46.11 6.13
3241 3378 2.202479 GAATTTGCTGTCCGCGGC 60.202 61.111 23.51 16.75 46.82 6.53
3246 3383 0.171231 GAAGCCCGAATTTGCTGTCC 59.829 55.000 0.00 0.00 38.00 4.02
3302 3450 4.083110 CCAGAAGTGCTAATTTGAGGTGTG 60.083 45.833 0.00 0.00 0.00 3.82
3307 3455 5.188434 TGGATCCAGAAGTGCTAATTTGAG 58.812 41.667 11.44 0.00 0.00 3.02
3321 3469 8.301132 TTCAAGAATGAGGTATCTGGATCCAGA 61.301 40.741 39.76 39.76 45.57 3.86
3325 3473 6.484977 GGTTTCAAGAATGAGGTATCTGGATC 59.515 42.308 0.00 0.00 36.78 3.36
3329 3477 8.792830 TTAAGGTTTCAAGAATGAGGTATCTG 57.207 34.615 0.00 0.00 36.78 2.90
3330 3478 9.981460 ATTTAAGGTTTCAAGAATGAGGTATCT 57.019 29.630 0.00 0.00 36.78 1.98
3341 3489 9.974980 GTTTTGTATGGATTTAAGGTTTCAAGA 57.025 29.630 0.00 0.00 0.00 3.02
3342 3490 9.757227 TGTTTTGTATGGATTTAAGGTTTCAAG 57.243 29.630 0.00 0.00 0.00 3.02
3345 3493 8.655970 GCATGTTTTGTATGGATTTAAGGTTTC 58.344 33.333 0.00 0.00 0.00 2.78
3385 3533 7.764695 TGTTATTTGATCCACATAGTACGTG 57.235 36.000 0.00 0.00 0.00 4.49
3409 3557 5.435291 CCGACGAGGATTAGGGTAGTATAT 58.565 45.833 0.00 0.00 45.00 0.86
3419 3567 1.269998 GACATCCCCGACGAGGATTAG 59.730 57.143 8.36 1.16 41.52 1.73
3432 3580 1.267261 CACGGAGATAGTCGACATCCC 59.733 57.143 19.50 17.40 0.00 3.85
3433 3581 1.335142 GCACGGAGATAGTCGACATCC 60.335 57.143 19.50 16.93 0.00 3.51
3500 3657 3.760035 GACGCGGAGAAGGAGGCA 61.760 66.667 12.47 0.00 0.00 4.75
3501 3658 3.296709 TTGACGCGGAGAAGGAGGC 62.297 63.158 12.47 0.00 0.00 4.70
3506 3663 2.062779 CGAACTTGACGCGGAGAAG 58.937 57.895 12.47 11.66 0.00 2.85
3507 3664 4.238385 CGAACTTGACGCGGAGAA 57.762 55.556 12.47 0.00 0.00 2.87
3526 3683 3.399770 TGACCGACGCGCTTTTCG 61.400 61.111 5.73 8.13 42.12 3.46
3539 3696 2.032071 CAGGAACGGGTGGTGACC 59.968 66.667 0.00 0.00 42.27 4.02
3540 3697 2.668550 GCAGGAACGGGTGGTGAC 60.669 66.667 0.00 0.00 0.00 3.67
3556 3713 1.675641 AACCGGCAGTTCATCCAGC 60.676 57.895 0.00 0.00 30.99 4.85
3558 3715 1.303236 CCAACCGGCAGTTCATCCA 60.303 57.895 0.00 0.00 36.18 3.41
3569 3726 1.227263 CTATGTCGAGGCCAACCGG 60.227 63.158 5.01 0.00 42.76 5.28
3571 3728 4.857251 CCTATGTCGAGGCCAACC 57.143 61.111 5.01 0.00 0.00 3.77
3580 3737 1.655329 GAGGACGAGGCCTATGTCG 59.345 63.158 24.06 18.19 38.73 4.35
3581 3738 0.468400 AGGAGGACGAGGCCTATGTC 60.468 60.000 23.37 23.37 38.73 3.06
3592 3749 2.727103 GAGGATCCAGAGGAGGACG 58.273 63.158 15.82 0.00 41.30 4.79
3613 3908 4.711949 AGCAGCAGCCGGTTCAGG 62.712 66.667 1.90 0.00 43.56 3.86
3615 3910 4.704833 GGAGCAGCAGCCGGTTCA 62.705 66.667 1.90 0.00 43.56 3.18
3649 3960 1.523258 GACTCGTCGGATCCGGAGA 60.523 63.158 33.62 28.80 40.25 3.71
3746 4058 0.747255 AGACCACCTACGCTATGCTG 59.253 55.000 0.00 0.00 0.00 4.41
3779 4091 2.521958 CTTCCCTGCCGTCCGACATT 62.522 60.000 0.00 0.00 0.00 2.71
3801 4114 3.141488 CTCTCCGTCTCCACCCCG 61.141 72.222 0.00 0.00 0.00 5.73
3819 4132 2.113139 ACCACCCCGAGCACTTTG 59.887 61.111 0.00 0.00 0.00 2.77
3841 4154 3.132481 CTCTTCTCCCTCTCCGCGC 62.132 68.421 0.00 0.00 0.00 6.86
3842 4155 2.485795 CCTCTTCTCCCTCTCCGCG 61.486 68.421 0.00 0.00 0.00 6.46
3843 4156 0.973496 AACCTCTTCTCCCTCTCCGC 60.973 60.000 0.00 0.00 0.00 5.54
3971 4287 0.108019 GGAAACCCAACAGTCCGACT 59.892 55.000 0.00 0.00 0.00 4.18
4066 4405 0.769776 ACCCCTCATATCCAGCCCAG 60.770 60.000 0.00 0.00 0.00 4.45
4088 4427 4.572571 AAACGCCCGGGCTGACAA 62.573 61.111 41.01 0.00 39.32 3.18
4186 4542 3.538614 GAGCATCTACAGCCGGGA 58.461 61.111 2.18 0.00 0.00 5.14
4285 4653 6.213677 TGATGTCGTGTATAATCTTAGTGGC 58.786 40.000 0.00 0.00 0.00 5.01
4308 4680 7.443272 TGCTATTCCAGATCATTCAAGTACATG 59.557 37.037 0.00 0.00 0.00 3.21
4387 4759 9.860898 GGATGGTCATATAAAATCTTAAATGGC 57.139 33.333 0.00 0.00 0.00 4.40
4668 5043 6.384305 AGCCTTCATCTAGGTACTGTGTAATT 59.616 38.462 0.00 0.00 41.52 1.40
4677 5052 4.261801 TGCAAAAGCCTTCATCTAGGTAC 58.738 43.478 0.00 0.00 37.63 3.34
4861 5237 9.347240 ACATTTACCGCTAGAGTAGAAATACTA 57.653 33.333 0.00 0.00 0.00 1.82
4934 5311 7.332557 AGTGATACATCCGTAATTTTGGTACA 58.667 34.615 0.00 0.00 0.00 2.90
4976 5354 8.912988 TGGATGGATAAGAAAATGTTGGATAAC 58.087 33.333 0.00 0.00 37.32 1.89
4993 5371 7.977818 AGCATCTGTATAAAGTTGGATGGATA 58.022 34.615 3.64 0.00 33.44 2.59
4997 5375 6.238842 CCCAAGCATCTGTATAAAGTTGGATG 60.239 42.308 10.33 0.00 36.14 3.51
5011 5389 1.807886 GAGCAAGCCCAAGCATCTG 59.192 57.895 0.00 0.00 43.56 2.90
5013 5391 1.308069 TTCGAGCAAGCCCAAGCATC 61.308 55.000 0.00 0.00 43.56 3.91
5020 5398 0.813210 CTCAGGATTCGAGCAAGCCC 60.813 60.000 0.00 0.00 42.14 5.19
5021 5399 0.176680 TCTCAGGATTCGAGCAAGCC 59.823 55.000 0.00 0.00 41.39 4.35
5026 5404 4.626042 ACATGTTATCTCAGGATTCGAGC 58.374 43.478 0.00 0.00 33.71 5.03
5043 5421 5.640357 GCAATCAATGTTCCATCAAACATGT 59.360 36.000 0.00 0.00 46.49 3.21
5059 5454 4.282703 GGGAATAGGAAGCATGCAATCAAT 59.717 41.667 21.98 11.64 0.00 2.57
5108 5503 6.196353 CCAAACAAGTCATTTGAAGTTGTACG 59.804 38.462 9.00 5.15 39.01 3.67
5112 5507 8.647143 AATACCAAACAAGTCATTTGAAGTTG 57.353 30.769 0.00 3.51 39.01 3.16
5136 5710 3.070446 ACACCATGAAACGTCCTACTGAA 59.930 43.478 0.00 0.00 0.00 3.02
5178 5752 6.015519 ACATTTCCTGCACAAAGTAAGCAATA 60.016 34.615 0.00 0.00 37.89 1.90
5229 5803 6.295916 GGAGGAACTTCTTTACTGAGGATGAA 60.296 42.308 0.00 0.00 41.55 2.57
5265 5839 7.094032 CCAGAAGAACTTGCTGATTTATCCTTT 60.094 37.037 12.14 0.00 0.00 3.11
5295 5869 5.804639 ACACATATAGGACAGTTTGCTTCA 58.195 37.500 0.00 0.00 0.00 3.02
5374 5948 7.033791 ACAAGTGTATCGACTATACCACAAAG 58.966 38.462 0.00 0.00 39.91 2.77
5448 6058 5.279406 CCCAAAGGTGAAGTGCATTAAATGA 60.279 40.000 0.00 0.00 0.00 2.57
5493 6105 6.154445 CCAGCTAATTCAATATGGACAATGC 58.846 40.000 0.00 0.00 0.00 3.56
5536 6148 1.034356 GCTAAAACGTGGTTTGGGGT 58.966 50.000 0.00 0.00 35.80 4.95
5712 6332 6.873605 CCACATGACACAACTAATCTAAGACA 59.126 38.462 0.00 0.00 0.00 3.41
5836 6459 6.592994 TGACATGTTTTTCAGCAATTTGTTGA 59.407 30.769 11.37 11.37 35.80 3.18
5839 6462 5.294060 GGTGACATGTTTTTCAGCAATTTGT 59.706 36.000 0.00 0.00 39.54 2.83
5846 6469 4.305989 TCAAGGTGACATGTTTTTCAGC 57.694 40.909 0.00 2.86 39.96 4.26
5852 6475 6.406177 GGCATAATGATCAAGGTGACATGTTT 60.406 38.462 0.00 0.00 0.00 2.83
5879 6502 4.900635 ACACGTTGAGAAGCAAAAAGAT 57.099 36.364 0.00 0.00 38.44 2.40
5884 6507 3.917380 CACAAAACACGTTGAGAAGCAAA 59.083 39.130 0.00 0.00 38.44 3.68
5888 6511 4.728608 GCTAACACAAAACACGTTGAGAAG 59.271 41.667 0.00 0.00 32.59 2.85
5889 6512 4.393680 AGCTAACACAAAACACGTTGAGAA 59.606 37.500 0.00 0.00 32.59 2.87
5969 6594 0.393077 AACTTGTAGCTGCAGACCGT 59.607 50.000 20.43 4.92 0.00 4.83
6044 6669 5.539048 TCTTGAGCCAAGTACAACTAACTC 58.461 41.667 12.71 0.00 41.66 3.01
6108 6734 0.110486 ATGGTGTTGGGCGAAGAAGT 59.890 50.000 0.00 0.00 0.00 3.01
6121 6747 4.219288 GGAGCTTCAAAAATCTGATGGTGT 59.781 41.667 0.00 0.00 33.01 4.16
6389 7097 3.119955 GGACTTCGGGTACAATTTGAAGC 60.120 47.826 2.79 0.00 39.64 3.86
6480 7250 6.132791 TGGCGATTTTGTGTACTTGTTTAA 57.867 33.333 0.00 0.00 0.00 1.52
6635 7461 6.473455 GGCAAATTCTAAAATTGTCATCCTCG 59.527 38.462 0.00 0.00 35.27 4.63
6659 7529 5.388682 CGACAATTTAAGTTTGCAAGCATGG 60.389 40.000 16.04 0.43 0.00 3.66
6660 7530 5.388682 CCGACAATTTAAGTTTGCAAGCATG 60.389 40.000 16.04 6.82 0.00 4.06
6661 7531 4.685628 CCGACAATTTAAGTTTGCAAGCAT 59.314 37.500 16.04 6.14 0.00 3.79
6674 7544 3.300852 TGTCACGCTACCGACAATTTA 57.699 42.857 0.00 0.00 39.14 1.40
6683 7553 5.008217 TGGCAATTTATATTGTCACGCTACC 59.992 40.000 8.85 0.06 46.43 3.18
6684 7554 6.055231 TGGCAATTTATATTGTCACGCTAC 57.945 37.500 8.85 0.00 46.43 3.58
6715 7585 1.459592 CGAAGGGAGTACTTGCAAACG 59.540 52.381 0.00 0.00 0.00 3.60
6731 7601 7.962934 TTGTGACAAGTAATTTGAAACGAAG 57.037 32.000 0.00 0.00 39.21 3.79
6733 7603 8.744008 TTTTTGTGACAAGTAATTTGAAACGA 57.256 26.923 0.00 0.00 39.21 3.85
6734 7604 9.407514 CATTTTTGTGACAAGTAATTTGAAACG 57.592 29.630 0.00 0.00 39.21 3.60
6805 8536 7.920682 GTCCAGAATTACTTGTCACAAAAATGT 59.079 33.333 0.00 0.00 0.00 2.71
6811 8542 4.951254 TCGTCCAGAATTACTTGTCACAA 58.049 39.130 0.00 0.00 0.00 3.33
6814 8545 4.994852 CCTTTCGTCCAGAATTACTTGTCA 59.005 41.667 0.00 0.00 38.86 3.58
6819 8550 5.105432 GGTACTCCTTTCGTCCAGAATTACT 60.105 44.000 0.00 0.00 38.86 2.24
6826 8557 2.761208 AGATGGTACTCCTTTCGTCCAG 59.239 50.000 0.00 0.00 34.23 3.86
6856 8587 6.673796 GCGGTAATGCTATTTAGTTGACGTTT 60.674 38.462 0.00 0.00 0.00 3.60
6858 8589 4.269363 GCGGTAATGCTATTTAGTTGACGT 59.731 41.667 0.00 0.00 0.00 4.34
6859 8590 4.605354 CGCGGTAATGCTATTTAGTTGACG 60.605 45.833 0.00 0.00 0.00 4.35
6860 8591 4.318546 CCGCGGTAATGCTATTTAGTTGAC 60.319 45.833 19.50 0.00 0.00 3.18
6861 8592 3.805422 CCGCGGTAATGCTATTTAGTTGA 59.195 43.478 19.50 0.00 0.00 3.18
6862 8593 3.606153 GCCGCGGTAATGCTATTTAGTTG 60.606 47.826 28.70 0.00 0.00 3.16
6865 8596 1.463444 GGCCGCGGTAATGCTATTTAG 59.537 52.381 28.70 0.00 0.00 1.85
6866 8597 1.515081 GGCCGCGGTAATGCTATTTA 58.485 50.000 28.70 0.00 0.00 1.40
6867 8598 1.503818 CGGCCGCGGTAATGCTATTT 61.504 55.000 28.70 0.00 0.00 1.40
6868 8599 1.959226 CGGCCGCGGTAATGCTATT 60.959 57.895 28.70 0.00 0.00 1.73
6869 8600 2.357034 CGGCCGCGGTAATGCTAT 60.357 61.111 28.70 0.00 0.00 2.97
6870 8601 4.595538 CCGGCCGCGGTAATGCTA 62.596 66.667 28.70 0.00 0.00 3.49
6885 8616 0.531532 CTTGCTCTATGCCACCTCCG 60.532 60.000 0.00 0.00 42.00 4.63
6886 8617 0.817229 GCTTGCTCTATGCCACCTCC 60.817 60.000 0.00 0.00 42.00 4.30
6888 8619 1.153289 CGCTTGCTCTATGCCACCT 60.153 57.895 0.00 0.00 42.00 4.00
6891 8622 0.460811 CAGTCGCTTGCTCTATGCCA 60.461 55.000 0.00 0.00 42.00 4.92
6892 8623 0.179100 TCAGTCGCTTGCTCTATGCC 60.179 55.000 0.00 0.00 42.00 4.40
6894 8625 3.867493 TCAATTCAGTCGCTTGCTCTATG 59.133 43.478 0.00 0.00 0.00 2.23
6895 8626 4.128925 TCAATTCAGTCGCTTGCTCTAT 57.871 40.909 0.00 0.00 0.00 1.98
6896 8627 3.592898 TCAATTCAGTCGCTTGCTCTA 57.407 42.857 0.00 0.00 0.00 2.43
6897 8628 2.462456 TCAATTCAGTCGCTTGCTCT 57.538 45.000 0.00 0.00 0.00 4.09
6898 8629 4.260538 CCTTATCAATTCAGTCGCTTGCTC 60.261 45.833 0.00 0.00 0.00 4.26
6899 8630 3.624861 CCTTATCAATTCAGTCGCTTGCT 59.375 43.478 0.00 0.00 0.00 3.91
6900 8631 3.623060 TCCTTATCAATTCAGTCGCTTGC 59.377 43.478 0.00 0.00 0.00 4.01
6901 8632 5.111989 TCTCCTTATCAATTCAGTCGCTTG 58.888 41.667 0.00 0.00 0.00 4.01
6902 8633 5.344743 TCTCCTTATCAATTCAGTCGCTT 57.655 39.130 0.00 0.00 0.00 4.68
6903 8634 4.202202 CCTCTCCTTATCAATTCAGTCGCT 60.202 45.833 0.00 0.00 0.00 4.93
6904 8635 4.054671 CCTCTCCTTATCAATTCAGTCGC 58.945 47.826 0.00 0.00 0.00 5.19
6905 8636 5.046529 CACCTCTCCTTATCAATTCAGTCG 58.953 45.833 0.00 0.00 0.00 4.18
6906 8637 6.097554 TCTCACCTCTCCTTATCAATTCAGTC 59.902 42.308 0.00 0.00 0.00 3.51
6907 8638 5.960811 TCTCACCTCTCCTTATCAATTCAGT 59.039 40.000 0.00 0.00 0.00 3.41
6908 8639 6.477053 TCTCACCTCTCCTTATCAATTCAG 57.523 41.667 0.00 0.00 0.00 3.02
6909 8640 6.612863 TCATCTCACCTCTCCTTATCAATTCA 59.387 38.462 0.00 0.00 0.00 2.57
6914 8645 4.282957 GCATCATCTCACCTCTCCTTATCA 59.717 45.833 0.00 0.00 0.00 2.15
6934 8665 1.884075 TACAGTCCCAGCGAACGCAT 61.884 55.000 20.66 3.91 44.88 4.73
6935 8666 2.566570 TACAGTCCCAGCGAACGCA 61.567 57.895 20.66 0.00 44.88 5.24
6936 8667 2.092882 GTACAGTCCCAGCGAACGC 61.093 63.158 11.31 11.31 42.33 4.84
6937 8668 1.800315 CGTACAGTCCCAGCGAACG 60.800 63.158 0.00 0.00 0.00 3.95
6938 8669 2.092882 GCGTACAGTCCCAGCGAAC 61.093 63.158 0.00 0.00 0.00 3.95
6939 8670 2.260434 GCGTACAGTCCCAGCGAA 59.740 61.111 0.00 0.00 0.00 4.70
6941 8672 2.507102 CTGCGTACAGTCCCAGCG 60.507 66.667 0.00 0.00 39.22 5.18
6948 8679 9.993598 TATGAAAACTTTCCCACTGCGTACAGT 62.994 40.741 0.00 0.00 46.00 3.55
6949 8680 5.744968 TGAAAACTTTCCCACTGCGTACAG 61.745 45.833 0.00 0.00 41.90 2.74
6950 8681 2.335316 AAACTTTCCCACTGCGTACA 57.665 45.000 0.00 0.00 0.00 2.90
6951 8682 2.614983 TGAAAACTTTCCCACTGCGTAC 59.385 45.455 0.00 0.00 36.36 3.67
6952 8683 2.920524 TGAAAACTTTCCCACTGCGTA 58.079 42.857 0.00 0.00 36.36 4.42
6953 8684 1.757682 TGAAAACTTTCCCACTGCGT 58.242 45.000 0.00 0.00 36.36 5.24
6954 8685 3.751175 TCTATGAAAACTTTCCCACTGCG 59.249 43.478 0.00 0.00 36.36 5.18
6955 8686 5.649831 AGATCTATGAAAACTTTCCCACTGC 59.350 40.000 0.00 0.00 36.36 4.40
6956 8687 6.881065 TCAGATCTATGAAAACTTTCCCACTG 59.119 38.462 0.00 0.00 36.36 3.66
6957 8688 7.020827 TCAGATCTATGAAAACTTTCCCACT 57.979 36.000 0.00 0.00 36.36 4.00
6958 8689 7.554118 TCATCAGATCTATGAAAACTTTCCCAC 59.446 37.037 0.00 0.00 36.36 4.61
6959 8690 7.632861 TCATCAGATCTATGAAAACTTTCCCA 58.367 34.615 0.00 0.00 36.36 4.37
6960 8691 7.228308 CCTCATCAGATCTATGAAAACTTTCCC 59.772 40.741 0.00 0.00 36.36 3.97
6961 8692 7.989741 TCCTCATCAGATCTATGAAAACTTTCC 59.010 37.037 0.00 0.00 36.36 3.13
6962 8693 8.954950 TCCTCATCAGATCTATGAAAACTTTC 57.045 34.615 0.00 0.00 33.13 2.62
6963 8694 9.917887 ATTCCTCATCAGATCTATGAAAACTTT 57.082 29.630 0.00 0.00 33.13 2.66
6964 8695 9.558396 GATTCCTCATCAGATCTATGAAAACTT 57.442 33.333 0.00 0.00 33.13 2.66
6965 8696 7.871973 CGATTCCTCATCAGATCTATGAAAACT 59.128 37.037 0.00 0.00 33.13 2.66
6966 8697 7.869937 TCGATTCCTCATCAGATCTATGAAAAC 59.130 37.037 0.00 0.00 33.13 2.43
6967 8698 7.955918 TCGATTCCTCATCAGATCTATGAAAA 58.044 34.615 0.00 4.17 33.13 2.29
6968 8699 7.232330 ACTCGATTCCTCATCAGATCTATGAAA 59.768 37.037 0.00 0.00 33.13 2.69
6969 8700 6.718912 ACTCGATTCCTCATCAGATCTATGAA 59.281 38.462 0.00 0.00 33.13 2.57
6970 8701 6.244654 ACTCGATTCCTCATCAGATCTATGA 58.755 40.000 0.00 4.97 32.56 2.15
6971 8702 6.513806 ACTCGATTCCTCATCAGATCTATG 57.486 41.667 0.00 0.51 0.00 2.23
6972 8703 7.377398 CAAACTCGATTCCTCATCAGATCTAT 58.623 38.462 0.00 0.00 0.00 1.98
6973 8704 6.737070 GCAAACTCGATTCCTCATCAGATCTA 60.737 42.308 0.00 0.00 0.00 1.98
6984 8715 2.303022 TCTTGGAGCAAACTCGATTCCT 59.697 45.455 0.00 0.00 44.48 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.