Multiple sequence alignment - TraesCS7B01G204100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G204100 chr7B 100.000 3545 0 0 1 3545 374528043 374531587 0.000000e+00 6547.0
1 TraesCS7B01G204100 chr7B 91.034 290 11 8 482 756 652987947 652987658 9.290000e-101 377.0
2 TraesCS7B01G204100 chr7B 89.744 273 20 6 485 755 94410181 94409915 3.390000e-90 342.0
3 TraesCS7B01G204100 chr7D 97.768 1971 26 8 796 2763 379090062 379092017 0.000000e+00 3380.0
4 TraesCS7B01G204100 chr7D 95.541 785 32 2 2763 3545 377955826 377956609 0.000000e+00 1253.0
5 TraesCS7B01G204100 chr7D 94.944 178 9 0 2763 2940 377962958 377963135 2.690000e-71 279.0
6 TraesCS7B01G204100 chr7D 90.431 209 15 2 283 487 379089847 379090054 1.620000e-68 270.0
7 TraesCS7B01G204100 chr7A 96.683 1990 51 8 774 2763 427556801 427558775 0.000000e+00 3295.0
8 TraesCS7B01G204100 chr7A 90.164 305 29 1 184 487 427556202 427556506 2.560000e-106 396.0
9 TraesCS7B01G204100 chr7A 88.693 283 16 9 487 753 26172629 26172911 7.340000e-87 331.0
10 TraesCS7B01G204100 chr7A 89.744 156 15 1 30 185 427555632 427555786 7.760000e-47 198.0
11 TraesCS7B01G204100 chr2A 96.347 1971 54 8 796 2763 338545549 338547504 0.000000e+00 3225.0
12 TraesCS7B01G204100 chr2A 89.474 209 15 3 283 487 338545336 338545541 1.260000e-64 257.0
13 TraesCS7B01G204100 chr2A 72.924 602 124 27 1870 2462 69314324 69314895 4.700000e-39 172.0
14 TraesCS7B01G204100 chr3A 96.939 784 24 0 2762 3545 740397850 740398633 0.000000e+00 1315.0
15 TraesCS7B01G204100 chr2D 96.051 785 29 1 2763 3545 298744536 298745320 0.000000e+00 1277.0
16 TraesCS7B01G204100 chr2D 91.259 286 10 8 485 755 540821512 540821227 3.340000e-100 375.0
17 TraesCS7B01G204100 chr2D 87.868 272 28 4 487 753 385149032 385149303 7.390000e-82 315.0
18 TraesCS7B01G204100 chr2D 73.059 631 140 26 1870 2485 69275586 69276201 2.790000e-46 196.0
19 TraesCS7B01G204100 chr4B 96.041 783 31 0 2763 3545 417648985 417649767 0.000000e+00 1275.0
20 TraesCS7B01G204100 chr3D 95.547 786 35 0 2760 3545 309066555 309065770 0.000000e+00 1258.0
21 TraesCS7B01G204100 chr3D 90.102 293 14 8 477 754 608457796 608457504 2.010000e-97 366.0
22 TraesCS7B01G204100 chr3D 96.629 178 6 0 2763 2940 309045381 309045204 2.680000e-76 296.0
23 TraesCS7B01G204100 chr6A 92.366 786 53 5 2763 3545 509975836 509976617 0.000000e+00 1112.0
24 TraesCS7B01G204100 chr6A 93.820 178 11 0 2763 2940 509979687 509979864 5.830000e-68 268.0
25 TraesCS7B01G204100 chr6A 77.533 227 42 9 2193 2413 50408419 50408196 1.030000e-25 128.0
26 TraesCS7B01G204100 chr6B 91.436 794 57 3 2763 3545 121137446 121138239 0.000000e+00 1079.0
27 TraesCS7B01G204100 chr3B 90.440 795 63 4 2763 3545 787341970 787341177 0.000000e+00 1035.0
28 TraesCS7B01G204100 chr2B 89.712 729 65 2 2827 3545 106693136 106692408 0.000000e+00 922.0
29 TraesCS7B01G204100 chr2B 91.319 288 9 8 484 755 107096785 107096498 2.580000e-101 379.0
30 TraesCS7B01G204100 chr2B 71.841 831 190 37 1680 2485 105896082 105896893 7.760000e-47 198.0
31 TraesCS7B01G204100 chr5D 91.667 288 9 8 483 755 77866816 77866529 5.550000e-103 385.0
32 TraesCS7B01G204100 chr4A 90.074 272 23 4 484 752 534555008 534555278 2.030000e-92 350.0
33 TraesCS7B01G204100 chr1B 76.613 620 114 24 1870 2463 522743984 522743370 2.660000e-81 313.0
34 TraesCS7B01G204100 chrUn 87.500 280 19 8 488 751 12912522 12912243 3.440000e-80 309.0
35 TraesCS7B01G204100 chrUn 77.542 236 44 9 2184 2413 114234851 114235083 2.220000e-27 134.0
36 TraesCS7B01G204100 chr5B 87.546 273 25 8 488 753 503084075 503083805 1.240000e-79 307.0
37 TraesCS7B01G204100 chr6D 86.833 281 27 10 481 753 460280041 460280319 4.450000e-79 305.0
38 TraesCS7B01G204100 chr1A 86.517 89 10 2 670 756 590995152 590995064 2.910000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G204100 chr7B 374528043 374531587 3544 False 6547.000000 6547 100.0000 1 3545 1 chr7B.!!$F1 3544
1 TraesCS7B01G204100 chr7D 379089847 379092017 2170 False 1825.000000 3380 94.0995 283 2763 2 chr7D.!!$F3 2480
2 TraesCS7B01G204100 chr7D 377955826 377956609 783 False 1253.000000 1253 95.5410 2763 3545 1 chr7D.!!$F1 782
3 TraesCS7B01G204100 chr7A 427555632 427558775 3143 False 1296.333333 3295 92.1970 30 2763 3 chr7A.!!$F2 2733
4 TraesCS7B01G204100 chr2A 338545336 338547504 2168 False 1741.000000 3225 92.9105 283 2763 2 chr2A.!!$F2 2480
5 TraesCS7B01G204100 chr3A 740397850 740398633 783 False 1315.000000 1315 96.9390 2762 3545 1 chr3A.!!$F1 783
6 TraesCS7B01G204100 chr2D 298744536 298745320 784 False 1277.000000 1277 96.0510 2763 3545 1 chr2D.!!$F2 782
7 TraesCS7B01G204100 chr4B 417648985 417649767 782 False 1275.000000 1275 96.0410 2763 3545 1 chr4B.!!$F1 782
8 TraesCS7B01G204100 chr3D 309065770 309066555 785 True 1258.000000 1258 95.5470 2760 3545 1 chr3D.!!$R2 785
9 TraesCS7B01G204100 chr6A 509975836 509979864 4028 False 690.000000 1112 93.0930 2763 3545 2 chr6A.!!$F1 782
10 TraesCS7B01G204100 chr6B 121137446 121138239 793 False 1079.000000 1079 91.4360 2763 3545 1 chr6B.!!$F1 782
11 TraesCS7B01G204100 chr3B 787341177 787341970 793 True 1035.000000 1035 90.4400 2763 3545 1 chr3B.!!$R1 782
12 TraesCS7B01G204100 chr2B 106692408 106693136 728 True 922.000000 922 89.7120 2827 3545 1 chr2B.!!$R1 718
13 TraesCS7B01G204100 chr1B 522743370 522743984 614 True 313.000000 313 76.6130 1870 2463 1 chr1B.!!$R1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.320073 TTAGGAAGGTGCGGTTGTCG 60.320 55.0 0.0 0.0 42.76 4.35 F
824 1556 0.593128 GCTTTCATGCCGTCAACACT 59.407 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 3069 4.504514 GGCATCATCTTGATCTCCTTGCTA 60.505 45.833 0.00 0.0 34.28 3.49 R
2792 3566 0.034059 CTGTTGTGAGGCGTCTTCCT 59.966 55.000 8.06 0.0 39.67 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.317449 GTTAGGAAGGTGCGGTTGT 57.683 52.632 0.00 0.00 0.00 3.32
19 20 1.154197 GTTAGGAAGGTGCGGTTGTC 58.846 55.000 0.00 0.00 0.00 3.18
20 21 0.320073 TTAGGAAGGTGCGGTTGTCG 60.320 55.000 0.00 0.00 42.76 4.35
33 34 0.976963 GTTGTCGCACGATGCAATTG 59.023 50.000 0.00 0.00 45.36 2.32
49 50 8.051909 CGATGCAATTGTAACATTTAGCATTTC 58.948 33.333 7.40 0.00 41.07 2.17
50 51 7.275697 TGCAATTGTAACATTTAGCATTTCG 57.724 32.000 7.40 0.00 0.00 3.46
51 52 6.865726 TGCAATTGTAACATTTAGCATTTCGT 59.134 30.769 7.40 0.00 0.00 3.85
52 53 7.148836 TGCAATTGTAACATTTAGCATTTCGTG 60.149 33.333 7.40 0.00 0.00 4.35
53 54 7.061673 GCAATTGTAACATTTAGCATTTCGTGA 59.938 33.333 7.40 0.00 0.00 4.35
54 55 8.365210 CAATTGTAACATTTAGCATTTCGTGAC 58.635 33.333 0.00 0.00 0.00 3.67
66 67 6.705782 AGCATTTCGTGACATTAGTAAATCG 58.294 36.000 0.00 0.00 0.00 3.34
72 73 5.004061 TCGTGACATTAGTAAATCGCTTTCG 59.996 40.000 8.58 0.00 0.00 3.46
74 75 6.531439 GTGACATTAGTAAATCGCTTTCGTT 58.469 36.000 0.00 0.00 36.96 3.85
78 79 5.675778 TTAGTAAATCGCTTTCGTTCTCG 57.324 39.130 0.00 0.00 36.96 4.04
128 129 7.096477 GCAACAAAGTGTTAGCAATTCAGTAAG 60.096 37.037 0.00 0.00 38.77 2.34
135 136 7.809806 AGTGTTAGCAATTCAGTAAGCAATTTC 59.190 33.333 0.00 0.00 0.00 2.17
148 149 5.619625 AAGCAATTTCTGTCTAAGAGCAC 57.380 39.130 0.00 0.00 35.91 4.40
152 153 7.108847 AGCAATTTCTGTCTAAGAGCACTATT 58.891 34.615 0.00 0.00 35.91 1.73
153 154 7.065563 AGCAATTTCTGTCTAAGAGCACTATTG 59.934 37.037 0.00 0.00 35.91 1.90
160 161 7.761704 TCTGTCTAAGAGCACTATTGACATTTC 59.238 37.037 11.73 0.00 33.28 2.17
170 171 6.384224 CACTATTGACATTTCAGCACACAAT 58.616 36.000 0.00 0.00 31.71 2.71
177 178 6.862608 TGACATTTCAGCACACAATTCAATAC 59.137 34.615 0.00 0.00 0.00 1.89
187 605 6.089820 GCACACAATTCAATACCACAATCAAG 59.910 38.462 0.00 0.00 0.00 3.02
229 648 1.315257 ATGGCAGATTTCGTGGGCAC 61.315 55.000 0.00 0.00 38.69 5.01
252 671 7.498570 GCACTTTCCAGAATCTTGATTCTAGAT 59.501 37.037 21.10 4.98 38.73 1.98
262 681 9.995003 GAATCTTGATTCTAGATAATCCTGTGT 57.005 33.333 14.15 0.00 35.40 3.72
272 691 8.816894 TCTAGATAATCCTGTGTGAAAAGAACT 58.183 33.333 0.00 0.00 0.00 3.01
273 692 9.442047 CTAGATAATCCTGTGTGAAAAGAACTT 57.558 33.333 0.00 0.00 0.00 2.66
275 694 5.520376 AATCCTGTGTGAAAAGAACTTGG 57.480 39.130 0.00 0.00 0.00 3.61
298 717 2.289010 CCAAATGTTGACCTCAAAGGCC 60.289 50.000 0.00 0.00 39.63 5.19
299 718 1.247567 AATGTTGACCTCAAAGGCCG 58.752 50.000 0.00 0.00 39.63 6.13
351 770 4.661222 TCCACATTTTCCTCATTGCACTA 58.339 39.130 0.00 0.00 0.00 2.74
352 771 4.701651 TCCACATTTTCCTCATTGCACTAG 59.298 41.667 0.00 0.00 0.00 2.57
354 773 5.359009 CCACATTTTCCTCATTGCACTAGAT 59.641 40.000 0.00 0.00 0.00 1.98
487 910 5.415701 TCAAAGCTTAGCAACCCTGAATAAG 59.584 40.000 7.07 0.00 31.42 1.73
489 912 4.775236 AGCTTAGCAACCCTGAATAAGAG 58.225 43.478 7.07 0.00 30.50 2.85
498 921 4.034285 CCCTGAATAAGAGGGTGTTTGT 57.966 45.455 0.00 0.00 44.85 2.83
499 922 4.407365 CCCTGAATAAGAGGGTGTTTGTT 58.593 43.478 0.00 0.00 44.85 2.83
500 923 4.832823 CCCTGAATAAGAGGGTGTTTGTTT 59.167 41.667 0.00 0.00 44.85 2.83
501 924 5.048013 CCCTGAATAAGAGGGTGTTTGTTTC 60.048 44.000 0.00 0.00 44.85 2.78
502 925 5.048013 CCTGAATAAGAGGGTGTTTGTTTCC 60.048 44.000 0.00 0.00 0.00 3.13
503 926 5.450453 TGAATAAGAGGGTGTTTGTTTCCA 58.550 37.500 0.00 0.00 0.00 3.53
504 927 5.894393 TGAATAAGAGGGTGTTTGTTTCCAA 59.106 36.000 0.00 0.00 0.00 3.53
505 928 6.040391 TGAATAAGAGGGTGTTTGTTTCCAAG 59.960 38.462 0.00 0.00 0.00 3.61
506 929 2.666317 AGAGGGTGTTTGTTTCCAAGG 58.334 47.619 0.00 0.00 0.00 3.61
507 930 2.243736 AGAGGGTGTTTGTTTCCAAGGA 59.756 45.455 0.00 0.00 0.00 3.36
508 931 2.361119 GAGGGTGTTTGTTTCCAAGGAC 59.639 50.000 0.00 0.00 0.00 3.85
509 932 2.024369 AGGGTGTTTGTTTCCAAGGACT 60.024 45.455 0.00 0.00 0.00 3.85
510 933 2.764010 GGGTGTTTGTTTCCAAGGACTT 59.236 45.455 0.00 0.00 0.00 3.01
511 934 3.955551 GGGTGTTTGTTTCCAAGGACTTA 59.044 43.478 0.00 0.00 0.00 2.24
512 935 4.587262 GGGTGTTTGTTTCCAAGGACTTAT 59.413 41.667 0.00 0.00 0.00 1.73
513 936 5.069914 GGGTGTTTGTTTCCAAGGACTTATT 59.930 40.000 0.00 0.00 0.00 1.40
514 937 5.983118 GGTGTTTGTTTCCAAGGACTTATTG 59.017 40.000 0.00 0.00 0.00 1.90
516 939 5.659079 TGTTTGTTTCCAAGGACTTATTGGT 59.341 36.000 4.75 0.00 46.11 3.67
517 940 6.155393 TGTTTGTTTCCAAGGACTTATTGGTT 59.845 34.615 4.75 0.00 46.11 3.67
518 941 6.800072 TTGTTTCCAAGGACTTATTGGTTT 57.200 33.333 4.75 0.00 46.11 3.27
519 942 7.899648 TTGTTTCCAAGGACTTATTGGTTTA 57.100 32.000 4.75 0.00 46.11 2.01
520 943 7.519032 TGTTTCCAAGGACTTATTGGTTTAG 57.481 36.000 4.75 0.00 46.11 1.85
521 944 6.492087 TGTTTCCAAGGACTTATTGGTTTAGG 59.508 38.462 4.75 0.00 46.11 2.69
522 945 5.187621 TCCAAGGACTTATTGGTTTAGGG 57.812 43.478 4.75 0.00 46.11 3.53
523 946 4.853276 TCCAAGGACTTATTGGTTTAGGGA 59.147 41.667 4.75 0.00 46.11 4.20
524 947 4.948004 CCAAGGACTTATTGGTTTAGGGAC 59.052 45.833 0.00 0.00 41.94 4.46
525 948 5.281037 CCAAGGACTTATTGGTTTAGGGACT 60.281 44.000 0.00 0.00 41.94 3.85
526 949 6.246163 CAAGGACTTATTGGTTTAGGGACTT 58.754 40.000 0.00 0.00 41.75 3.01
527 950 7.399634 CAAGGACTTATTGGTTTAGGGACTTA 58.600 38.462 0.00 0.00 41.75 2.24
528 951 7.578458 AGGACTTATTGGTTTAGGGACTTAA 57.422 36.000 0.00 0.00 41.75 1.85
529 952 7.992295 AGGACTTATTGGTTTAGGGACTTAAA 58.008 34.615 0.00 0.00 41.75 1.52
530 953 8.450434 AGGACTTATTGGTTTAGGGACTTAAAA 58.550 33.333 0.00 0.00 41.75 1.52
531 954 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
555 978 9.682465 AAAAGTCCCTATAAGTTCCATCTAAAC 57.318 33.333 0.00 0.00 0.00 2.01
556 979 7.376335 AGTCCCTATAAGTTCCATCTAAACC 57.624 40.000 0.00 0.00 0.00 3.27
557 980 6.906901 AGTCCCTATAAGTTCCATCTAAACCA 59.093 38.462 0.00 0.00 0.00 3.67
558 981 7.404980 AGTCCCTATAAGTTCCATCTAAACCAA 59.595 37.037 0.00 0.00 0.00 3.67
559 982 8.050930 GTCCCTATAAGTTCCATCTAAACCAAA 58.949 37.037 0.00 0.00 0.00 3.28
560 983 8.050930 TCCCTATAAGTTCCATCTAAACCAAAC 58.949 37.037 0.00 0.00 0.00 2.93
561 984 7.832187 CCCTATAAGTTCCATCTAAACCAAACA 59.168 37.037 0.00 0.00 0.00 2.83
562 985 8.893727 CCTATAAGTTCCATCTAAACCAAACAG 58.106 37.037 0.00 0.00 0.00 3.16
563 986 7.703058 ATAAGTTCCATCTAAACCAAACAGG 57.297 36.000 0.00 0.00 45.67 4.00
564 987 5.319043 AGTTCCATCTAAACCAAACAGGA 57.681 39.130 0.00 0.00 41.22 3.86
565 988 5.316987 AGTTCCATCTAAACCAAACAGGAG 58.683 41.667 0.00 0.00 41.22 3.69
566 989 4.301072 TCCATCTAAACCAAACAGGAGG 57.699 45.455 0.00 0.00 41.22 4.30
567 990 3.010138 TCCATCTAAACCAAACAGGAGGG 59.990 47.826 0.00 0.00 41.22 4.30
568 991 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
569 992 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
571 994 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
572 995 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
573 996 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
574 997 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
575 998 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
576 999 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
577 1000 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
578 1001 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
579 1002 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
580 1003 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
581 1004 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
582 1005 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
583 1006 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
584 1007 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
585 1008 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
586 1009 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
587 1010 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
588 1011 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
589 1012 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
590 1013 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
591 1014 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
592 1015 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
593 1016 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
594 1017 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
595 1018 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
596 1019 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
597 1020 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
598 1021 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
599 1022 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
600 1023 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
601 1024 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
602 1025 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
603 1026 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
604 1027 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
605 1028 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
606 1029 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
607 1030 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
608 1031 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
609 1032 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
610 1033 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
638 1061 6.975949 TCTCAAGGAGAGTCTTATAGGAACT 58.024 40.000 0.00 0.00 44.98 3.01
639 1062 7.415086 TCTCAAGGAGAGTCTTATAGGAACTT 58.585 38.462 0.00 0.00 44.98 2.66
640 1063 8.558312 TCTCAAGGAGAGTCTTATAGGAACTTA 58.442 37.037 0.00 0.00 44.98 2.24
641 1064 9.362151 CTCAAGGAGAGTCTTATAGGAACTTAT 57.638 37.037 0.00 0.00 38.75 1.73
681 1104 8.258007 TCTTATAGGACAAGACAAACATGTAGG 58.742 37.037 0.00 0.00 30.32 3.18
682 1105 4.021102 AGGACAAGACAAACATGTAGGG 57.979 45.455 0.00 0.00 30.32 3.53
683 1106 3.650942 AGGACAAGACAAACATGTAGGGA 59.349 43.478 0.00 0.00 30.32 4.20
684 1107 3.751698 GGACAAGACAAACATGTAGGGAC 59.248 47.826 0.00 0.00 30.32 4.46
685 1108 4.505039 GGACAAGACAAACATGTAGGGACT 60.505 45.833 0.00 0.00 46.37 3.85
686 1109 5.048846 ACAAGACAAACATGTAGGGACTT 57.951 39.130 0.00 1.17 41.75 3.01
687 1110 5.445964 ACAAGACAAACATGTAGGGACTTT 58.554 37.500 0.00 0.00 41.75 2.66
688 1111 5.891551 ACAAGACAAACATGTAGGGACTTTT 59.108 36.000 0.00 0.00 41.75 2.27
689 1112 6.379988 ACAAGACAAACATGTAGGGACTTTTT 59.620 34.615 0.00 0.00 41.75 1.94
690 1113 7.558444 ACAAGACAAACATGTAGGGACTTTTTA 59.442 33.333 0.00 0.00 41.75 1.52
691 1114 7.745620 AGACAAACATGTAGGGACTTTTTAG 57.254 36.000 0.00 0.00 41.75 1.85
692 1115 7.514721 AGACAAACATGTAGGGACTTTTTAGA 58.485 34.615 0.00 0.00 41.75 2.10
693 1116 7.661847 AGACAAACATGTAGGGACTTTTTAGAG 59.338 37.037 0.00 0.00 41.75 2.43
694 1117 7.514721 ACAAACATGTAGGGACTTTTTAGAGA 58.485 34.615 0.00 0.00 41.75 3.10
695 1118 7.444487 ACAAACATGTAGGGACTTTTTAGAGAC 59.556 37.037 0.00 0.00 41.75 3.36
696 1119 6.936968 ACATGTAGGGACTTTTTAGAGACT 57.063 37.500 0.00 0.00 41.75 3.24
697 1120 7.317722 ACATGTAGGGACTTTTTAGAGACTT 57.682 36.000 0.00 0.00 41.75 3.01
698 1121 7.162082 ACATGTAGGGACTTTTTAGAGACTTG 58.838 38.462 0.00 0.00 41.75 3.16
699 1122 6.989155 TGTAGGGACTTTTTAGAGACTTGA 57.011 37.500 0.00 0.00 41.75 3.02
700 1123 6.994221 TGTAGGGACTTTTTAGAGACTTGAG 58.006 40.000 0.00 0.00 41.75 3.02
701 1124 4.900684 AGGGACTTTTTAGAGACTTGAGC 58.099 43.478 0.00 0.00 27.25 4.26
702 1125 4.595350 AGGGACTTTTTAGAGACTTGAGCT 59.405 41.667 0.00 0.00 27.25 4.09
703 1126 5.072464 AGGGACTTTTTAGAGACTTGAGCTT 59.928 40.000 0.00 0.00 27.25 3.74
704 1127 6.270231 AGGGACTTTTTAGAGACTTGAGCTTA 59.730 38.462 0.00 0.00 27.25 3.09
705 1128 7.037945 AGGGACTTTTTAGAGACTTGAGCTTAT 60.038 37.037 0.00 0.00 27.25 1.73
706 1129 8.258708 GGGACTTTTTAGAGACTTGAGCTTATA 58.741 37.037 0.00 0.00 0.00 0.98
707 1130 9.654663 GGACTTTTTAGAGACTTGAGCTTATAA 57.345 33.333 0.00 0.00 0.00 0.98
712 1135 9.436957 TTTTAGAGACTTGAGCTTATAAGTTGG 57.563 33.333 13.91 3.79 37.27 3.77
713 1136 5.983540 AGAGACTTGAGCTTATAAGTTGGG 58.016 41.667 13.91 3.48 37.27 4.12
714 1137 5.721960 AGAGACTTGAGCTTATAAGTTGGGA 59.278 40.000 13.91 0.00 37.27 4.37
715 1138 5.735766 AGACTTGAGCTTATAAGTTGGGAC 58.264 41.667 13.91 0.00 37.27 4.46
716 1139 5.485708 AGACTTGAGCTTATAAGTTGGGACT 59.514 40.000 13.91 1.39 37.27 3.85
717 1140 6.668283 AGACTTGAGCTTATAAGTTGGGACTA 59.332 38.462 13.91 0.00 37.27 2.59
718 1141 7.180408 AGACTTGAGCTTATAAGTTGGGACTAA 59.820 37.037 13.91 0.00 37.27 2.24
719 1142 7.686434 ACTTGAGCTTATAAGTTGGGACTAAA 58.314 34.615 13.91 0.79 33.59 1.85
720 1143 8.161425 ACTTGAGCTTATAAGTTGGGACTAAAA 58.839 33.333 13.91 0.51 33.59 1.52
721 1144 8.927675 TTGAGCTTATAAGTTGGGACTAAAAA 57.072 30.769 13.91 0.00 34.21 1.94
749 1172 8.792830 TTCTAAGACTTATGAATCAAACAGGG 57.207 34.615 0.00 0.00 0.00 4.45
750 1173 5.904362 AAGACTTATGAATCAAACAGGGC 57.096 39.130 0.00 0.00 0.00 5.19
751 1174 4.273318 AGACTTATGAATCAAACAGGGCC 58.727 43.478 0.00 0.00 0.00 5.80
752 1175 4.018050 AGACTTATGAATCAAACAGGGCCT 60.018 41.667 0.00 0.00 0.00 5.19
753 1176 5.191722 AGACTTATGAATCAAACAGGGCCTA 59.808 40.000 5.28 0.00 0.00 3.93
754 1177 5.826643 ACTTATGAATCAAACAGGGCCTAA 58.173 37.500 5.28 0.00 0.00 2.69
755 1178 6.252995 ACTTATGAATCAAACAGGGCCTAAA 58.747 36.000 5.28 0.00 0.00 1.85
756 1179 6.723977 ACTTATGAATCAAACAGGGCCTAAAA 59.276 34.615 5.28 0.00 0.00 1.52
757 1180 7.234577 ACTTATGAATCAAACAGGGCCTAAAAA 59.765 33.333 5.28 0.00 0.00 1.94
758 1181 5.467035 TGAATCAAACAGGGCCTAAAAAG 57.533 39.130 5.28 0.00 0.00 2.27
759 1182 5.144100 TGAATCAAACAGGGCCTAAAAAGA 58.856 37.500 5.28 1.04 0.00 2.52
760 1183 5.243730 TGAATCAAACAGGGCCTAAAAAGAG 59.756 40.000 5.28 0.00 0.00 2.85
761 1184 2.890945 TCAAACAGGGCCTAAAAAGAGC 59.109 45.455 5.28 0.00 0.00 4.09
762 1185 1.534729 AACAGGGCCTAAAAAGAGCG 58.465 50.000 5.28 0.00 0.00 5.03
763 1186 0.690762 ACAGGGCCTAAAAAGAGCGA 59.309 50.000 5.28 0.00 0.00 4.93
764 1187 1.073284 ACAGGGCCTAAAAAGAGCGAA 59.927 47.619 5.28 0.00 0.00 4.70
765 1188 2.290960 ACAGGGCCTAAAAAGAGCGAAT 60.291 45.455 5.28 0.00 0.00 3.34
766 1189 2.755103 CAGGGCCTAAAAAGAGCGAATT 59.245 45.455 5.28 0.00 0.00 2.17
767 1190 3.945285 CAGGGCCTAAAAAGAGCGAATTA 59.055 43.478 5.28 0.00 0.00 1.40
768 1191 4.035675 CAGGGCCTAAAAAGAGCGAATTAG 59.964 45.833 5.28 0.00 0.00 1.73
769 1192 3.243101 GGGCCTAAAAAGAGCGAATTAGC 60.243 47.826 0.84 1.81 37.41 3.09
770 1193 3.377172 GGCCTAAAAAGAGCGAATTAGCA 59.623 43.478 13.26 0.00 40.15 3.49
771 1194 4.496507 GGCCTAAAAAGAGCGAATTAGCAG 60.497 45.833 13.26 0.00 40.15 4.24
772 1195 4.332819 GCCTAAAAAGAGCGAATTAGCAGA 59.667 41.667 13.26 0.00 40.15 4.26
773 1196 5.008118 GCCTAAAAAGAGCGAATTAGCAGAT 59.992 40.000 13.26 0.00 40.15 2.90
774 1197 6.202954 GCCTAAAAAGAGCGAATTAGCAGATA 59.797 38.462 13.26 0.00 40.15 1.98
775 1198 7.095017 GCCTAAAAAGAGCGAATTAGCAGATAT 60.095 37.037 13.26 0.00 40.15 1.63
776 1199 8.226448 CCTAAAAAGAGCGAATTAGCAGATATG 58.774 37.037 13.26 0.00 40.15 1.78
777 1200 7.792374 AAAAAGAGCGAATTAGCAGATATGA 57.208 32.000 13.26 0.00 40.15 2.15
778 1201 6.777526 AAAGAGCGAATTAGCAGATATGAC 57.222 37.500 13.26 0.00 40.15 3.06
779 1202 5.459536 AGAGCGAATTAGCAGATATGACA 57.540 39.130 13.26 0.00 40.15 3.58
780 1203 6.035368 AGAGCGAATTAGCAGATATGACAT 57.965 37.500 13.26 0.00 40.15 3.06
781 1204 5.868258 AGAGCGAATTAGCAGATATGACATG 59.132 40.000 13.26 0.00 40.15 3.21
782 1205 4.391216 AGCGAATTAGCAGATATGACATGC 59.609 41.667 13.26 0.00 40.15 4.06
783 1206 4.436584 GCGAATTAGCAGATATGACATGCC 60.437 45.833 5.59 0.00 40.89 4.40
784 1207 4.934001 CGAATTAGCAGATATGACATGCCT 59.066 41.667 0.00 0.00 40.89 4.75
785 1208 5.063186 CGAATTAGCAGATATGACATGCCTC 59.937 44.000 0.00 0.00 40.89 4.70
786 1209 4.961438 TTAGCAGATATGACATGCCTCA 57.039 40.909 0.00 0.00 40.89 3.86
787 1210 3.123157 AGCAGATATGACATGCCTCAC 57.877 47.619 0.00 0.00 40.89 3.51
788 1211 2.436911 AGCAGATATGACATGCCTCACA 59.563 45.455 0.00 0.00 40.89 3.58
789 1212 2.547211 GCAGATATGACATGCCTCACAC 59.453 50.000 0.00 0.00 33.81 3.82
790 1213 3.800531 CAGATATGACATGCCTCACACA 58.199 45.455 0.00 0.00 0.00 3.72
791 1214 4.193865 CAGATATGACATGCCTCACACAA 58.806 43.478 0.00 0.00 0.00 3.33
792 1215 4.272748 CAGATATGACATGCCTCACACAAG 59.727 45.833 0.00 0.00 0.00 3.16
793 1216 2.574006 ATGACATGCCTCACACAAGT 57.426 45.000 0.00 0.00 0.00 3.16
807 1539 2.431782 ACACAAGTGGAATTTGCTTGCT 59.568 40.909 13.76 3.79 42.20 3.91
824 1556 0.593128 GCTTTCATGCCGTCAACACT 59.407 50.000 0.00 0.00 0.00 3.55
931 1663 2.231235 GCATTCAAACATTCCCGACCTT 59.769 45.455 0.00 0.00 0.00 3.50
2397 3171 2.203280 TTCGTGGCCAACCTGGTG 60.203 61.111 7.24 0.00 40.46 4.17
2556 3330 4.851179 GGTTGATCGACGGGGGCC 62.851 72.222 7.01 0.00 0.00 5.80
2588 3362 5.727434 TCTCCTTTCCCGAATGTTTAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
2589 3363 5.246656 TCTCCTTTCCCGAATGTTTAGTACA 59.753 40.000 0.00 0.00 41.97 2.90
2590 3364 5.484715 TCCTTTCCCGAATGTTTAGTACAG 58.515 41.667 0.00 0.00 40.83 2.74
2591 3365 5.012354 TCCTTTCCCGAATGTTTAGTACAGT 59.988 40.000 0.00 0.00 40.83 3.55
2592 3366 6.211184 TCCTTTCCCGAATGTTTAGTACAGTA 59.789 38.462 0.00 0.00 40.83 2.74
2593 3367 6.534079 CCTTTCCCGAATGTTTAGTACAGTAG 59.466 42.308 0.00 0.00 40.83 2.57
2594 3368 6.594788 TTCCCGAATGTTTAGTACAGTAGT 57.405 37.500 0.00 0.00 40.83 2.73
2595 3369 7.701539 TTCCCGAATGTTTAGTACAGTAGTA 57.298 36.000 0.00 0.00 40.83 1.82
2598 3372 8.046708 TCCCGAATGTTTAGTACAGTAGTAGTA 58.953 37.037 0.00 0.00 40.83 1.82
2614 3388 2.759538 AGTACATCGTAGCTTCTCGC 57.240 50.000 0.00 0.00 39.57 5.03
2667 3441 7.170393 AGGTTAAGCTTGTCTTCTTGTTTTT 57.830 32.000 9.86 0.00 36.25 1.94
2679 3453 9.651913 TGTCTTCTTGTTTTTCTTAATTTGCTT 57.348 25.926 0.00 0.00 0.00 3.91
2707 3481 8.140628 TGTTTGCTAATGAAATGTAATGTGTGT 58.859 29.630 0.00 0.00 0.00 3.72
2708 3482 8.427012 GTTTGCTAATGAAATGTAATGTGTGTG 58.573 33.333 0.00 0.00 0.00 3.82
2725 3499 8.918202 ATGTGTGTGGTTTTCTAATCTAAAGA 57.082 30.769 0.00 0.00 0.00 2.52
2727 3501 7.042321 TGTGTGTGGTTTTCTAATCTAAAGACG 60.042 37.037 0.00 0.00 0.00 4.18
2733 3507 9.595823 TGGTTTTCTAATCTAAAGACGGATTAG 57.404 33.333 13.37 13.37 45.99 1.73
2792 3566 5.232463 GTGTATCGTGGGAAGTAGTTTGAA 58.768 41.667 0.00 0.00 0.00 2.69
2858 3634 2.359531 CACGGTTACAAAGGCTTGGAAA 59.640 45.455 9.04 0.00 37.11 3.13
2876 3652 6.633500 TGGAAACCAAGAAACAATCTACAG 57.367 37.500 0.00 0.00 37.42 2.74
2906 3693 7.125053 TCAACAAGATATGGTAGGTACATGACA 59.875 37.037 0.00 0.00 0.00 3.58
2999 3786 3.256136 AGACTGTACCGAAAGTCCAAGAG 59.744 47.826 7.30 0.00 43.18 2.85
3172 3959 2.176273 GCCATGTAGACAGCGCTGG 61.176 63.158 38.27 21.66 34.19 4.85
3180 3967 0.467384 AGACAGCGCTGGCATTATCT 59.533 50.000 42.41 29.12 42.32 1.98
3252 4039 0.521735 GACGGAGCCAACAACATTCC 59.478 55.000 0.00 0.00 0.00 3.01
3290 4077 2.005960 GCACGATACTCGGCCTCAGT 62.006 60.000 0.00 5.20 45.59 3.41
3521 4311 2.040278 CCAAGTTGAGATGAGGTTCCCA 59.960 50.000 3.87 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.154197 GACAACCGCACCTTCCTAAC 58.846 55.000 0.00 0.00 0.00 2.34
1 2 0.320073 CGACAACCGCACCTTCCTAA 60.320 55.000 0.00 0.00 0.00 2.69
2 3 1.290955 CGACAACCGCACCTTCCTA 59.709 57.895 0.00 0.00 0.00 2.94
3 4 2.030562 CGACAACCGCACCTTCCT 59.969 61.111 0.00 0.00 0.00 3.36
20 21 5.275881 GCTAAATGTTACAATTGCATCGTGC 60.276 40.000 5.05 3.44 45.29 5.34
21 22 5.799435 TGCTAAATGTTACAATTGCATCGTG 59.201 36.000 5.05 0.00 0.00 4.35
22 23 5.948588 TGCTAAATGTTACAATTGCATCGT 58.051 33.333 5.05 0.00 0.00 3.73
23 24 7.453980 AATGCTAAATGTTACAATTGCATCG 57.546 32.000 17.68 0.00 38.69 3.84
24 25 8.051909 CGAAATGCTAAATGTTACAATTGCATC 58.948 33.333 17.68 10.40 38.69 3.91
25 26 7.545265 ACGAAATGCTAAATGTTACAATTGCAT 59.455 29.630 5.05 13.93 40.93 3.96
26 27 6.865726 ACGAAATGCTAAATGTTACAATTGCA 59.134 30.769 5.05 11.28 0.00 4.08
27 28 7.061673 TCACGAAATGCTAAATGTTACAATTGC 59.938 33.333 5.05 0.00 0.00 3.56
28 29 8.365210 GTCACGAAATGCTAAATGTTACAATTG 58.635 33.333 3.24 3.24 0.00 2.32
33 34 9.210426 CTAATGTCACGAAATGCTAAATGTTAC 57.790 33.333 0.00 0.00 0.00 2.50
49 50 5.181084 CGAAAGCGATTTACTAATGTCACG 58.819 41.667 0.00 0.00 40.82 4.35
50 51 6.091123 ACGAAAGCGATTTACTAATGTCAC 57.909 37.500 0.00 0.00 41.64 3.67
51 52 6.588756 AGAACGAAAGCGATTTACTAATGTCA 59.411 34.615 0.00 0.00 41.64 3.58
52 53 6.990546 AGAACGAAAGCGATTTACTAATGTC 58.009 36.000 0.00 0.00 41.64 3.06
53 54 6.237490 CGAGAACGAAAGCGATTTACTAATGT 60.237 38.462 0.00 0.00 42.66 2.71
54 55 6.114288 CGAGAACGAAAGCGATTTACTAATG 58.886 40.000 0.00 0.00 42.66 1.90
66 67 3.918591 TCATTGAGTACGAGAACGAAAGC 59.081 43.478 0.00 0.00 42.66 3.51
72 73 5.061920 AGTTCCTCATTGAGTACGAGAAC 57.938 43.478 17.81 17.81 31.16 3.01
74 75 4.590918 AGAGTTCCTCATTGAGTACGAGA 58.409 43.478 12.54 0.00 32.06 4.04
78 79 6.128418 GCTTTGAAGAGTTCCTCATTGAGTAC 60.128 42.308 12.54 9.80 32.06 2.73
98 99 5.971895 ATTGCTAACACTTTGTTGCTTTG 57.028 34.783 1.73 0.00 41.30 2.77
128 129 6.917217 ATAGTGCTCTTAGACAGAAATTGC 57.083 37.500 0.00 0.00 0.00 3.56
135 136 7.547019 TGAAATGTCAATAGTGCTCTTAGACAG 59.453 37.037 16.89 0.00 37.85 3.51
148 149 7.085746 TGAATTGTGTGCTGAAATGTCAATAG 58.914 34.615 0.00 0.00 31.88 1.73
152 153 4.915158 TGAATTGTGTGCTGAAATGTCA 57.085 36.364 0.00 0.00 0.00 3.58
153 154 6.308766 GGTATTGAATTGTGTGCTGAAATGTC 59.691 38.462 0.00 0.00 0.00 3.06
160 161 4.502171 TGTGGTATTGAATTGTGTGCTG 57.498 40.909 0.00 0.00 0.00 4.41
170 171 5.781210 TGCAACTTGATTGTGGTATTGAA 57.219 34.783 0.00 0.00 40.77 2.69
177 178 6.258230 TCTAAGATTGCAACTTGATTGTGG 57.742 37.500 18.57 1.12 40.77 4.17
208 627 1.031571 GCCCACGAAATCTGCCATCA 61.032 55.000 0.00 0.00 0.00 3.07
209 628 1.031571 TGCCCACGAAATCTGCCATC 61.032 55.000 0.00 0.00 0.00 3.51
212 631 1.244019 AAGTGCCCACGAAATCTGCC 61.244 55.000 0.00 0.00 36.20 4.85
220 639 0.400213 ATTCTGGAAAGTGCCCACGA 59.600 50.000 0.00 0.00 36.20 4.35
221 640 0.804989 GATTCTGGAAAGTGCCCACG 59.195 55.000 0.00 0.00 36.20 4.94
222 641 2.206576 AGATTCTGGAAAGTGCCCAC 57.793 50.000 0.00 0.00 0.00 4.61
252 671 5.009610 GCCAAGTTCTTTTCACACAGGATTA 59.990 40.000 0.00 0.00 0.00 1.75
257 676 2.223805 GGGCCAAGTTCTTTTCACACAG 60.224 50.000 4.39 0.00 0.00 3.66
262 681 3.454082 ACATTTGGGCCAAGTTCTTTTCA 59.546 39.130 19.90 1.02 0.00 2.69
272 691 1.337118 GAGGTCAACATTTGGGCCAA 58.663 50.000 16.66 16.66 0.00 4.52
273 692 0.187117 TGAGGTCAACATTTGGGCCA 59.813 50.000 0.00 0.00 0.00 5.36
275 694 2.289010 CCTTTGAGGTCAACATTTGGGC 60.289 50.000 0.00 0.00 35.28 5.36
351 770 0.911769 TCGAGGGCAACAATGGATCT 59.088 50.000 0.00 0.00 39.74 2.75
352 771 1.672881 CTTCGAGGGCAACAATGGATC 59.327 52.381 0.00 0.00 39.74 3.36
354 773 0.400213 ACTTCGAGGGCAACAATGGA 59.600 50.000 0.00 0.00 39.74 3.41
465 884 5.570320 TCTTATTCAGGGTTGCTAAGCTTT 58.430 37.500 3.20 0.00 0.00 3.51
496 919 6.492087 CCTAAACCAATAAGTCCTTGGAAACA 59.508 38.462 8.96 0.00 44.95 2.83
497 920 6.071560 CCCTAAACCAATAAGTCCTTGGAAAC 60.072 42.308 8.96 0.00 44.95 2.78
498 921 6.014012 CCCTAAACCAATAAGTCCTTGGAAA 58.986 40.000 8.96 0.00 44.95 3.13
499 922 5.313772 TCCCTAAACCAATAAGTCCTTGGAA 59.686 40.000 8.96 0.00 44.95 3.53
500 923 4.853276 TCCCTAAACCAATAAGTCCTTGGA 59.147 41.667 8.96 0.00 44.95 3.53
502 925 5.816682 AGTCCCTAAACCAATAAGTCCTTG 58.183 41.667 0.00 0.00 0.00 3.61
503 926 6.464530 AAGTCCCTAAACCAATAAGTCCTT 57.535 37.500 0.00 0.00 0.00 3.36
504 927 7.578458 TTAAGTCCCTAAACCAATAAGTCCT 57.422 36.000 0.00 0.00 0.00 3.85
505 928 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
529 952 9.682465 GTTTAGATGGAACTTATAGGGACTTTT 57.318 33.333 0.00 0.00 41.75 2.27
530 953 8.272889 GGTTTAGATGGAACTTATAGGGACTTT 58.727 37.037 0.00 0.00 41.75 2.66
531 954 7.404980 TGGTTTAGATGGAACTTATAGGGACTT 59.595 37.037 0.00 0.00 41.75 3.01
532 955 6.906901 TGGTTTAGATGGAACTTATAGGGACT 59.093 38.462 0.00 0.00 46.37 3.85
533 956 7.133133 TGGTTTAGATGGAACTTATAGGGAC 57.867 40.000 0.00 0.00 0.00 4.46
534 957 7.758820 TTGGTTTAGATGGAACTTATAGGGA 57.241 36.000 0.00 0.00 0.00 4.20
535 958 7.832187 TGTTTGGTTTAGATGGAACTTATAGGG 59.168 37.037 0.00 0.00 0.00 3.53
536 959 8.801882 TGTTTGGTTTAGATGGAACTTATAGG 57.198 34.615 0.00 0.00 0.00 2.57
537 960 8.893727 CCTGTTTGGTTTAGATGGAACTTATAG 58.106 37.037 0.00 0.00 0.00 1.31
538 961 8.607713 TCCTGTTTGGTTTAGATGGAACTTATA 58.392 33.333 0.00 0.00 37.07 0.98
539 962 7.466804 TCCTGTTTGGTTTAGATGGAACTTAT 58.533 34.615 0.00 0.00 37.07 1.73
540 963 6.843752 TCCTGTTTGGTTTAGATGGAACTTA 58.156 36.000 0.00 0.00 37.07 2.24
541 964 5.701224 TCCTGTTTGGTTTAGATGGAACTT 58.299 37.500 0.00 0.00 37.07 2.66
542 965 5.316987 CTCCTGTTTGGTTTAGATGGAACT 58.683 41.667 0.00 0.00 37.07 3.01
543 966 4.459337 CCTCCTGTTTGGTTTAGATGGAAC 59.541 45.833 0.00 0.00 37.07 3.62
544 967 4.508405 CCCTCCTGTTTGGTTTAGATGGAA 60.508 45.833 0.00 0.00 37.07 3.53
545 968 3.010138 CCCTCCTGTTTGGTTTAGATGGA 59.990 47.826 0.00 0.00 37.07 3.41
546 969 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
547 970 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
548 971 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
549 972 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
550 973 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
551 974 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
552 975 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
553 976 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
554 977 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
555 978 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
556 979 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
557 980 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
558 981 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
559 982 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
560 983 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
561 984 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
562 985 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
563 986 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
564 987 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
565 988 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
566 989 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
567 990 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
568 991 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
569 992 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
570 993 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
571 994 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
572 995 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
573 996 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
574 997 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
575 998 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
576 999 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
577 1000 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
578 1001 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
579 1002 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
580 1003 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
581 1004 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
582 1005 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
583 1006 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
584 1007 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
585 1008 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
586 1009 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
587 1010 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
588 1011 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
589 1012 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
590 1013 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
591 1014 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
592 1015 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
593 1016 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
594 1017 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
595 1018 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
596 1019 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
597 1020 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
598 1021 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
614 1037 6.975949 AGTTCCTATAAGACTCTCCTTGAGA 58.024 40.000 0.00 0.00 45.39 3.27
655 1078 8.258007 CCTACATGTTTGTCTTGTCCTATAAGA 58.742 37.037 2.30 0.00 37.28 2.10
656 1079 7.495934 CCCTACATGTTTGTCTTGTCCTATAAG 59.504 40.741 2.30 0.00 37.28 1.73
657 1080 7.181305 TCCCTACATGTTTGTCTTGTCCTATAA 59.819 37.037 2.30 0.00 37.28 0.98
658 1081 6.670464 TCCCTACATGTTTGTCTTGTCCTATA 59.330 38.462 2.30 0.00 37.28 1.31
659 1082 5.487488 TCCCTACATGTTTGTCTTGTCCTAT 59.513 40.000 2.30 0.00 37.28 2.57
660 1083 4.841813 TCCCTACATGTTTGTCTTGTCCTA 59.158 41.667 2.30 0.00 37.28 2.94
661 1084 3.650942 TCCCTACATGTTTGTCTTGTCCT 59.349 43.478 2.30 0.00 37.28 3.85
662 1085 3.751698 GTCCCTACATGTTTGTCTTGTCC 59.248 47.826 2.30 0.00 37.28 4.02
663 1086 4.642429 AGTCCCTACATGTTTGTCTTGTC 58.358 43.478 2.30 0.00 37.28 3.18
664 1087 4.706842 AGTCCCTACATGTTTGTCTTGT 57.293 40.909 2.30 0.00 37.28 3.16
665 1088 6.391227 AAAAGTCCCTACATGTTTGTCTTG 57.609 37.500 2.30 0.00 37.28 3.02
666 1089 7.996644 TCTAAAAAGTCCCTACATGTTTGTCTT 59.003 33.333 2.30 0.61 37.28 3.01
667 1090 7.514721 TCTAAAAAGTCCCTACATGTTTGTCT 58.485 34.615 2.30 0.00 37.28 3.41
668 1091 7.660208 TCTCTAAAAAGTCCCTACATGTTTGTC 59.340 37.037 2.30 0.00 37.28 3.18
669 1092 7.444487 GTCTCTAAAAAGTCCCTACATGTTTGT 59.556 37.037 2.30 0.00 39.98 2.83
670 1093 7.661847 AGTCTCTAAAAAGTCCCTACATGTTTG 59.338 37.037 2.30 0.00 0.00 2.93
671 1094 7.746703 AGTCTCTAAAAAGTCCCTACATGTTT 58.253 34.615 2.30 0.00 0.00 2.83
672 1095 7.317722 AGTCTCTAAAAAGTCCCTACATGTT 57.682 36.000 2.30 0.00 0.00 2.71
673 1096 6.936968 AGTCTCTAAAAAGTCCCTACATGT 57.063 37.500 2.69 2.69 0.00 3.21
674 1097 7.386851 TCAAGTCTCTAAAAAGTCCCTACATG 58.613 38.462 0.00 0.00 0.00 3.21
675 1098 7.554959 TCAAGTCTCTAAAAAGTCCCTACAT 57.445 36.000 0.00 0.00 0.00 2.29
676 1099 6.518537 GCTCAAGTCTCTAAAAAGTCCCTACA 60.519 42.308 0.00 0.00 0.00 2.74
677 1100 5.870433 GCTCAAGTCTCTAAAAAGTCCCTAC 59.130 44.000 0.00 0.00 0.00 3.18
678 1101 5.780793 AGCTCAAGTCTCTAAAAAGTCCCTA 59.219 40.000 0.00 0.00 0.00 3.53
679 1102 4.595350 AGCTCAAGTCTCTAAAAAGTCCCT 59.405 41.667 0.00 0.00 0.00 4.20
680 1103 4.900684 AGCTCAAGTCTCTAAAAAGTCCC 58.099 43.478 0.00 0.00 0.00 4.46
681 1104 9.654663 TTATAAGCTCAAGTCTCTAAAAAGTCC 57.345 33.333 0.00 0.00 0.00 3.85
686 1109 9.436957 CCAACTTATAAGCTCAAGTCTCTAAAA 57.563 33.333 12.54 0.00 33.92 1.52
687 1110 8.041323 CCCAACTTATAAGCTCAAGTCTCTAAA 58.959 37.037 12.54 0.00 33.92 1.85
688 1111 7.399191 TCCCAACTTATAAGCTCAAGTCTCTAA 59.601 37.037 12.54 0.00 33.92 2.10
689 1112 6.895756 TCCCAACTTATAAGCTCAAGTCTCTA 59.104 38.462 12.54 0.00 33.92 2.43
690 1113 5.721960 TCCCAACTTATAAGCTCAAGTCTCT 59.278 40.000 12.54 0.00 33.92 3.10
691 1114 5.813157 GTCCCAACTTATAAGCTCAAGTCTC 59.187 44.000 12.54 0.00 33.92 3.36
692 1115 5.485708 AGTCCCAACTTATAAGCTCAAGTCT 59.514 40.000 12.54 1.43 33.92 3.24
693 1116 5.735766 AGTCCCAACTTATAAGCTCAAGTC 58.264 41.667 12.54 0.00 33.92 3.01
694 1117 5.763876 AGTCCCAACTTATAAGCTCAAGT 57.236 39.130 12.54 3.22 36.56 3.16
695 1118 8.561738 TTTTAGTCCCAACTTATAAGCTCAAG 57.438 34.615 12.54 0.00 36.92 3.02
696 1119 8.927675 TTTTTAGTCCCAACTTATAAGCTCAA 57.072 30.769 12.54 0.00 36.92 3.02
723 1146 9.401058 CCCTGTTTGATTCATAAGTCTTAGAAT 57.599 33.333 12.99 12.99 33.70 2.40
724 1147 7.336931 GCCCTGTTTGATTCATAAGTCTTAGAA 59.663 37.037 0.00 3.40 0.00 2.10
725 1148 6.823689 GCCCTGTTTGATTCATAAGTCTTAGA 59.176 38.462 0.00 0.00 0.00 2.10
726 1149 6.038714 GGCCCTGTTTGATTCATAAGTCTTAG 59.961 42.308 0.00 0.00 0.00 2.18
727 1150 5.885912 GGCCCTGTTTGATTCATAAGTCTTA 59.114 40.000 0.00 0.00 0.00 2.10
728 1151 4.706962 GGCCCTGTTTGATTCATAAGTCTT 59.293 41.667 0.00 0.00 0.00 3.01
729 1152 4.018050 AGGCCCTGTTTGATTCATAAGTCT 60.018 41.667 0.00 0.00 0.00 3.24
730 1153 4.273318 AGGCCCTGTTTGATTCATAAGTC 58.727 43.478 0.00 0.00 0.00 3.01
731 1154 4.322057 AGGCCCTGTTTGATTCATAAGT 57.678 40.909 0.00 0.00 0.00 2.24
732 1155 6.773976 TTTAGGCCCTGTTTGATTCATAAG 57.226 37.500 0.00 0.00 0.00 1.73
733 1156 7.453126 TCTTTTTAGGCCCTGTTTGATTCATAA 59.547 33.333 0.00 0.00 0.00 1.90
734 1157 6.951198 TCTTTTTAGGCCCTGTTTGATTCATA 59.049 34.615 0.00 0.00 0.00 2.15
735 1158 5.779771 TCTTTTTAGGCCCTGTTTGATTCAT 59.220 36.000 0.00 0.00 0.00 2.57
736 1159 5.144100 TCTTTTTAGGCCCTGTTTGATTCA 58.856 37.500 0.00 0.00 0.00 2.57
737 1160 5.714047 CTCTTTTTAGGCCCTGTTTGATTC 58.286 41.667 0.00 0.00 0.00 2.52
738 1161 4.021104 GCTCTTTTTAGGCCCTGTTTGATT 60.021 41.667 0.00 0.00 0.00 2.57
739 1162 3.511540 GCTCTTTTTAGGCCCTGTTTGAT 59.488 43.478 0.00 0.00 0.00 2.57
740 1163 2.890945 GCTCTTTTTAGGCCCTGTTTGA 59.109 45.455 0.00 0.00 0.00 2.69
741 1164 2.351738 CGCTCTTTTTAGGCCCTGTTTG 60.352 50.000 0.00 0.00 0.00 2.93
742 1165 1.886542 CGCTCTTTTTAGGCCCTGTTT 59.113 47.619 0.00 0.00 0.00 2.83
743 1166 1.073284 TCGCTCTTTTTAGGCCCTGTT 59.927 47.619 0.00 0.00 0.00 3.16
744 1167 0.690762 TCGCTCTTTTTAGGCCCTGT 59.309 50.000 0.00 0.00 0.00 4.00
745 1168 1.821216 TTCGCTCTTTTTAGGCCCTG 58.179 50.000 0.00 0.00 0.00 4.45
746 1169 2.808906 ATTCGCTCTTTTTAGGCCCT 57.191 45.000 0.00 0.00 0.00 5.19
747 1170 3.243101 GCTAATTCGCTCTTTTTAGGCCC 60.243 47.826 0.00 0.00 0.00 5.80
748 1171 3.377172 TGCTAATTCGCTCTTTTTAGGCC 59.623 43.478 0.00 0.00 0.00 5.19
749 1172 4.332819 TCTGCTAATTCGCTCTTTTTAGGC 59.667 41.667 3.41 0.00 0.00 3.93
750 1173 6.610741 ATCTGCTAATTCGCTCTTTTTAGG 57.389 37.500 3.41 0.00 0.00 2.69
751 1174 8.982685 TCATATCTGCTAATTCGCTCTTTTTAG 58.017 33.333 3.41 0.00 0.00 1.85
752 1175 8.765219 GTCATATCTGCTAATTCGCTCTTTTTA 58.235 33.333 3.41 0.00 0.00 1.52
753 1176 7.280876 TGTCATATCTGCTAATTCGCTCTTTTT 59.719 33.333 3.41 0.00 0.00 1.94
754 1177 6.763135 TGTCATATCTGCTAATTCGCTCTTTT 59.237 34.615 3.41 0.00 0.00 2.27
755 1178 6.283694 TGTCATATCTGCTAATTCGCTCTTT 58.716 36.000 3.41 0.00 0.00 2.52
756 1179 5.847304 TGTCATATCTGCTAATTCGCTCTT 58.153 37.500 3.41 0.00 0.00 2.85
757 1180 5.459536 TGTCATATCTGCTAATTCGCTCT 57.540 39.130 3.41 0.00 0.00 4.09
758 1181 5.445673 GCATGTCATATCTGCTAATTCGCTC 60.446 44.000 3.41 0.00 33.15 5.03
759 1182 4.391216 GCATGTCATATCTGCTAATTCGCT 59.609 41.667 3.41 0.00 33.15 4.93
760 1183 4.436584 GGCATGTCATATCTGCTAATTCGC 60.437 45.833 0.00 0.00 36.18 4.70
761 1184 4.934001 AGGCATGTCATATCTGCTAATTCG 59.066 41.667 0.00 0.00 36.18 3.34
762 1185 5.936372 TGAGGCATGTCATATCTGCTAATTC 59.064 40.000 0.00 0.00 36.18 2.17
763 1186 5.704515 GTGAGGCATGTCATATCTGCTAATT 59.295 40.000 0.00 0.00 36.18 1.40
764 1187 5.221783 TGTGAGGCATGTCATATCTGCTAAT 60.222 40.000 0.00 0.00 36.18 1.73
765 1188 4.101430 TGTGAGGCATGTCATATCTGCTAA 59.899 41.667 0.00 0.00 36.18 3.09
766 1189 3.642848 TGTGAGGCATGTCATATCTGCTA 59.357 43.478 0.00 0.00 36.18 3.49
767 1190 2.436911 TGTGAGGCATGTCATATCTGCT 59.563 45.455 0.00 0.00 36.18 4.24
768 1191 2.547211 GTGTGAGGCATGTCATATCTGC 59.453 50.000 0.00 0.00 35.16 4.26
769 1192 3.800531 TGTGTGAGGCATGTCATATCTG 58.199 45.455 0.00 0.00 0.00 2.90
770 1193 4.080695 ACTTGTGTGAGGCATGTCATATCT 60.081 41.667 0.00 0.00 0.00 1.98
771 1194 4.034858 CACTTGTGTGAGGCATGTCATATC 59.965 45.833 0.00 0.00 46.55 1.63
772 1195 3.943381 CACTTGTGTGAGGCATGTCATAT 59.057 43.478 0.00 0.00 46.55 1.78
773 1196 3.337358 CACTTGTGTGAGGCATGTCATA 58.663 45.455 0.00 0.00 46.55 2.15
774 1197 2.156917 CACTTGTGTGAGGCATGTCAT 58.843 47.619 0.00 0.00 46.55 3.06
775 1198 1.596603 CACTTGTGTGAGGCATGTCA 58.403 50.000 0.00 0.00 46.55 3.58
776 1199 0.877071 CCACTTGTGTGAGGCATGTC 59.123 55.000 0.00 0.00 46.55 3.06
777 1200 0.473755 TCCACTTGTGTGAGGCATGT 59.526 50.000 0.00 0.00 46.55 3.21
778 1201 1.608055 TTCCACTTGTGTGAGGCATG 58.392 50.000 0.00 0.00 46.55 4.06
779 1202 2.592102 ATTCCACTTGTGTGAGGCAT 57.408 45.000 0.00 0.00 46.55 4.40
780 1203 2.361757 CAAATTCCACTTGTGTGAGGCA 59.638 45.455 0.00 0.00 46.55 4.75
781 1204 2.863704 GCAAATTCCACTTGTGTGAGGC 60.864 50.000 0.00 0.00 46.55 4.70
782 1205 2.624838 AGCAAATTCCACTTGTGTGAGG 59.375 45.455 0.00 0.00 46.55 3.86
783 1206 3.996150 AGCAAATTCCACTTGTGTGAG 57.004 42.857 0.00 0.00 46.55 3.51
784 1207 3.737663 GCAAGCAAATTCCACTTGTGTGA 60.738 43.478 13.45 0.00 46.55 3.58
785 1208 2.540931 GCAAGCAAATTCCACTTGTGTG 59.459 45.455 13.45 0.00 42.20 3.82
786 1209 2.431782 AGCAAGCAAATTCCACTTGTGT 59.568 40.909 13.45 3.24 42.20 3.72
787 1210 3.102052 AGCAAGCAAATTCCACTTGTG 57.898 42.857 13.45 0.00 42.20 3.33
788 1211 3.825143 AAGCAAGCAAATTCCACTTGT 57.175 38.095 13.45 2.66 42.20 3.16
789 1212 4.121317 TGAAAGCAAGCAAATTCCACTTG 58.879 39.130 9.53 9.53 42.90 3.16
790 1213 4.405116 TGAAAGCAAGCAAATTCCACTT 57.595 36.364 0.00 0.00 0.00 3.16
791 1214 4.312443 CATGAAAGCAAGCAAATTCCACT 58.688 39.130 0.00 0.00 0.00 4.00
792 1215 3.120442 GCATGAAAGCAAGCAAATTCCAC 60.120 43.478 0.00 0.00 38.53 4.02
793 1216 3.068560 GCATGAAAGCAAGCAAATTCCA 58.931 40.909 0.00 0.00 38.53 3.53
794 1217 2.417586 GGCATGAAAGCAAGCAAATTCC 59.582 45.455 0.00 0.00 40.33 3.01
807 1539 1.601903 GTGAGTGTTGACGGCATGAAA 59.398 47.619 0.00 0.00 0.00 2.69
842 1574 3.756963 GGGAAAATAATCTGCGGGGATAC 59.243 47.826 0.00 0.00 0.00 2.24
931 1663 5.900425 TGCTTCATTTGTACTGCAAGAAAA 58.100 33.333 0.00 0.00 38.47 2.29
2295 3069 4.504514 GGCATCATCTTGATCTCCTTGCTA 60.505 45.833 0.00 0.00 34.28 3.49
2397 3171 2.182030 CGCCACTCGAACTCCCTC 59.818 66.667 0.00 0.00 41.67 4.30
2556 3330 2.027192 TCGGGAAAGGAGAAGATGGTTG 60.027 50.000 0.00 0.00 0.00 3.77
2588 3362 6.345961 CGAGAAGCTACGATGTACTACTACTG 60.346 46.154 0.00 0.00 0.00 2.74
2589 3363 5.691305 CGAGAAGCTACGATGTACTACTACT 59.309 44.000 0.00 0.00 0.00 2.57
2590 3364 5.612276 GCGAGAAGCTACGATGTACTACTAC 60.612 48.000 11.08 0.00 44.04 2.73
2591 3365 4.447054 GCGAGAAGCTACGATGTACTACTA 59.553 45.833 11.08 0.00 44.04 1.82
2592 3366 3.248125 GCGAGAAGCTACGATGTACTACT 59.752 47.826 11.08 0.00 44.04 2.57
2593 3367 3.543670 GCGAGAAGCTACGATGTACTAC 58.456 50.000 11.08 0.00 44.04 2.73
2594 3368 3.874400 GCGAGAAGCTACGATGTACTA 57.126 47.619 11.08 0.00 44.04 1.82
2595 3369 2.759538 GCGAGAAGCTACGATGTACT 57.240 50.000 11.08 0.00 44.04 2.73
2614 3388 9.662947 TTACCATCTTTATATGATCATGAGCAG 57.337 33.333 19.71 4.58 0.00 4.24
2645 3419 8.689251 AAGAAAAACAAGAAGACAAGCTTAAC 57.311 30.769 0.00 0.00 36.83 2.01
2667 3441 9.539825 TCATTAGCAAACAAAAGCAAATTAAGA 57.460 25.926 0.00 0.00 0.00 2.10
2679 3453 9.539825 ACACATTACATTTCATTAGCAAACAAA 57.460 25.926 0.00 0.00 0.00 2.83
2680 3454 8.976471 CACACATTACATTTCATTAGCAAACAA 58.024 29.630 0.00 0.00 0.00 2.83
2681 3455 8.140628 ACACACATTACATTTCATTAGCAAACA 58.859 29.630 0.00 0.00 0.00 2.83
2682 3456 8.427012 CACACACATTACATTTCATTAGCAAAC 58.573 33.333 0.00 0.00 0.00 2.93
2725 3499 7.065803 ACGTTCATTGATTTCATTCTAATCCGT 59.934 33.333 0.00 0.00 32.29 4.69
2727 3501 9.651718 GTACGTTCATTGATTTCATTCTAATCC 57.348 33.333 0.00 0.00 32.29 3.01
2733 3507 7.064609 TCTCCTGTACGTTCATTGATTTCATTC 59.935 37.037 0.00 0.00 0.00 2.67
2741 3515 4.866508 AGTTCTCCTGTACGTTCATTGA 57.133 40.909 0.00 0.00 0.00 2.57
2779 3553 3.432592 GCGTCTTCCTTCAAACTACTTCC 59.567 47.826 0.00 0.00 0.00 3.46
2792 3566 0.034059 CTGTTGTGAGGCGTCTTCCT 59.966 55.000 8.06 0.00 39.67 3.36
2858 3634 7.016153 TGATACCTGTAGATTGTTTCTTGGT 57.984 36.000 0.00 0.00 36.23 3.67
2876 3652 7.959175 TGTACCTACCATATCTTGTTGATACC 58.041 38.462 0.00 0.00 40.12 2.73
2999 3786 0.108756 GGGTCTACCGTCTCAGTTGC 60.109 60.000 0.00 0.00 36.71 4.17
3252 4039 1.617755 CTGTAGCTCACGTTGTGGCG 61.618 60.000 0.00 0.00 35.81 5.69
3290 4077 0.242825 CACGGTTTCTCGCTCCAGTA 59.757 55.000 0.00 0.00 0.00 2.74
3521 4311 1.476471 GCCTCTACATGCATGCTCCTT 60.476 52.381 26.53 9.28 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.