Multiple sequence alignment - TraesCS7B01G203800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G203800 chr7B 100.000 8045 0 0 1 8045 373781108 373789152 0.000000e+00 14857.0
1 TraesCS7B01G203800 chr7B 96.552 435 11 3 164 597 677526797 677526366 0.000000e+00 717.0
2 TraesCS7B01G203800 chr7B 90.299 536 29 15 7513 8043 10176320 10176837 0.000000e+00 680.0
3 TraesCS7B01G203800 chr7B 90.071 141 14 0 1408 1548 213479694 213479554 4.960000e-42 183.0
4 TraesCS7B01G203800 chr7B 94.737 95 5 0 3269 3363 213476798 213476704 1.810000e-31 148.0
5 TraesCS7B01G203800 chr7D 92.818 1629 81 24 409 2027 404241302 404242904 0.000000e+00 2327.0
6 TraesCS7B01G203800 chr7D 97.577 1197 26 3 715 1909 405106753 405107948 0.000000e+00 2047.0
7 TraesCS7B01G203800 chr7D 95.984 996 35 3 5607 6601 405114745 405115736 0.000000e+00 1613.0
8 TraesCS7B01G203800 chr7D 98.788 825 9 1 2025 2848 404243029 404243853 0.000000e+00 1467.0
9 TraesCS7B01G203800 chr7D 93.469 934 32 3 5668 6601 404246949 404247853 0.000000e+00 1360.0
10 TraesCS7B01G203800 chr7D 95.433 854 29 8 4589 5436 404246096 404246945 0.000000e+00 1352.0
11 TraesCS7B01G203800 chr7D 95.707 792 14 5 2842 3616 404243911 404244699 0.000000e+00 1256.0
12 TraesCS7B01G203800 chr7D 93.216 796 24 5 4589 5358 405113237 405114028 0.000000e+00 1144.0
13 TraesCS7B01G203800 chr7D 96.793 686 16 4 3907 4590 405112513 405113194 0.000000e+00 1140.0
14 TraesCS7B01G203800 chr7D 97.158 563 14 1 4030 4590 404245491 404246053 0.000000e+00 950.0
15 TraesCS7B01G203800 chr7D 98.478 460 7 0 6601 7060 404247909 404248368 0.000000e+00 811.0
16 TraesCS7B01G203800 chr7D 98.043 460 9 0 6601 7060 405115792 405116251 0.000000e+00 800.0
17 TraesCS7B01G203800 chr7D 93.220 354 12 6 3683 4024 404244963 404245316 2.000000e-140 510.0
18 TraesCS7B01G203800 chr7D 92.491 293 12 5 7061 7351 405116295 405116579 2.090000e-110 411.0
19 TraesCS7B01G203800 chr7D 92.466 292 13 3 7061 7351 404248412 404248695 7.520000e-110 409.0
20 TraesCS7B01G203800 chr7D 95.565 248 9 2 5343 5589 405114451 405114697 5.850000e-106 396.0
21 TraesCS7B01G203800 chr7D 90.780 282 16 8 620 900 405688732 405689004 1.280000e-97 368.0
22 TraesCS7B01G203800 chr7D 79.428 559 59 33 7517 8043 84231973 84231439 2.150000e-90 344.0
23 TraesCS7B01G203800 chr7D 93.671 158 10 0 896 1053 405690613 405690770 3.750000e-58 237.0
24 TraesCS7B01G203800 chr7D 89.362 141 15 0 1408 1548 236843867 236843727 2.310000e-40 178.0
25 TraesCS7B01G203800 chr7D 75.841 327 61 17 4945 5258 627213796 627213475 5.030000e-32 150.0
26 TraesCS7B01G203800 chr7D 94.737 95 5 0 3269 3363 236840466 236840372 1.810000e-31 148.0
27 TraesCS7B01G203800 chr2D 86.784 1589 120 37 2846 4365 200254856 200253289 0.000000e+00 1688.0
28 TraesCS7B01G203800 chr2D 93.633 1068 55 8 1779 2844 200255976 200254920 0.000000e+00 1583.0
29 TraesCS7B01G203800 chr2D 93.209 589 34 3 916 1502 200259088 200258504 0.000000e+00 861.0
30 TraesCS7B01G203800 chr2D 89.460 389 36 2 6220 6605 200253296 200252910 3.380000e-133 486.0
31 TraesCS7B01G203800 chr2D 91.818 220 12 4 6615 6828 200252763 200252544 1.310000e-77 302.0
32 TraesCS7B01G203800 chr2D 91.866 209 9 1 1499 1707 200256171 200255971 1.320000e-72 285.0
33 TraesCS7B01G203800 chr2D 90.850 153 13 1 2842 2994 268894317 268894468 3.810000e-48 204.0
34 TraesCS7B01G203800 chr2D 90.541 148 13 1 2842 2989 512768280 512768134 2.290000e-45 195.0
35 TraesCS7B01G203800 chr2B 93.820 1068 52 9 1779 2844 376497312 376498367 0.000000e+00 1594.0
36 TraesCS7B01G203800 chr2B 84.424 1207 109 33 2846 3997 376498431 376499613 0.000000e+00 1114.0
37 TraesCS7B01G203800 chr2B 99.184 490 2 1 89 578 57161436 57161923 0.000000e+00 881.0
38 TraesCS7B01G203800 chr2B 92.990 485 31 2 916 1398 376496278 376496761 0.000000e+00 704.0
39 TraesCS7B01G203800 chr2B 89.251 521 39 12 7530 8043 406454445 406454955 3.170000e-178 636.0
40 TraesCS7B01G203800 chr2B 94.485 272 12 3 1396 1667 376497022 376497290 4.490000e-112 416.0
41 TraesCS7B01G203800 chr2B 94.253 87 5 0 1 87 122390859 122390945 5.070000e-27 134.0
42 TraesCS7B01G203800 chr2A 92.750 800 50 4 916 1707 221085285 221084486 0.000000e+00 1149.0
43 TraesCS7B01G203800 chr2A 85.614 994 80 35 3427 4365 221079198 221078213 0.000000e+00 985.0
44 TraesCS7B01G203800 chr2A 94.815 540 25 3 2306 2842 221083629 221083090 0.000000e+00 839.0
45 TraesCS7B01G203800 chr2A 91.791 536 29 9 1779 2313 221084491 221083970 0.000000e+00 732.0
46 TraesCS7B01G203800 chr2A 91.192 386 20 6 3020 3391 221079590 221079205 5.570000e-141 512.0
47 TraesCS7B01G203800 chr2A 89.974 389 36 1 6220 6605 221078212 221077824 4.340000e-137 499.0
48 TraesCS7B01G203800 chr2A 91.244 217 16 2 6615 6828 221077664 221077448 7.900000e-75 292.0
49 TraesCS7B01G203800 chr2A 90.260 154 13 2 2842 2995 317953313 317953162 4.920000e-47 200.0
50 TraesCS7B01G203800 chr7A 98.649 518 7 0 61 578 95907756 95907239 0.000000e+00 918.0
51 TraesCS7B01G203800 chr7A 96.964 494 9 2 89 582 56202309 56202796 0.000000e+00 824.0
52 TraesCS7B01G203800 chr7A 89.677 155 12 3 2842 2996 503442341 503442491 2.290000e-45 195.0
53 TraesCS7B01G203800 chr7A 89.474 95 10 0 3269 3363 252197810 252197716 3.940000e-23 121.0
54 TraesCS7B01G203800 chr1A 98.776 490 4 2 89 578 58297435 58297922 0.000000e+00 870.0
55 TraesCS7B01G203800 chr4B 94.221 571 27 6 1 570 173329845 173329280 0.000000e+00 867.0
56 TraesCS7B01G203800 chr4B 84.043 188 20 8 4669 4853 441164968 441164788 1.070000e-38 172.0
57 TraesCS7B01G203800 chr4B 83.212 137 20 2 4871 5006 672447124 672447258 1.100000e-23 122.0
58 TraesCS7B01G203800 chr4B 85.321 109 15 1 4871 4978 672342710 672342818 2.370000e-20 111.0
59 TraesCS7B01G203800 chr4B 79.355 155 25 7 4891 5041 135074402 135074251 1.430000e-17 102.0
60 TraesCS7B01G203800 chr4B 81.188 101 12 5 4682 4782 113540209 113540116 3.110000e-09 75.0
61 TraesCS7B01G203800 chr6B 97.551 490 10 2 89 578 168768998 168768511 0.000000e+00 837.0
62 TraesCS7B01G203800 chr6B 95.030 503 6 8 89 590 159796618 159796134 0.000000e+00 773.0
63 TraesCS7B01G203800 chr6B 83.654 104 13 4 5837 5937 302676608 302676710 2.390000e-15 95.3
64 TraesCS7B01G203800 chr5B 98.329 419 6 1 164 582 686447533 686447116 0.000000e+00 734.0
65 TraesCS7B01G203800 chr5B 78.000 800 117 37 4720 5493 71516642 71517408 1.590000e-121 448.0
66 TraesCS7B01G203800 chr5B 78.129 791 112 32 4728 5493 71345875 71346629 5.730000e-121 446.0
67 TraesCS7B01G203800 chr3B 87.500 576 48 15 7478 8041 29420522 29421085 1.890000e-180 643.0
68 TraesCS7B01G203800 chr3B 88.224 535 47 10 7519 8045 527144535 527144009 6.850000e-175 625.0
69 TraesCS7B01G203800 chr3B 87.805 533 48 13 7513 8040 207060001 207060521 6.900000e-170 608.0
70 TraesCS7B01G203800 chr3B 90.909 132 12 0 2670 2801 173119123 173118992 2.310000e-40 178.0
71 TraesCS7B01G203800 chr3B 85.542 166 23 1 1408 1572 173120553 173120388 1.070000e-38 172.0
72 TraesCS7B01G203800 chr3B 87.705 122 14 1 7354 7474 29420362 29420483 3.030000e-29 141.0
73 TraesCS7B01G203800 chr1B 88.180 533 47 11 7516 8043 344312764 344313285 8.870000e-174 621.0
74 TraesCS7B01G203800 chr1B 77.500 560 70 37 7517 8043 487389063 487389599 1.320000e-72 285.0
75 TraesCS7B01G203800 chr1B 82.000 150 17 9 5629 5770 595437705 595437558 1.420000e-22 119.0
76 TraesCS7B01G203800 chr5D 87.079 534 49 14 7519 8043 217445145 217444623 3.230000e-163 586.0
77 TraesCS7B01G203800 chr5D 84.972 539 44 19 7517 8043 362586917 362587430 5.570000e-141 512.0
78 TraesCS7B01G203800 chr5D 89.873 158 14 2 2842 2999 299073559 299073404 1.370000e-47 202.0
79 TraesCS7B01G203800 chr5D 85.714 189 20 7 5801 5984 516823178 516822992 8.240000e-45 193.0
80 TraesCS7B01G203800 chr5D 79.263 217 37 6 5810 6024 337139465 337139255 2.340000e-30 145.0
81 TraesCS7B01G203800 chr5D 85.714 70 8 1 5080 5147 327616050 327616119 1.120000e-08 73.1
82 TraesCS7B01G203800 chr1D 85.038 528 53 20 7530 8043 361800006 361799491 1.550000e-141 514.0
83 TraesCS7B01G203800 chr1D 87.961 407 39 10 7641 8043 367670765 367670365 9.450000e-129 472.0
84 TraesCS7B01G203800 chr6D 82.471 348 38 15 4891 5219 455967696 455967353 4.750000e-72 283.0
85 TraesCS7B01G203800 chr6D 80.447 179 25 10 4891 5063 99238924 99238750 2.360000e-25 128.0
86 TraesCS7B01G203800 chr6D 80.247 162 24 5 5071 5226 454220298 454220139 1.830000e-21 115.0
87 TraesCS7B01G203800 chr4A 91.503 153 10 3 2842 2994 80843735 80843884 2.940000e-49 207.0
88 TraesCS7B01G203800 chr6A 89.172 157 12 5 2842 2997 570366061 570365909 2.960000e-44 191.0
89 TraesCS7B01G203800 chr4D 88.125 160 16 3 2842 3001 12445301 12445145 3.830000e-43 187.0
90 TraesCS7B01G203800 chr3A 88.652 141 16 0 1408 1548 127977563 127977423 1.070000e-38 172.0
91 TraesCS7B01G203800 chr3A 76.136 264 49 11 4884 5136 721245261 721245521 8.480000e-25 126.0
92 TraesCS7B01G203800 chr5A 78.995 219 37 6 5807 6024 438264050 438263840 3.030000e-29 141.0
93 TraesCS7B01G203800 chr5A 82.482 137 21 2 4871 5006 707703592 707703458 5.100000e-22 117.0
94 TraesCS7B01G203800 chr5A 74.296 284 55 15 4885 5156 689892997 689893274 3.970000e-18 104.0
95 TraesCS7B01G203800 chr5A 85.714 63 8 1 5959 6021 662329384 662329445 1.870000e-06 65.8
96 TraesCS7B01G203800 chr3D 74.662 296 49 21 4942 5219 11338341 11338054 3.070000e-19 108.0
97 TraesCS7B01G203800 chr3D 80.137 146 15 10 5085 5226 313822203 313822338 6.650000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G203800 chr7B 373781108 373789152 8044 False 14857.000000 14857 100.000000 1 8045 1 chr7B.!!$F2 8044
1 TraesCS7B01G203800 chr7B 10176320 10176837 517 False 680.000000 680 90.299000 7513 8043 1 chr7B.!!$F1 530
2 TraesCS7B01G203800 chr7D 405106753 405107948 1195 False 2047.000000 2047 97.577000 715 1909 1 chr7D.!!$F1 1194
3 TraesCS7B01G203800 chr7D 404241302 404248695 7393 False 1160.222222 2327 95.281889 409 7351 9 chr7D.!!$F2 6942
4 TraesCS7B01G203800 chr7D 405112513 405116579 4066 False 917.333333 1613 95.348667 3907 7351 6 chr7D.!!$F3 3444
5 TraesCS7B01G203800 chr7D 84231439 84231973 534 True 344.000000 344 79.428000 7517 8043 1 chr7D.!!$R1 526
6 TraesCS7B01G203800 chr7D 405688732 405690770 2038 False 302.500000 368 92.225500 620 1053 2 chr7D.!!$F4 433
7 TraesCS7B01G203800 chr2D 200252544 200259088 6544 True 867.500000 1688 91.128333 916 6828 6 chr2D.!!$R2 5912
8 TraesCS7B01G203800 chr2B 376496278 376499613 3335 False 957.000000 1594 91.429750 916 3997 4 chr2B.!!$F4 3081
9 TraesCS7B01G203800 chr2B 406454445 406454955 510 False 636.000000 636 89.251000 7530 8043 1 chr2B.!!$F3 513
10 TraesCS7B01G203800 chr2A 221077448 221085285 7837 True 715.428571 1149 91.054286 916 6828 7 chr2A.!!$R2 5912
11 TraesCS7B01G203800 chr7A 95907239 95907756 517 True 918.000000 918 98.649000 61 578 1 chr7A.!!$R1 517
12 TraesCS7B01G203800 chr4B 173329280 173329845 565 True 867.000000 867 94.221000 1 570 1 chr4B.!!$R3 569
13 TraesCS7B01G203800 chr5B 71516642 71517408 766 False 448.000000 448 78.000000 4720 5493 1 chr5B.!!$F2 773
14 TraesCS7B01G203800 chr5B 71345875 71346629 754 False 446.000000 446 78.129000 4728 5493 1 chr5B.!!$F1 765
15 TraesCS7B01G203800 chr3B 527144009 527144535 526 True 625.000000 625 88.224000 7519 8045 1 chr3B.!!$R1 526
16 TraesCS7B01G203800 chr3B 207060001 207060521 520 False 608.000000 608 87.805000 7513 8040 1 chr3B.!!$F1 527
17 TraesCS7B01G203800 chr3B 29420362 29421085 723 False 392.000000 643 87.602500 7354 8041 2 chr3B.!!$F2 687
18 TraesCS7B01G203800 chr1B 344312764 344313285 521 False 621.000000 621 88.180000 7516 8043 1 chr1B.!!$F1 527
19 TraesCS7B01G203800 chr1B 487389063 487389599 536 False 285.000000 285 77.500000 7517 8043 1 chr1B.!!$F2 526
20 TraesCS7B01G203800 chr5D 217444623 217445145 522 True 586.000000 586 87.079000 7519 8043 1 chr5D.!!$R1 524
21 TraesCS7B01G203800 chr5D 362586917 362587430 513 False 512.000000 512 84.972000 7517 8043 1 chr5D.!!$F2 526
22 TraesCS7B01G203800 chr1D 361799491 361800006 515 True 514.000000 514 85.038000 7530 8043 1 chr1D.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 421 0.958876 GGACCGCGGGTTGAATTCTT 60.959 55.000 31.76 3.06 35.25 2.52 F
1151 2771 1.867919 CTATCCGCCGCCTTCTCGAT 61.868 60.000 0.00 0.00 0.00 3.59 F
1902 6130 5.643777 GCTACTTAAGTGAAATTGCCTGAGA 59.356 40.000 18.56 0.00 0.00 3.27 F
2937 7710 1.774856 AGGCTGTGTACAAAAGACCCT 59.225 47.619 8.69 5.06 0.00 4.34 F
3623 11687 1.200020 GCACTCAATTTTCCCCACTCG 59.800 52.381 0.00 0.00 0.00 4.18 F
5525 14522 0.108804 GTTCGCTCGATGAACCCTCA 60.109 55.000 15.99 0.00 39.80 3.86 F
6206 15234 0.602638 ATCGTTCTTTCGGCACTGCA 60.603 50.000 2.82 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 6218 1.496001 TCTACCCCTCAGCCGTATGTA 59.504 52.381 0.00 0.00 0.00 2.29 R
2937 7710 1.534476 TGCAGGGTCCGACCACTTA 60.534 57.895 19.43 0.10 41.02 2.24 R
3205 11256 0.742505 TGCCAGCAAGATAAGCATGC 59.257 50.000 10.51 10.51 41.35 4.06 R
4429 12902 1.314534 CCTTGCGCCAACATCCATGA 61.315 55.000 4.18 0.00 0.00 3.07 R
5560 14557 0.457443 TCCAGCGTACATCAGCTCTG 59.543 55.000 0.00 0.00 42.52 3.35 R
6981 16196 0.104304 TATCGGCTTTCGGCTCCTTC 59.896 55.000 0.00 0.00 41.46 3.46 R
7548 16851 0.035439 TTCGTGGGGAAGAAGATGGC 60.035 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.268920 GGCGAGGTGAATCAGGCA 59.731 61.111 0.00 0.00 0.00 4.75
420 421 0.958876 GGACCGCGGGTTGAATTCTT 60.959 55.000 31.76 3.06 35.25 2.52
578 584 7.924541 TCCTTGCTTTATTAGTAGGGAAAGAA 58.075 34.615 0.00 0.00 40.87 2.52
592 598 8.983789 AGTAGGGAAAGAAATAAAGGTAGAGAG 58.016 37.037 0.00 0.00 0.00 3.20
595 601 8.983789 AGGGAAAGAAATAAAGGTAGAGAGTAG 58.016 37.037 0.00 0.00 0.00 2.57
980 2600 1.935300 GCACAGATCTCGGTGAACGTT 60.935 52.381 15.47 0.00 43.22 3.99
1151 2771 1.867919 CTATCCGCCGCCTTCTCGAT 61.868 60.000 0.00 0.00 0.00 3.59
1388 3010 8.946085 ACGTTGTGTTCAATATCTTATGTGATT 58.054 29.630 0.00 0.00 35.92 2.57
1902 6130 5.643777 GCTACTTAAGTGAAATTGCCTGAGA 59.356 40.000 18.56 0.00 0.00 3.27
1960 6188 5.940192 TGCAGTTTTTCGTTAGACATGAT 57.060 34.783 0.00 0.00 0.00 2.45
2530 7236 9.145865 CTCTGTCCTTGTCTTTAAGTAAGATTC 57.854 37.037 11.20 4.77 44.39 2.52
2644 7352 8.885722 TCGTACTTGTTAAAAGAATTGTTCTGT 58.114 29.630 0.00 0.00 40.59 3.41
2655 7363 9.586435 AAAAGAATTGTTCTGTAAAGGTTTGAG 57.414 29.630 0.00 0.00 40.59 3.02
2937 7710 1.774856 AGGCTGTGTACAAAAGACCCT 59.225 47.619 8.69 5.06 0.00 4.34
3205 11256 8.225603 AGCATTGGTATATTTGTAGTTGGAAG 57.774 34.615 0.00 0.00 0.00 3.46
3454 11506 6.169094 CCTGCTGTATTGATATCTAACTGGG 58.831 44.000 3.98 0.00 0.00 4.45
3618 11680 2.566724 TCCATTGCACTCAATTTTCCCC 59.433 45.455 0.00 0.00 40.74 4.81
3619 11681 2.302445 CCATTGCACTCAATTTTCCCCA 59.698 45.455 0.00 0.00 40.74 4.96
3623 11687 1.200020 GCACTCAATTTTCCCCACTCG 59.800 52.381 0.00 0.00 0.00 4.18
3624 11688 1.200020 CACTCAATTTTCCCCACTCGC 59.800 52.381 0.00 0.00 0.00 5.03
3629 11693 1.995376 ATTTTCCCCACTCGCTTGTT 58.005 45.000 0.00 0.00 0.00 2.83
3637 11701 1.338674 CCACTCGCTTGTTGGGTCATA 60.339 52.381 0.00 0.00 0.00 2.15
3649 11713 7.309194 GCTTGTTGGGTCATATTTTAGTCAACT 60.309 37.037 0.00 0.00 35.61 3.16
3779 12051 8.795842 TGTAAAACTTAACTTCTTTGAGGTGA 57.204 30.769 0.00 0.00 0.00 4.02
3792 12064 3.380479 TGAGGTGACTTTGTAGTTCCG 57.620 47.619 0.00 0.00 44.43 4.30
3798 12070 3.864003 GTGACTTTGTAGTTCCGCCTATC 59.136 47.826 0.00 0.00 33.84 2.08
4263 12735 5.375417 TTGATGTTTCGCAATCTGTTGAT 57.625 34.783 0.00 0.00 37.53 2.57
4389 12862 3.569250 AATGCTATTTGGCGAACGTTT 57.431 38.095 0.46 0.00 34.52 3.60
4459 12932 2.844451 GCGCAAGGCCAACTTCACA 61.844 57.895 5.01 0.00 37.29 3.58
4478 12951 2.100584 ACATCAGCTCTCTGGAATCGTC 59.899 50.000 0.00 0.00 40.69 4.20
4479 12952 1.107114 TCAGCTCTCTGGAATCGTCC 58.893 55.000 0.00 0.00 45.21 4.79
4510 12983 2.521958 ATCCCTGGCGAACGTTCCTG 62.522 60.000 22.07 13.30 0.00 3.86
4592 13065 3.374764 TCCAGCAGGAGTATTAAGCTCA 58.625 45.455 0.00 0.00 39.61 4.26
4593 13066 3.774766 TCCAGCAGGAGTATTAAGCTCAA 59.225 43.478 0.00 0.00 39.61 3.02
4594 13067 4.225042 TCCAGCAGGAGTATTAAGCTCAAA 59.775 41.667 0.00 0.00 39.61 2.69
4596 13069 5.181748 CAGCAGGAGTATTAAGCTCAAACT 58.818 41.667 10.69 0.00 34.83 2.66
4597 13070 5.645497 CAGCAGGAGTATTAAGCTCAAACTT 59.355 40.000 10.69 0.00 34.83 2.66
4598 13071 6.818644 CAGCAGGAGTATTAAGCTCAAACTTA 59.181 38.462 10.69 0.00 34.83 2.24
4599 13072 6.819146 AGCAGGAGTATTAAGCTCAAACTTAC 59.181 38.462 10.69 0.00 34.83 2.34
4966 13493 8.391106 GTGACAGTTTTATTACTAAGAGCATGG 58.609 37.037 0.00 0.00 0.00 3.66
4982 13509 8.827177 AAGAGCATGGCATTTTATTATCAATG 57.173 30.769 0.00 0.00 34.09 2.82
5395 14389 1.539827 GGGCATAGCGAAAACTGTGTT 59.460 47.619 0.00 0.00 31.90 3.32
5396 14390 2.030274 GGGCATAGCGAAAACTGTGTTT 60.030 45.455 0.00 0.00 31.90 2.83
5486 14483 0.727398 GCAAGCCCATACGAGTGAAC 59.273 55.000 0.00 0.00 0.00 3.18
5525 14522 0.108804 GTTCGCTCGATGAACCCTCA 60.109 55.000 15.99 0.00 39.80 3.86
5539 14536 2.106683 CCTCATGGGGCGAACGAAC 61.107 63.158 0.00 0.00 0.00 3.95
5540 14537 1.375396 CTCATGGGGCGAACGAACA 60.375 57.895 0.00 0.00 0.00 3.18
5589 14586 5.326900 TGATGTACGCTGGATATTAGGGTA 58.673 41.667 11.38 11.38 41.01 3.69
5590 14587 5.955959 TGATGTACGCTGGATATTAGGGTAT 59.044 40.000 15.81 6.94 42.84 2.73
5591 14588 7.120716 TGATGTACGCTGGATATTAGGGTATA 58.879 38.462 15.81 14.34 42.84 1.47
5593 14590 6.724351 TGTACGCTGGATATTAGGGTATAGA 58.276 40.000 15.81 6.09 42.84 1.98
5595 14592 7.837689 TGTACGCTGGATATTAGGGTATAGAAT 59.162 37.037 15.81 0.00 42.84 2.40
5596 14593 9.347240 GTACGCTGGATATTAGGGTATAGAATA 57.653 37.037 15.81 0.00 42.84 1.75
5598 14595 8.861086 ACGCTGGATATTAGGGTATAGAATATG 58.139 37.037 8.31 0.00 39.23 1.78
5601 14598 9.676129 CTGGATATTAGGGTATAGAATATGGGT 57.324 37.037 0.00 0.00 0.00 4.51
5727 14754 6.524734 TCATATAGTCTCACGGCAATTTCAT 58.475 36.000 0.00 0.00 0.00 2.57
5729 14756 8.147704 TCATATAGTCTCACGGCAATTTCATAA 58.852 33.333 0.00 0.00 0.00 1.90
5776 14803 4.448537 TTTTTGCAACTTACTGTGCACT 57.551 36.364 19.41 0.28 34.32 4.40
5958 14985 3.075432 ACCCCCATACAACTAAAACTGCT 59.925 43.478 0.00 0.00 0.00 4.24
6007 15034 1.576421 CAGCGGAAGTTTGACAGCC 59.424 57.895 0.00 0.00 0.00 4.85
6050 15077 8.174422 GCATGGCAAATTTATTTACGACATTTT 58.826 29.630 0.00 0.00 0.00 1.82
6107 15135 9.210329 TCTTTCTGCACGTTTCATAATTTACTA 57.790 29.630 0.00 0.00 0.00 1.82
6161 15189 1.443702 GAAAACGCATGGGTTCGCC 60.444 57.895 26.19 15.06 0.00 5.54
6206 15234 0.602638 ATCGTTCTTTCGGCACTGCA 60.603 50.000 2.82 0.00 0.00 4.41
6212 15240 2.710377 TCTTTCGGCACTGCATTATGT 58.290 42.857 2.82 0.00 0.00 2.29
6233 15261 7.582667 ATGTGGGTCCTAATAAATTGCTAAC 57.417 36.000 0.00 0.00 0.00 2.34
6269 15297 4.936891 ACATTTTGTGCAGGACTTCTTTC 58.063 39.130 0.00 0.00 0.00 2.62
6362 15390 8.903570 GGATGACGATGTAGATGATTACTTAG 57.096 38.462 0.00 0.00 0.00 2.18
6363 15391 8.731605 GGATGACGATGTAGATGATTACTTAGA 58.268 37.037 0.00 0.00 0.00 2.10
6368 15396 9.751542 ACGATGTAGATGATTACTTAGAAAAGG 57.248 33.333 0.00 0.00 37.01 3.11
6369 15397 9.751542 CGATGTAGATGATTACTTAGAAAAGGT 57.248 33.333 0.00 0.00 37.01 3.50
6396 15449 8.365060 TGTTGAATGGAGATAAATTGGTGATT 57.635 30.769 0.00 0.00 0.00 2.57
6606 15718 3.557228 AAGCAGGAGATCTTGATGGAC 57.443 47.619 0.00 0.00 0.00 4.02
6715 15924 0.887933 AATGTTGCAACGACCATCCC 59.112 50.000 23.79 0.00 0.00 3.85
6981 16196 3.615099 GAGAGAAGCTCGGAAGACG 57.385 57.895 0.00 0.00 46.11 4.18
6993 16208 0.037605 GGAAGACGAAGGAGCCGAAA 60.038 55.000 0.00 0.00 0.00 3.46
7102 16360 9.302345 CTGTATGATTGAGTGTTTATAACGAGT 57.698 33.333 0.00 0.00 0.00 4.18
7118 16376 1.405821 CGAGTAAGGACGATGCTTCCT 59.594 52.381 0.00 0.00 46.13 3.36
7220 16478 3.157881 TGAAGTGCAGTAGTGTCTAGCT 58.842 45.455 0.00 0.00 0.00 3.32
7244 16502 3.320541 CCTTGTAAATGGTGCCTTGTCAA 59.679 43.478 0.00 0.00 0.00 3.18
7245 16503 4.021192 CCTTGTAAATGGTGCCTTGTCAAT 60.021 41.667 0.00 0.00 0.00 2.57
7246 16504 5.511202 CCTTGTAAATGGTGCCTTGTCAATT 60.511 40.000 0.00 0.00 0.00 2.32
7247 16505 4.880759 TGTAAATGGTGCCTTGTCAATTG 58.119 39.130 0.00 0.00 0.00 2.32
7248 16506 4.343526 TGTAAATGGTGCCTTGTCAATTGT 59.656 37.500 5.13 0.00 0.00 2.71
7249 16507 3.665745 AATGGTGCCTTGTCAATTGTC 57.334 42.857 5.13 0.00 0.00 3.18
7250 16508 2.064434 TGGTGCCTTGTCAATTGTCA 57.936 45.000 5.13 2.96 0.00 3.58
7314 16572 5.860716 GCCAGCTAAGAAAAGTTTCTCAATG 59.139 40.000 6.76 4.63 46.22 2.82
7323 16581 1.884579 AGTTTCTCAATGCTGCACAGG 59.115 47.619 3.57 0.00 0.00 4.00
7369 16629 2.519771 TATGGACGTGTCTAGGTGGT 57.480 50.000 0.00 0.00 0.00 4.16
7375 16635 2.118732 TGTCTAGGTGGTGCCCGA 59.881 61.111 0.00 0.00 38.26 5.14
7377 16637 2.682494 TCTAGGTGGTGCCCGACC 60.682 66.667 0.00 0.00 46.37 4.79
7422 16683 3.572642 CCACCCAAAAAGGAAACTACCT 58.427 45.455 0.00 0.00 42.68 3.08
7426 16687 4.168479 ACCCAAAAAGGAAACTACCTGGTA 59.832 41.667 6.36 6.36 42.68 3.25
7432 16693 1.560505 GAAACTACCTGGTACCCCGA 58.439 55.000 10.07 0.00 0.00 5.14
7434 16695 0.411058 AACTACCTGGTACCCCGACT 59.589 55.000 10.07 0.00 0.00 4.18
7479 16775 4.430423 CGCGCTCGAAACTGCACC 62.430 66.667 5.56 0.00 38.10 5.01
7488 16784 1.726853 GAAACTGCACCACTAGCGAT 58.273 50.000 0.00 0.00 33.85 4.58
7494 16790 0.108615 GCACCACTAGCGATGACAGT 60.109 55.000 0.00 0.00 0.00 3.55
7502 16798 3.499737 CGATGACAGTTGGCCGCC 61.500 66.667 1.04 1.04 0.00 6.13
7503 16799 2.359850 GATGACAGTTGGCCGCCA 60.360 61.111 8.43 8.43 0.00 5.69
7504 16800 2.672996 ATGACAGTTGGCCGCCAC 60.673 61.111 13.00 7.74 30.78 5.01
7527 16828 0.391597 ATCACGTGACCGAAACCACT 59.608 50.000 22.71 0.00 37.88 4.00
7537 16838 2.158667 ACCGAAACCACTTGAGACCAAT 60.159 45.455 0.00 0.00 0.00 3.16
7546 16849 0.189574 TTGAGACCAATTGCCCCCAA 59.810 50.000 0.00 0.00 35.01 4.12
7548 16851 0.972471 GAGACCAATTGCCCCCAAGG 60.972 60.000 0.00 0.00 33.80 3.61
7593 16899 0.114954 ATCTGCTCAGGGGGCAAAAA 59.885 50.000 0.00 0.00 39.30 1.94
7595 16901 1.075674 TGCTCAGGGGGCAAAAACA 60.076 52.632 0.00 0.00 36.71 2.83
7627 16948 0.990374 AGAAGAACATGGCAGCTCCT 59.010 50.000 0.00 0.00 35.26 3.69
7638 16959 1.475930 GGCAGCTCCTAGGGACAAATC 60.476 57.143 9.46 0.00 0.00 2.17
7639 16960 1.808133 GCAGCTCCTAGGGACAAATCG 60.808 57.143 9.46 0.00 0.00 3.34
7640 16961 1.482593 CAGCTCCTAGGGACAAATCGT 59.517 52.381 9.46 0.00 0.00 3.73
7734 17061 6.380079 AAAAAGCAGATTAAGAGAGGAGGA 57.620 37.500 0.00 0.00 0.00 3.71
7735 17062 6.380079 AAAAGCAGATTAAGAGAGGAGGAA 57.620 37.500 0.00 0.00 0.00 3.36
7736 17063 5.351948 AAGCAGATTAAGAGAGGAGGAAC 57.648 43.478 0.00 0.00 0.00 3.62
7737 17064 4.357325 AGCAGATTAAGAGAGGAGGAACA 58.643 43.478 0.00 0.00 0.00 3.18
7738 17065 4.780021 AGCAGATTAAGAGAGGAGGAACAA 59.220 41.667 0.00 0.00 0.00 2.83
7739 17066 5.249393 AGCAGATTAAGAGAGGAGGAACAAA 59.751 40.000 0.00 0.00 0.00 2.83
7740 17067 5.940470 GCAGATTAAGAGAGGAGGAACAAAA 59.060 40.000 0.00 0.00 0.00 2.44
7741 17068 6.431234 GCAGATTAAGAGAGGAGGAACAAAAA 59.569 38.462 0.00 0.00 0.00 1.94
7742 17069 7.361628 GCAGATTAAGAGAGGAGGAACAAAAAG 60.362 40.741 0.00 0.00 0.00 2.27
7813 17165 2.354805 CCTGTAGACTTGCCCTTGTACC 60.355 54.545 0.00 0.00 0.00 3.34
7909 17274 4.039245 CAGAGAAACTGTCCAACCAGTAGA 59.961 45.833 0.00 0.00 44.74 2.59
7911 17276 5.046950 AGAGAAACTGTCCAACCAGTAGATC 60.047 44.000 0.00 0.00 44.74 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
420 421 3.447944 ACAAAAAGAACCCTGCCGTTTTA 59.552 39.130 0.00 0.00 0.00 1.52
673 679 8.980610 GGCCCGCGTTTATTTTATTTATTTTAT 58.019 29.630 4.92 0.00 0.00 1.40
674 680 8.196103 AGGCCCGCGTTTATTTTATTTATTTTA 58.804 29.630 4.92 0.00 0.00 1.52
675 681 7.010645 CAGGCCCGCGTTTATTTTATTTATTTT 59.989 33.333 4.92 0.00 0.00 1.82
676 682 6.477360 CAGGCCCGCGTTTATTTTATTTATTT 59.523 34.615 4.92 0.00 0.00 1.40
677 683 5.980715 CAGGCCCGCGTTTATTTTATTTATT 59.019 36.000 4.92 0.00 0.00 1.40
705 711 2.281208 TGGCTAAACGCACGCCTT 60.281 55.556 0.00 0.00 44.09 4.35
837 844 0.952984 GTTGCCTTCTCTTGCTCGCT 60.953 55.000 0.00 0.00 0.00 4.93
959 2579 0.388520 CGTTCACCGAGATCTGTGCA 60.389 55.000 0.00 0.00 39.56 4.57
980 2600 1.539827 TCTTCGACGACAGAATGCTCA 59.460 47.619 0.00 0.00 42.53 4.26
1338 2960 7.254556 CGTACCATAACACGAGACTGTAGATAA 60.255 40.741 0.00 0.00 40.56 1.75
1981 6210 3.938963 CCTCAGCCGTATGTACACAAAAT 59.061 43.478 0.00 0.00 0.00 1.82
1988 6217 1.612463 CTACCCCTCAGCCGTATGTAC 59.388 57.143 0.00 0.00 0.00 2.90
1989 6218 1.496001 TCTACCCCTCAGCCGTATGTA 59.504 52.381 0.00 0.00 0.00 2.29
2194 6550 5.385198 ACCTCTTTTCCTGTAGAAATGCAA 58.615 37.500 0.00 0.00 43.93 4.08
2362 7067 5.564550 ACAGATAACTGAAACCAGCAGATT 58.435 37.500 7.05 0.00 46.03 2.40
2530 7236 5.971202 AGCAACAAACAAGTGTAAAGAATCG 59.029 36.000 0.00 0.00 0.00 3.34
2655 7363 5.132897 TCCCTGCAATAAACAAATGTCAC 57.867 39.130 0.00 0.00 0.00 3.67
2844 7554 2.638480 AGTCACAAGGCAACAGCTTA 57.362 45.000 0.00 0.00 41.41 3.09
2937 7710 1.534476 TGCAGGGTCCGACCACTTA 60.534 57.895 19.43 0.10 41.02 2.24
3008 7795 4.780021 AGGAGAACAAGAGATTAAGGAGCA 59.220 41.667 0.00 0.00 0.00 4.26
3205 11256 0.742505 TGCCAGCAAGATAAGCATGC 59.257 50.000 10.51 10.51 41.35 4.06
3454 11506 2.940410 TCGAGTTCCAACTTTGAACCAC 59.060 45.455 2.80 0.00 39.88 4.16
3598 11660 2.302445 TGGGGAAAATTGAGTGCAATGG 59.698 45.455 0.00 0.00 43.71 3.16
3618 11680 2.093306 TATGACCCAACAAGCGAGTG 57.907 50.000 0.00 0.00 0.00 3.51
3619 11681 3.350219 AATATGACCCAACAAGCGAGT 57.650 42.857 0.00 0.00 0.00 4.18
3623 11687 6.509418 TGACTAAAATATGACCCAACAAGC 57.491 37.500 0.00 0.00 0.00 4.01
3624 11688 8.110860 AGTTGACTAAAATATGACCCAACAAG 57.889 34.615 0.00 0.00 36.18 3.16
3629 11693 8.158132 TGTTGTAGTTGACTAAAATATGACCCA 58.842 33.333 0.00 0.00 29.21 4.51
3637 11701 7.582667 AGGCTTTGTTGTAGTTGACTAAAAT 57.417 32.000 0.00 0.00 29.21 1.82
3762 12034 8.044908 ACTACAAAGTCACCTCAAAGAAGTTAA 58.955 33.333 0.00 0.00 0.00 2.01
3779 12051 4.755266 ATGATAGGCGGAACTACAAAGT 57.245 40.909 0.00 0.00 37.65 2.66
3792 12064 9.846248 GAAATGTAAATGACCATTATGATAGGC 57.154 33.333 0.00 0.00 31.30 3.93
3798 12070 9.304731 CTTGTGGAAATGTAAATGACCATTATG 57.695 33.333 0.00 0.00 31.30 1.90
4165 12637 8.704849 TCTGGAACAATGGTAATATTAATGGG 57.295 34.615 0.00 0.00 38.70 4.00
4174 12646 6.994421 AAGGTTTTCTGGAACAATGGTAAT 57.006 33.333 0.00 0.00 38.70 1.89
4389 12862 4.838307 AGGATTAGGCTCCTGGCA 57.162 55.556 0.00 0.00 44.18 4.92
4429 12902 1.314534 CCTTGCGCCAACATCCATGA 61.315 55.000 4.18 0.00 0.00 3.07
4455 12928 2.100418 CGATTCCAGAGAGCTGATGTGA 59.900 50.000 0.00 0.00 45.17 3.58
4459 12932 1.686052 GGACGATTCCAGAGAGCTGAT 59.314 52.381 0.00 0.00 45.17 2.90
4479 12952 1.811266 CAGGGATCCGTTCACAGCG 60.811 63.158 3.63 0.00 0.00 5.18
4593 13066 9.998106 ACAGTTCACTCAAATACATAGTAAGTT 57.002 29.630 0.00 0.00 0.00 2.66
4594 13067 9.998106 AACAGTTCACTCAAATACATAGTAAGT 57.002 29.630 0.00 0.00 0.00 2.24
4671 13191 7.071071 AGGGATTTTTGTTCTTTCAGAAATGGA 59.929 33.333 0.00 0.00 35.75 3.41
4732 13252 9.077885 CCTACCTATAATAAAAATGCACATGGT 57.922 33.333 0.00 0.00 0.00 3.55
5449 14446 1.818674 TGCTCAGCGACTAGTTGATCA 59.181 47.619 14.70 4.99 39.36 2.92
5525 14522 0.953960 GAACTGTTCGTTCGCCCCAT 60.954 55.000 4.57 0.00 42.28 4.00
5560 14557 0.457443 TCCAGCGTACATCAGCTCTG 59.543 55.000 0.00 0.00 42.52 3.35
5589 14586 9.857656 CATGGCAATTCTATACCCATATTCTAT 57.142 33.333 0.00 0.00 34.68 1.98
5590 14587 8.274322 CCATGGCAATTCTATACCCATATTCTA 58.726 37.037 0.00 0.00 34.68 2.10
5591 14588 7.121382 CCATGGCAATTCTATACCCATATTCT 58.879 38.462 0.00 0.00 34.68 2.40
5593 14590 6.197168 CCCATGGCAATTCTATACCCATATT 58.803 40.000 6.09 0.00 34.68 1.28
5595 14592 4.605813 ACCCATGGCAATTCTATACCCATA 59.394 41.667 6.09 0.00 34.68 2.74
5596 14593 3.402366 ACCCATGGCAATTCTATACCCAT 59.598 43.478 6.09 0.00 36.77 4.00
5597 14594 2.788807 ACCCATGGCAATTCTATACCCA 59.211 45.455 6.09 0.00 0.00 4.51
5598 14595 3.525800 ACCCATGGCAATTCTATACCC 57.474 47.619 6.09 0.00 0.00 3.69
5958 14985 5.106475 GGTGGCATTTGTGAACGTTTAGATA 60.106 40.000 0.46 0.00 0.00 1.98
5996 15023 0.846693 ACCCTCTTGGCTGTCAAACT 59.153 50.000 0.00 0.00 37.83 2.66
6007 15034 3.181497 CCATGCAAAATACGACCCTCTTG 60.181 47.826 0.00 0.00 0.00 3.02
6082 15110 9.478019 CTAGTAAATTATGAAACGTGCAGAAAG 57.522 33.333 3.35 0.00 0.00 2.62
6107 15135 2.856000 AGCAACCCCAGCTGGTCT 60.856 61.111 30.63 15.79 41.61 3.85
6184 15212 1.798223 CAGTGCCGAAAGAACGATTCA 59.202 47.619 0.00 0.00 35.09 2.57
6206 15234 9.875708 TTAGCAATTTATTAGGACCCACATAAT 57.124 29.630 0.00 0.00 38.66 1.28
6212 15240 7.054124 CAGAGTTAGCAATTTATTAGGACCCA 58.946 38.462 0.00 0.00 0.00 4.51
6233 15261 5.678483 GCACAAAATGTTGCGTATATCAGAG 59.322 40.000 0.00 0.00 38.39 3.35
6269 15297 0.597637 ACAGCGACACCTCGTTTCAG 60.598 55.000 0.00 0.00 42.33 3.02
6356 15384 9.667107 CTCCATTCAACATACCTTTTCTAAGTA 57.333 33.333 0.00 0.00 0.00 2.24
6357 15385 8.383175 TCTCCATTCAACATACCTTTTCTAAGT 58.617 33.333 0.00 0.00 0.00 2.24
6358 15386 8.792830 TCTCCATTCAACATACCTTTTCTAAG 57.207 34.615 0.00 0.00 0.00 2.18
6361 15389 9.753674 TTTATCTCCATTCAACATACCTTTTCT 57.246 29.630 0.00 0.00 0.00 2.52
6365 15393 8.917088 CCAATTTATCTCCATTCAACATACCTT 58.083 33.333 0.00 0.00 0.00 3.50
6366 15394 8.061304 ACCAATTTATCTCCATTCAACATACCT 58.939 33.333 0.00 0.00 0.00 3.08
6367 15395 8.137437 CACCAATTTATCTCCATTCAACATACC 58.863 37.037 0.00 0.00 0.00 2.73
6368 15396 8.902806 TCACCAATTTATCTCCATTCAACATAC 58.097 33.333 0.00 0.00 0.00 2.39
6369 15397 9.645128 ATCACCAATTTATCTCCATTCAACATA 57.355 29.630 0.00 0.00 0.00 2.29
6464 15520 6.481644 GTGTATCTCCATTCTCCAACATCTTC 59.518 42.308 0.00 0.00 0.00 2.87
6606 15718 9.010029 AGTGAATTATTGTTAAACCTGGTAGTG 57.990 33.333 0.00 0.00 0.00 2.74
6715 15924 1.291877 GCTGGTGGCTCGTAACACAG 61.292 60.000 0.00 0.00 39.31 3.66
6981 16196 0.104304 TATCGGCTTTCGGCTCCTTC 59.896 55.000 0.00 0.00 41.46 3.46
6993 16208 2.757894 TCCTCCTCTTCTTATCGGCT 57.242 50.000 0.00 0.00 0.00 5.52
7122 16380 5.220006 CCAATGACATTTGTTTGCGTTATCG 60.220 40.000 0.00 0.00 40.37 2.92
7126 16384 4.052159 TCCAATGACATTTGTTTGCGTT 57.948 36.364 0.00 0.00 0.00 4.84
7128 16386 4.925054 AGAATCCAATGACATTTGTTTGCG 59.075 37.500 0.00 0.00 0.00 4.85
7168 16426 5.107683 CGCAATTTAAAAAGCGGAATGAACA 60.108 36.000 22.43 0.00 45.83 3.18
7179 16437 2.412770 CAGGGCTGCGCAATTTAAAAAG 59.587 45.455 19.22 0.00 0.00 2.27
7204 16462 3.367646 AGGTAGCTAGACACTACTGCA 57.632 47.619 0.00 0.00 39.95 4.41
7220 16478 4.076394 GACAAGGCACCATTTACAAGGTA 58.924 43.478 0.00 0.00 36.07 3.08
7277 16535 0.381801 AGCTGGCAAGTCACAAAACG 59.618 50.000 0.00 0.00 0.00 3.60
7351 16611 0.895530 CACCACCTAGACACGTCCAT 59.104 55.000 0.00 0.00 0.00 3.41
7352 16612 1.812686 GCACCACCTAGACACGTCCA 61.813 60.000 0.00 0.00 0.00 4.02
7375 16635 1.306654 TTAGTGATCCCAGGGCGGT 60.307 57.895 0.00 0.00 0.00 5.68
7377 16637 1.146263 GGTTAGTGATCCCAGGGCG 59.854 63.158 0.00 0.00 0.00 6.13
7389 16650 4.029809 GGGTGGGCGCTGGTTAGT 62.030 66.667 7.64 0.00 0.00 2.24
7397 16658 2.034048 TTTCCTTTTTGGGTGGGCGC 62.034 55.000 0.00 0.00 36.20 6.53
7426 16687 0.180878 TTTTTCGGTTCAGTCGGGGT 59.819 50.000 0.00 0.00 0.00 4.95
7432 16693 2.304092 GGGTTCCTTTTTCGGTTCAGT 58.696 47.619 0.00 0.00 0.00 3.41
7434 16695 2.025898 GTGGGTTCCTTTTTCGGTTCA 58.974 47.619 0.00 0.00 0.00 3.18
7463 16724 3.345808 TGGTGCAGTTTCGAGCGC 61.346 61.111 0.00 0.00 40.36 5.92
7467 16728 0.666274 CGCTAGTGGTGCAGTTTCGA 60.666 55.000 0.00 0.00 0.00 3.71
7474 16735 0.108662 CTGTCATCGCTAGTGGTGCA 60.109 55.000 11.87 11.63 0.00 4.57
7479 16775 1.002366 GCCAACTGTCATCGCTAGTG 58.998 55.000 0.00 0.00 0.00 2.74
7503 16799 1.808531 TTTCGGTCACGTGATCCCGT 61.809 55.000 33.46 0.00 42.87 5.28
7504 16800 1.080366 TTTCGGTCACGTGATCCCG 60.080 57.895 31.16 31.16 41.85 5.14
7505 16801 1.017701 GGTTTCGGTCACGTGATCCC 61.018 60.000 23.12 17.84 41.85 3.85
7506 16802 0.320073 TGGTTTCGGTCACGTGATCC 60.320 55.000 23.12 21.58 41.85 3.36
7507 16803 0.788391 GTGGTTTCGGTCACGTGATC 59.212 55.000 23.12 21.04 41.85 2.92
7509 16805 0.176219 AAGTGGTTTCGGTCACGTGA 59.824 50.000 15.76 15.76 41.85 4.35
7510 16806 0.303493 CAAGTGGTTTCGGTCACGTG 59.697 55.000 9.94 9.94 41.85 4.49
7511 16807 0.176219 TCAAGTGGTTTCGGTCACGT 59.824 50.000 0.00 0.00 41.85 4.49
7512 16808 0.859232 CTCAAGTGGTTTCGGTCACG 59.141 55.000 0.00 0.00 38.77 4.35
7513 16809 1.865340 GTCTCAAGTGGTTTCGGTCAC 59.135 52.381 0.00 0.00 0.00 3.67
7514 16810 1.202604 GGTCTCAAGTGGTTTCGGTCA 60.203 52.381 0.00 0.00 0.00 4.02
7527 16828 0.189574 TTGGGGGCAATTGGTCTCAA 59.810 50.000 7.72 0.00 37.28 3.02
7546 16849 1.915078 CGTGGGGAAGAAGATGGCCT 61.915 60.000 3.32 0.00 0.00 5.19
7548 16851 0.035439 TTCGTGGGGAAGAAGATGGC 60.035 55.000 0.00 0.00 0.00 4.40
7550 16853 3.334583 TCTTTCGTGGGGAAGAAGATG 57.665 47.619 0.00 0.00 35.70 2.90
7551 16854 3.307762 CCTTCTTTCGTGGGGAAGAAGAT 60.308 47.826 21.02 0.00 39.56 2.40
7593 16899 1.833630 TCTTCTCCTGGCGATGAATGT 59.166 47.619 0.24 0.00 0.00 2.71
7595 16901 2.237143 TGTTCTTCTCCTGGCGATGAAT 59.763 45.455 15.36 0.00 30.52 2.57
7627 16948 6.185511 TCTCTTCTCTTACGATTTGTCCCTA 58.814 40.000 0.00 0.00 0.00 3.53
7638 16959 3.020984 AGCCCTCTTCTCTTCTCTTACG 58.979 50.000 0.00 0.00 0.00 3.18
7639 16960 5.889289 TCTAAGCCCTCTTCTCTTCTCTTAC 59.111 44.000 0.00 0.00 33.85 2.34
7640 16961 6.080969 TCTAAGCCCTCTTCTCTTCTCTTA 57.919 41.667 0.00 0.00 33.85 2.10
7717 17044 7.880195 TCTTTTTGTTCCTCCTCTCTTAATCTG 59.120 37.037 0.00 0.00 0.00 2.90
7718 17045 7.978925 TCTTTTTGTTCCTCCTCTCTTAATCT 58.021 34.615 0.00 0.00 0.00 2.40
7719 17046 8.097662 TCTCTTTTTGTTCCTCCTCTCTTAATC 58.902 37.037 0.00 0.00 0.00 1.75
7720 17047 7.978925 TCTCTTTTTGTTCCTCCTCTCTTAAT 58.021 34.615 0.00 0.00 0.00 1.40
7721 17048 7.374975 TCTCTTTTTGTTCCTCCTCTCTTAA 57.625 36.000 0.00 0.00 0.00 1.85
7722 17049 6.996180 TCTCTTTTTGTTCCTCCTCTCTTA 57.004 37.500 0.00 0.00 0.00 2.10
7723 17050 5.896073 TCTCTTTTTGTTCCTCCTCTCTT 57.104 39.130 0.00 0.00 0.00 2.85
7724 17051 5.616270 GTTCTCTTTTTGTTCCTCCTCTCT 58.384 41.667 0.00 0.00 0.00 3.10
7725 17052 4.449405 CGTTCTCTTTTTGTTCCTCCTCTC 59.551 45.833 0.00 0.00 0.00 3.20
7726 17053 4.141688 ACGTTCTCTTTTTGTTCCTCCTCT 60.142 41.667 0.00 0.00 0.00 3.69
7727 17054 4.127907 ACGTTCTCTTTTTGTTCCTCCTC 58.872 43.478 0.00 0.00 0.00 3.71
7728 17055 4.152284 ACGTTCTCTTTTTGTTCCTCCT 57.848 40.909 0.00 0.00 0.00 3.69
7729 17056 4.212847 GGTACGTTCTCTTTTTGTTCCTCC 59.787 45.833 0.00 0.00 0.00 4.30
7730 17057 5.050295 CAGGTACGTTCTCTTTTTGTTCCTC 60.050 44.000 0.00 0.00 29.23 3.71
7731 17058 4.814771 CAGGTACGTTCTCTTTTTGTTCCT 59.185 41.667 0.00 0.00 31.49 3.36
7732 17059 4.024302 CCAGGTACGTTCTCTTTTTGTTCC 60.024 45.833 0.00 0.00 0.00 3.62
7733 17060 4.812626 TCCAGGTACGTTCTCTTTTTGTTC 59.187 41.667 0.00 0.00 0.00 3.18
7734 17061 4.773013 TCCAGGTACGTTCTCTTTTTGTT 58.227 39.130 0.00 0.00 0.00 2.83
7735 17062 4.377897 CTCCAGGTACGTTCTCTTTTTGT 58.622 43.478 0.00 0.00 0.00 2.83
7736 17063 3.746492 CCTCCAGGTACGTTCTCTTTTTG 59.254 47.826 0.00 0.00 0.00 2.44
7737 17064 4.004196 CCTCCAGGTACGTTCTCTTTTT 57.996 45.455 0.00 0.00 0.00 1.94
7738 17065 3.679824 CCTCCAGGTACGTTCTCTTTT 57.320 47.619 0.00 0.00 0.00 2.27
7767 17118 3.744940 ATCAGGAAGAAGATGGGCAAA 57.255 42.857 0.00 0.00 0.00 3.68
7898 17263 2.233922 ACGGAAGTGATCTACTGGTTGG 59.766 50.000 0.00 0.00 46.97 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.