Multiple sequence alignment - TraesCS7B01G203100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G203100 chr7B 100.000 3666 0 0 1 3666 372336390 372340055 0.000000e+00 6734
1 TraesCS7B01G203100 chr7B 87.819 353 35 2 3263 3611 372339505 372339853 2.620000e-116 429
2 TraesCS7B01G203100 chr5B 97.639 2796 62 1 656 3451 185041518 185038727 0.000000e+00 4807
3 TraesCS7B01G203100 chr5B 98.507 2412 35 1 656 3067 696405426 696407836 0.000000e+00 4253
4 TraesCS7B01G203100 chr5B 88.333 300 31 1 3312 3611 185039058 185038763 5.780000e-98 368
5 TraesCS7B01G203100 chr5B 86.711 301 36 1 3312 3612 311959428 311959132 3.510000e-90 342
6 TraesCS7B01G203100 chr5B 91.498 247 21 0 3365 3611 185039058 185038812 1.260000e-89 340
7 TraesCS7B01G203100 chr5B 91.498 247 21 0 3365 3611 311959428 311959182 1.260000e-89 340
8 TraesCS7B01G203100 chr7A 98.023 2731 50 1 655 3385 65078296 65081022 0.000000e+00 4752
9 TraesCS7B01G203100 chr7A 97.663 2739 60 1 655 3393 701581459 701578725 0.000000e+00 4711
10 TraesCS7B01G203100 chr7A 95.152 660 23 4 1 655 424932807 424933462 0.000000e+00 1033
11 TraesCS7B01G203100 chr7A 94.332 247 14 0 3365 3611 701578998 701578752 2.670000e-101 379
12 TraesCS7B01G203100 chr7A 91.589 214 14 1 3282 3495 65081535 65081744 1.650000e-78 303
13 TraesCS7B01G203100 chr7A 82.390 159 24 1 3293 3451 701578627 701578473 8.200000e-32 148
14 TraesCS7B01G203100 chr7A 100.000 58 0 0 3609 3666 65084025 65084082 1.390000e-19 108
15 TraesCS7B01G203100 chr7A 100.000 58 0 0 3609 3666 701576198 701576141 1.390000e-19 108
16 TraesCS7B01G203100 chr4A 98.647 2660 35 1 655 3313 36323510 36320851 0.000000e+00 4711
17 TraesCS7B01G203100 chr4A 98.680 2651 33 1 635 3283 590267753 590265103 0.000000e+00 4700
18 TraesCS7B01G203100 chr4A 93.581 296 15 1 3316 3611 36320753 36320462 2.010000e-122 449
19 TraesCS7B01G203100 chr4A 97.610 251 6 0 3361 3611 590264620 590264370 7.270000e-117 431
20 TraesCS7B01G203100 chr4A 100.000 58 0 0 3609 3666 36318151 36318094 1.390000e-19 108
21 TraesCS7B01G203100 chr4A 100.000 58 0 0 3609 3666 590262059 590262002 1.390000e-19 108
22 TraesCS7B01G203100 chr3B 95.724 1988 78 3 655 2642 672736066 672734086 0.000000e+00 3193
23 TraesCS7B01G203100 chr3B 90.376 852 48 14 2584 3435 672734078 672733261 0.000000e+00 1099
24 TraesCS7B01G203100 chr3B 86.172 687 62 20 2584 3265 677970758 677970100 0.000000e+00 712
25 TraesCS7B01G203100 chr3B 83.731 461 58 12 200 654 692034609 692034160 1.570000e-113 420
26 TraesCS7B01G203100 chr3B 93.436 259 17 0 3354 3612 39638372 39638114 5.740000e-103 385
27 TraesCS7B01G203100 chr3B 93.421 228 15 0 3116 3343 39638361 39638134 4.530000e-89 339
28 TraesCS7B01G203100 chr3B 89.883 257 26 0 3355 3611 672733537 672733281 7.590000e-87 331
29 TraesCS7B01G203100 chr4B 95.388 1995 80 6 652 2642 180945810 180947796 0.000000e+00 3164
30 TraesCS7B01G203100 chr4B 89.167 240 22 1 3301 3540 312781906 312781671 1.280000e-79 307
31 TraesCS7B01G203100 chr4B 87.448 239 26 1 3253 3491 312781905 312781671 5.990000e-73 285
32 TraesCS7B01G203100 chr2B 95.329 1991 85 4 653 2642 40860804 40862787 0.000000e+00 3155
33 TraesCS7B01G203100 chr2B 100.000 58 0 0 3609 3666 40886362 40886419 1.390000e-19 108
34 TraesCS7B01G203100 chr2B 100.000 58 0 0 3609 3666 57908782 57908839 1.390000e-19 108
35 TraesCS7B01G203100 chr2A 85.723 1576 119 40 1467 2989 123570733 123572255 0.000000e+00 1567
36 TraesCS7B01G203100 chr2A 82.474 776 61 27 2584 3343 507384342 507383626 8.700000e-171 610
37 TraesCS7B01G203100 chr2A 80.960 646 48 23 2613 3242 581575312 581574726 3.360000e-120 442
38 TraesCS7B01G203100 chr2A 85.238 420 49 4 3017 3436 123630813 123631219 2.020000e-117 433
39 TraesCS7B01G203100 chr7D 91.840 674 25 6 1 655 377614858 377615520 0.000000e+00 913
40 TraesCS7B01G203100 chr3A 81.682 666 60 31 3 654 659009939 659009322 7.070000e-137 497
41 TraesCS7B01G203100 chr3D 84.314 459 50 14 200 654 524707510 524707070 2.620000e-116 429
42 TraesCS7B01G203100 chrUn 100.000 58 0 0 3609 3666 412977302 412977359 1.390000e-19 108
43 TraesCS7B01G203100 chr1A 98.276 58 1 0 3609 3666 27323456 27323513 6.480000e-18 102
44 TraesCS7B01G203100 chr1A 98.276 58 1 0 3609 3666 237738977 237738920 6.480000e-18 102
45 TraesCS7B01G203100 chr1A 98.276 58 1 0 3609 3666 394246520 394246577 6.480000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G203100 chr7B 372336390 372340055 3665 False 3581.500000 6734 93.909500 1 3666 2 chr7B.!!$F1 3665
1 TraesCS7B01G203100 chr5B 696405426 696407836 2410 False 4253.000000 4253 98.507000 656 3067 1 chr5B.!!$F1 2411
2 TraesCS7B01G203100 chr5B 185038727 185041518 2791 True 1838.333333 4807 92.490000 656 3611 3 chr5B.!!$R1 2955
3 TraesCS7B01G203100 chr7A 65078296 65084082 5786 False 1721.000000 4752 96.537333 655 3666 3 chr7A.!!$F2 3011
4 TraesCS7B01G203100 chr7A 701576141 701581459 5318 True 1336.500000 4711 93.596250 655 3666 4 chr7A.!!$R1 3011
5 TraesCS7B01G203100 chr7A 424932807 424933462 655 False 1033.000000 1033 95.152000 1 655 1 chr7A.!!$F1 654
6 TraesCS7B01G203100 chr4A 36318094 36323510 5416 True 1756.000000 4711 97.409333 655 3666 3 chr4A.!!$R1 3011
7 TraesCS7B01G203100 chr4A 590262002 590267753 5751 True 1746.333333 4700 98.763333 635 3666 3 chr4A.!!$R2 3031
8 TraesCS7B01G203100 chr3B 672733261 672736066 2805 True 1541.000000 3193 91.994333 655 3611 3 chr3B.!!$R4 2956
9 TraesCS7B01G203100 chr3B 677970100 677970758 658 True 712.000000 712 86.172000 2584 3265 1 chr3B.!!$R1 681
10 TraesCS7B01G203100 chr4B 180945810 180947796 1986 False 3164.000000 3164 95.388000 652 2642 1 chr4B.!!$F1 1990
11 TraesCS7B01G203100 chr2B 40860804 40862787 1983 False 3155.000000 3155 95.329000 653 2642 1 chr2B.!!$F1 1989
12 TraesCS7B01G203100 chr2A 123570733 123572255 1522 False 1567.000000 1567 85.723000 1467 2989 1 chr2A.!!$F1 1522
13 TraesCS7B01G203100 chr2A 507383626 507384342 716 True 610.000000 610 82.474000 2584 3343 1 chr2A.!!$R1 759
14 TraesCS7B01G203100 chr2A 581574726 581575312 586 True 442.000000 442 80.960000 2613 3242 1 chr2A.!!$R2 629
15 TraesCS7B01G203100 chr7D 377614858 377615520 662 False 913.000000 913 91.840000 1 655 1 chr7D.!!$F1 654
16 TraesCS7B01G203100 chr3A 659009322 659009939 617 True 497.000000 497 81.682000 3 654 1 chr3A.!!$R1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 597 0.178301 GCACAGGGAGGTAGTTAGGC 59.822 60.000 0.0 0.0 0.0 3.93 F
551 598 0.460311 CACAGGGAGGTAGTTAGGCG 59.540 60.000 0.0 0.0 0.0 5.52 F
552 599 0.686769 ACAGGGAGGTAGTTAGGCGG 60.687 60.000 0.0 0.0 0.0 6.13 F
648 695 1.375523 GAAAAGGAGGCCGAGCGAA 60.376 57.895 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1563 5.720371 TGCCACTGCAAAATAACAATACT 57.280 34.783 0.00 0.00 46.66 2.12 R
1995 2059 6.639632 AAACATGTTACTTCAGAAGCACAT 57.360 33.333 12.39 17.58 36.60 3.21 R
2572 2641 5.046735 AGCAATCTGAAGCTTCAACTCTAGA 60.047 40.000 28.16 20.59 38.01 2.43 R
2788 3006 7.025963 GCATAGTTCATCCTTTTCTCACAAAG 58.974 38.462 0.00 0.00 34.06 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.463833 CTTCAACACCGATAGCCCCC 60.464 60.000 0.00 0.00 0.00 5.40
120 129 5.172687 ACCAAACAGAACCAAAACCAATT 57.827 34.783 0.00 0.00 0.00 2.32
138 147 4.262549 CCAATTCAACCTGCCTGAATGAAA 60.263 41.667 0.00 0.00 41.56 2.69
159 168 0.984432 GGGGTTTCGGATGGGAGGTA 60.984 60.000 0.00 0.00 0.00 3.08
170 179 0.339162 TGGGAGGTACGAATGGGGTA 59.661 55.000 0.00 0.00 0.00 3.69
321 343 4.742201 GCTCTCAACGGCGCAGGA 62.742 66.667 13.26 0.44 0.00 3.86
496 543 2.525629 TGGAGTCGTTGCAGGGGA 60.526 61.111 0.00 0.00 0.00 4.81
503 550 1.228124 CGTTGCAGGGGAGGAACAA 60.228 57.895 0.00 0.00 39.47 2.83
504 551 0.609131 CGTTGCAGGGGAGGAACAAT 60.609 55.000 0.00 0.00 39.47 2.71
540 587 4.785453 GGCTTCCGGCACAGGGAG 62.785 72.222 0.00 0.00 44.01 4.30
541 588 4.785453 GCTTCCGGCACAGGGAGG 62.785 72.222 0.00 0.00 37.37 4.30
542 589 3.322466 CTTCCGGCACAGGGAGGT 61.322 66.667 0.00 0.00 33.10 3.85
543 590 1.987855 CTTCCGGCACAGGGAGGTA 60.988 63.158 0.00 0.00 33.10 3.08
544 591 1.961180 CTTCCGGCACAGGGAGGTAG 61.961 65.000 0.00 0.00 33.10 3.18
545 592 2.683933 CCGGCACAGGGAGGTAGT 60.684 66.667 0.00 0.00 0.00 2.73
546 593 2.291043 CCGGCACAGGGAGGTAGTT 61.291 63.158 0.00 0.00 0.00 2.24
547 594 0.974010 CCGGCACAGGGAGGTAGTTA 60.974 60.000 0.00 0.00 0.00 2.24
548 595 0.460311 CGGCACAGGGAGGTAGTTAG 59.540 60.000 0.00 0.00 0.00 2.34
549 596 0.831307 GGCACAGGGAGGTAGTTAGG 59.169 60.000 0.00 0.00 0.00 2.69
550 597 0.178301 GCACAGGGAGGTAGTTAGGC 59.822 60.000 0.00 0.00 0.00 3.93
551 598 0.460311 CACAGGGAGGTAGTTAGGCG 59.540 60.000 0.00 0.00 0.00 5.52
552 599 0.686769 ACAGGGAGGTAGTTAGGCGG 60.687 60.000 0.00 0.00 0.00 6.13
553 600 1.761271 AGGGAGGTAGTTAGGCGGC 60.761 63.158 0.00 0.00 0.00 6.53
554 601 2.416260 GGAGGTAGTTAGGCGGCG 59.584 66.667 0.51 0.51 0.00 6.46
555 602 2.416260 GAGGTAGTTAGGCGGCGG 59.584 66.667 9.78 0.00 0.00 6.13
556 603 3.786901 GAGGTAGTTAGGCGGCGGC 62.787 68.421 27.24 27.24 38.90 6.53
580 627 4.918201 GGCGGAAGGAGATGCCGG 62.918 72.222 0.00 0.00 44.92 6.13
581 628 4.162690 GCGGAAGGAGATGCCGGT 62.163 66.667 1.90 0.00 44.92 5.28
582 629 2.202932 CGGAAGGAGATGCCGGTG 60.203 66.667 1.90 0.00 43.43 4.94
583 630 2.190578 GGAAGGAGATGCCGGTGG 59.809 66.667 1.90 0.00 43.43 4.61
584 631 2.190578 GAAGGAGATGCCGGTGGG 59.809 66.667 1.90 0.00 43.43 4.61
585 632 2.285368 AAGGAGATGCCGGTGGGA 60.285 61.111 1.90 0.00 43.43 4.37
586 633 2.317149 GAAGGAGATGCCGGTGGGAG 62.317 65.000 1.90 0.00 43.43 4.30
587 634 3.866582 GGAGATGCCGGTGGGAGG 61.867 72.222 1.90 0.00 34.06 4.30
617 664 2.438614 TCGGTCTGAGCGAGGGAG 60.439 66.667 25.94 0.00 43.66 4.30
618 665 4.200283 CGGTCTGAGCGAGGGAGC 62.200 72.222 23.47 0.00 42.41 4.70
619 666 4.200283 GGTCTGAGCGAGGGAGCG 62.200 72.222 0.00 0.00 43.00 5.03
620 667 3.134792 GTCTGAGCGAGGGAGCGA 61.135 66.667 0.00 0.00 43.00 4.93
621 668 3.134792 TCTGAGCGAGGGAGCGAC 61.135 66.667 0.00 0.00 43.00 5.19
622 669 4.544689 CTGAGCGAGGGAGCGACG 62.545 72.222 0.00 0.00 43.00 5.12
640 687 2.438614 GCGAGGGGAAAAGGAGGC 60.439 66.667 0.00 0.00 0.00 4.70
641 688 2.272471 CGAGGGGAAAAGGAGGCC 59.728 66.667 0.00 0.00 0.00 5.19
648 695 1.375523 GAAAAGGAGGCCGAGCGAA 60.376 57.895 0.00 0.00 0.00 4.70
650 697 3.934391 AAAGGAGGCCGAGCGAACG 62.934 63.158 0.00 0.00 0.00 3.95
777 828 2.986479 GCAAATCGGGCTAAACTTTGTG 59.014 45.455 0.00 0.00 0.00 3.33
1365 1417 7.630728 GCCGGTATGAATTCTATGCTGATAGTA 60.631 40.741 1.90 0.00 34.23 1.82
1995 2059 9.834628 GTTATTGCTTTGCACTAGTTATTTACA 57.165 29.630 0.00 0.00 38.71 2.41
2572 2641 2.238395 GGAGAAGCTCACCCAAGAGAAT 59.762 50.000 0.00 0.00 37.87 2.40
2788 3006 9.372369 GTATGTAGTAGATATGCTTTTCATCCC 57.628 37.037 0.00 0.00 36.63 3.85
2850 3068 7.141758 ACTCCACTATGTATTTGTGATGGAT 57.858 36.000 0.00 0.00 34.59 3.41
3167 3385 1.133598 GCAACCGTAAACCCTAATGGC 59.866 52.381 0.00 0.00 37.83 4.40
3327 3646 3.632145 CCATCATGGTTAGGTTAAGGTGC 59.368 47.826 0.00 0.00 31.35 5.01
3432 4526 7.123383 CCCTAATGGTTAGATTAAGGTGGTTT 58.877 38.462 0.00 0.00 35.20 3.27
3436 4530 5.623169 TGGTTAGATTAAGGTGGTTTCGTT 58.377 37.500 0.00 0.00 0.00 3.85
3441 4535 3.564053 TTAAGGTGGTTTCGTTGACCT 57.436 42.857 0.00 0.00 40.71 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.605453 GGGGGCTATCGGTGTTGAA 59.395 57.895 0.00 0.00 0.00 2.69
120 129 2.517959 CCTTTCATTCAGGCAGGTTGA 58.482 47.619 0.00 0.00 0.00 3.18
138 147 2.001269 CTCCCATCCGAAACCCCCT 61.001 63.158 0.00 0.00 0.00 4.79
159 168 1.999002 CCCACCCTACCCCATTCGT 60.999 63.158 0.00 0.00 0.00 3.85
321 343 0.738389 GCTAGCTGACTCGCTCTCTT 59.262 55.000 7.70 0.00 41.30 2.85
332 354 3.226777 GAATCCCTGTCTAGCTAGCTGA 58.773 50.000 27.68 18.45 0.00 4.26
496 543 0.460284 CCGCAGCGTCTATTGTTCCT 60.460 55.000 15.05 0.00 0.00 3.36
503 550 3.917760 GCTCCCCGCAGCGTCTAT 61.918 66.667 15.05 0.00 38.92 1.98
525 572 1.961180 CTACCTCCCTGTGCCGGAAG 61.961 65.000 5.05 0.00 0.00 3.46
526 573 1.987855 CTACCTCCCTGTGCCGGAA 60.988 63.158 5.05 0.00 0.00 4.30
537 584 2.416260 CGCCGCCTAACTACCTCC 59.584 66.667 0.00 0.00 0.00 4.30
538 585 2.416260 CCGCCGCCTAACTACCTC 59.584 66.667 0.00 0.00 0.00 3.85
539 586 3.846430 GCCGCCGCCTAACTACCT 61.846 66.667 0.00 0.00 0.00 3.08
563 610 4.918201 CCGGCATCTCCTTCCGCC 62.918 72.222 0.00 0.00 41.68 6.13
564 611 4.162690 ACCGGCATCTCCTTCCGC 62.163 66.667 0.00 0.00 41.68 5.54
565 612 2.202932 CACCGGCATCTCCTTCCG 60.203 66.667 0.00 0.00 42.58 4.30
566 613 2.190578 CCACCGGCATCTCCTTCC 59.809 66.667 0.00 0.00 0.00 3.46
567 614 2.190578 CCCACCGGCATCTCCTTC 59.809 66.667 0.00 0.00 0.00 3.46
568 615 2.285368 TCCCACCGGCATCTCCTT 60.285 61.111 0.00 0.00 0.00 3.36
569 616 2.765807 CTCCCACCGGCATCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
570 617 3.866582 CCTCCCACCGGCATCTCC 61.867 72.222 0.00 0.00 0.00 3.71
571 618 4.554036 GCCTCCCACCGGCATCTC 62.554 72.222 0.00 0.00 46.77 2.75
597 644 4.838486 CCTCGCTCAGACCGACGC 62.838 72.222 0.00 0.00 0.00 5.19
598 645 4.180946 CCCTCGCTCAGACCGACG 62.181 72.222 0.00 0.00 0.00 5.12
599 646 2.750637 TCCCTCGCTCAGACCGAC 60.751 66.667 0.00 0.00 0.00 4.79
600 647 2.438614 CTCCCTCGCTCAGACCGA 60.439 66.667 0.00 0.00 0.00 4.69
601 648 4.200283 GCTCCCTCGCTCAGACCG 62.200 72.222 0.00 0.00 0.00 4.79
602 649 4.200283 CGCTCCCTCGCTCAGACC 62.200 72.222 0.00 0.00 0.00 3.85
603 650 3.134792 TCGCTCCCTCGCTCAGAC 61.135 66.667 0.00 0.00 0.00 3.51
604 651 3.134792 GTCGCTCCCTCGCTCAGA 61.135 66.667 0.00 0.00 0.00 3.27
605 652 4.544689 CGTCGCTCCCTCGCTCAG 62.545 72.222 0.00 0.00 0.00 3.35
618 665 2.813908 CTTTTCCCCTCGCCGTCG 60.814 66.667 0.00 0.00 0.00 5.12
619 666 2.436115 CCTTTTCCCCTCGCCGTC 60.436 66.667 0.00 0.00 0.00 4.79
620 667 2.926242 TCCTTTTCCCCTCGCCGT 60.926 61.111 0.00 0.00 0.00 5.68
621 668 2.125106 CTCCTTTTCCCCTCGCCG 60.125 66.667 0.00 0.00 0.00 6.46
622 669 2.272471 CCTCCTTTTCCCCTCGCC 59.728 66.667 0.00 0.00 0.00 5.54
623 670 2.438614 GCCTCCTTTTCCCCTCGC 60.439 66.667 0.00 0.00 0.00 5.03
624 671 2.272471 GGCCTCCTTTTCCCCTCG 59.728 66.667 0.00 0.00 0.00 4.63
625 672 2.258748 CTCGGCCTCCTTTTCCCCTC 62.259 65.000 0.00 0.00 0.00 4.30
626 673 2.204090 TCGGCCTCCTTTTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
627 674 2.272471 CTCGGCCTCCTTTTCCCC 59.728 66.667 0.00 0.00 0.00 4.81
628 675 2.438614 GCTCGGCCTCCTTTTCCC 60.439 66.667 0.00 0.00 0.00 3.97
629 676 2.798148 TTCGCTCGGCCTCCTTTTCC 62.798 60.000 0.00 0.00 0.00 3.13
630 677 1.375523 TTCGCTCGGCCTCCTTTTC 60.376 57.895 0.00 0.00 0.00 2.29
631 678 1.671379 GTTCGCTCGGCCTCCTTTT 60.671 57.895 0.00 0.00 0.00 2.27
632 679 2.047179 GTTCGCTCGGCCTCCTTT 60.047 61.111 0.00 0.00 0.00 3.11
633 680 4.436998 CGTTCGCTCGGCCTCCTT 62.437 66.667 0.00 0.00 0.00 3.36
640 687 0.109873 AACTCTACACGTTCGCTCGG 60.110 55.000 0.00 0.00 34.94 4.63
641 688 2.515641 TAACTCTACACGTTCGCTCG 57.484 50.000 0.00 0.00 0.00 5.03
650 697 9.657121 GGTACTATCGTGTAATTAACTCTACAC 57.343 37.037 11.62 11.62 42.88 2.90
730 781 3.306919 GGTTCGGTCCAAACATGGTACTA 60.307 47.826 0.00 0.00 0.00 1.82
1511 1563 5.720371 TGCCACTGCAAAATAACAATACT 57.280 34.783 0.00 0.00 46.66 2.12
1696 1749 8.522830 CATCCCAACATAAAAGTTACAGTTCAT 58.477 33.333 0.00 0.00 0.00 2.57
1995 2059 6.639632 AAACATGTTACTTCAGAAGCACAT 57.360 33.333 12.39 17.58 36.60 3.21
2572 2641 5.046735 AGCAATCTGAAGCTTCAACTCTAGA 60.047 40.000 28.16 20.59 38.01 2.43
2788 3006 7.025963 GCATAGTTCATCCTTTTCTCACAAAG 58.974 38.462 0.00 0.00 34.06 2.77
2850 3068 7.289084 TCAACATATTATAGGGTACACAGCAGA 59.711 37.037 0.00 0.00 0.00 4.26
3167 3385 4.797349 GTCGACGAAACCACCTTAATCTAG 59.203 45.833 0.00 0.00 0.00 2.43
3432 4526 2.649034 GTGGCTCGAGGTCAACGA 59.351 61.111 15.58 0.00 38.11 3.85
3436 4530 1.180456 TTTACGGTGGCTCGAGGTCA 61.180 55.000 15.58 0.00 0.00 4.02
3441 4535 0.108520 GATGGTTTACGGTGGCTCGA 60.109 55.000 7.70 0.00 0.00 4.04
3498 4688 5.868043 AACCTAACCATTAGTGTTTACGC 57.132 39.130 0.00 0.00 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.