Multiple sequence alignment - TraesCS7B01G202900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G202900 chr7B 100.000 4507 0 0 1 4507 372049845 372045339 0.000000e+00 8323.0
1 TraesCS7B01G202900 chr7B 95.623 297 12 1 4211 4507 51052715 51053010 4.080000e-130 475.0
2 TraesCS7B01G202900 chr7A 95.515 2542 96 9 698 3239 424631458 424628935 0.000000e+00 4047.0
3 TraesCS7B01G202900 chr7A 90.112 1254 92 5 1033 2274 680390371 680391604 0.000000e+00 1600.0
4 TraesCS7B01G202900 chr7A 89.560 728 51 16 3265 3975 424628590 424627871 0.000000e+00 900.0
5 TraesCS7B01G202900 chr7A 85.714 714 47 12 174 845 424632171 424631471 0.000000e+00 702.0
6 TraesCS7B01G202900 chr7A 91.350 474 38 3 2365 2836 680391649 680392121 0.000000e+00 645.0
7 TraesCS7B01G202900 chr7A 89.035 456 27 9 2943 3381 680392123 680392572 1.100000e-150 544.0
8 TraesCS7B01G202900 chr7A 83.303 545 40 21 282 805 680383790 680384304 5.310000e-124 455.0
9 TraesCS7B01G202900 chr7A 92.766 235 14 3 816 1048 680390121 680390354 2.010000e-88 337.0
10 TraesCS7B01G202900 chr7A 85.366 287 35 7 3493 3774 680393401 680393685 1.590000e-74 291.0
11 TraesCS7B01G202900 chr7A 96.875 32 1 0 487 518 424632491 424632460 2.000000e-03 54.7
12 TraesCS7B01G202900 chr7D 89.805 2570 200 30 816 3352 588790349 588787809 0.000000e+00 3238.0
13 TraesCS7B01G202900 chr7D 93.480 1641 70 13 275 1890 376956092 376954464 0.000000e+00 2403.0
14 TraesCS7B01G202900 chr7D 95.992 973 33 3 2293 3264 376952093 376951126 0.000000e+00 1576.0
15 TraesCS7B01G202900 chr7D 91.373 881 45 12 3265 4127 376951013 376950146 0.000000e+00 1177.0
16 TraesCS7B01G202900 chr7D 97.949 390 8 0 1890 2279 376954018 376953629 0.000000e+00 676.0
17 TraesCS7B01G202900 chr7D 86.079 431 37 14 285 707 588791232 588790817 4.140000e-120 442.0
18 TraesCS7B01G202900 chr7D 82.589 224 18 10 58 264 376956362 376956143 1.290000e-40 178.0
19 TraesCS7B01G202900 chr3B 93.266 297 19 1 4211 4507 79958844 79959139 1.930000e-118 436.0
20 TraesCS7B01G202900 chr2B 92.617 298 19 3 4211 4507 717631832 717632127 4.170000e-115 425.0
21 TraesCS7B01G202900 chr1B 91.246 297 23 3 4211 4507 274860333 274860040 7.020000e-108 401.0
22 TraesCS7B01G202900 chr6A 91.186 295 23 3 4213 4507 610060840 610060549 9.080000e-107 398.0
23 TraesCS7B01G202900 chr3A 90.909 297 24 3 4211 4507 655652119 655652412 3.270000e-106 396.0
24 TraesCS7B01G202900 chr2A 90.236 297 27 2 4211 4507 747330978 747331272 1.970000e-103 387.0
25 TraesCS7B01G202900 chr2A 89.262 298 29 3 4211 4507 604843498 604843793 1.980000e-98 370.0
26 TraesCS7B01G202900 chr1A 88.926 298 30 3 4211 4507 486399848 486399553 9.210000e-97 364.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G202900 chr7B 372045339 372049845 4506 True 8323.000 8323 100.0000 1 4507 1 chr7B.!!$R1 4506
1 TraesCS7B01G202900 chr7A 424627871 424632491 4620 True 1425.925 4047 91.9160 174 3975 4 chr7A.!!$R1 3801
2 TraesCS7B01G202900 chr7A 680390121 680393685 3564 False 683.400 1600 89.7258 816 3774 5 chr7A.!!$F2 2958
3 TraesCS7B01G202900 chr7A 680383790 680384304 514 False 455.000 455 83.3030 282 805 1 chr7A.!!$F1 523
4 TraesCS7B01G202900 chr7D 588787809 588791232 3423 True 1840.000 3238 87.9420 285 3352 2 chr7D.!!$R2 3067
5 TraesCS7B01G202900 chr7D 376950146 376956362 6216 True 1202.000 2403 92.2766 58 4127 5 chr7D.!!$R1 4069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.035152 TTCGCATCAACCTGCTCCAT 60.035 50.000 0.0 0.0 40.06 3.41 F
1272 1901 0.326264 ACCTCAAGACTGACCATGCC 59.674 55.000 0.0 0.0 0.00 4.40 F
1779 2408 0.175760 TGACGAGCCAGATTAGTGCC 59.824 55.000 0.0 0.0 0.00 5.01 F
1903 2978 1.770518 GGTATCCCCCACTCCCCAG 60.771 68.421 0.0 0.0 0.00 4.45 F
2745 5356 4.299978 AGAAACGTACTGAAGAGCTGAAC 58.700 43.478 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2351 0.534412 CAGTCTTGCGGGACATCTCT 59.466 55.0 10.68 0.0 38.57 3.10 R
2766 5377 0.321564 CCAGGTCTTCCATTGCGTCA 60.322 55.0 0.00 0.0 35.89 4.35 R
2881 5495 0.796312 GACAAGTGTGTATGCGTGGG 59.204 55.0 0.00 0.0 38.41 4.61 R
2882 5496 0.796312 GGACAAGTGTGTATGCGTGG 59.204 55.0 0.00 0.0 38.41 4.94 R
4166 7977 0.035630 ACTCATCCACAGGCAAGAGC 60.036 55.0 0.00 0.0 41.10 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.331319 CGATGAGCTCTGCCATGC 58.669 61.111 16.19 0.00 0.00 4.06
18 19 2.252346 CGATGAGCTCTGCCATGCC 61.252 63.158 16.19 0.00 0.00 4.40
19 20 2.203167 ATGAGCTCTGCCATGCCG 60.203 61.111 16.19 0.00 0.00 5.69
20 21 2.937379 GATGAGCTCTGCCATGCCGT 62.937 60.000 16.19 0.00 0.00 5.68
21 22 2.894387 GAGCTCTGCCATGCCGTC 60.894 66.667 6.43 0.00 0.00 4.79
22 23 4.827087 AGCTCTGCCATGCCGTCG 62.827 66.667 0.00 0.00 0.00 5.12
40 41 2.434359 CAGACCGCCGGAAACTCC 60.434 66.667 11.71 0.00 0.00 3.85
50 51 3.125573 GAAACTCCGCCGCCCTTC 61.126 66.667 0.00 0.00 0.00 3.46
67 68 0.035152 TTCGCATCAACCTGCTCCAT 60.035 50.000 0.00 0.00 40.06 3.41
68 69 0.745486 TCGCATCAACCTGCTCCATG 60.745 55.000 0.00 0.00 40.06 3.66
81 82 1.123077 CTCCATGGTCCGATCCTTCA 58.877 55.000 12.58 0.00 0.00 3.02
82 83 0.830648 TCCATGGTCCGATCCTTCAC 59.169 55.000 12.58 0.00 0.00 3.18
84 85 0.833287 CATGGTCCGATCCTTCACCT 59.167 55.000 0.00 0.00 0.00 4.00
95 96 0.462759 CCTTCACCTCGCCATCCTTC 60.463 60.000 0.00 0.00 0.00 3.46
101 102 1.361993 CTCGCCATCCTTCTCCTCG 59.638 63.158 0.00 0.00 0.00 4.63
106 107 1.539280 GCCATCCTTCTCCTCGCTAAC 60.539 57.143 0.00 0.00 0.00 2.34
110 111 2.244695 TCCTTCTCCTCGCTAACAACA 58.755 47.619 0.00 0.00 0.00 3.33
116 117 1.635663 CCTCGCTAACAACAAGCCGG 61.636 60.000 0.00 0.00 36.60 6.13
176 190 1.135083 CCTCACTAACAACGAGCCGAT 60.135 52.381 1.50 0.00 0.00 4.18
193 341 0.391661 GATCTGCTCAAAGGTCCGCA 60.392 55.000 0.00 0.00 0.00 5.69
272 423 4.214332 CCTGCTAAGACAGAAGAACCAAAC 59.786 45.833 0.00 0.00 40.25 2.93
286 480 5.318630 AGAACCAAACGTGTATAAATGGGT 58.681 37.500 0.00 0.00 32.21 4.51
289 483 3.129638 CCAAACGTGTATAAATGGGTGGG 59.870 47.826 0.00 0.00 0.00 4.61
307 501 1.377725 GTGGGTGATGCAGTCCAGG 60.378 63.158 0.00 0.00 0.00 4.45
350 546 5.837770 AAAGATCATGATCCATGGCTCTA 57.162 39.130 28.23 3.99 41.66 2.43
363 559 3.735237 TGGCTCTATTTCTCCACGATC 57.265 47.619 0.00 0.00 0.00 3.69
366 563 3.057174 GGCTCTATTTCTCCACGATCGAT 60.057 47.826 24.34 0.00 0.00 3.59
376 573 1.656652 CACGATCGATTGCCTCCTTT 58.343 50.000 24.34 0.00 0.00 3.11
390 587 1.205655 CTCCTTTCCTGAGATGCACGA 59.794 52.381 0.00 0.00 31.26 4.35
434 636 3.044986 CGTCGTGGTCTCGTTTCTTTTA 58.955 45.455 0.00 0.00 0.00 1.52
518 724 4.801330 TTGGTTAATCTCTCTTGCTCGA 57.199 40.909 0.00 0.00 0.00 4.04
520 726 3.120041 GGTTAATCTCTCTTGCTCGAGC 58.880 50.000 30.42 30.42 42.50 5.03
559 765 2.568979 TGGGGTATTGCTTTAGAGGGT 58.431 47.619 0.00 0.00 0.00 4.34
594 800 4.752879 GGAGGTGCGCTGGCGTTA 62.753 66.667 16.21 3.66 44.10 3.18
722 958 3.189287 GGCTTACATCTCCAACACTGTTG 59.811 47.826 14.11 14.11 0.00 3.33
729 965 5.586243 ACATCTCCAACACTGTTGCATATAC 59.414 40.000 15.42 0.00 0.00 1.47
801 1037 5.769662 TGGTGTTTCTCTTGTTGCTATCAAT 59.230 36.000 0.00 0.00 34.29 2.57
802 1038 6.265196 TGGTGTTTCTCTTGTTGCTATCAATT 59.735 34.615 0.00 0.00 34.29 2.32
803 1039 6.583806 GGTGTTTCTCTTGTTGCTATCAATTG 59.416 38.462 0.00 0.00 34.29 2.32
804 1040 6.583806 GTGTTTCTCTTGTTGCTATCAATTGG 59.416 38.462 5.42 0.00 34.29 3.16
805 1041 6.265196 TGTTTCTCTTGTTGCTATCAATTGGT 59.735 34.615 5.42 0.00 34.29 3.67
806 1042 5.885230 TCTCTTGTTGCTATCAATTGGTG 57.115 39.130 5.42 0.00 34.29 4.17
877 1468 6.545504 AACATCAGTGTGTTAACTGCTTAG 57.454 37.500 7.22 0.00 45.93 2.18
997 1594 7.067981 GCTGATCATTCCTTATTTTCAGGTCTT 59.932 37.037 0.00 0.00 32.59 3.01
1128 1757 1.676014 GGCGCAGACAGGTTTAGATGT 60.676 52.381 10.83 0.00 31.66 3.06
1272 1901 0.326264 ACCTCAAGACTGACCATGCC 59.674 55.000 0.00 0.00 0.00 4.40
1650 2279 3.560105 GCTGGCAAAAGAGGAGGATTAT 58.440 45.455 0.00 0.00 0.00 1.28
1722 2351 0.740149 CAGTGGCTGAACTGCAACAA 59.260 50.000 12.33 0.00 41.05 2.83
1779 2408 0.175760 TGACGAGCCAGATTAGTGCC 59.824 55.000 0.00 0.00 0.00 5.01
1903 2978 1.770518 GGTATCCCCCACTCCCCAG 60.771 68.421 0.00 0.00 0.00 4.45
1980 3055 9.101655 TGATCATGTCTACTGTATCATGTTTTG 57.898 33.333 21.22 7.87 38.78 2.44
2244 3331 8.746052 TCATTTATACCGGAATTCAGTGAATT 57.254 30.769 27.23 27.23 43.77 2.17
2308 4917 6.379386 TGATATTGTTCTCGGAATACTAGCG 58.621 40.000 0.00 0.00 0.00 4.26
2312 4921 4.418392 TGTTCTCGGAATACTAGCGTTTC 58.582 43.478 0.00 0.00 0.00 2.78
2552 5163 8.210265 AGAGTTTCCATTCCAGAATCTAGAATC 58.790 37.037 0.98 0.00 0.00 2.52
2679 5290 5.238214 GGATATTCAACAGCTTAGAGGCAAG 59.762 44.000 0.00 0.00 34.17 4.01
2745 5356 4.299978 AGAAACGTACTGAAGAGCTGAAC 58.700 43.478 0.00 0.00 0.00 3.18
2766 5377 8.324191 TGAACAAGGATCTACAGGATAGAATT 57.676 34.615 0.00 0.00 34.33 2.17
2870 5481 7.094377 TGCAAAGAAAGAGCTTATTTCGGTAAT 60.094 33.333 15.61 0.99 40.75 1.89
2881 5495 8.823818 AGCTTATTTCGGTAATGTTACATACAC 58.176 33.333 0.00 0.00 40.19 2.90
2882 5496 8.066000 GCTTATTTCGGTAATGTTACATACACC 58.934 37.037 15.20 15.20 40.19 4.16
2883 5497 6.930667 ATTTCGGTAATGTTACATACACCC 57.069 37.500 17.82 7.56 40.19 4.61
2884 5498 5.417754 TTCGGTAATGTTACATACACCCA 57.582 39.130 17.82 7.53 40.19 4.51
2889 5503 2.772077 TGTTACATACACCCACGCAT 57.228 45.000 0.00 0.00 0.00 4.73
2900 5514 0.796312 CCCACGCATACACACTTGTC 59.204 55.000 0.00 0.00 37.15 3.18
2904 5518 1.337823 ACGCATACACACTTGTCCTCC 60.338 52.381 0.00 0.00 37.15 4.30
2927 5541 5.107259 CCTTAACAGTTTTTATTTTGCGGGC 60.107 40.000 0.00 0.00 0.00 6.13
3162 5780 5.007682 GCACCCTTTTAAGATAGTGACCAA 58.992 41.667 9.81 0.00 0.00 3.67
3193 5811 3.504906 AGTCTGAGGTACGAACGATCAAA 59.495 43.478 0.14 0.00 0.00 2.69
3196 5814 4.157105 TCTGAGGTACGAACGATCAAATGA 59.843 41.667 0.14 0.00 0.00 2.57
3213 5831 9.448294 GATCAAATGAAGTGATTCTTATCTTGC 57.552 33.333 0.00 0.00 35.84 4.01
3230 5848 4.460263 TCTTGCTGCCTTCTTGTCTTAAA 58.540 39.130 0.00 0.00 0.00 1.52
3233 5851 3.565482 TGCTGCCTTCTTGTCTTAAACAG 59.435 43.478 0.00 0.00 39.58 3.16
3551 7329 1.116308 AGTGGTTTTCGTTTTGGGGG 58.884 50.000 0.00 0.00 0.00 5.40
3617 7396 4.881273 TGAACTGCAAGACAAGTTATGTGT 59.119 37.500 0.00 0.00 44.12 3.72
3705 7489 5.177327 ACAATGGTTGCAATGAATCGTTTTC 59.823 36.000 0.59 0.00 0.00 2.29
3713 7497 5.106555 TGCAATGAATCGTTTTCTCTTCCTC 60.107 40.000 0.00 0.00 0.00 3.71
3714 7498 5.554636 CAATGAATCGTTTTCTCTTCCTCG 58.445 41.667 0.00 0.00 0.00 4.63
3794 7588 3.070076 GCATCTGGCATGAACTCGA 57.930 52.632 0.00 0.00 43.97 4.04
3836 7634 2.409948 AGCCCATGTGCTCTAAGTTC 57.590 50.000 0.00 0.00 36.75 3.01
3878 7687 7.820044 TGTTTTTGTTTGTCCATGTAAGAAC 57.180 32.000 0.00 0.00 0.00 3.01
3926 7735 1.091771 CCAATGCTCGCCGATTGACT 61.092 55.000 0.73 0.00 32.24 3.41
3929 7738 0.747255 ATGCTCGCCGATTGACTAGT 59.253 50.000 0.00 0.00 0.00 2.57
3930 7739 0.179137 TGCTCGCCGATTGACTAGTG 60.179 55.000 0.00 0.00 0.00 2.74
3975 7784 1.639534 CGTTCGTTGCGTTGTCCTT 59.360 52.632 0.00 0.00 0.00 3.36
3976 7785 0.027063 CGTTCGTTGCGTTGTCCTTT 59.973 50.000 0.00 0.00 0.00 3.11
3982 7791 1.404035 GTTGCGTTGTCCTTTGTCCTT 59.596 47.619 0.00 0.00 0.00 3.36
4001 7810 0.974010 TCAACCGTCGGATTAGGGCT 60.974 55.000 20.51 0.00 0.00 5.19
4017 7826 3.830121 AGGGCTCATTCTTCATCCATTC 58.170 45.455 0.00 0.00 0.00 2.67
4032 7841 3.282831 CCATTCCGTGGTTGTCTTTTC 57.717 47.619 0.00 0.00 43.44 2.29
4034 7843 1.682740 TTCCGTGGTTGTCTTTTCCC 58.317 50.000 0.00 0.00 0.00 3.97
4073 7884 2.164624 CGTAGGAGGGAAAGAGTGACAG 59.835 54.545 0.00 0.00 0.00 3.51
4100 7911 3.760035 CTGACCGTCCCGACCCAG 61.760 72.222 0.00 0.00 0.00 4.45
4127 7938 0.670546 CGTGAGGCCTCGTTGTTGAT 60.671 55.000 27.43 0.00 0.00 2.57
4128 7939 0.798776 GTGAGGCCTCGTTGTTGATG 59.201 55.000 27.43 0.00 0.00 3.07
4129 7940 0.684535 TGAGGCCTCGTTGTTGATGA 59.315 50.000 27.43 2.92 0.00 2.92
4130 7941 1.278985 TGAGGCCTCGTTGTTGATGAT 59.721 47.619 27.43 0.00 0.00 2.45
4131 7942 1.667724 GAGGCCTCGTTGTTGATGATG 59.332 52.381 19.06 0.00 0.00 3.07
4132 7943 1.003580 AGGCCTCGTTGTTGATGATGT 59.996 47.619 0.00 0.00 0.00 3.06
4133 7944 2.236146 AGGCCTCGTTGTTGATGATGTA 59.764 45.455 0.00 0.00 0.00 2.29
4134 7945 2.351726 GGCCTCGTTGTTGATGATGTAC 59.648 50.000 0.00 0.00 0.00 2.90
4135 7946 3.262420 GCCTCGTTGTTGATGATGTACT 58.738 45.455 0.00 0.00 0.00 2.73
4136 7947 3.684788 GCCTCGTTGTTGATGATGTACTT 59.315 43.478 0.00 0.00 0.00 2.24
4137 7948 4.436050 GCCTCGTTGTTGATGATGTACTTG 60.436 45.833 0.00 0.00 0.00 3.16
4138 7949 4.436050 CCTCGTTGTTGATGATGTACTTGC 60.436 45.833 0.00 0.00 0.00 4.01
4139 7950 4.061596 TCGTTGTTGATGATGTACTTGCA 58.938 39.130 0.00 0.00 0.00 4.08
4140 7951 4.513318 TCGTTGTTGATGATGTACTTGCAA 59.487 37.500 0.00 0.00 0.00 4.08
4141 7952 4.612614 CGTTGTTGATGATGTACTTGCAAC 59.387 41.667 0.00 0.00 36.92 4.17
4142 7953 4.764679 TGTTGATGATGTACTTGCAACC 57.235 40.909 0.00 0.00 35.89 3.77
4143 7954 4.397420 TGTTGATGATGTACTTGCAACCT 58.603 39.130 0.00 0.00 35.89 3.50
4144 7955 4.455533 TGTTGATGATGTACTTGCAACCTC 59.544 41.667 0.00 0.00 35.89 3.85
4145 7956 3.261580 TGATGATGTACTTGCAACCTCG 58.738 45.455 0.00 0.00 0.00 4.63
4146 7957 1.438651 TGATGTACTTGCAACCTCGC 58.561 50.000 0.00 0.00 0.00 5.03
4147 7958 0.727398 GATGTACTTGCAACCTCGCC 59.273 55.000 0.00 0.00 0.00 5.54
4148 7959 0.036164 ATGTACTTGCAACCTCGCCA 59.964 50.000 0.00 0.00 0.00 5.69
4149 7960 0.036164 TGTACTTGCAACCTCGCCAT 59.964 50.000 0.00 0.00 0.00 4.40
4150 7961 0.727398 GTACTTGCAACCTCGCCATC 59.273 55.000 0.00 0.00 0.00 3.51
4151 7962 0.323302 TACTTGCAACCTCGCCATCA 59.677 50.000 0.00 0.00 0.00 3.07
4152 7963 1.237285 ACTTGCAACCTCGCCATCAC 61.237 55.000 0.00 0.00 0.00 3.06
4153 7964 1.228094 TTGCAACCTCGCCATCACA 60.228 52.632 0.00 0.00 0.00 3.58
4154 7965 0.821301 TTGCAACCTCGCCATCACAA 60.821 50.000 0.00 0.00 0.00 3.33
4155 7966 1.210155 GCAACCTCGCCATCACAAC 59.790 57.895 0.00 0.00 0.00 3.32
4156 7967 1.875963 CAACCTCGCCATCACAACC 59.124 57.895 0.00 0.00 0.00 3.77
4157 7968 0.606401 CAACCTCGCCATCACAACCT 60.606 55.000 0.00 0.00 0.00 3.50
4158 7969 0.110486 AACCTCGCCATCACAACCTT 59.890 50.000 0.00 0.00 0.00 3.50
4159 7970 0.606401 ACCTCGCCATCACAACCTTG 60.606 55.000 0.00 0.00 0.00 3.61
4160 7971 0.606401 CCTCGCCATCACAACCTTGT 60.606 55.000 0.00 0.00 43.36 3.16
4161 7972 1.238439 CTCGCCATCACAACCTTGTT 58.762 50.000 0.00 0.00 39.91 2.83
4162 7973 1.608590 CTCGCCATCACAACCTTGTTT 59.391 47.619 0.00 0.00 39.91 2.83
4163 7974 1.336440 TCGCCATCACAACCTTGTTTG 59.664 47.619 0.00 0.00 39.91 2.93
4164 7975 1.066908 CGCCATCACAACCTTGTTTGT 59.933 47.619 0.00 0.00 39.91 2.83
4165 7976 2.292016 CGCCATCACAACCTTGTTTGTA 59.708 45.455 0.00 0.00 39.91 2.41
4166 7977 3.609175 CGCCATCACAACCTTGTTTGTAG 60.609 47.826 0.00 0.00 39.91 2.74
4167 7978 3.857010 GCCATCACAACCTTGTTTGTAGC 60.857 47.826 0.00 0.00 39.91 3.58
4168 7979 3.569701 CCATCACAACCTTGTTTGTAGCT 59.430 43.478 0.00 0.00 39.91 3.32
4169 7980 4.320494 CCATCACAACCTTGTTTGTAGCTC 60.320 45.833 0.00 0.00 39.91 4.09
4170 7981 4.150897 TCACAACCTTGTTTGTAGCTCT 57.849 40.909 0.00 0.00 39.91 4.09
4171 7982 4.523083 TCACAACCTTGTTTGTAGCTCTT 58.477 39.130 0.00 0.00 39.91 2.85
4172 7983 4.335315 TCACAACCTTGTTTGTAGCTCTTG 59.665 41.667 0.00 0.00 39.91 3.02
4173 7984 3.066760 ACAACCTTGTTTGTAGCTCTTGC 59.933 43.478 0.00 0.00 38.47 4.01
4174 7985 2.230660 ACCTTGTTTGTAGCTCTTGCC 58.769 47.619 0.00 0.00 40.80 4.52
4175 7986 2.158608 ACCTTGTTTGTAGCTCTTGCCT 60.159 45.455 0.00 0.00 40.80 4.75
4176 7987 2.227388 CCTTGTTTGTAGCTCTTGCCTG 59.773 50.000 0.00 0.00 40.80 4.85
4177 7988 2.638480 TGTTTGTAGCTCTTGCCTGT 57.362 45.000 0.00 0.00 40.80 4.00
4178 7989 2.221169 TGTTTGTAGCTCTTGCCTGTG 58.779 47.619 0.00 0.00 40.80 3.66
4179 7990 1.537202 GTTTGTAGCTCTTGCCTGTGG 59.463 52.381 0.00 0.00 40.80 4.17
4180 7991 1.055849 TTGTAGCTCTTGCCTGTGGA 58.944 50.000 0.00 0.00 40.80 4.02
4181 7992 1.279496 TGTAGCTCTTGCCTGTGGAT 58.721 50.000 0.00 0.00 40.80 3.41
4182 7993 1.065926 TGTAGCTCTTGCCTGTGGATG 60.066 52.381 0.00 0.00 40.80 3.51
4183 7994 1.208052 GTAGCTCTTGCCTGTGGATGA 59.792 52.381 0.00 0.00 40.80 2.92
4184 7995 0.252479 AGCTCTTGCCTGTGGATGAG 59.748 55.000 0.00 0.00 40.80 2.90
4185 7996 0.035630 GCTCTTGCCTGTGGATGAGT 60.036 55.000 0.00 0.00 0.00 3.41
4186 7997 2.011046 GCTCTTGCCTGTGGATGAGTC 61.011 57.143 0.00 0.00 0.00 3.36
4187 7998 0.247460 TCTTGCCTGTGGATGAGTCG 59.753 55.000 0.00 0.00 0.00 4.18
4188 7999 0.036952 CTTGCCTGTGGATGAGTCGT 60.037 55.000 0.00 0.00 0.00 4.34
4189 8000 0.396435 TTGCCTGTGGATGAGTCGTT 59.604 50.000 0.00 0.00 0.00 3.85
4190 8001 0.320683 TGCCTGTGGATGAGTCGTTG 60.321 55.000 0.00 0.00 0.00 4.10
4191 8002 1.639298 GCCTGTGGATGAGTCGTTGC 61.639 60.000 0.00 0.00 0.00 4.17
4192 8003 0.036952 CCTGTGGATGAGTCGTTGCT 60.037 55.000 0.00 0.00 0.00 3.91
4193 8004 1.609061 CCTGTGGATGAGTCGTTGCTT 60.609 52.381 0.00 0.00 0.00 3.91
4194 8005 1.728971 CTGTGGATGAGTCGTTGCTTC 59.271 52.381 0.00 0.00 0.00 3.86
4195 8006 0.716108 GTGGATGAGTCGTTGCTTCG 59.284 55.000 0.00 0.00 0.00 3.79
4196 8007 0.601057 TGGATGAGTCGTTGCTTCGA 59.399 50.000 0.23 0.23 37.51 3.71
4203 8014 2.611012 TCGTTGCTTCGACATTGCA 58.389 47.368 0.00 0.00 34.85 4.08
4204 8015 0.512518 TCGTTGCTTCGACATTGCAG 59.487 50.000 0.00 0.00 38.01 4.41
4205 8016 0.512518 CGTTGCTTCGACATTGCAGA 59.487 50.000 0.00 0.00 38.01 4.26
4206 8017 1.069973 CGTTGCTTCGACATTGCAGAA 60.070 47.619 0.00 0.00 38.01 3.02
4207 8018 2.310577 GTTGCTTCGACATTGCAGAAC 58.689 47.619 0.00 0.00 38.01 3.01
4208 8019 0.512518 TGCTTCGACATTGCAGAACG 59.487 50.000 0.00 0.00 32.55 3.95
4209 8020 0.790207 GCTTCGACATTGCAGAACGA 59.210 50.000 0.00 0.00 0.00 3.85
4210 8021 1.194547 GCTTCGACATTGCAGAACGAA 59.805 47.619 15.14 15.14 39.89 3.85
4213 8024 3.291809 TCGACATTGCAGAACGAAGTA 57.708 42.857 0.00 0.00 45.00 2.24
4214 8025 3.644823 TCGACATTGCAGAACGAAGTAA 58.355 40.909 0.00 0.00 45.00 2.24
4215 8026 4.052608 TCGACATTGCAGAACGAAGTAAA 58.947 39.130 0.00 0.00 45.00 2.01
4216 8027 4.688879 TCGACATTGCAGAACGAAGTAAAT 59.311 37.500 0.00 0.00 45.00 1.40
4217 8028 5.178623 TCGACATTGCAGAACGAAGTAAATT 59.821 36.000 0.00 0.00 45.00 1.82
4218 8029 5.281376 CGACATTGCAGAACGAAGTAAATTG 59.719 40.000 0.00 0.00 45.00 2.32
4219 8030 4.917415 ACATTGCAGAACGAAGTAAATTGC 59.083 37.500 0.00 0.00 45.00 3.56
4220 8031 4.560136 TTGCAGAACGAAGTAAATTGCA 57.440 36.364 0.00 0.00 45.00 4.08
4221 8032 4.145876 TGCAGAACGAAGTAAATTGCAG 57.854 40.909 0.00 0.00 45.00 4.41
4222 8033 3.812609 TGCAGAACGAAGTAAATTGCAGA 59.187 39.130 0.00 0.00 45.00 4.26
4223 8034 4.274705 TGCAGAACGAAGTAAATTGCAGAA 59.725 37.500 0.00 0.00 45.00 3.02
4224 8035 5.212194 GCAGAACGAAGTAAATTGCAGAAA 58.788 37.500 0.00 0.00 45.00 2.52
4225 8036 5.685511 GCAGAACGAAGTAAATTGCAGAAAA 59.314 36.000 0.00 0.00 45.00 2.29
4226 8037 6.345015 GCAGAACGAAGTAAATTGCAGAAAAC 60.345 38.462 0.00 0.00 45.00 2.43
4227 8038 6.142320 CAGAACGAAGTAAATTGCAGAAAACC 59.858 38.462 0.00 0.00 45.00 3.27
4228 8039 5.508200 ACGAAGTAAATTGCAGAAAACCA 57.492 34.783 0.00 0.00 41.94 3.67
4229 8040 5.278604 ACGAAGTAAATTGCAGAAAACCAC 58.721 37.500 0.00 0.00 41.94 4.16
4230 8041 4.679654 CGAAGTAAATTGCAGAAAACCACC 59.320 41.667 0.00 0.00 0.00 4.61
4231 8042 5.596845 GAAGTAAATTGCAGAAAACCACCA 58.403 37.500 0.00 0.00 0.00 4.17
4232 8043 4.944048 AGTAAATTGCAGAAAACCACCAC 58.056 39.130 0.00 0.00 0.00 4.16
4233 8044 4.649218 AGTAAATTGCAGAAAACCACCACT 59.351 37.500 0.00 0.00 0.00 4.00
4234 8045 4.486125 AAATTGCAGAAAACCACCACTT 57.514 36.364 0.00 0.00 0.00 3.16
4235 8046 4.486125 AATTGCAGAAAACCACCACTTT 57.514 36.364 0.00 0.00 0.00 2.66
4236 8047 3.971245 TTGCAGAAAACCACCACTTTT 57.029 38.095 0.00 0.00 0.00 2.27
4237 8048 3.244033 TGCAGAAAACCACCACTTTTG 57.756 42.857 0.00 0.00 0.00 2.44
4238 8049 2.828520 TGCAGAAAACCACCACTTTTGA 59.171 40.909 0.00 0.00 0.00 2.69
4239 8050 3.259374 TGCAGAAAACCACCACTTTTGAA 59.741 39.130 0.00 0.00 0.00 2.69
4240 8051 3.865164 GCAGAAAACCACCACTTTTGAAG 59.135 43.478 0.00 0.00 0.00 3.02
4241 8052 4.432712 CAGAAAACCACCACTTTTGAAGG 58.567 43.478 0.00 0.00 0.00 3.46
4242 8053 2.979814 AAACCACCACTTTTGAAGGC 57.020 45.000 0.00 0.00 0.00 4.35
4243 8054 1.859302 AACCACCACTTTTGAAGGCA 58.141 45.000 0.00 0.00 0.00 4.75
4244 8055 1.859302 ACCACCACTTTTGAAGGCAA 58.141 45.000 0.00 0.00 0.00 4.52
4245 8056 1.756538 ACCACCACTTTTGAAGGCAAG 59.243 47.619 0.00 0.00 35.04 4.01
4246 8057 1.538849 CCACCACTTTTGAAGGCAAGC 60.539 52.381 0.00 0.00 35.04 4.01
4247 8058 1.410153 CACCACTTTTGAAGGCAAGCT 59.590 47.619 0.00 0.00 35.04 3.74
4248 8059 2.110578 ACCACTTTTGAAGGCAAGCTT 58.889 42.857 0.00 0.00 35.04 3.74
4249 8060 2.501316 ACCACTTTTGAAGGCAAGCTTT 59.499 40.909 0.00 0.00 35.04 3.51
4250 8061 2.867975 CCACTTTTGAAGGCAAGCTTTG 59.132 45.455 0.00 0.00 35.04 2.77
4261 8072 2.208326 CAAGCTTTGCGAAAACCACT 57.792 45.000 0.00 0.00 0.00 4.00
4262 8073 3.347958 CAAGCTTTGCGAAAACCACTA 57.652 42.857 0.00 0.00 0.00 2.74
4263 8074 3.042887 CAAGCTTTGCGAAAACCACTAC 58.957 45.455 0.00 0.00 0.00 2.73
4264 8075 2.294074 AGCTTTGCGAAAACCACTACA 58.706 42.857 0.00 0.00 0.00 2.74
4265 8076 2.685897 AGCTTTGCGAAAACCACTACAA 59.314 40.909 0.00 0.00 0.00 2.41
4266 8077 3.317993 AGCTTTGCGAAAACCACTACAAT 59.682 39.130 0.00 0.00 0.00 2.71
4267 8078 4.517453 AGCTTTGCGAAAACCACTACAATA 59.483 37.500 0.00 0.00 0.00 1.90
4268 8079 4.615541 GCTTTGCGAAAACCACTACAATAC 59.384 41.667 0.00 0.00 0.00 1.89
4269 8080 5.752892 TTTGCGAAAACCACTACAATACA 57.247 34.783 0.00 0.00 0.00 2.29
4270 8081 5.950758 TTGCGAAAACCACTACAATACAT 57.049 34.783 0.00 0.00 0.00 2.29
4271 8082 5.539582 TGCGAAAACCACTACAATACATC 57.460 39.130 0.00 0.00 0.00 3.06
4272 8083 5.242434 TGCGAAAACCACTACAATACATCT 58.758 37.500 0.00 0.00 0.00 2.90
4273 8084 5.703592 TGCGAAAACCACTACAATACATCTT 59.296 36.000 0.00 0.00 0.00 2.40
4274 8085 6.205853 TGCGAAAACCACTACAATACATCTTT 59.794 34.615 0.00 0.00 0.00 2.52
4275 8086 7.081976 GCGAAAACCACTACAATACATCTTTT 58.918 34.615 0.00 0.00 0.00 2.27
4276 8087 7.593644 GCGAAAACCACTACAATACATCTTTTT 59.406 33.333 0.00 0.00 0.00 1.94
4311 8122 4.634991 CGTGTCTACGGTAATCTTTTTGC 58.365 43.478 0.00 0.00 46.23 3.68
4312 8123 4.150980 CGTGTCTACGGTAATCTTTTTGCA 59.849 41.667 0.00 0.00 46.23 4.08
4313 8124 5.618561 GTGTCTACGGTAATCTTTTTGCAG 58.381 41.667 0.00 0.00 0.00 4.41
4314 8125 5.407387 GTGTCTACGGTAATCTTTTTGCAGA 59.593 40.000 0.00 0.00 0.00 4.26
4315 8126 5.992829 TGTCTACGGTAATCTTTTTGCAGAA 59.007 36.000 0.00 0.00 0.00 3.02
4316 8127 6.483974 TGTCTACGGTAATCTTTTTGCAGAAA 59.516 34.615 2.07 2.07 0.00 2.52
4317 8128 7.015877 GTCTACGGTAATCTTTTTGCAGAAAG 58.984 38.462 20.73 20.73 37.85 2.62
4318 8129 4.546570 ACGGTAATCTTTTTGCAGAAAGC 58.453 39.130 21.68 9.88 45.96 3.51
4329 8140 0.368227 GCAGAAAGCACTGATCGACG 59.632 55.000 9.20 0.00 44.79 5.12
4330 8141 0.994995 CAGAAAGCACTGATCGACGG 59.005 55.000 0.00 0.00 39.94 4.79
4331 8142 0.888619 AGAAAGCACTGATCGACGGA 59.111 50.000 0.00 0.00 0.00 4.69
4332 8143 1.478510 AGAAAGCACTGATCGACGGAT 59.521 47.619 0.00 0.00 34.96 4.18
4342 8153 3.499050 CGACGGATCGGACTCAGT 58.501 61.111 7.35 0.00 44.99 3.41
4343 8154 1.801332 CGACGGATCGGACTCAGTT 59.199 57.895 7.35 0.00 44.99 3.16
4344 8155 1.012086 CGACGGATCGGACTCAGTTA 58.988 55.000 7.35 0.00 44.99 2.24
4345 8156 1.399440 CGACGGATCGGACTCAGTTAA 59.601 52.381 7.35 0.00 44.99 2.01
4346 8157 2.539142 CGACGGATCGGACTCAGTTAAG 60.539 54.545 7.35 0.00 44.99 1.85
4347 8158 1.134560 ACGGATCGGACTCAGTTAAGC 59.865 52.381 7.35 0.00 0.00 3.09
4348 8159 1.405821 CGGATCGGACTCAGTTAAGCT 59.594 52.381 0.00 0.00 0.00 3.74
4349 8160 2.159226 CGGATCGGACTCAGTTAAGCTT 60.159 50.000 3.48 3.48 0.00 3.74
4350 8161 3.190874 GGATCGGACTCAGTTAAGCTTG 58.809 50.000 9.86 0.00 0.00 4.01
4351 8162 3.368531 GGATCGGACTCAGTTAAGCTTGT 60.369 47.826 9.86 0.00 0.00 3.16
4352 8163 3.746045 TCGGACTCAGTTAAGCTTGTT 57.254 42.857 9.86 0.00 0.00 2.83
4353 8164 4.067972 TCGGACTCAGTTAAGCTTGTTT 57.932 40.909 9.86 0.00 0.00 2.83
4354 8165 5.204409 TCGGACTCAGTTAAGCTTGTTTA 57.796 39.130 9.86 0.00 0.00 2.01
4355 8166 5.790593 TCGGACTCAGTTAAGCTTGTTTAT 58.209 37.500 9.86 0.00 0.00 1.40
4356 8167 5.637810 TCGGACTCAGTTAAGCTTGTTTATG 59.362 40.000 9.86 1.05 0.00 1.90
4357 8168 5.637810 CGGACTCAGTTAAGCTTGTTTATGA 59.362 40.000 9.86 5.47 0.00 2.15
4358 8169 6.401153 CGGACTCAGTTAAGCTTGTTTATGAC 60.401 42.308 9.86 0.00 0.00 3.06
4359 8170 6.426937 GGACTCAGTTAAGCTTGTTTATGACA 59.573 38.462 9.86 0.00 36.19 3.58
4360 8171 7.360438 GGACTCAGTTAAGCTTGTTTATGACAG 60.360 40.741 9.86 0.00 39.94 3.51
4361 8172 6.428159 ACTCAGTTAAGCTTGTTTATGACAGG 59.572 38.462 9.86 0.00 39.94 4.00
4366 8177 1.094785 CTTGTTTATGACAGGCGGGG 58.905 55.000 0.00 0.00 39.94 5.73
4367 8178 0.963355 TTGTTTATGACAGGCGGGGC 60.963 55.000 0.00 0.00 39.94 5.80
4389 8200 2.580867 TTTTTGCGCACGTGGCAC 60.581 55.556 24.98 7.79 45.17 5.01
4390 8201 4.560856 TTTTGCGCACGTGGCACC 62.561 61.111 24.98 6.08 45.17 5.01
4413 8224 3.751246 CCGTCCCGACAGCCGTTA 61.751 66.667 0.00 0.00 36.31 3.18
4414 8225 2.202570 CGTCCCGACAGCCGTTAG 60.203 66.667 0.00 0.00 36.31 2.34
4415 8226 2.693762 CGTCCCGACAGCCGTTAGA 61.694 63.158 0.00 0.00 36.31 2.10
4416 8227 1.153881 GTCCCGACAGCCGTTAGAC 60.154 63.158 0.00 0.00 36.31 2.59
4417 8228 2.202570 CCCGACAGCCGTTAGACG 60.203 66.667 0.00 0.00 42.11 4.18
4445 8256 4.176752 GTGCCGTCCCCCTCCATC 62.177 72.222 0.00 0.00 0.00 3.51
4450 8261 4.448340 GTCCCCCTCCATCCCCCA 62.448 72.222 0.00 0.00 0.00 4.96
4451 8262 3.394792 TCCCCCTCCATCCCCCAT 61.395 66.667 0.00 0.00 0.00 4.00
4452 8263 2.860971 CCCCCTCCATCCCCCATC 60.861 72.222 0.00 0.00 0.00 3.51
4453 8264 2.295365 CCCCTCCATCCCCCATCT 59.705 66.667 0.00 0.00 0.00 2.90
4454 8265 2.158810 CCCCTCCATCCCCCATCTG 61.159 68.421 0.00 0.00 0.00 2.90
4455 8266 1.386485 CCCTCCATCCCCCATCTGT 60.386 63.158 0.00 0.00 0.00 3.41
4456 8267 0.995675 CCCTCCATCCCCCATCTGTT 60.996 60.000 0.00 0.00 0.00 3.16
4457 8268 0.475906 CCTCCATCCCCCATCTGTTC 59.524 60.000 0.00 0.00 0.00 3.18
4458 8269 0.107456 CTCCATCCCCCATCTGTTCG 59.893 60.000 0.00 0.00 0.00 3.95
4459 8270 0.620410 TCCATCCCCCATCTGTTCGT 60.620 55.000 0.00 0.00 0.00 3.85
4460 8271 0.255890 CCATCCCCCATCTGTTCGTT 59.744 55.000 0.00 0.00 0.00 3.85
4461 8272 1.340991 CCATCCCCCATCTGTTCGTTT 60.341 52.381 0.00 0.00 0.00 3.60
4462 8273 2.017049 CATCCCCCATCTGTTCGTTTC 58.983 52.381 0.00 0.00 0.00 2.78
4463 8274 1.358152 TCCCCCATCTGTTCGTTTCT 58.642 50.000 0.00 0.00 0.00 2.52
4464 8275 1.278127 TCCCCCATCTGTTCGTTTCTC 59.722 52.381 0.00 0.00 0.00 2.87
4465 8276 1.679032 CCCCCATCTGTTCGTTTCTCC 60.679 57.143 0.00 0.00 0.00 3.71
4466 8277 1.679032 CCCCATCTGTTCGTTTCTCCC 60.679 57.143 0.00 0.00 0.00 4.30
4467 8278 1.679032 CCCATCTGTTCGTTTCTCCCC 60.679 57.143 0.00 0.00 0.00 4.81
4468 8279 1.679032 CCATCTGTTCGTTTCTCCCCC 60.679 57.143 0.00 0.00 0.00 5.40
4469 8280 1.279271 CATCTGTTCGTTTCTCCCCCT 59.721 52.381 0.00 0.00 0.00 4.79
4470 8281 1.430992 TCTGTTCGTTTCTCCCCCTT 58.569 50.000 0.00 0.00 0.00 3.95
4471 8282 1.772453 TCTGTTCGTTTCTCCCCCTTT 59.228 47.619 0.00 0.00 0.00 3.11
4472 8283 2.173996 TCTGTTCGTTTCTCCCCCTTTT 59.826 45.455 0.00 0.00 0.00 2.27
4473 8284 2.552743 CTGTTCGTTTCTCCCCCTTTTC 59.447 50.000 0.00 0.00 0.00 2.29
4474 8285 2.173996 TGTTCGTTTCTCCCCCTTTTCT 59.826 45.455 0.00 0.00 0.00 2.52
4475 8286 2.812591 GTTCGTTTCTCCCCCTTTTCTC 59.187 50.000 0.00 0.00 0.00 2.87
4476 8287 1.350019 TCGTTTCTCCCCCTTTTCTCC 59.650 52.381 0.00 0.00 0.00 3.71
4477 8288 1.351350 CGTTTCTCCCCCTTTTCTCCT 59.649 52.381 0.00 0.00 0.00 3.69
4478 8289 2.796557 GTTTCTCCCCCTTTTCTCCTG 58.203 52.381 0.00 0.00 0.00 3.86
4479 8290 2.108425 GTTTCTCCCCCTTTTCTCCTGT 59.892 50.000 0.00 0.00 0.00 4.00
4480 8291 1.657804 TCTCCCCCTTTTCTCCTGTC 58.342 55.000 0.00 0.00 0.00 3.51
4481 8292 0.250513 CTCCCCCTTTTCTCCTGTCG 59.749 60.000 0.00 0.00 0.00 4.35
4482 8293 1.377333 CCCCCTTTTCTCCTGTCGC 60.377 63.158 0.00 0.00 0.00 5.19
4483 8294 1.377333 CCCCTTTTCTCCTGTCGCC 60.377 63.158 0.00 0.00 0.00 5.54
4484 8295 1.741770 CCCTTTTCTCCTGTCGCCG 60.742 63.158 0.00 0.00 0.00 6.46
4485 8296 2.391389 CCTTTTCTCCTGTCGCCGC 61.391 63.158 0.00 0.00 0.00 6.53
4486 8297 1.374758 CTTTTCTCCTGTCGCCGCT 60.375 57.895 0.00 0.00 0.00 5.52
4487 8298 1.630244 CTTTTCTCCTGTCGCCGCTG 61.630 60.000 0.00 0.00 0.00 5.18
4488 8299 2.377628 TTTTCTCCTGTCGCCGCTGT 62.378 55.000 0.00 0.00 0.00 4.40
4489 8300 2.765250 TTTCTCCTGTCGCCGCTGTC 62.765 60.000 0.00 0.00 0.00 3.51
4490 8301 3.753434 CTCCTGTCGCCGCTGTCT 61.753 66.667 0.00 0.00 0.00 3.41
4491 8302 3.691744 CTCCTGTCGCCGCTGTCTC 62.692 68.421 0.00 0.00 0.00 3.36
4492 8303 4.803426 CCTGTCGCCGCTGTCTCC 62.803 72.222 0.00 0.00 0.00 3.71
4493 8304 4.803426 CTGTCGCCGCTGTCTCCC 62.803 72.222 0.00 0.00 0.00 4.30
4499 8310 3.151022 CCGCTGTCTCCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
4500 8311 3.522731 CGCTGTCTCCCCTCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
4501 8312 3.844090 GCTGTCTCCCCTCCTCGC 61.844 72.222 0.00 0.00 0.00 5.03
4502 8313 3.522731 CTGTCTCCCCTCCTCGCG 61.523 72.222 0.00 0.00 0.00 5.87
4503 8314 4.361971 TGTCTCCCCTCCTCGCGT 62.362 66.667 5.77 0.00 0.00 6.01
4504 8315 3.519930 GTCTCCCCTCCTCGCGTC 61.520 72.222 5.77 0.00 0.00 5.19
4505 8316 3.729489 TCTCCCCTCCTCGCGTCT 61.729 66.667 5.77 0.00 0.00 4.18
4506 8317 3.522731 CTCCCCTCCTCGCGTCTG 61.523 72.222 5.77 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.252346 GGCATGGCAGAGCTCATCG 61.252 63.158 17.77 4.91 0.00 3.84
2 3 2.203167 CGGCATGGCAGAGCTCAT 60.203 61.111 20.37 0.00 0.00 2.90
4 5 2.894387 GACGGCATGGCAGAGCTC 60.894 66.667 20.37 5.27 0.00 4.09
5 6 4.827087 CGACGGCATGGCAGAGCT 62.827 66.667 20.37 0.00 0.00 4.09
22 23 3.119096 GAGTTTCCGGCGGTCTGC 61.119 66.667 27.32 14.38 45.38 4.26
23 24 2.434359 GGAGTTTCCGGCGGTCTG 60.434 66.667 27.32 0.00 0.00 3.51
32 33 4.717313 AAGGGCGGCGGAGTTTCC 62.717 66.667 9.78 0.00 0.00 3.13
33 34 3.125573 GAAGGGCGGCGGAGTTTC 61.126 66.667 9.78 0.00 0.00 2.78
44 45 3.056313 GCAGGTTGATGCGAAGGGC 62.056 63.158 0.00 0.00 43.96 5.19
45 46 3.190878 GCAGGTTGATGCGAAGGG 58.809 61.111 0.00 0.00 36.28 3.95
51 52 0.682209 ACCATGGAGCAGGTTGATGC 60.682 55.000 21.47 0.00 46.88 3.91
52 53 1.386533 GACCATGGAGCAGGTTGATG 58.613 55.000 21.47 0.00 38.50 3.07
53 54 0.257039 GGACCATGGAGCAGGTTGAT 59.743 55.000 21.47 0.00 38.50 2.57
55 56 1.746615 CGGACCATGGAGCAGGTTG 60.747 63.158 21.47 0.00 38.50 3.77
56 57 1.274703 ATCGGACCATGGAGCAGGTT 61.275 55.000 21.47 0.00 38.50 3.50
67 68 1.320344 CGAGGTGAAGGATCGGACCA 61.320 60.000 0.00 0.00 32.93 4.02
68 69 1.437986 CGAGGTGAAGGATCGGACC 59.562 63.158 0.00 0.00 32.93 4.46
81 82 1.002274 AGGAGAAGGATGGCGAGGT 59.998 57.895 0.00 0.00 0.00 3.85
82 83 1.745264 GAGGAGAAGGATGGCGAGG 59.255 63.158 0.00 0.00 0.00 4.63
84 85 2.786495 GCGAGGAGAAGGATGGCGA 61.786 63.158 0.00 0.00 0.00 5.54
95 96 1.079503 GGCTTGTTGTTAGCGAGGAG 58.920 55.000 0.00 0.00 39.54 3.69
101 102 1.971695 AGGCCGGCTTGTTGTTAGC 60.972 57.895 28.56 4.97 37.91 3.09
106 107 3.741476 GAGCAGGCCGGCTTGTTG 61.741 66.667 35.37 23.74 45.99 3.33
110 111 4.729918 CTTGGAGCAGGCCGGCTT 62.730 66.667 31.46 18.19 45.99 4.35
176 190 0.391661 GATGCGGACCTTTGAGCAGA 60.392 55.000 0.00 0.00 43.20 4.26
183 331 1.208165 AGGGGAAGATGCGGACCTTT 61.208 55.000 0.00 0.00 0.00 3.11
193 341 3.734344 AAGGGATGTAGAGGGGAAGAT 57.266 47.619 0.00 0.00 0.00 2.40
272 423 2.294074 CCACCCACCCATTTATACACG 58.706 52.381 0.00 0.00 0.00 4.49
286 480 2.756400 GACTGCATCACCCACCCA 59.244 61.111 0.00 0.00 0.00 4.51
289 483 1.377725 CCTGGACTGCATCACCCAC 60.378 63.158 0.00 0.00 0.00 4.61
333 529 5.280368 GGAGAAATAGAGCCATGGATCATGA 60.280 44.000 30.59 16.22 43.81 3.07
350 546 2.158900 AGGCAATCGATCGTGGAGAAAT 60.159 45.455 15.94 0.00 0.00 2.17
363 559 1.208052 TCTCAGGAAAGGAGGCAATCG 59.792 52.381 0.00 0.00 33.18 3.34
366 563 1.340405 GCATCTCAGGAAAGGAGGCAA 60.340 52.381 0.00 0.00 36.87 4.52
376 573 1.065551 CGTGTATCGTGCATCTCAGGA 59.934 52.381 0.00 0.00 42.90 3.86
390 587 1.808411 CTGCCAAGAACACCGTGTAT 58.192 50.000 4.17 0.00 0.00 2.29
521 727 1.651987 CAAACACCTCACACACTCGT 58.348 50.000 0.00 0.00 0.00 4.18
522 728 0.937304 CCAAACACCTCACACACTCG 59.063 55.000 0.00 0.00 0.00 4.18
523 729 1.308998 CCCAAACACCTCACACACTC 58.691 55.000 0.00 0.00 0.00 3.51
524 730 0.106719 CCCCAAACACCTCACACACT 60.107 55.000 0.00 0.00 0.00 3.55
528 734 2.870175 CAATACCCCAAACACCTCACA 58.130 47.619 0.00 0.00 0.00 3.58
559 765 1.028905 CCTTCTCAACGGCCACAAAA 58.971 50.000 2.24 0.00 0.00 2.44
594 800 1.312815 GCAGATGCGGGCTAAAGATT 58.687 50.000 0.00 0.00 0.00 2.40
722 958 8.506140 AAATCAATAAATGCACACGTATATGC 57.494 30.769 10.76 10.76 42.40 3.14
801 1037 5.986135 GCAAATGTTATGTAACCAACACCAA 59.014 36.000 0.82 0.00 42.09 3.67
802 1038 5.303078 AGCAAATGTTATGTAACCAACACCA 59.697 36.000 0.82 0.00 42.09 4.17
803 1039 5.778862 AGCAAATGTTATGTAACCAACACC 58.221 37.500 0.82 0.00 42.09 4.16
804 1040 5.861787 GGAGCAAATGTTATGTAACCAACAC 59.138 40.000 0.82 0.00 42.09 3.32
805 1041 5.772672 AGGAGCAAATGTTATGTAACCAACA 59.227 36.000 0.82 0.00 43.86 3.33
806 1042 6.151144 AGAGGAGCAAATGTTATGTAACCAAC 59.849 38.462 0.82 0.00 35.37 3.77
877 1468 4.515567 AGCAACTAACTAGCCAAGAAACAC 59.484 41.667 0.00 0.00 0.00 3.32
931 1523 1.486310 AGCAAGACAGTGGACTGACAA 59.514 47.619 13.74 0.00 46.59 3.18
997 1594 2.352715 CGTCTGAACTGCACTCCATACA 60.353 50.000 0.00 0.00 0.00 2.29
1113 1742 3.833070 AGAACGGACATCTAAACCTGTCT 59.167 43.478 3.06 0.00 41.21 3.41
1272 1901 2.816958 AACGAGCCTGCTGCATCG 60.817 61.111 19.16 19.16 44.83 3.84
1650 2279 3.282021 GCCAACTGGATCATCTGCTTTA 58.718 45.455 0.00 0.00 37.39 1.85
1722 2351 0.534412 CAGTCTTGCGGGACATCTCT 59.466 55.000 10.68 0.00 38.57 3.10
1779 2408 4.999950 AGTTCCATCAAGTACTTGCTCTTG 59.000 41.667 27.49 20.21 40.24 3.02
1903 2978 4.573607 TCATACAGCAATTGCATGAGACTC 59.426 41.667 30.89 0.00 45.16 3.36
2244 3331 7.285401 AGAGTCAAATTTTAGACCAAGAAAGCA 59.715 33.333 5.32 0.00 35.38 3.91
2308 4917 0.664166 CACCACAAGCATGCCGAAAC 60.664 55.000 15.66 0.00 0.00 2.78
2312 4921 1.028330 AGATCACCACAAGCATGCCG 61.028 55.000 15.66 8.79 0.00 5.69
2552 5163 6.764308 AATGAATTTGACATGTCAGGGTAG 57.236 37.500 26.48 0.00 41.13 3.18
2679 5290 1.968540 GTGCTTCACCACCTCCAGC 60.969 63.158 0.00 0.00 0.00 4.85
2745 5356 6.865726 CGTCAATTCTATCCTGTAGATCCTTG 59.134 42.308 0.00 0.00 36.33 3.61
2766 5377 0.321564 CCAGGTCTTCCATTGCGTCA 60.322 55.000 0.00 0.00 35.89 4.35
2870 5481 2.772077 ATGCGTGGGTGTATGTAACA 57.228 45.000 0.00 0.00 35.06 2.41
2881 5495 0.796312 GACAAGTGTGTATGCGTGGG 59.204 55.000 0.00 0.00 38.41 4.61
2882 5496 0.796312 GGACAAGTGTGTATGCGTGG 59.204 55.000 0.00 0.00 38.41 4.94
2883 5497 1.726791 GAGGACAAGTGTGTATGCGTG 59.273 52.381 0.00 0.00 38.41 5.34
2884 5498 1.337823 GGAGGACAAGTGTGTATGCGT 60.338 52.381 0.00 0.00 38.41 5.24
2889 5503 4.652421 ACTGTTAAGGAGGACAAGTGTGTA 59.348 41.667 0.00 0.00 38.41 2.90
2900 5514 6.364976 CCGCAAAATAAAAACTGTTAAGGAGG 59.635 38.462 0.00 0.00 0.00 4.30
2904 5518 5.463724 TGCCCGCAAAATAAAAACTGTTAAG 59.536 36.000 0.00 0.00 0.00 1.85
3162 5780 3.640029 TCGTACCTCAGACTTTTCACCTT 59.360 43.478 0.00 0.00 0.00 3.50
3193 5811 5.298777 GGCAGCAAGATAAGAATCACTTCAT 59.701 40.000 0.00 0.00 39.72 2.57
3196 5814 4.853007 AGGCAGCAAGATAAGAATCACTT 58.147 39.130 0.00 0.00 42.04 3.16
3230 5848 4.465632 TGTACTTGTCACAAGTGTCTGT 57.534 40.909 29.96 8.16 0.00 3.41
3233 5851 6.073276 TGCATTATGTACTTGTCACAAGTGTC 60.073 38.462 29.96 22.11 0.00 3.67
3235 5853 6.239908 TGCATTATGTACTTGTCACAAGTG 57.760 37.500 29.96 14.31 0.00 3.16
3551 7329 4.636206 ACAGTTTGTCAAGTCTTCTCCAAC 59.364 41.667 0.00 0.00 0.00 3.77
3661 7445 1.068474 CTGCCAACTACGAACGGAAG 58.932 55.000 0.00 0.00 0.00 3.46
3705 7489 3.601443 AGAACCAATCACGAGGAAGAG 57.399 47.619 0.00 0.00 0.00 2.85
3745 7529 9.868277 AAAACACACTCAAGAATGACAATAAAA 57.132 25.926 0.00 0.00 0.00 1.52
3822 7619 4.867047 CACATCTTCGAACTTAGAGCACAT 59.133 41.667 0.00 0.00 0.00 3.21
3836 7634 4.472691 AACATTGACACACACATCTTCG 57.527 40.909 0.00 0.00 0.00 3.79
3878 7687 3.389925 AAACCACATGTGCCAAATGAG 57.610 42.857 20.81 6.62 0.00 2.90
3926 7735 1.953686 GACCAGCCAAAAGTTGCACTA 59.046 47.619 0.00 0.00 0.00 2.74
3929 7738 1.732917 CGACCAGCCAAAAGTTGCA 59.267 52.632 0.00 0.00 0.00 4.08
3930 7739 1.661509 GCGACCAGCCAAAAGTTGC 60.662 57.895 0.00 0.00 40.81 4.17
3960 7769 0.653636 GACAAAGGACAACGCAACGA 59.346 50.000 0.00 0.00 0.00 3.85
3975 7784 0.682852 ATCCGACGGTTGAAGGACAA 59.317 50.000 14.79 0.00 35.36 3.18
3976 7785 0.682852 AATCCGACGGTTGAAGGACA 59.317 50.000 14.79 0.00 35.36 4.02
3982 7791 0.974010 AGCCCTAATCCGACGGTTGA 60.974 55.000 14.79 0.00 0.00 3.18
4017 7826 0.466555 TGGGGAAAAGACAACCACGG 60.467 55.000 0.00 0.00 0.00 4.94
4023 7832 3.645212 TGCATGATTTGGGGAAAAGACAA 59.355 39.130 0.00 0.00 0.00 3.18
4027 7836 3.337358 GGTTGCATGATTTGGGGAAAAG 58.663 45.455 0.00 0.00 0.00 2.27
4032 7841 0.108709 CACGGTTGCATGATTTGGGG 60.109 55.000 0.00 0.00 0.00 4.96
4052 7861 2.164624 CTGTCACTCTTTCCCTCCTACG 59.835 54.545 0.00 0.00 0.00 3.51
4093 7904 4.082523 ACGTCCATGGCTGGGTCG 62.083 66.667 6.96 11.44 43.34 4.79
4095 7906 2.927856 TCACGTCCATGGCTGGGT 60.928 61.111 6.96 0.00 43.34 4.51
4100 7911 4.101448 AGGCCTCACGTCCATGGC 62.101 66.667 6.96 0.96 44.22 4.40
4109 7920 0.798776 CATCAACAACGAGGCCTCAC 59.201 55.000 31.67 7.55 0.00 3.51
4110 7921 0.684535 TCATCAACAACGAGGCCTCA 59.315 50.000 31.67 11.45 0.00 3.86
4127 7938 1.438651 GCGAGGTTGCAAGTACATCA 58.561 50.000 0.00 0.00 34.15 3.07
4128 7939 0.727398 GGCGAGGTTGCAAGTACATC 59.273 55.000 0.00 0.00 36.28 3.06
4129 7940 0.036164 TGGCGAGGTTGCAAGTACAT 59.964 50.000 0.00 0.00 36.28 2.29
4130 7941 0.036164 ATGGCGAGGTTGCAAGTACA 59.964 50.000 0.00 0.00 36.28 2.90
4131 7942 0.727398 GATGGCGAGGTTGCAAGTAC 59.273 55.000 0.00 0.00 36.28 2.73
4132 7943 0.323302 TGATGGCGAGGTTGCAAGTA 59.677 50.000 0.00 0.00 36.28 2.24
4133 7944 1.073025 TGATGGCGAGGTTGCAAGT 59.927 52.632 0.00 0.00 36.28 3.16
4134 7945 1.236616 TGTGATGGCGAGGTTGCAAG 61.237 55.000 0.00 0.00 36.28 4.01
4135 7946 0.821301 TTGTGATGGCGAGGTTGCAA 60.821 50.000 0.00 0.00 36.28 4.08
4136 7947 1.228094 TTGTGATGGCGAGGTTGCA 60.228 52.632 0.00 0.00 36.28 4.08
4137 7948 1.210155 GTTGTGATGGCGAGGTTGC 59.790 57.895 0.00 0.00 0.00 4.17
4138 7949 0.606401 AGGTTGTGATGGCGAGGTTG 60.606 55.000 0.00 0.00 0.00 3.77
4139 7950 0.110486 AAGGTTGTGATGGCGAGGTT 59.890 50.000 0.00 0.00 0.00 3.50
4140 7951 0.606401 CAAGGTTGTGATGGCGAGGT 60.606 55.000 0.00 0.00 0.00 3.85
4141 7952 0.606401 ACAAGGTTGTGATGGCGAGG 60.606 55.000 0.00 0.00 40.49 4.63
4142 7953 1.238439 AACAAGGTTGTGATGGCGAG 58.762 50.000 0.00 0.00 41.31 5.03
4143 7954 1.336440 CAAACAAGGTTGTGATGGCGA 59.664 47.619 0.00 0.00 41.31 5.54
4144 7955 1.066908 ACAAACAAGGTTGTGATGGCG 59.933 47.619 2.14 0.00 41.31 5.69
4145 7956 2.888834 ACAAACAAGGTTGTGATGGC 57.111 45.000 2.14 0.00 41.31 4.40
4146 7957 3.569701 AGCTACAAACAAGGTTGTGATGG 59.430 43.478 13.43 3.05 41.75 3.51
4147 7958 4.516698 AGAGCTACAAACAAGGTTGTGATG 59.483 41.667 13.43 3.62 41.75 3.07
4148 7959 4.718961 AGAGCTACAAACAAGGTTGTGAT 58.281 39.130 13.43 2.79 41.75 3.06
4149 7960 4.150897 AGAGCTACAAACAAGGTTGTGA 57.849 40.909 13.43 0.00 41.75 3.58
4150 7961 4.601019 CAAGAGCTACAAACAAGGTTGTG 58.399 43.478 13.43 5.17 41.75 3.33
4151 7962 3.066760 GCAAGAGCTACAAACAAGGTTGT 59.933 43.478 8.69 8.69 43.95 3.32
4152 7963 3.550842 GGCAAGAGCTACAAACAAGGTTG 60.551 47.826 0.00 0.00 41.70 3.77
4153 7964 2.623416 GGCAAGAGCTACAAACAAGGTT 59.377 45.455 0.00 0.00 41.70 3.50
4154 7965 2.158608 AGGCAAGAGCTACAAACAAGGT 60.159 45.455 0.00 0.00 41.70 3.50
4155 7966 2.227388 CAGGCAAGAGCTACAAACAAGG 59.773 50.000 0.00 0.00 41.70 3.61
4156 7967 2.880890 ACAGGCAAGAGCTACAAACAAG 59.119 45.455 0.00 0.00 41.70 3.16
4157 7968 2.618241 CACAGGCAAGAGCTACAAACAA 59.382 45.455 0.00 0.00 41.70 2.83
4158 7969 2.221169 CACAGGCAAGAGCTACAAACA 58.779 47.619 0.00 0.00 41.70 2.83
4159 7970 1.537202 CCACAGGCAAGAGCTACAAAC 59.463 52.381 0.00 0.00 41.70 2.93
4160 7971 1.419762 TCCACAGGCAAGAGCTACAAA 59.580 47.619 0.00 0.00 41.70 2.83
4161 7972 1.055849 TCCACAGGCAAGAGCTACAA 58.944 50.000 0.00 0.00 41.70 2.41
4162 7973 1.065926 CATCCACAGGCAAGAGCTACA 60.066 52.381 0.00 0.00 41.70 2.74
4163 7974 1.208052 TCATCCACAGGCAAGAGCTAC 59.792 52.381 0.00 0.00 41.70 3.58
4164 7975 1.483827 CTCATCCACAGGCAAGAGCTA 59.516 52.381 0.00 0.00 41.70 3.32
4165 7976 0.252479 CTCATCCACAGGCAAGAGCT 59.748 55.000 0.00 0.00 41.70 4.09
4166 7977 0.035630 ACTCATCCACAGGCAAGAGC 60.036 55.000 0.00 0.00 41.10 4.09
4167 7978 1.738365 CGACTCATCCACAGGCAAGAG 60.738 57.143 0.00 0.00 0.00 2.85
4168 7979 0.247460 CGACTCATCCACAGGCAAGA 59.753 55.000 0.00 0.00 0.00 3.02
4169 7980 0.036952 ACGACTCATCCACAGGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
4170 7981 0.396435 AACGACTCATCCACAGGCAA 59.604 50.000 0.00 0.00 0.00 4.52
4171 7982 0.320683 CAACGACTCATCCACAGGCA 60.321 55.000 0.00 0.00 0.00 4.75
4172 7983 1.639298 GCAACGACTCATCCACAGGC 61.639 60.000 0.00 0.00 0.00 4.85
4173 7984 0.036952 AGCAACGACTCATCCACAGG 60.037 55.000 0.00 0.00 0.00 4.00
4174 7985 1.728971 GAAGCAACGACTCATCCACAG 59.271 52.381 0.00 0.00 0.00 3.66
4175 7986 1.795768 GAAGCAACGACTCATCCACA 58.204 50.000 0.00 0.00 0.00 4.17
4176 7987 0.716108 CGAAGCAACGACTCATCCAC 59.284 55.000 0.00 0.00 35.09 4.02
4177 7988 0.601057 TCGAAGCAACGACTCATCCA 59.399 50.000 0.00 0.00 37.37 3.41
4178 7989 3.418675 TCGAAGCAACGACTCATCC 57.581 52.632 0.00 0.00 37.37 3.51
4185 7996 0.512518 CTGCAATGTCGAAGCAACGA 59.487 50.000 0.00 1.37 37.89 3.85
4186 7997 0.512518 TCTGCAATGTCGAAGCAACG 59.487 50.000 4.94 0.00 37.89 4.10
4187 7998 2.310577 GTTCTGCAATGTCGAAGCAAC 58.689 47.619 4.94 0.00 37.89 4.17
4188 7999 1.069973 CGTTCTGCAATGTCGAAGCAA 60.070 47.619 4.94 0.00 37.89 3.91
4189 8000 0.512518 CGTTCTGCAATGTCGAAGCA 59.487 50.000 0.00 0.00 36.72 3.91
4190 8001 0.790207 TCGTTCTGCAATGTCGAAGC 59.210 50.000 0.00 0.00 0.00 3.86
4191 8002 3.095685 CTTCGTTCTGCAATGTCGAAG 57.904 47.619 20.00 20.00 46.49 3.79
4192 8003 2.479837 ACTTCGTTCTGCAATGTCGAA 58.520 42.857 12.50 12.50 38.48 3.71
4193 8004 2.148916 ACTTCGTTCTGCAATGTCGA 57.851 45.000 0.00 0.00 0.00 4.20
4194 8005 4.383774 TTTACTTCGTTCTGCAATGTCG 57.616 40.909 0.00 0.00 0.00 4.35
4195 8006 5.059710 GCAATTTACTTCGTTCTGCAATGTC 59.940 40.000 0.00 0.00 0.00 3.06
4196 8007 4.917415 GCAATTTACTTCGTTCTGCAATGT 59.083 37.500 0.00 0.00 0.00 2.71
4197 8008 4.916831 TGCAATTTACTTCGTTCTGCAATG 59.083 37.500 0.00 0.00 35.53 2.82
4198 8009 5.048782 TCTGCAATTTACTTCGTTCTGCAAT 60.049 36.000 0.00 0.00 37.82 3.56
4199 8010 4.274705 TCTGCAATTTACTTCGTTCTGCAA 59.725 37.500 0.00 0.00 37.82 4.08
4200 8011 3.812609 TCTGCAATTTACTTCGTTCTGCA 59.187 39.130 0.00 0.00 36.88 4.41
4201 8012 4.404507 TCTGCAATTTACTTCGTTCTGC 57.595 40.909 0.00 0.00 0.00 4.26
4202 8013 6.142320 GGTTTTCTGCAATTTACTTCGTTCTG 59.858 38.462 0.00 0.00 0.00 3.02
4203 8014 6.183360 TGGTTTTCTGCAATTTACTTCGTTCT 60.183 34.615 0.00 0.00 0.00 3.01
4204 8015 5.974751 TGGTTTTCTGCAATTTACTTCGTTC 59.025 36.000 0.00 0.00 0.00 3.95
4205 8016 5.746721 GTGGTTTTCTGCAATTTACTTCGTT 59.253 36.000 0.00 0.00 0.00 3.85
4206 8017 5.278604 GTGGTTTTCTGCAATTTACTTCGT 58.721 37.500 0.00 0.00 0.00 3.85
4207 8018 4.679654 GGTGGTTTTCTGCAATTTACTTCG 59.320 41.667 0.00 0.00 0.00 3.79
4208 8019 5.462068 GTGGTGGTTTTCTGCAATTTACTTC 59.538 40.000 0.00 0.00 0.00 3.01
4209 8020 5.128663 AGTGGTGGTTTTCTGCAATTTACTT 59.871 36.000 0.00 0.00 0.00 2.24
4210 8021 4.649218 AGTGGTGGTTTTCTGCAATTTACT 59.351 37.500 0.00 0.00 0.00 2.24
4211 8022 4.944048 AGTGGTGGTTTTCTGCAATTTAC 58.056 39.130 0.00 0.00 0.00 2.01
4212 8023 5.606348 AAGTGGTGGTTTTCTGCAATTTA 57.394 34.783 0.00 0.00 0.00 1.40
4213 8024 4.486125 AAGTGGTGGTTTTCTGCAATTT 57.514 36.364 0.00 0.00 0.00 1.82
4214 8025 4.486125 AAAGTGGTGGTTTTCTGCAATT 57.514 36.364 0.00 0.00 0.00 2.32
4215 8026 4.081198 TCAAAAGTGGTGGTTTTCTGCAAT 60.081 37.500 0.00 0.00 0.00 3.56
4216 8027 3.259374 TCAAAAGTGGTGGTTTTCTGCAA 59.741 39.130 0.00 0.00 0.00 4.08
4217 8028 2.828520 TCAAAAGTGGTGGTTTTCTGCA 59.171 40.909 0.00 0.00 0.00 4.41
4218 8029 3.518634 TCAAAAGTGGTGGTTTTCTGC 57.481 42.857 0.00 0.00 0.00 4.26
4219 8030 4.432712 CCTTCAAAAGTGGTGGTTTTCTG 58.567 43.478 0.00 0.00 0.00 3.02
4220 8031 3.118775 GCCTTCAAAAGTGGTGGTTTTCT 60.119 43.478 0.00 0.00 0.00 2.52
4221 8032 3.194861 GCCTTCAAAAGTGGTGGTTTTC 58.805 45.455 0.00 0.00 0.00 2.29
4222 8033 2.569404 TGCCTTCAAAAGTGGTGGTTTT 59.431 40.909 0.00 0.00 0.00 2.43
4223 8034 2.183679 TGCCTTCAAAAGTGGTGGTTT 58.816 42.857 0.00 0.00 0.00 3.27
4224 8035 1.859302 TGCCTTCAAAAGTGGTGGTT 58.141 45.000 0.00 0.00 0.00 3.67
4225 8036 1.756538 CTTGCCTTCAAAAGTGGTGGT 59.243 47.619 0.00 0.00 0.00 4.16
4226 8037 1.538849 GCTTGCCTTCAAAAGTGGTGG 60.539 52.381 0.00 0.00 0.00 4.61
4227 8038 1.410153 AGCTTGCCTTCAAAAGTGGTG 59.590 47.619 0.00 0.00 0.00 4.17
4228 8039 1.780503 AGCTTGCCTTCAAAAGTGGT 58.219 45.000 0.00 0.00 0.00 4.16
4229 8040 2.867975 CAAAGCTTGCCTTCAAAAGTGG 59.132 45.455 0.00 0.00 31.99 4.00
4242 8053 2.208326 AGTGGTTTTCGCAAAGCTTG 57.792 45.000 10.86 0.00 40.47 4.01
4243 8054 2.685897 TGTAGTGGTTTTCGCAAAGCTT 59.314 40.909 10.86 0.00 40.47 3.74
4244 8055 2.294074 TGTAGTGGTTTTCGCAAAGCT 58.706 42.857 10.86 0.00 40.47 3.74
4245 8056 2.766970 TGTAGTGGTTTTCGCAAAGC 57.233 45.000 2.68 2.68 40.28 3.51
4246 8057 5.753744 TGTATTGTAGTGGTTTTCGCAAAG 58.246 37.500 0.00 0.00 0.00 2.77
4247 8058 5.752892 TGTATTGTAGTGGTTTTCGCAAA 57.247 34.783 0.00 0.00 0.00 3.68
4248 8059 5.703592 AGATGTATTGTAGTGGTTTTCGCAA 59.296 36.000 0.00 0.00 0.00 4.85
4249 8060 5.242434 AGATGTATTGTAGTGGTTTTCGCA 58.758 37.500 0.00 0.00 0.00 5.10
4250 8061 5.796350 AGATGTATTGTAGTGGTTTTCGC 57.204 39.130 0.00 0.00 0.00 4.70
4290 8101 5.407387 TCTGCAAAAAGATTACCGTAGACAC 59.593 40.000 0.00 0.00 0.00 3.67
4291 8102 5.543714 TCTGCAAAAAGATTACCGTAGACA 58.456 37.500 0.00 0.00 0.00 3.41
4292 8103 6.476243 TTCTGCAAAAAGATTACCGTAGAC 57.524 37.500 0.00 0.00 0.00 2.59
4293 8104 6.348213 GCTTTCTGCAAAAAGATTACCGTAGA 60.348 38.462 16.70 0.00 42.31 2.59
4294 8105 5.795441 GCTTTCTGCAAAAAGATTACCGTAG 59.205 40.000 16.70 0.00 42.31 3.51
4295 8106 5.695818 GCTTTCTGCAAAAAGATTACCGTA 58.304 37.500 16.70 0.00 42.31 4.02
4296 8107 4.546570 GCTTTCTGCAAAAAGATTACCGT 58.453 39.130 16.70 0.00 42.31 4.83
4310 8121 0.368227 CGTCGATCAGTGCTTTCTGC 59.632 55.000 0.00 0.00 43.25 4.26
4311 8122 0.994995 CCGTCGATCAGTGCTTTCTG 59.005 55.000 0.00 0.00 36.85 3.02
4312 8123 0.888619 TCCGTCGATCAGTGCTTTCT 59.111 50.000 0.00 0.00 0.00 2.52
4313 8124 1.855360 GATCCGTCGATCAGTGCTTTC 59.145 52.381 0.00 0.00 43.87 2.62
4314 8125 1.927895 GATCCGTCGATCAGTGCTTT 58.072 50.000 0.00 0.00 43.87 3.51
4315 8126 3.650409 GATCCGTCGATCAGTGCTT 57.350 52.632 0.00 0.00 43.87 3.91
4326 8137 2.795331 GCTTAACTGAGTCCGATCCGTC 60.795 54.545 0.00 0.00 0.00 4.79
4327 8138 1.134560 GCTTAACTGAGTCCGATCCGT 59.865 52.381 0.00 0.00 0.00 4.69
4328 8139 1.405821 AGCTTAACTGAGTCCGATCCG 59.594 52.381 0.00 0.00 0.00 4.18
4329 8140 3.190874 CAAGCTTAACTGAGTCCGATCC 58.809 50.000 0.00 0.00 0.00 3.36
4330 8141 3.851098 ACAAGCTTAACTGAGTCCGATC 58.149 45.455 0.00 0.00 0.00 3.69
4331 8142 3.963428 ACAAGCTTAACTGAGTCCGAT 57.037 42.857 0.00 0.00 0.00 4.18
4332 8143 3.746045 AACAAGCTTAACTGAGTCCGA 57.254 42.857 0.00 0.00 0.00 4.55
4333 8144 5.637810 TCATAAACAAGCTTAACTGAGTCCG 59.362 40.000 0.00 0.00 0.00 4.79
4334 8145 6.426937 TGTCATAAACAAGCTTAACTGAGTCC 59.573 38.462 0.00 0.00 34.03 3.85
4335 8146 7.360438 CCTGTCATAAACAAGCTTAACTGAGTC 60.360 40.741 0.00 0.00 37.45 3.36
4336 8147 6.428159 CCTGTCATAAACAAGCTTAACTGAGT 59.572 38.462 0.00 0.00 37.45 3.41
4337 8148 6.621596 GCCTGTCATAAACAAGCTTAACTGAG 60.622 42.308 0.00 0.00 41.33 3.35
4338 8149 5.181245 GCCTGTCATAAACAAGCTTAACTGA 59.819 40.000 0.00 0.00 41.33 3.41
4339 8150 5.393962 GCCTGTCATAAACAAGCTTAACTG 58.606 41.667 0.00 0.00 41.33 3.16
4340 8151 4.154195 CGCCTGTCATAAACAAGCTTAACT 59.846 41.667 0.00 0.00 42.19 2.24
4341 8152 4.403453 CGCCTGTCATAAACAAGCTTAAC 58.597 43.478 0.00 0.00 42.19 2.01
4342 8153 3.438781 CCGCCTGTCATAAACAAGCTTAA 59.561 43.478 0.00 0.00 42.19 1.85
4343 8154 3.006940 CCGCCTGTCATAAACAAGCTTA 58.993 45.455 0.00 0.00 42.19 3.09
4344 8155 1.812571 CCGCCTGTCATAAACAAGCTT 59.187 47.619 0.00 0.00 42.19 3.74
4345 8156 1.453155 CCGCCTGTCATAAACAAGCT 58.547 50.000 0.00 0.00 42.19 3.74
4346 8157 0.451783 CCCGCCTGTCATAAACAAGC 59.548 55.000 0.00 0.00 41.16 4.01
4347 8158 1.094785 CCCCGCCTGTCATAAACAAG 58.905 55.000 0.00 0.00 37.45 3.16
4348 8159 0.963355 GCCCCGCCTGTCATAAACAA 60.963 55.000 0.00 0.00 37.45 2.83
4349 8160 1.377987 GCCCCGCCTGTCATAAACA 60.378 57.895 0.00 0.00 36.18 2.83
4350 8161 2.119029 GGCCCCGCCTGTCATAAAC 61.119 63.158 0.00 0.00 46.69 2.01
4351 8162 2.274104 GGCCCCGCCTGTCATAAA 59.726 61.111 0.00 0.00 46.69 1.40
4398 8209 1.153881 GTCTAACGGCTGTCGGGAC 60.154 63.158 6.61 7.69 44.45 4.46
4399 8210 2.693762 CGTCTAACGGCTGTCGGGA 61.694 63.158 6.61 0.00 44.45 5.14
4400 8211 2.202570 CGTCTAACGGCTGTCGGG 60.203 66.667 6.61 0.00 44.45 5.14
4409 8220 1.409579 CGTCAAACGCCGTCTAACG 59.590 57.895 0.00 0.00 35.23 3.18
4410 8221 0.940991 ACCGTCAAACGCCGTCTAAC 60.941 55.000 0.00 0.00 40.91 2.34
4411 8222 0.940519 CACCGTCAAACGCCGTCTAA 60.941 55.000 0.00 0.00 40.91 2.10
4412 8223 1.372004 CACCGTCAAACGCCGTCTA 60.372 57.895 0.00 0.00 40.91 2.59
4413 8224 2.660552 CACCGTCAAACGCCGTCT 60.661 61.111 0.00 0.00 40.91 4.18
4414 8225 4.364409 GCACCGTCAAACGCCGTC 62.364 66.667 0.00 0.00 40.91 4.79
4428 8239 4.176752 GATGGAGGGGGACGGCAC 62.177 72.222 0.00 0.00 0.00 5.01
4433 8244 3.757243 ATGGGGGATGGAGGGGGAC 62.757 68.421 0.00 0.00 0.00 4.46
4434 8245 3.394792 ATGGGGGATGGAGGGGGA 61.395 66.667 0.00 0.00 0.00 4.81
4435 8246 2.860971 GATGGGGGATGGAGGGGG 60.861 72.222 0.00 0.00 0.00 5.40
4436 8247 2.158810 CAGATGGGGGATGGAGGGG 61.159 68.421 0.00 0.00 0.00 4.79
4437 8248 0.995675 AACAGATGGGGGATGGAGGG 60.996 60.000 0.00 0.00 0.00 4.30
4438 8249 0.475906 GAACAGATGGGGGATGGAGG 59.524 60.000 0.00 0.00 0.00 4.30
4439 8250 0.107456 CGAACAGATGGGGGATGGAG 59.893 60.000 0.00 0.00 0.00 3.86
4440 8251 0.620410 ACGAACAGATGGGGGATGGA 60.620 55.000 0.00 0.00 0.00 3.41
4441 8252 0.255890 AACGAACAGATGGGGGATGG 59.744 55.000 0.00 0.00 0.00 3.51
4442 8253 2.017049 GAAACGAACAGATGGGGGATG 58.983 52.381 0.00 0.00 0.00 3.51
4443 8254 1.916181 AGAAACGAACAGATGGGGGAT 59.084 47.619 0.00 0.00 0.00 3.85
4444 8255 1.278127 GAGAAACGAACAGATGGGGGA 59.722 52.381 0.00 0.00 0.00 4.81
4445 8256 1.679032 GGAGAAACGAACAGATGGGGG 60.679 57.143 0.00 0.00 0.00 5.40
4446 8257 1.679032 GGGAGAAACGAACAGATGGGG 60.679 57.143 0.00 0.00 0.00 4.96
4447 8258 1.679032 GGGGAGAAACGAACAGATGGG 60.679 57.143 0.00 0.00 0.00 4.00
4448 8259 1.679032 GGGGGAGAAACGAACAGATGG 60.679 57.143 0.00 0.00 0.00 3.51
4449 8260 1.279271 AGGGGGAGAAACGAACAGATG 59.721 52.381 0.00 0.00 0.00 2.90
4450 8261 1.657804 AGGGGGAGAAACGAACAGAT 58.342 50.000 0.00 0.00 0.00 2.90
4451 8262 1.430992 AAGGGGGAGAAACGAACAGA 58.569 50.000 0.00 0.00 0.00 3.41
4452 8263 2.271944 AAAGGGGGAGAAACGAACAG 57.728 50.000 0.00 0.00 0.00 3.16
4453 8264 2.173996 AGAAAAGGGGGAGAAACGAACA 59.826 45.455 0.00 0.00 0.00 3.18
4454 8265 2.812591 GAGAAAAGGGGGAGAAACGAAC 59.187 50.000 0.00 0.00 0.00 3.95
4455 8266 2.224695 GGAGAAAAGGGGGAGAAACGAA 60.225 50.000 0.00 0.00 0.00 3.85
4456 8267 1.350019 GGAGAAAAGGGGGAGAAACGA 59.650 52.381 0.00 0.00 0.00 3.85
4457 8268 1.351350 AGGAGAAAAGGGGGAGAAACG 59.649 52.381 0.00 0.00 0.00 3.60
4458 8269 2.108425 ACAGGAGAAAAGGGGGAGAAAC 59.892 50.000 0.00 0.00 0.00 2.78
4459 8270 2.375509 GACAGGAGAAAAGGGGGAGAAA 59.624 50.000 0.00 0.00 0.00 2.52
4460 8271 1.985895 GACAGGAGAAAAGGGGGAGAA 59.014 52.381 0.00 0.00 0.00 2.87
4461 8272 1.657804 GACAGGAGAAAAGGGGGAGA 58.342 55.000 0.00 0.00 0.00 3.71
4462 8273 0.250513 CGACAGGAGAAAAGGGGGAG 59.749 60.000 0.00 0.00 0.00 4.30
4463 8274 1.838073 GCGACAGGAGAAAAGGGGGA 61.838 60.000 0.00 0.00 0.00 4.81
4464 8275 1.377333 GCGACAGGAGAAAAGGGGG 60.377 63.158 0.00 0.00 0.00 5.40
4465 8276 1.377333 GGCGACAGGAGAAAAGGGG 60.377 63.158 0.00 0.00 0.00 4.79
4466 8277 1.741770 CGGCGACAGGAGAAAAGGG 60.742 63.158 0.00 0.00 0.00 3.95
4467 8278 2.391389 GCGGCGACAGGAGAAAAGG 61.391 63.158 12.98 0.00 0.00 3.11
4468 8279 1.374758 AGCGGCGACAGGAGAAAAG 60.375 57.895 12.98 0.00 0.00 2.27
4469 8280 1.667830 CAGCGGCGACAGGAGAAAA 60.668 57.895 12.98 0.00 0.00 2.29
4470 8281 2.048222 CAGCGGCGACAGGAGAAA 60.048 61.111 12.98 0.00 0.00 2.52
4471 8282 3.282745 GACAGCGGCGACAGGAGAA 62.283 63.158 12.98 0.00 0.00 2.87
4472 8283 3.749064 GACAGCGGCGACAGGAGA 61.749 66.667 12.98 0.00 0.00 3.71
4473 8284 3.691744 GAGACAGCGGCGACAGGAG 62.692 68.421 12.98 0.00 0.00 3.69
4474 8285 3.749064 GAGACAGCGGCGACAGGA 61.749 66.667 12.98 0.00 0.00 3.86
4475 8286 4.803426 GGAGACAGCGGCGACAGG 62.803 72.222 12.98 0.00 0.00 4.00
4476 8287 4.803426 GGGAGACAGCGGCGACAG 62.803 72.222 12.98 0.73 0.00 3.51
4482 8293 3.151022 GAGGAGGGGAGACAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
4483 8294 3.522731 CGAGGAGGGGAGACAGCG 61.523 72.222 0.00 0.00 0.00 5.18
4484 8295 3.844090 GCGAGGAGGGGAGACAGC 61.844 72.222 0.00 0.00 0.00 4.40
4485 8296 3.522731 CGCGAGGAGGGGAGACAG 61.523 72.222 0.00 0.00 0.00 3.51
4486 8297 4.361971 ACGCGAGGAGGGGAGACA 62.362 66.667 15.93 0.00 37.07 3.41
4487 8298 3.519930 GACGCGAGGAGGGGAGAC 61.520 72.222 15.93 0.00 37.07 3.36
4488 8299 3.729489 AGACGCGAGGAGGGGAGA 61.729 66.667 15.93 0.00 37.07 3.71
4489 8300 3.522731 CAGACGCGAGGAGGGGAG 61.523 72.222 15.93 0.00 37.07 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.