Multiple sequence alignment - TraesCS7B01G202800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G202800 chr7B 100.000 3821 0 0 1 3821 372040390 372036570 0.000000e+00 7057.0
1 TraesCS7B01G202800 chr7B 96.804 219 7 0 9 227 51052932 51052714 2.170000e-97 366.0
2 TraesCS7B01G202800 chr7B 95.633 229 8 1 1 227 51059628 51059856 2.170000e-97 366.0
3 TraesCS7B01G202800 chr7B 88.542 96 8 2 3513 3608 474542082 474542174 3.120000e-21 113.0
4 TraesCS7B01G202800 chr7D 94.110 3226 148 10 284 3500 376950096 376946904 0.000000e+00 4867.0
5 TraesCS7B01G202800 chr7D 83.853 545 62 8 995 1538 588750997 588750478 2.650000e-136 496.0
6 TraesCS7B01G202800 chr7D 94.286 105 4 2 3220 3323 588735168 588735065 3.950000e-35 159.0
7 TraesCS7B01G202800 chr7A 94.039 2634 104 12 937 3557 424551302 424548709 0.000000e+00 3945.0
8 TraesCS7B01G202800 chr7A 97.619 84 0 2 3738 3821 424548536 424548455 3.980000e-30 143.0
9 TraesCS7B01G202800 chr3D 83.853 706 82 9 2647 3347 524731969 524732647 0.000000e+00 643.0
10 TraesCS7B01G202800 chr3D 94.805 77 3 1 3665 3740 458620847 458620771 6.710000e-23 119.0
11 TraesCS7B01G202800 chr3B 95.175 228 11 0 1 228 79959069 79958842 1.010000e-95 361.0
12 TraesCS7B01G202800 chr3B 94.737 228 10 2 1 227 79978403 79978629 1.690000e-93 353.0
13 TraesCS7B01G202800 chr3B 93.103 87 5 1 3519 3604 189413907 189413993 4.010000e-25 126.0
14 TraesCS7B01G202800 chr2B 95.175 228 9 2 1 227 717636679 717636905 3.630000e-95 359.0
15 TraesCS7B01G202800 chr2B 94.760 229 10 2 1 228 717632057 717631830 4.690000e-94 355.0
16 TraesCS7B01G202800 chr2B 91.765 85 7 0 3660 3744 514348523 514348607 6.710000e-23 119.0
17 TraesCS7B01G202800 chr1B 95.175 228 9 2 1 227 274853424 274853198 3.630000e-95 359.0
18 TraesCS7B01G202800 chr1B 94.737 228 10 2 1 227 631973725 631973951 1.690000e-93 353.0
19 TraesCS7B01G202800 chr1B 91.797 256 15 6 1 253 274860109 274860361 6.070000e-93 351.0
20 TraesCS7B01G202800 chr1B 92.857 84 6 0 3513 3596 15616822 15616905 5.180000e-24 122.0
21 TraesCS7B01G202800 chr1B 90.698 86 5 3 3662 3746 634499484 634499567 1.120000e-20 111.0
22 TraesCS7B01G202800 chr5A 95.000 80 4 0 3517 3596 385281374 385281295 4.010000e-25 126.0
23 TraesCS7B01G202800 chr5A 93.976 83 3 2 3663 3744 638032982 638032901 1.440000e-24 124.0
24 TraesCS7B01G202800 chr5A 92.941 85 5 1 3664 3747 447370373 447370457 5.180000e-24 122.0
25 TraesCS7B01G202800 chr5A 93.827 81 4 1 3661 3740 638032900 638032980 1.860000e-23 121.0
26 TraesCS7B01G202800 chr5A 93.671 79 5 0 3665 3743 447370449 447370371 6.710000e-23 119.0
27 TraesCS7B01G202800 chr4A 92.135 89 7 0 3516 3604 691397730 691397642 4.010000e-25 126.0
28 TraesCS7B01G202800 chr4A 94.872 39 2 0 2672 2710 435613045 435613007 1.150000e-05 62.1
29 TraesCS7B01G202800 chr6D 94.937 79 4 0 3517 3595 205413578 205413500 1.440000e-24 124.0
30 TraesCS7B01G202800 chr4D 94.937 79 4 0 3517 3595 374220667 374220589 1.440000e-24 124.0
31 TraesCS7B01G202800 chr5B 91.860 86 7 0 3519 3604 562793821 562793736 1.860000e-23 121.0
32 TraesCS7B01G202800 chr2A 87.619 105 6 3 3665 3763 667018451 667018348 8.670000e-22 115.0
33 TraesCS7B01G202800 chr2D 88.000 100 6 4 3659 3753 112870929 112870831 3.120000e-21 113.0
34 TraesCS7B01G202800 chr6B 84.906 106 16 0 3499 3604 470914809 470914914 1.450000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G202800 chr7B 372036570 372040390 3820 True 7057 7057 100.000 1 3821 1 chr7B.!!$R2 3820
1 TraesCS7B01G202800 chr7D 376946904 376950096 3192 True 4867 4867 94.110 284 3500 1 chr7D.!!$R1 3216
2 TraesCS7B01G202800 chr7D 588750478 588750997 519 True 496 496 83.853 995 1538 1 chr7D.!!$R3 543
3 TraesCS7B01G202800 chr7A 424548455 424551302 2847 True 2044 3945 95.829 937 3821 2 chr7A.!!$R1 2884
4 TraesCS7B01G202800 chr3D 524731969 524732647 678 False 643 643 83.853 2647 3347 1 chr3D.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.109723 GGCCCCGCCTGTCATAAATA 59.890 55.0 0.0 0.0 46.69 1.40 F
731 732 0.321298 TGCCCGTTTTCTCTAGCACC 60.321 55.0 0.0 0.0 0.00 5.01 F
2238 2253 0.100146 GCACTCTATTGGCTGCTTGC 59.900 55.0 0.0 0.0 41.94 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1226 0.514255 TGTTGTAGGAGACGACGTCG 59.486 55.0 34.58 34.58 44.54 5.12 R
2254 2269 0.032540 GCAAACTCAGCAAACCCCAG 59.967 55.0 0.00 0.00 0.00 4.45 R
3723 3805 0.409092 TACTACACCCTCCGTCCCAA 59.591 55.0 0.00 0.00 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.364409 GTGCCGTCAAACGCCGTC 62.364 66.667 0.00 0.00 40.91 4.79
23 24 4.595538 TGCCGTCAAACGCCGTCT 62.596 61.111 0.00 0.00 40.91 4.18
24 25 2.431260 GCCGTCAAACGCCGTCTA 60.431 61.111 0.00 0.00 40.91 2.59
25 26 2.023223 GCCGTCAAACGCCGTCTAA 61.023 57.895 0.00 0.00 40.91 2.10
26 27 1.777199 CCGTCAAACGCCGTCTAAC 59.223 57.895 0.00 0.00 40.91 2.34
27 28 1.409579 CGTCAAACGCCGTCTAACG 59.590 57.895 0.00 0.00 35.23 3.18
36 37 2.202570 CGTCTAACGGCTGTCGGG 60.203 66.667 6.61 0.00 44.45 5.14
37 38 2.693762 CGTCTAACGGCTGTCGGGA 61.694 63.158 6.61 0.00 44.45 5.14
38 39 1.153881 GTCTAACGGCTGTCGGGAC 60.154 63.158 6.61 7.69 44.45 4.46
85 86 2.274104 GGCCCCGCCTGTCATAAA 59.726 61.111 0.00 0.00 46.69 1.40
86 87 1.152756 GGCCCCGCCTGTCATAAAT 60.153 57.895 0.00 0.00 46.69 1.40
87 88 0.109723 GGCCCCGCCTGTCATAAATA 59.890 55.000 0.00 0.00 46.69 1.40
88 89 1.477923 GGCCCCGCCTGTCATAAATAA 60.478 52.381 0.00 0.00 46.69 1.40
89 90 1.880027 GCCCCGCCTGTCATAAATAAG 59.120 52.381 0.00 0.00 0.00 1.73
90 91 1.880027 CCCCGCCTGTCATAAATAAGC 59.120 52.381 0.00 0.00 0.00 3.09
91 92 2.487265 CCCCGCCTGTCATAAATAAGCT 60.487 50.000 0.00 0.00 0.00 3.74
92 93 3.214328 CCCGCCTGTCATAAATAAGCTT 58.786 45.455 3.48 3.48 0.00 3.74
93 94 4.385825 CCCGCCTGTCATAAATAAGCTTA 58.614 43.478 8.99 8.99 0.00 3.09
94 95 4.819630 CCCGCCTGTCATAAATAAGCTTAA 59.180 41.667 10.85 0.00 0.00 1.85
95 96 5.277828 CCCGCCTGTCATAAATAAGCTTAAC 60.278 44.000 10.85 3.53 0.00 2.01
96 97 5.527582 CCGCCTGTCATAAATAAGCTTAACT 59.472 40.000 10.85 3.13 0.00 2.24
97 98 6.422223 CGCCTGTCATAAATAAGCTTAACTG 58.578 40.000 10.85 6.91 0.00 3.16
98 99 6.257849 CGCCTGTCATAAATAAGCTTAACTGA 59.742 38.462 10.85 8.17 0.00 3.41
99 100 7.517417 CGCCTGTCATAAATAAGCTTAACTGAG 60.517 40.741 10.85 1.51 0.00 3.35
100 101 7.634522 CCTGTCATAAATAAGCTTAACTGAGC 58.365 38.462 10.85 6.84 43.02 4.26
101 102 7.254932 CCTGTCATAAATAAGCTTAACTGAGCC 60.255 40.741 10.85 0.00 43.74 4.70
102 103 6.542370 TGTCATAAATAAGCTTAACTGAGCCC 59.458 38.462 10.85 1.49 43.74 5.19
103 104 5.758296 TCATAAATAAGCTTAACTGAGCCCG 59.242 40.000 10.85 0.00 43.74 6.13
104 105 3.906720 AATAAGCTTAACTGAGCCCGA 57.093 42.857 10.85 0.00 43.74 5.14
105 106 4.423625 AATAAGCTTAACTGAGCCCGAT 57.576 40.909 10.85 0.00 43.74 4.18
106 107 2.317530 AAGCTTAACTGAGCCCGATC 57.682 50.000 0.00 0.00 43.74 3.69
107 108 0.466124 AGCTTAACTGAGCCCGATCC 59.534 55.000 0.00 0.00 43.74 3.36
108 109 0.876342 GCTTAACTGAGCCCGATCCG 60.876 60.000 0.00 0.00 36.66 4.18
109 110 0.876342 CTTAACTGAGCCCGATCCGC 60.876 60.000 0.00 0.00 0.00 5.54
110 111 2.306255 TTAACTGAGCCCGATCCGCC 62.306 60.000 0.00 0.00 0.00 6.13
114 115 4.726351 GAGCCCGATCCGCCGATC 62.726 72.222 5.09 5.09 41.43 3.69
117 118 3.606662 CCCGATCCGCCGATCAGT 61.607 66.667 14.20 0.00 44.55 3.41
118 119 2.355126 CCGATCCGCCGATCAGTG 60.355 66.667 14.20 0.00 44.55 3.66
119 120 3.032609 CGATCCGCCGATCAGTGC 61.033 66.667 14.20 0.00 44.55 4.40
120 121 2.419198 GATCCGCCGATCAGTGCT 59.581 61.111 9.80 0.00 43.87 4.40
121 122 1.227380 GATCCGCCGATCAGTGCTT 60.227 57.895 9.80 0.00 43.87 3.91
122 123 0.811616 GATCCGCCGATCAGTGCTTT 60.812 55.000 9.80 0.00 43.87 3.51
123 124 0.811616 ATCCGCCGATCAGTGCTTTC 60.812 55.000 0.00 0.00 0.00 2.62
124 125 1.448540 CCGCCGATCAGTGCTTTCT 60.449 57.895 0.00 0.00 0.00 2.52
125 126 1.699656 CCGCCGATCAGTGCTTTCTG 61.700 60.000 0.00 0.00 36.85 3.02
126 127 1.427020 GCCGATCAGTGCTTTCTGC 59.573 57.895 0.00 0.00 43.25 4.26
140 141 4.794169 GCTTTCTGCAAAAAGATTACGGA 58.206 39.130 16.70 0.00 42.31 4.69
141 142 5.219633 GCTTTCTGCAAAAAGATTACGGAA 58.780 37.500 16.70 0.00 42.31 4.30
142 143 5.343325 GCTTTCTGCAAAAAGATTACGGAAG 59.657 40.000 16.70 0.00 42.31 3.46
143 144 6.627395 TTTCTGCAAAAAGATTACGGAAGA 57.373 33.333 0.00 0.00 0.00 2.87
144 145 5.607119 TCTGCAAAAAGATTACGGAAGAC 57.393 39.130 0.00 0.00 0.00 3.01
145 146 5.060506 TCTGCAAAAAGATTACGGAAGACA 58.939 37.500 0.00 0.00 0.00 3.41
146 147 5.049680 TCTGCAAAAAGATTACGGAAGACAC 60.050 40.000 0.00 0.00 0.00 3.67
147 148 4.148891 GCAAAAAGATTACGGAAGACACG 58.851 43.478 0.00 0.00 37.36 4.49
148 149 4.708601 CAAAAAGATTACGGAAGACACGG 58.291 43.478 0.00 0.00 35.23 4.94
149 150 3.672767 AAAGATTACGGAAGACACGGT 57.327 42.857 0.00 0.00 35.23 4.83
150 151 2.649331 AGATTACGGAAGACACGGTG 57.351 50.000 6.58 6.58 35.23 4.94
151 152 1.891150 AGATTACGGAAGACACGGTGT 59.109 47.619 14.66 14.66 35.23 4.16
152 153 2.298163 AGATTACGGAAGACACGGTGTT 59.702 45.455 15.94 0.00 35.23 3.32
153 154 2.600470 TTACGGAAGACACGGTGTTT 57.400 45.000 15.94 6.89 35.23 2.83
154 155 2.600470 TACGGAAGACACGGTGTTTT 57.400 45.000 15.94 15.93 35.23 2.43
155 156 1.741528 ACGGAAGACACGGTGTTTTT 58.258 45.000 15.94 12.75 35.23 1.94
179 180 8.586570 TTTGCAAAAGAAATGTATTGTAGTGG 57.413 30.769 10.02 0.00 0.00 4.00
180 181 7.283625 TGCAAAAGAAATGTATTGTAGTGGT 57.716 32.000 0.00 0.00 0.00 4.16
181 182 7.721402 TGCAAAAGAAATGTATTGTAGTGGTT 58.279 30.769 0.00 0.00 0.00 3.67
182 183 8.200792 TGCAAAAGAAATGTATTGTAGTGGTTT 58.799 29.630 0.00 0.00 0.00 3.27
183 184 9.040939 GCAAAAGAAATGTATTGTAGTGGTTTT 57.959 29.630 0.00 0.00 0.00 2.43
185 186 9.458374 AAAAGAAATGTATTGTAGTGGTTTTCG 57.542 29.630 0.00 0.00 0.00 3.46
186 187 6.608610 AGAAATGTATTGTAGTGGTTTTCGC 58.391 36.000 0.00 0.00 0.00 4.70
187 188 5.950758 AATGTATTGTAGTGGTTTTCGCA 57.049 34.783 0.00 0.00 0.00 5.10
188 189 5.950758 ATGTATTGTAGTGGTTTTCGCAA 57.049 34.783 0.00 0.00 0.00 4.85
189 190 5.098218 TGTATTGTAGTGGTTTTCGCAAC 57.902 39.130 0.00 0.00 0.00 4.17
190 191 4.575236 TGTATTGTAGTGGTTTTCGCAACA 59.425 37.500 0.51 0.00 0.00 3.33
191 192 3.408288 TTGTAGTGGTTTTCGCAACAC 57.592 42.857 0.00 0.00 0.00 3.32
192 193 2.634600 TGTAGTGGTTTTCGCAACACT 58.365 42.857 5.31 5.31 45.32 3.55
193 194 3.011119 TGTAGTGGTTTTCGCAACACTT 58.989 40.909 5.28 0.00 41.03 3.16
194 195 2.559998 AGTGGTTTTCGCAACACTTG 57.440 45.000 0.00 0.00 41.03 3.16
195 196 1.816224 AGTGGTTTTCGCAACACTTGT 59.184 42.857 0.00 0.00 41.03 3.16
196 197 2.159435 AGTGGTTTTCGCAACACTTGTC 60.159 45.455 0.00 0.00 41.03 3.18
197 198 2.088423 TGGTTTTCGCAACACTTGTCT 58.912 42.857 0.51 0.00 0.00 3.41
198 199 2.490115 TGGTTTTCGCAACACTTGTCTT 59.510 40.909 0.51 0.00 0.00 3.01
199 200 3.105937 GGTTTTCGCAACACTTGTCTTC 58.894 45.455 0.51 0.00 0.00 2.87
200 201 3.426963 GGTTTTCGCAACACTTGTCTTCA 60.427 43.478 0.51 0.00 0.00 3.02
201 202 4.162812 GTTTTCGCAACACTTGTCTTCAA 58.837 39.130 0.00 0.00 0.00 2.69
202 203 4.427096 TTTCGCAACACTTGTCTTCAAA 57.573 36.364 0.00 0.00 32.87 2.69
203 204 3.673746 TCGCAACACTTGTCTTCAAAG 57.326 42.857 0.00 0.00 32.87 2.77
204 205 3.006940 TCGCAACACTTGTCTTCAAAGT 58.993 40.909 0.00 0.00 32.87 2.66
205 206 3.100817 CGCAACACTTGTCTTCAAAGTG 58.899 45.455 13.30 13.30 37.98 3.16
206 207 3.438360 GCAACACTTGTCTTCAAAGTGG 58.562 45.455 17.76 5.16 37.20 4.00
207 208 3.119495 GCAACACTTGTCTTCAAAGTGGT 60.119 43.478 17.76 10.51 37.20 4.16
208 209 4.414852 CAACACTTGTCTTCAAAGTGGTG 58.585 43.478 17.12 17.12 40.30 4.17
209 210 3.016736 ACACTTGTCTTCAAAGTGGTGG 58.983 45.455 17.76 0.00 37.20 4.61
210 211 3.016736 CACTTGTCTTCAAAGTGGTGGT 58.983 45.455 8.15 0.00 33.47 4.16
211 212 3.443681 CACTTGTCTTCAAAGTGGTGGTT 59.556 43.478 8.15 0.00 33.47 3.67
212 213 4.082245 CACTTGTCTTCAAAGTGGTGGTTT 60.082 41.667 8.15 0.00 33.47 3.27
213 214 4.526650 ACTTGTCTTCAAAGTGGTGGTTTT 59.473 37.500 0.00 0.00 32.87 2.43
214 215 4.712122 TGTCTTCAAAGTGGTGGTTTTC 57.288 40.909 0.00 0.00 0.00 2.29
215 216 4.340617 TGTCTTCAAAGTGGTGGTTTTCT 58.659 39.130 0.00 0.00 0.00 2.52
216 217 4.157656 TGTCTTCAAAGTGGTGGTTTTCTG 59.842 41.667 0.00 0.00 0.00 3.02
217 218 3.130340 TCTTCAAAGTGGTGGTTTTCTGC 59.870 43.478 0.00 0.00 0.00 4.26
218 219 2.451490 TCAAAGTGGTGGTTTTCTGCA 58.549 42.857 0.00 0.00 0.00 4.41
219 220 2.828520 TCAAAGTGGTGGTTTTCTGCAA 59.171 40.909 0.00 0.00 0.00 4.08
220 221 3.450457 TCAAAGTGGTGGTTTTCTGCAAT 59.550 39.130 0.00 0.00 0.00 3.56
221 222 4.081198 TCAAAGTGGTGGTTTTCTGCAATT 60.081 37.500 0.00 0.00 0.00 2.32
222 223 4.486125 AAGTGGTGGTTTTCTGCAATTT 57.514 36.364 0.00 0.00 0.00 1.82
223 224 5.606348 AAGTGGTGGTTTTCTGCAATTTA 57.394 34.783 0.00 0.00 0.00 1.40
224 225 4.944048 AGTGGTGGTTTTCTGCAATTTAC 58.056 39.130 0.00 0.00 0.00 2.01
225 226 4.649218 AGTGGTGGTTTTCTGCAATTTACT 59.351 37.500 0.00 0.00 0.00 2.24
226 227 4.982295 GTGGTGGTTTTCTGCAATTTACTC 59.018 41.667 0.00 0.00 0.00 2.59
227 228 4.892934 TGGTGGTTTTCTGCAATTTACTCT 59.107 37.500 0.00 0.00 0.00 3.24
228 229 5.362430 TGGTGGTTTTCTGCAATTTACTCTT 59.638 36.000 0.00 0.00 0.00 2.85
229 230 5.691754 GGTGGTTTTCTGCAATTTACTCTTG 59.308 40.000 0.00 0.00 0.00 3.02
237 238 4.147219 GCAATTTACTCTTGCAGAACGT 57.853 40.909 3.32 0.00 46.44 3.99
238 239 5.277601 GCAATTTACTCTTGCAGAACGTA 57.722 39.130 3.32 0.00 46.44 3.57
239 240 5.869350 GCAATTTACTCTTGCAGAACGTAT 58.131 37.500 3.32 0.00 46.44 3.06
240 241 5.960105 GCAATTTACTCTTGCAGAACGTATC 59.040 40.000 3.32 0.00 46.44 2.24
241 242 6.402118 GCAATTTACTCTTGCAGAACGTATCA 60.402 38.462 3.32 0.00 46.44 2.15
242 243 7.677276 GCAATTTACTCTTGCAGAACGTATCAT 60.677 37.037 3.32 0.00 46.44 2.45
243 244 6.887376 TTTACTCTTGCAGAACGTATCATC 57.113 37.500 0.00 0.00 0.00 2.92
244 245 3.439293 ACTCTTGCAGAACGTATCATCG 58.561 45.455 0.00 0.00 0.00 3.84
245 246 2.791560 CTCTTGCAGAACGTATCATCGG 59.208 50.000 0.00 0.00 34.94 4.18
246 247 1.258982 CTTGCAGAACGTATCATCGGC 59.741 52.381 3.54 3.54 37.29 5.54
247 248 0.529773 TGCAGAACGTATCATCGGCC 60.530 55.000 7.47 0.00 36.16 6.13
248 249 1.548973 GCAGAACGTATCATCGGCCG 61.549 60.000 22.12 22.12 31.71 6.13
249 250 0.939577 CAGAACGTATCATCGGCCGG 60.940 60.000 27.83 10.69 34.94 6.13
250 251 1.066918 GAACGTATCATCGGCCGGT 59.933 57.895 27.83 18.03 34.94 5.28
251 252 1.213094 GAACGTATCATCGGCCGGTG 61.213 60.000 32.79 32.79 34.94 4.94
252 253 2.355837 CGTATCATCGGCCGGTGG 60.356 66.667 36.55 18.05 0.00 4.61
253 254 2.819550 GTATCATCGGCCGGTGGT 59.180 61.111 36.55 33.37 0.00 4.16
254 255 1.594293 GTATCATCGGCCGGTGGTG 60.594 63.158 36.55 23.14 0.00 4.17
255 256 2.802724 TATCATCGGCCGGTGGTGG 61.803 63.158 36.55 13.26 0.00 4.61
257 258 4.715523 CATCGGCCGGTGGTGGTT 62.716 66.667 31.13 0.00 0.00 3.67
258 259 4.715523 ATCGGCCGGTGGTGGTTG 62.716 66.667 27.83 0.00 0.00 3.77
263 264 4.954970 CCGGTGGTGGTTGCAGCT 62.955 66.667 0.00 0.00 0.00 4.24
264 265 2.906897 CGGTGGTGGTTGCAGCTT 60.907 61.111 0.00 0.00 0.00 3.74
265 266 2.730094 GGTGGTGGTTGCAGCTTG 59.270 61.111 0.00 0.00 0.00 4.01
266 267 2.028043 GTGGTGGTTGCAGCTTGC 59.972 61.111 0.00 1.70 45.29 4.01
267 268 2.123769 TGGTGGTTGCAGCTTGCT 60.124 55.556 0.00 0.00 45.31 3.91
268 269 2.337532 GGTGGTTGCAGCTTGCTG 59.662 61.111 17.34 17.34 45.31 4.41
275 276 4.143333 GCAGCTTGCTGCCCCATG 62.143 66.667 30.55 4.10 43.99 3.66
276 277 3.458163 CAGCTTGCTGCCCCATGG 61.458 66.667 4.14 4.14 44.23 3.66
277 278 3.988678 AGCTTGCTGCCCCATGGT 61.989 61.111 11.73 0.00 44.23 3.55
278 279 2.999063 GCTTGCTGCCCCATGGTT 60.999 61.111 11.73 0.00 35.15 3.67
279 280 2.975536 CTTGCTGCCCCATGGTTG 59.024 61.111 11.73 2.24 0.00 3.77
280 281 3.305177 CTTGCTGCCCCATGGTTGC 62.305 63.158 11.73 13.56 34.20 4.17
281 282 4.617556 TGCTGCCCCATGGTTGCA 62.618 61.111 21.14 21.14 38.81 4.08
282 283 3.312718 GCTGCCCCATGGTTGCAA 61.313 61.111 22.25 0.00 34.06 4.08
286 287 1.218854 GCCCCATGGTTGCAACATC 59.781 57.895 29.55 14.69 0.00 3.06
294 295 1.793613 GTTGCAACATCGTGAGCGC 60.794 57.895 24.52 0.00 38.14 5.92
343 344 4.007644 CACCGTCTGCTGCCCTCA 62.008 66.667 0.00 0.00 0.00 3.86
345 346 4.767255 CCGTCTGCTGCCCTCACC 62.767 72.222 0.00 0.00 0.00 4.02
353 354 2.121963 TGCCCTCACCCTGGTCTT 60.122 61.111 0.00 0.00 0.00 3.01
395 396 3.797451 TGAGCATCACAGCAAAACAAA 57.203 38.095 0.00 0.00 42.56 2.83
396 397 4.120792 TGAGCATCACAGCAAAACAAAA 57.879 36.364 0.00 0.00 42.56 2.44
401 402 2.869897 TCACAGCAAAACAAAACGTCC 58.130 42.857 0.00 0.00 0.00 4.79
402 403 2.229062 TCACAGCAAAACAAAACGTCCA 59.771 40.909 0.00 0.00 0.00 4.02
461 462 4.039357 ACCCTGTCGTCGTCGCAG 62.039 66.667 15.28 15.28 39.22 5.18
466 467 3.598562 GTCGTCGTCGCAGCATCG 61.599 66.667 0.00 0.00 36.96 3.84
472 473 3.918220 GTCGCAGCATCGCTTCCG 61.918 66.667 0.00 0.00 36.40 4.30
482 483 1.466950 CATCGCTTCCGTTGGCTAAAA 59.533 47.619 0.00 0.00 35.54 1.52
544 545 0.466007 CATCCCCATCACCGATTGCA 60.466 55.000 0.00 0.00 0.00 4.08
559 560 1.719063 TTGCAGCTCCTTTCACCCCT 61.719 55.000 0.00 0.00 0.00 4.79
591 592 1.302383 AATCGCATCGCCGGTTGAAA 61.302 50.000 1.90 0.00 29.06 2.69
592 593 1.977594 ATCGCATCGCCGGTTGAAAC 61.978 55.000 1.90 0.00 0.00 2.78
600 601 1.332375 CGCCGGTTGAAACTTTTCTGA 59.668 47.619 1.90 0.00 38.02 3.27
602 603 2.853281 GCCGGTTGAAACTTTTCTGACG 60.853 50.000 1.90 4.91 38.02 4.35
613 614 0.960364 TTTCTGACGCATCTTGCCCC 60.960 55.000 0.00 0.00 41.12 5.80
632 633 4.326766 GCAAGCCGCTTGTCGCAA 62.327 61.111 29.15 0.00 42.77 4.85
645 646 4.974468 CGCAACAAATCGCGCTAT 57.026 50.000 5.56 0.00 45.57 2.97
663 664 4.498323 CGCTATCATTTGAAGCTTTTCTGC 59.502 41.667 0.00 0.00 34.03 4.26
665 666 4.877378 ATCATTTGAAGCTTTTCTGCCA 57.123 36.364 0.00 0.00 0.00 4.92
668 669 1.774110 TTGAAGCTTTTCTGCCACCA 58.226 45.000 0.00 0.00 0.00 4.17
669 670 1.321474 TGAAGCTTTTCTGCCACCAG 58.679 50.000 0.00 0.00 40.54 4.00
674 675 1.069227 GCTTTTCTGCCACCAGTTACG 60.069 52.381 0.00 0.00 40.09 3.18
680 681 0.616371 TGCCACCAGTTACGGCTATT 59.384 50.000 0.00 0.00 46.39 1.73
683 684 2.277084 CCACCAGTTACGGCTATTGAC 58.723 52.381 0.00 0.00 0.00 3.18
705 706 3.357079 CCAGTGGCGTGTTCCAGC 61.357 66.667 0.00 0.00 36.67 4.85
730 731 1.398390 CATGCCCGTTTTCTCTAGCAC 59.602 52.381 0.00 0.00 32.26 4.40
731 732 0.321298 TGCCCGTTTTCTCTAGCACC 60.321 55.000 0.00 0.00 0.00 5.01
746 747 0.512952 GCACCGTGAGCTGTGTAAAG 59.487 55.000 1.65 0.00 33.24 1.85
753 754 1.970640 TGAGCTGTGTAAAGGAGAGCA 59.029 47.619 0.00 0.00 31.80 4.26
754 755 2.028658 TGAGCTGTGTAAAGGAGAGCAG 60.029 50.000 0.00 0.00 31.80 4.24
756 757 1.731720 CTGTGTAAAGGAGAGCAGCC 58.268 55.000 0.00 0.00 0.00 4.85
790 791 4.370049 TCGACGCCCGATTAAAATCATTA 58.630 39.130 3.76 0.00 43.23 1.90
791 792 4.992319 TCGACGCCCGATTAAAATCATTAT 59.008 37.500 3.76 0.00 43.23 1.28
833 834 3.999001 CACCAACCATATCATCATCCTCG 59.001 47.826 0.00 0.00 0.00 4.63
855 856 4.491676 GCATGTGAGAACATTTGCTTGAT 58.508 39.130 0.00 0.00 35.44 2.57
890 891 2.159310 TCACCAAAAGCAAAGAACACCG 60.159 45.455 0.00 0.00 0.00 4.94
931 932 0.538287 GGCAAGACAGCAAAGAGGGT 60.538 55.000 0.00 0.00 35.83 4.34
932 933 0.595095 GCAAGACAGCAAAGAGGGTG 59.405 55.000 0.00 0.00 41.84 4.61
935 936 4.164258 ACAGCAAAGAGGGTGTGC 57.836 55.556 0.00 0.00 46.76 4.57
940 941 1.737355 GCAAAGAGGGTGTGCAGCAA 61.737 55.000 0.00 0.00 38.19 3.91
953 954 0.823356 GCAGCAAAGAGGGTGTGGAA 60.823 55.000 0.00 0.00 38.49 3.53
973 975 2.363795 CGCCCACCTCCCACTCTA 60.364 66.667 0.00 0.00 0.00 2.43
1212 1226 4.851179 GACCGAATCCCGCACCCC 62.851 72.222 0.00 0.00 36.84 4.95
1297 1311 1.730487 GAGCTCTTCTCCGCGATGA 59.270 57.895 8.23 1.47 35.77 2.92
1332 1346 0.611200 CGTCCTGGAACACCATGGTA 59.389 55.000 19.28 0.00 32.90 3.25
1539 1554 0.546122 TGTCAGGGTACATGGATGCC 59.454 55.000 0.00 0.00 0.00 4.40
1542 1557 2.113139 GGGTACATGGATGCCGGG 59.887 66.667 2.18 0.00 0.00 5.73
1545 1560 1.227853 GTACATGGATGCCGGGGAC 60.228 63.158 2.18 0.00 0.00 4.46
1626 1641 2.346766 CCATGGTTGCTGGCTATGTA 57.653 50.000 2.57 0.00 0.00 2.29
1716 1731 5.159209 CCAAACGAGTCGACATTAAGTAGT 58.841 41.667 21.50 0.00 0.00 2.73
1765 1780 1.574526 CCTGGGATTTGGGAGGCAGA 61.575 60.000 0.00 0.00 0.00 4.26
1779 1794 2.169352 GAGGCAGATACATCAGTGGTGT 59.831 50.000 14.66 14.66 0.00 4.16
1857 1872 2.665185 AAGTGCGGCGACTTGGAC 60.665 61.111 12.98 0.00 34.79 4.02
1898 1913 1.221414 GAGATGCGTACAAGGGATGC 58.779 55.000 0.00 0.00 0.00 3.91
1987 2002 5.591099 TGTTTGAAAAGATGAAGGCTCAAC 58.409 37.500 0.00 0.00 34.49 3.18
2028 2043 6.072175 GGATTACTTTTGTGGCAGTATTGACA 60.072 38.462 0.00 0.00 41.02 3.58
2091 2106 5.176223 GTGTTTTGAGACAATGCAGGAAATG 59.824 40.000 0.00 0.00 0.00 2.32
2238 2253 0.100146 GCACTCTATTGGCTGCTTGC 59.900 55.000 0.00 0.00 41.94 4.01
2254 2269 5.674820 GCTGCTTGCAGAGTTTATAAGAACC 60.675 44.000 24.67 0.00 42.31 3.62
2258 2273 4.843728 TGCAGAGTTTATAAGAACCTGGG 58.156 43.478 0.00 0.00 32.86 4.45
2345 2360 6.284891 ACAGTTGGCAAATATTTATGCTGT 57.715 33.333 0.00 4.98 42.20 4.40
2442 2457 1.064389 AGCTGGGTTGAGATAAAGGGC 60.064 52.381 0.00 0.00 0.00 5.19
2841 2871 5.705905 GTGAAGAAAGCCAGTAACAAGGTAT 59.294 40.000 0.00 0.00 0.00 2.73
2842 2872 5.705441 TGAAGAAAGCCAGTAACAAGGTATG 59.295 40.000 0.00 0.00 0.00 2.39
2844 2874 6.067217 AGAAAGCCAGTAACAAGGTATGAT 57.933 37.500 0.00 0.00 0.00 2.45
2845 2875 5.882557 AGAAAGCCAGTAACAAGGTATGATG 59.117 40.000 0.00 0.00 0.00 3.07
2846 2876 4.844349 AGCCAGTAACAAGGTATGATGT 57.156 40.909 0.00 0.00 0.00 3.06
2847 2877 5.950544 AGCCAGTAACAAGGTATGATGTA 57.049 39.130 0.00 0.00 0.00 2.29
2848 2878 6.500589 AGCCAGTAACAAGGTATGATGTAT 57.499 37.500 0.00 0.00 0.00 2.29
2849 2879 7.612065 AGCCAGTAACAAGGTATGATGTATA 57.388 36.000 0.00 0.00 0.00 1.47
2850 2880 7.442656 AGCCAGTAACAAGGTATGATGTATAC 58.557 38.462 0.00 0.00 40.79 1.47
2851 2881 7.070696 AGCCAGTAACAAGGTATGATGTATACA 59.929 37.037 8.27 8.27 42.85 2.29
2852 2882 7.385205 GCCAGTAACAAGGTATGATGTATACAG 59.615 40.741 11.91 0.00 42.85 2.74
2853 2883 7.872993 CCAGTAACAAGGTATGATGTATACAGG 59.127 40.741 11.91 0.00 42.85 4.00
2854 2884 7.385205 CAGTAACAAGGTATGATGTATACAGGC 59.615 40.741 11.91 6.64 42.85 4.85
2855 2885 5.887214 ACAAGGTATGATGTATACAGGCA 57.113 39.130 11.91 12.00 42.85 4.75
2856 2886 6.247229 ACAAGGTATGATGTATACAGGCAA 57.753 37.500 11.91 0.00 42.85 4.52
2857 2887 6.291377 ACAAGGTATGATGTATACAGGCAAG 58.709 40.000 11.91 3.45 42.85 4.01
2898 2942 6.166279 CAGTAGTTGATCCTTAACAAGAGCA 58.834 40.000 0.00 0.00 0.00 4.26
2899 2943 6.650807 CAGTAGTTGATCCTTAACAAGAGCAA 59.349 38.462 0.00 0.00 0.00 3.91
2900 2944 6.876257 AGTAGTTGATCCTTAACAAGAGCAAG 59.124 38.462 0.00 0.00 0.00 4.01
2901 2945 5.869579 AGTTGATCCTTAACAAGAGCAAGA 58.130 37.500 0.00 0.00 0.00 3.02
2902 2946 5.703130 AGTTGATCCTTAACAAGAGCAAGAC 59.297 40.000 0.00 0.00 0.00 3.01
2903 2947 5.227569 TGATCCTTAACAAGAGCAAGACA 57.772 39.130 0.00 0.00 0.00 3.41
2904 2948 5.809001 TGATCCTTAACAAGAGCAAGACAT 58.191 37.500 0.00 0.00 0.00 3.06
2905 2949 5.645067 TGATCCTTAACAAGAGCAAGACATG 59.355 40.000 0.00 0.00 0.00 3.21
2906 2950 4.973168 TCCTTAACAAGAGCAAGACATGT 58.027 39.130 0.00 0.00 0.00 3.21
2907 2951 4.756642 TCCTTAACAAGAGCAAGACATGTG 59.243 41.667 1.15 0.00 0.00 3.21
2908 2952 4.756642 CCTTAACAAGAGCAAGACATGTGA 59.243 41.667 1.15 0.00 0.00 3.58
2909 2953 5.413833 CCTTAACAAGAGCAAGACATGTGAT 59.586 40.000 1.15 0.00 0.00 3.06
2910 2954 4.761235 AACAAGAGCAAGACATGTGATG 57.239 40.909 1.15 2.73 0.00 3.07
2937 2981 4.184629 GGATCTGCGAAGTAGTCAACATT 58.815 43.478 0.00 0.00 42.21 2.71
2952 2996 8.988934 GTAGTCAACATTCTAACATGTGAGAAA 58.011 33.333 26.15 9.56 37.46 2.52
2964 3008 9.599866 CTAACATGTGAGAAATTACCATAGTGA 57.400 33.333 3.86 0.00 0.00 3.41
3018 3062 1.826385 CCCTGTGAGGTTAGGCAAAG 58.174 55.000 0.00 0.00 31.93 2.77
3177 3221 4.712476 GGAGATGTGTATGCTCCAATTCT 58.288 43.478 0.00 0.00 45.89 2.40
3347 3391 3.188667 GCACTGCATGATGTAGATGGATG 59.811 47.826 17.41 5.71 34.09 3.51
3348 3392 4.638304 CACTGCATGATGTAGATGGATGA 58.362 43.478 17.41 0.00 34.09 2.92
3362 3406 8.470805 TGTAGATGGATGAGAGAGTCTTAAAAC 58.529 37.037 0.00 0.00 0.00 2.43
3441 3485 4.336153 ACACCGGGTAAACTTAACACTTTG 59.664 41.667 6.32 0.00 0.00 2.77
3461 3505 9.474920 CACTTTGTTGAAGAAAAATAGCCATTA 57.525 29.630 0.00 0.00 38.77 1.90
3524 3568 8.752766 ATATTATTACCGGAAACATGTACTCG 57.247 34.615 9.46 3.17 0.00 4.18
3549 3593 2.004583 TCCGGAATTACTTGTCGCAG 57.995 50.000 0.00 0.00 0.00 5.18
3557 3601 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
3558 3602 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3559 3603 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3560 3604 2.485426 ACTTGTCGCAGAAATGGATGTG 59.515 45.455 0.00 0.00 39.69 3.21
3562 3606 2.076100 TGTCGCAGAAATGGATGTGTC 58.924 47.619 0.00 0.00 39.69 3.67
3563 3607 2.289631 TGTCGCAGAAATGGATGTGTCT 60.290 45.455 0.00 0.00 39.69 3.41
3566 3610 3.447229 TCGCAGAAATGGATGTGTCTAGA 59.553 43.478 0.00 0.00 0.00 2.43
3567 3611 4.100035 TCGCAGAAATGGATGTGTCTAGAT 59.900 41.667 0.00 0.00 0.00 1.98
3568 3612 4.210746 CGCAGAAATGGATGTGTCTAGATG 59.789 45.833 0.00 0.00 0.00 2.90
3569 3613 5.121811 GCAGAAATGGATGTGTCTAGATGT 58.878 41.667 0.00 0.00 0.00 3.06
3570 3614 6.283694 GCAGAAATGGATGTGTCTAGATGTA 58.716 40.000 0.00 0.00 0.00 2.29
3571 3615 6.933521 GCAGAAATGGATGTGTCTAGATGTAT 59.066 38.462 0.00 0.00 0.00 2.29
3572 3616 7.443575 GCAGAAATGGATGTGTCTAGATGTATT 59.556 37.037 0.00 0.00 0.00 1.89
3574 3618 9.911788 AGAAATGGATGTGTCTAGATGTATTTT 57.088 29.630 0.00 0.00 0.00 1.82
3579 3623 9.599866 TGGATGTGTCTAGATGTATTTTAGTTG 57.400 33.333 0.00 0.00 0.00 3.16
3637 3719 5.765182 TCCTACTTTCCAAAGAAGCTCAAAG 59.235 40.000 6.05 0.00 39.31 2.77
3641 3723 6.333416 ACTTTCCAAAGAAGCTCAAAGTTTC 58.667 36.000 6.05 0.00 39.31 2.78
3643 3725 4.536765 TCCAAAGAAGCTCAAAGTTTCCT 58.463 39.130 0.00 0.00 36.28 3.36
3652 3734 9.036980 AGAAGCTCAAAGTTTCCTAGATTAGTA 57.963 33.333 0.00 0.00 36.28 1.82
3653 3735 9.089601 GAAGCTCAAAGTTTCCTAGATTAGTAC 57.910 37.037 0.00 0.00 30.44 2.73
3654 3736 8.368962 AGCTCAAAGTTTCCTAGATTAGTACT 57.631 34.615 0.00 0.00 0.00 2.73
3656 3738 7.492994 GCTCAAAGTTTCCTAGATTAGTACTGG 59.507 40.741 5.39 0.00 0.00 4.00
3657 3739 8.431910 TCAAAGTTTCCTAGATTAGTACTGGT 57.568 34.615 5.39 0.00 0.00 4.00
3658 3740 8.529476 TCAAAGTTTCCTAGATTAGTACTGGTC 58.471 37.037 5.39 3.42 0.00 4.02
3659 3741 8.311836 CAAAGTTTCCTAGATTAGTACTGGTCA 58.688 37.037 5.39 0.00 0.00 4.02
3661 3743 6.952358 AGTTTCCTAGATTAGTACTGGTCACA 59.048 38.462 5.39 0.00 0.00 3.58
3662 3744 7.620094 AGTTTCCTAGATTAGTACTGGTCACAT 59.380 37.037 5.39 0.00 0.00 3.21
3663 3745 6.961360 TCCTAGATTAGTACTGGTCACATG 57.039 41.667 5.39 0.00 0.00 3.21
3664 3746 6.432581 TCCTAGATTAGTACTGGTCACATGT 58.567 40.000 5.39 0.00 0.00 3.21
3665 3747 7.580007 TCCTAGATTAGTACTGGTCACATGTA 58.420 38.462 5.39 0.00 0.00 2.29
3666 3748 7.501559 TCCTAGATTAGTACTGGTCACATGTAC 59.498 40.741 5.39 0.00 37.42 2.90
3667 3749 7.502895 CCTAGATTAGTACTGGTCACATGTACT 59.497 40.741 5.39 14.07 45.72 2.73
3668 3750 7.336161 AGATTAGTACTGGTCACATGTACTC 57.664 40.000 13.29 3.48 43.70 2.59
3670 3752 3.097614 AGTACTGGTCACATGTACTCCC 58.902 50.000 0.00 0.00 41.86 4.30
3672 3754 2.180276 ACTGGTCACATGTACTCCCTC 58.820 52.381 0.00 0.00 0.00 4.30
3673 3755 1.482593 CTGGTCACATGTACTCCCTCC 59.517 57.143 0.00 0.00 0.00 4.30
3676 3758 2.103263 GGTCACATGTACTCCCTCCATC 59.897 54.545 0.00 0.00 0.00 3.51
3677 3759 2.103263 GTCACATGTACTCCCTCCATCC 59.897 54.545 0.00 0.00 0.00 3.51
3679 3761 1.009552 ACATGTACTCCCTCCATCCCA 59.990 52.381 0.00 0.00 0.00 4.37
3680 3762 2.126882 CATGTACTCCCTCCATCCCAA 58.873 52.381 0.00 0.00 0.00 4.12
3681 3763 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
3683 3765 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
3685 3767 4.791334 TGTACTCCCTCCATCCCAAAATAA 59.209 41.667 0.00 0.00 0.00 1.40
3686 3768 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
3687 3769 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
3690 3772 4.482025 TCCCTCCATCCCAAAATAAGTGAT 59.518 41.667 0.00 0.00 0.00 3.06
3691 3773 5.043432 TCCCTCCATCCCAAAATAAGTGATT 60.043 40.000 0.00 0.00 0.00 2.57
3692 3774 5.302823 CCCTCCATCCCAAAATAAGTGATTC 59.697 44.000 0.00 0.00 0.00 2.52
3693 3775 5.893255 CCTCCATCCCAAAATAAGTGATTCA 59.107 40.000 0.00 0.00 0.00 2.57
3694 3776 6.380846 CCTCCATCCCAAAATAAGTGATTCAA 59.619 38.462 0.00 0.00 0.00 2.69
3695 3777 7.169158 TCCATCCCAAAATAAGTGATTCAAC 57.831 36.000 0.00 0.00 0.00 3.18
3696 3778 6.953520 TCCATCCCAAAATAAGTGATTCAACT 59.046 34.615 0.00 0.00 0.00 3.16
3697 3779 7.454380 TCCATCCCAAAATAAGTGATTCAACTT 59.546 33.333 0.00 0.00 42.89 2.66
3698 3780 8.096414 CCATCCCAAAATAAGTGATTCAACTTT 58.904 33.333 6.76 0.00 40.77 2.66
3699 3781 8.928733 CATCCCAAAATAAGTGATTCAACTTTG 58.071 33.333 6.76 4.51 40.77 2.77
3700 3782 8.017418 TCCCAAAATAAGTGATTCAACTTTGT 57.983 30.769 6.76 0.00 40.77 2.83
3701 3783 9.137459 TCCCAAAATAAGTGATTCAACTTTGTA 57.863 29.630 6.76 0.00 40.77 2.41
3702 3784 9.927668 CCCAAAATAAGTGATTCAACTTTGTAT 57.072 29.630 6.76 0.00 40.77 2.29
3727 3809 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3728 3810 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
3729 3811 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3730 3812 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3731 3813 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3732 3814 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3733 3815 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3734 3816 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3735 3817 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3736 3818 1.990327 ACTTATTTTGGGACGGAGGGT 59.010 47.619 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.202570 CCCGACAGCCGTTAGACG 60.203 66.667 0.00 0.00 42.11 4.18
20 21 1.153881 GTCCCGACAGCCGTTAGAC 60.154 63.158 0.00 0.00 36.31 2.59
21 22 2.693762 CGTCCCGACAGCCGTTAGA 61.694 63.158 0.00 0.00 36.31 2.10
22 23 2.202570 CGTCCCGACAGCCGTTAG 60.203 66.667 0.00 0.00 36.31 2.34
23 24 3.751246 CCGTCCCGACAGCCGTTA 61.751 66.667 0.00 0.00 36.31 3.18
46 47 4.560856 TTTTGCGCACGTGGCACC 62.561 61.111 24.98 6.08 45.17 5.01
47 48 2.580867 TTTTTGCGCACGTGGCAC 60.581 55.556 24.98 7.79 45.17 5.01
69 70 1.880027 CTTATTTATGACAGGCGGGGC 59.120 52.381 0.00 0.00 0.00 5.80
70 71 1.880027 GCTTATTTATGACAGGCGGGG 59.120 52.381 0.00 0.00 0.00 5.73
71 72 2.851195 AGCTTATTTATGACAGGCGGG 58.149 47.619 0.00 0.00 0.00 6.13
72 73 5.527582 AGTTAAGCTTATTTATGACAGGCGG 59.472 40.000 7.08 0.00 0.00 6.13
73 74 6.257849 TCAGTTAAGCTTATTTATGACAGGCG 59.742 38.462 7.08 0.00 0.00 5.52
74 75 7.553881 TCAGTTAAGCTTATTTATGACAGGC 57.446 36.000 7.08 0.00 0.00 4.85
75 76 7.254932 GGCTCAGTTAAGCTTATTTATGACAGG 60.255 40.741 7.08 0.00 42.13 4.00
76 77 7.254932 GGGCTCAGTTAAGCTTATTTATGACAG 60.255 40.741 7.08 0.00 42.13 3.51
77 78 6.542370 GGGCTCAGTTAAGCTTATTTATGACA 59.458 38.462 7.08 0.00 42.13 3.58
78 79 6.292919 CGGGCTCAGTTAAGCTTATTTATGAC 60.293 42.308 7.08 1.19 42.13 3.06
79 80 5.758296 CGGGCTCAGTTAAGCTTATTTATGA 59.242 40.000 7.08 8.31 42.13 2.15
80 81 5.758296 TCGGGCTCAGTTAAGCTTATTTATG 59.242 40.000 7.08 4.45 42.13 1.90
81 82 5.925509 TCGGGCTCAGTTAAGCTTATTTAT 58.074 37.500 7.08 0.00 42.13 1.40
82 83 5.347620 TCGGGCTCAGTTAAGCTTATTTA 57.652 39.130 7.08 0.00 42.13 1.40
83 84 4.216411 TCGGGCTCAGTTAAGCTTATTT 57.784 40.909 7.08 0.00 42.13 1.40
84 85 3.906720 TCGGGCTCAGTTAAGCTTATT 57.093 42.857 7.08 0.00 42.13 1.40
85 86 3.244249 GGATCGGGCTCAGTTAAGCTTAT 60.244 47.826 7.08 0.00 42.13 1.73
86 87 2.102588 GGATCGGGCTCAGTTAAGCTTA 59.897 50.000 0.86 0.86 42.13 3.09
87 88 1.134371 GGATCGGGCTCAGTTAAGCTT 60.134 52.381 3.48 3.48 42.13 3.74
88 89 0.466124 GGATCGGGCTCAGTTAAGCT 59.534 55.000 0.00 0.00 42.13 3.74
89 90 0.876342 CGGATCGGGCTCAGTTAAGC 60.876 60.000 0.00 0.00 41.73 3.09
90 91 0.876342 GCGGATCGGGCTCAGTTAAG 60.876 60.000 2.13 0.00 0.00 1.85
91 92 1.143183 GCGGATCGGGCTCAGTTAA 59.857 57.895 2.13 0.00 0.00 2.01
92 93 2.792947 GGCGGATCGGGCTCAGTTA 61.793 63.158 18.13 0.00 0.00 2.24
93 94 4.162690 GGCGGATCGGGCTCAGTT 62.163 66.667 18.13 0.00 0.00 3.16
97 98 4.726351 GATCGGCGGATCGGGCTC 62.726 72.222 21.82 11.67 39.72 4.70
104 105 0.811616 GAAAGCACTGATCGGCGGAT 60.812 55.000 7.21 6.45 34.96 4.18
105 106 1.447838 GAAAGCACTGATCGGCGGA 60.448 57.895 7.21 0.00 34.54 5.54
106 107 1.448540 AGAAAGCACTGATCGGCGG 60.449 57.895 7.21 0.00 34.54 6.13
107 108 1.712081 CAGAAAGCACTGATCGGCG 59.288 57.895 0.00 0.00 39.94 6.46
108 109 1.427020 GCAGAAAGCACTGATCGGC 59.573 57.895 0.00 0.00 44.79 5.54
118 119 4.794169 TCCGTAATCTTTTTGCAGAAAGC 58.206 39.130 21.68 9.26 45.96 3.51
119 120 6.578919 GTCTTCCGTAATCTTTTTGCAGAAAG 59.421 38.462 20.73 20.73 37.85 2.62
120 121 6.038825 TGTCTTCCGTAATCTTTTTGCAGAAA 59.961 34.615 2.07 2.07 0.00 2.52
121 122 5.529430 TGTCTTCCGTAATCTTTTTGCAGAA 59.471 36.000 0.00 0.00 0.00 3.02
122 123 5.049680 GTGTCTTCCGTAATCTTTTTGCAGA 60.050 40.000 0.00 0.00 0.00 4.26
123 124 5.147162 GTGTCTTCCGTAATCTTTTTGCAG 58.853 41.667 0.00 0.00 0.00 4.41
124 125 4.319190 CGTGTCTTCCGTAATCTTTTTGCA 60.319 41.667 0.00 0.00 0.00 4.08
125 126 4.148891 CGTGTCTTCCGTAATCTTTTTGC 58.851 43.478 0.00 0.00 0.00 3.68
126 127 4.212636 ACCGTGTCTTCCGTAATCTTTTTG 59.787 41.667 0.00 0.00 0.00 2.44
127 128 4.212636 CACCGTGTCTTCCGTAATCTTTTT 59.787 41.667 0.00 0.00 0.00 1.94
128 129 3.744426 CACCGTGTCTTCCGTAATCTTTT 59.256 43.478 0.00 0.00 0.00 2.27
129 130 3.243975 ACACCGTGTCTTCCGTAATCTTT 60.244 43.478 0.00 0.00 0.00 2.52
130 131 2.298163 ACACCGTGTCTTCCGTAATCTT 59.702 45.455 0.00 0.00 0.00 2.40
131 132 1.891150 ACACCGTGTCTTCCGTAATCT 59.109 47.619 0.00 0.00 0.00 2.40
132 133 2.358939 ACACCGTGTCTTCCGTAATC 57.641 50.000 0.00 0.00 0.00 1.75
133 134 2.825861 AACACCGTGTCTTCCGTAAT 57.174 45.000 4.23 0.00 0.00 1.89
134 135 2.600470 AAACACCGTGTCTTCCGTAA 57.400 45.000 4.23 0.00 0.00 3.18
135 136 2.600470 AAAACACCGTGTCTTCCGTA 57.400 45.000 4.23 0.00 0.00 4.02
136 137 1.741528 AAAAACACCGTGTCTTCCGT 58.258 45.000 4.23 0.00 0.00 4.69
153 154 9.039870 CCACTACAATACATTTCTTTTGCAAAA 57.960 29.630 22.61 22.61 0.00 2.44
154 155 8.200792 ACCACTACAATACATTTCTTTTGCAAA 58.799 29.630 8.05 8.05 0.00 3.68
155 156 7.721402 ACCACTACAATACATTTCTTTTGCAA 58.279 30.769 0.00 0.00 0.00 4.08
156 157 7.283625 ACCACTACAATACATTTCTTTTGCA 57.716 32.000 0.00 0.00 0.00 4.08
157 158 8.587952 AAACCACTACAATACATTTCTTTTGC 57.412 30.769 0.00 0.00 0.00 3.68
159 160 9.458374 CGAAAACCACTACAATACATTTCTTTT 57.542 29.630 0.00 0.00 0.00 2.27
160 161 7.593644 GCGAAAACCACTACAATACATTTCTTT 59.406 33.333 0.00 0.00 0.00 2.52
161 162 7.081976 GCGAAAACCACTACAATACATTTCTT 58.918 34.615 0.00 0.00 0.00 2.52
162 163 6.205853 TGCGAAAACCACTACAATACATTTCT 59.794 34.615 0.00 0.00 0.00 2.52
163 164 6.375377 TGCGAAAACCACTACAATACATTTC 58.625 36.000 0.00 0.00 0.00 2.17
164 165 6.320494 TGCGAAAACCACTACAATACATTT 57.680 33.333 0.00 0.00 0.00 2.32
165 166 5.950758 TGCGAAAACCACTACAATACATT 57.049 34.783 0.00 0.00 0.00 2.71
166 167 5.239744 TGTTGCGAAAACCACTACAATACAT 59.760 36.000 0.00 0.00 0.00 2.29
167 168 4.575236 TGTTGCGAAAACCACTACAATACA 59.425 37.500 0.00 0.00 0.00 2.29
168 169 4.907582 GTGTTGCGAAAACCACTACAATAC 59.092 41.667 0.00 0.00 0.00 1.89
169 170 4.817464 AGTGTTGCGAAAACCACTACAATA 59.183 37.500 0.00 0.00 0.00 1.90
170 171 3.630312 AGTGTTGCGAAAACCACTACAAT 59.370 39.130 0.00 0.00 0.00 2.71
171 172 3.011119 AGTGTTGCGAAAACCACTACAA 58.989 40.909 0.00 0.00 0.00 2.41
172 173 2.634600 AGTGTTGCGAAAACCACTACA 58.365 42.857 0.00 0.00 0.00 2.74
173 174 3.181504 ACAAGTGTTGCGAAAACCACTAC 60.182 43.478 0.08 0.00 0.00 2.73
174 175 3.011119 ACAAGTGTTGCGAAAACCACTA 58.989 40.909 0.08 0.00 0.00 2.74
175 176 1.816224 ACAAGTGTTGCGAAAACCACT 59.184 42.857 0.00 0.00 0.00 4.00
176 177 2.159435 AGACAAGTGTTGCGAAAACCAC 60.159 45.455 0.00 0.00 0.00 4.16
177 178 2.088423 AGACAAGTGTTGCGAAAACCA 58.912 42.857 0.00 0.00 0.00 3.67
178 179 2.844122 AGACAAGTGTTGCGAAAACC 57.156 45.000 0.00 0.00 0.00 3.27
179 180 3.753842 TGAAGACAAGTGTTGCGAAAAC 58.246 40.909 0.00 0.00 0.00 2.43
180 181 4.427096 TTGAAGACAAGTGTTGCGAAAA 57.573 36.364 0.00 0.00 0.00 2.29
181 182 4.083003 ACTTTGAAGACAAGTGTTGCGAAA 60.083 37.500 0.00 0.00 37.32 3.46
182 183 3.438781 ACTTTGAAGACAAGTGTTGCGAA 59.561 39.130 0.00 0.00 37.32 4.70
183 184 3.006940 ACTTTGAAGACAAGTGTTGCGA 58.993 40.909 0.00 0.00 37.32 5.10
184 185 3.100817 CACTTTGAAGACAAGTGTTGCG 58.899 45.455 4.89 0.00 37.32 4.85
185 186 3.119495 ACCACTTTGAAGACAAGTGTTGC 60.119 43.478 10.96 0.00 37.32 4.17
186 187 4.414852 CACCACTTTGAAGACAAGTGTTG 58.585 43.478 10.96 4.42 37.32 3.33
187 188 3.443681 CCACCACTTTGAAGACAAGTGTT 59.556 43.478 10.96 0.00 37.32 3.32
188 189 3.016736 CCACCACTTTGAAGACAAGTGT 58.983 45.455 10.96 0.00 37.32 3.55
189 190 3.016736 ACCACCACTTTGAAGACAAGTG 58.983 45.455 5.92 5.92 37.32 3.16
190 191 3.366052 ACCACCACTTTGAAGACAAGT 57.634 42.857 0.00 0.00 37.32 3.16
191 192 4.718940 AAACCACCACTTTGAAGACAAG 57.281 40.909 0.00 0.00 37.32 3.16
192 193 4.770010 AGAAAACCACCACTTTGAAGACAA 59.230 37.500 0.00 0.00 0.00 3.18
193 194 4.157656 CAGAAAACCACCACTTTGAAGACA 59.842 41.667 0.00 0.00 0.00 3.41
194 195 4.672409 CAGAAAACCACCACTTTGAAGAC 58.328 43.478 0.00 0.00 0.00 3.01
195 196 3.130340 GCAGAAAACCACCACTTTGAAGA 59.870 43.478 0.00 0.00 0.00 2.87
196 197 3.119173 TGCAGAAAACCACCACTTTGAAG 60.119 43.478 0.00 0.00 0.00 3.02
197 198 2.828520 TGCAGAAAACCACCACTTTGAA 59.171 40.909 0.00 0.00 0.00 2.69
198 199 2.451490 TGCAGAAAACCACCACTTTGA 58.549 42.857 0.00 0.00 0.00 2.69
199 200 2.957491 TGCAGAAAACCACCACTTTG 57.043 45.000 0.00 0.00 0.00 2.77
200 201 4.486125 AATTGCAGAAAACCACCACTTT 57.514 36.364 0.00 0.00 0.00 2.66
201 202 4.486125 AAATTGCAGAAAACCACCACTT 57.514 36.364 0.00 0.00 0.00 3.16
202 203 4.649218 AGTAAATTGCAGAAAACCACCACT 59.351 37.500 0.00 0.00 0.00 4.00
203 204 4.944048 AGTAAATTGCAGAAAACCACCAC 58.056 39.130 0.00 0.00 0.00 4.16
204 205 4.892934 AGAGTAAATTGCAGAAAACCACCA 59.107 37.500 0.00 0.00 0.00 4.17
205 206 5.453567 AGAGTAAATTGCAGAAAACCACC 57.546 39.130 0.00 0.00 0.00 4.61
206 207 6.753897 CAAGAGTAAATTGCAGAAAACCAC 57.246 37.500 0.00 0.00 0.00 4.16
225 226 2.809446 CCGATGATACGTTCTGCAAGA 58.191 47.619 0.00 0.00 44.68 3.02
226 227 1.258982 GCCGATGATACGTTCTGCAAG 59.741 52.381 0.00 0.00 0.00 4.01
227 228 1.286501 GCCGATGATACGTTCTGCAA 58.713 50.000 0.00 0.00 0.00 4.08
228 229 0.529773 GGCCGATGATACGTTCTGCA 60.530 55.000 0.00 0.00 0.00 4.41
229 230 1.548973 CGGCCGATGATACGTTCTGC 61.549 60.000 24.07 0.00 0.00 4.26
230 231 0.939577 CCGGCCGATGATACGTTCTG 60.940 60.000 30.73 0.00 0.00 3.02
231 232 1.362717 CCGGCCGATGATACGTTCT 59.637 57.895 30.73 0.00 0.00 3.01
232 233 1.066918 ACCGGCCGATGATACGTTC 59.933 57.895 30.73 0.00 0.00 3.95
233 234 1.227147 CACCGGCCGATGATACGTT 60.227 57.895 30.73 0.00 0.00 3.99
234 235 2.415843 CACCGGCCGATGATACGT 59.584 61.111 30.73 11.48 0.00 3.57
235 236 2.355837 CCACCGGCCGATGATACG 60.356 66.667 30.73 10.69 0.00 3.06
236 237 1.594293 CACCACCGGCCGATGATAC 60.594 63.158 30.73 0.00 0.00 2.24
237 238 2.802724 CCACCACCGGCCGATGATA 61.803 63.158 30.73 0.00 0.00 2.15
238 239 4.175337 CCACCACCGGCCGATGAT 62.175 66.667 30.73 1.61 0.00 2.45
240 241 4.715523 AACCACCACCGGCCGATG 62.716 66.667 30.73 22.93 0.00 3.84
241 242 4.715523 CAACCACCACCGGCCGAT 62.716 66.667 30.73 6.36 0.00 4.18
246 247 4.954970 AGCTGCAACCACCACCGG 62.955 66.667 0.00 0.00 0.00 5.28
247 248 2.906897 AAGCTGCAACCACCACCG 60.907 61.111 1.02 0.00 0.00 4.94
248 249 2.730094 CAAGCTGCAACCACCACC 59.270 61.111 1.02 0.00 0.00 4.61
249 250 2.028043 GCAAGCTGCAACCACCAC 59.972 61.111 1.02 0.00 44.26 4.16
259 260 3.458163 CCATGGGGCAGCAAGCTG 61.458 66.667 17.35 17.35 46.15 4.24
260 261 3.534704 AACCATGGGGCAGCAAGCT 62.535 57.895 18.09 0.00 44.79 3.74
261 262 2.999063 AACCATGGGGCAGCAAGC 60.999 61.111 18.09 0.00 44.65 4.01
262 263 2.975536 CAACCATGGGGCAGCAAG 59.024 61.111 18.09 0.00 37.90 4.01
263 264 3.312718 GCAACCATGGGGCAGCAA 61.313 61.111 21.71 0.00 37.26 3.91
264 265 4.617556 TGCAACCATGGGGCAGCA 62.618 61.111 24.44 19.97 42.75 4.41
265 266 3.312718 TTGCAACCATGGGGCAGC 61.313 61.111 25.99 19.01 38.97 5.25
266 267 1.546589 ATGTTGCAACCATGGGGCAG 61.547 55.000 26.14 11.00 38.97 4.85
267 268 1.535930 ATGTTGCAACCATGGGGCA 60.536 52.632 26.14 24.44 37.90 5.36
268 269 1.218854 GATGTTGCAACCATGGGGC 59.781 57.895 26.14 19.40 37.90 5.80
269 270 1.250154 ACGATGTTGCAACCATGGGG 61.250 55.000 26.14 9.11 41.29 4.96
270 271 0.109179 CACGATGTTGCAACCATGGG 60.109 55.000 26.14 12.91 0.00 4.00
271 272 0.880441 TCACGATGTTGCAACCATGG 59.120 50.000 26.14 20.30 0.00 3.66
272 273 1.730121 GCTCACGATGTTGCAACCATG 60.730 52.381 26.14 17.63 0.00 3.66
273 274 0.523072 GCTCACGATGTTGCAACCAT 59.477 50.000 26.14 18.52 0.00 3.55
274 275 1.840630 CGCTCACGATGTTGCAACCA 61.841 55.000 26.14 14.70 43.93 3.67
275 276 1.154413 CGCTCACGATGTTGCAACC 60.154 57.895 26.14 11.20 43.93 3.77
276 277 1.793613 GCGCTCACGATGTTGCAAC 60.794 57.895 22.83 22.83 43.93 4.17
277 278 1.960763 AGCGCTCACGATGTTGCAA 60.961 52.632 2.64 0.00 43.93 4.08
278 279 2.357396 AGCGCTCACGATGTTGCA 60.357 55.556 2.64 0.00 43.93 4.08
345 346 1.600638 GGTAACCCGGAAGACCAGG 59.399 63.158 0.73 0.00 39.52 4.45
360 361 1.904771 CTCATGGGGTGAAGCGGTA 59.095 57.895 0.00 0.00 36.14 4.02
395 396 6.315393 CACCTATAAAAGCTACAATGGACGTT 59.685 38.462 0.00 0.00 0.00 3.99
396 397 5.815740 CACCTATAAAAGCTACAATGGACGT 59.184 40.000 0.00 0.00 0.00 4.34
401 402 4.024048 CCGGCACCTATAAAAGCTACAATG 60.024 45.833 0.00 0.00 0.00 2.82
402 403 4.134563 CCGGCACCTATAAAAGCTACAAT 58.865 43.478 0.00 0.00 0.00 2.71
439 440 4.295119 ACGACGACAGGGTGGCAC 62.295 66.667 9.70 9.70 0.00 5.01
449 450 3.598562 CGATGCTGCGACGACGAC 61.599 66.667 12.29 3.11 42.66 4.34
455 456 3.918220 CGGAAGCGATGCTGCGAC 61.918 66.667 3.01 0.00 39.62 5.19
458 459 2.099062 CAACGGAAGCGATGCTGC 59.901 61.111 0.00 0.00 39.62 5.25
461 462 1.366111 TTAGCCAACGGAAGCGATGC 61.366 55.000 0.00 0.00 0.00 3.91
482 483 0.315886 GGAACCGGCGGATTTTGTTT 59.684 50.000 35.78 14.90 0.00 2.83
485 486 1.506262 CTGGAACCGGCGGATTTTG 59.494 57.895 35.78 15.34 0.00 2.44
524 525 1.799258 GCAATCGGTGATGGGGATGC 61.799 60.000 0.00 0.00 0.00 3.91
532 533 0.254178 AAGGAGCTGCAATCGGTGAT 59.746 50.000 8.35 0.00 0.00 3.06
544 545 1.831652 CGACAGGGGTGAAAGGAGCT 61.832 60.000 0.00 0.00 0.00 4.09
559 560 0.387494 TGCGATTTGCTACGACGACA 60.387 50.000 0.00 0.00 46.63 4.35
591 592 1.537202 GGCAAGATGCGTCAGAAAAGT 59.463 47.619 8.99 0.00 46.21 2.66
592 593 1.135575 GGGCAAGATGCGTCAGAAAAG 60.136 52.381 8.99 0.00 46.21 2.27
600 601 4.349503 TGCTGGGGCAAGATGCGT 62.350 61.111 0.00 0.00 46.21 5.24
632 633 4.591202 CTTCAAATGATAGCGCGATTTGT 58.409 39.130 22.02 3.66 37.98 2.83
645 646 3.243839 GGTGGCAGAAAAGCTTCAAATGA 60.244 43.478 0.00 0.00 33.64 2.57
663 664 2.277084 GTCAATAGCCGTAACTGGTGG 58.723 52.381 0.00 0.00 0.00 4.61
665 666 1.820519 TCGTCAATAGCCGTAACTGGT 59.179 47.619 0.00 0.00 0.00 4.00
668 669 2.470821 GCATCGTCAATAGCCGTAACT 58.529 47.619 0.00 0.00 0.00 2.24
669 670 1.525619 GGCATCGTCAATAGCCGTAAC 59.474 52.381 0.00 0.00 37.41 2.50
689 690 3.357079 GGCTGGAACACGCCACTG 61.357 66.667 0.00 0.00 46.65 3.66
710 711 1.398390 GTGCTAGAGAAAACGGGCATG 59.602 52.381 0.00 0.00 32.38 4.06
711 712 1.679032 GGTGCTAGAGAAAACGGGCAT 60.679 52.381 0.00 0.00 32.38 4.40
719 720 1.067565 CAGCTCACGGTGCTAGAGAAA 60.068 52.381 2.51 0.00 38.92 2.52
720 721 0.528017 CAGCTCACGGTGCTAGAGAA 59.472 55.000 2.51 0.00 38.92 2.87
722 723 0.457509 CACAGCTCACGGTGCTAGAG 60.458 60.000 2.51 0.00 42.26 2.43
730 731 1.272490 TCTCCTTTACACAGCTCACGG 59.728 52.381 0.00 0.00 0.00 4.94
731 732 2.600731 CTCTCCTTTACACAGCTCACG 58.399 52.381 0.00 0.00 0.00 4.35
746 747 3.429080 CTCGCTCAGGCTGCTCTCC 62.429 68.421 10.34 0.00 36.09 3.71
753 754 3.753434 CGACCACTCGCTCAGGCT 61.753 66.667 0.00 0.00 36.09 4.58
754 755 3.749064 TCGACCACTCGCTCAGGC 61.749 66.667 0.00 0.00 39.96 4.85
756 757 2.202362 CGTCGACCACTCGCTCAG 60.202 66.667 10.58 0.00 39.96 3.35
772 773 8.574196 AAAAAGATAATGATTTTAATCGGGCG 57.426 30.769 0.00 0.00 38.26 6.13
799 800 7.587258 TGATATGGTTGGTGTAATGGGAATAA 58.413 34.615 0.00 0.00 0.00 1.40
804 805 5.384336 TGATGATATGGTTGGTGTAATGGG 58.616 41.667 0.00 0.00 0.00 4.00
808 809 6.514012 AGGATGATGATATGGTTGGTGTAA 57.486 37.500 0.00 0.00 0.00 2.41
809 810 5.279456 CGAGGATGATGATATGGTTGGTGTA 60.279 44.000 0.00 0.00 0.00 2.90
833 834 3.904571 TCAAGCAAATGTTCTCACATGC 58.095 40.909 0.00 0.00 43.34 4.06
855 856 8.553459 TGCTTTTGGTGAAATTTACTCAAAAA 57.447 26.923 17.69 11.07 34.90 1.94
908 909 2.224606 CTCTTTGCTGTCTTGCCTTCA 58.775 47.619 0.00 0.00 0.00 3.02
931 932 1.102809 CACACCCTCTTTGCTGCACA 61.103 55.000 0.00 0.00 0.00 4.57
932 933 1.656441 CACACCCTCTTTGCTGCAC 59.344 57.895 0.00 0.00 0.00 4.57
933 934 1.529010 CCACACCCTCTTTGCTGCA 60.529 57.895 0.00 0.00 0.00 4.41
934 935 0.823356 TTCCACACCCTCTTTGCTGC 60.823 55.000 0.00 0.00 0.00 5.25
935 936 1.610522 CTTTCCACACCCTCTTTGCTG 59.389 52.381 0.00 0.00 0.00 4.41
940 941 1.600916 GCGCTTTCCACACCCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
1212 1226 0.514255 TGTTGTAGGAGACGACGTCG 59.486 55.000 34.58 34.58 44.54 5.12
1332 1346 2.285368 TTCCTGGACAGCCCGGAT 60.285 61.111 0.73 0.00 44.44 4.18
1542 1557 2.604174 CGTTGCCTTGTCCACGTCC 61.604 63.158 0.00 0.00 0.00 4.79
1545 1560 2.280524 TCCGTTGCCTTGTCCACG 60.281 61.111 0.00 0.00 0.00 4.94
1682 1697 1.005984 TCGTTTGGCCGAACATCGA 60.006 52.632 30.90 21.46 43.74 3.59
1716 1731 4.728409 CTGCATCCAAGGAGCACA 57.272 55.556 8.51 0.32 34.13 4.57
1746 1761 1.076485 CTGCCTCCCAAATCCCAGG 60.076 63.158 0.00 0.00 0.00 4.45
1765 1780 5.363101 CAGCTTGATACACCACTGATGTAT 58.637 41.667 0.00 0.00 44.19 2.29
1987 2002 5.416947 AGTAATCCAGTTAGGCTTAACACG 58.583 41.667 19.57 10.52 41.33 4.49
2091 2106 3.885521 CGGGGCTCGACTCCGTAC 61.886 72.222 15.48 0.00 42.43 3.67
2238 2253 5.437191 ACCCCAGGTTCTTATAAACTCTG 57.563 43.478 0.00 0.00 27.29 3.35
2254 2269 0.032540 GCAAACTCAGCAAACCCCAG 59.967 55.000 0.00 0.00 0.00 4.45
2258 2273 0.386838 AGCAGCAAACTCAGCAAACC 59.613 50.000 0.00 0.00 0.00 3.27
2316 2331 9.912634 GCATAAATATTTGCCAACTGTACATAT 57.087 29.630 11.05 0.00 32.66 1.78
2345 2360 2.055633 TCGGCCCACTGATTCGCTA 61.056 57.895 0.00 0.00 0.00 4.26
2442 2457 6.413018 TTTGATCTGAACTCATGAATCACG 57.587 37.500 5.24 4.14 0.00 4.35
2755 2770 3.181453 TGGAAACGTGTTGTATCCCTCAA 60.181 43.478 0.00 0.00 0.00 3.02
2841 2871 6.992123 CCTATCAAACTTGCCTGTATACATCA 59.008 38.462 5.91 5.02 0.00 3.07
2842 2872 6.428159 CCCTATCAAACTTGCCTGTATACATC 59.572 42.308 5.91 2.33 0.00 3.06
2844 2874 5.427157 TCCCTATCAAACTTGCCTGTATACA 59.573 40.000 5.25 5.25 0.00 2.29
2845 2875 5.925509 TCCCTATCAAACTTGCCTGTATAC 58.074 41.667 0.00 0.00 0.00 1.47
2846 2876 6.533730 CATCCCTATCAAACTTGCCTGTATA 58.466 40.000 0.00 0.00 0.00 1.47
2847 2877 5.380043 CATCCCTATCAAACTTGCCTGTAT 58.620 41.667 0.00 0.00 0.00 2.29
2848 2878 4.780815 CATCCCTATCAAACTTGCCTGTA 58.219 43.478 0.00 0.00 0.00 2.74
2849 2879 3.624777 CATCCCTATCAAACTTGCCTGT 58.375 45.455 0.00 0.00 0.00 4.00
2850 2880 2.360165 GCATCCCTATCAAACTTGCCTG 59.640 50.000 0.00 0.00 0.00 4.85
2851 2881 2.025037 TGCATCCCTATCAAACTTGCCT 60.025 45.455 0.00 0.00 0.00 4.75
2852 2882 2.099756 GTGCATCCCTATCAAACTTGCC 59.900 50.000 0.00 0.00 0.00 4.52
2853 2883 2.099756 GGTGCATCCCTATCAAACTTGC 59.900 50.000 0.00 0.00 0.00 4.01
2854 2884 3.355378 TGGTGCATCCCTATCAAACTTG 58.645 45.455 0.00 0.00 34.77 3.16
2855 2885 3.010584 ACTGGTGCATCCCTATCAAACTT 59.989 43.478 0.00 0.00 34.77 2.66
2856 2886 2.578021 ACTGGTGCATCCCTATCAAACT 59.422 45.455 0.00 0.00 34.77 2.66
2857 2887 3.004752 ACTGGTGCATCCCTATCAAAC 57.995 47.619 0.00 0.00 34.77 2.93
2898 2942 5.530171 GCAGATCCAATACATCACATGTCTT 59.470 40.000 0.00 0.00 43.67 3.01
2899 2943 5.061853 GCAGATCCAATACATCACATGTCT 58.938 41.667 0.00 0.00 43.67 3.41
2900 2944 4.084171 CGCAGATCCAATACATCACATGTC 60.084 45.833 0.00 0.00 43.67 3.06
2901 2945 3.811497 CGCAGATCCAATACATCACATGT 59.189 43.478 0.00 0.00 46.92 3.21
2902 2946 4.060205 TCGCAGATCCAATACATCACATG 58.940 43.478 0.00 0.00 0.00 3.21
2903 2947 4.341366 TCGCAGATCCAATACATCACAT 57.659 40.909 0.00 0.00 0.00 3.21
2904 2948 3.817709 TCGCAGATCCAATACATCACA 57.182 42.857 0.00 0.00 0.00 3.58
2905 2949 4.122776 ACTTCGCAGATCCAATACATCAC 58.877 43.478 0.00 0.00 35.04 3.06
2906 2950 4.406648 ACTTCGCAGATCCAATACATCA 57.593 40.909 0.00 0.00 35.04 3.07
2907 2951 5.533482 ACTACTTCGCAGATCCAATACATC 58.467 41.667 0.00 0.00 35.04 3.06
2908 2952 5.069119 TGACTACTTCGCAGATCCAATACAT 59.931 40.000 0.00 0.00 35.04 2.29
2909 2953 4.401202 TGACTACTTCGCAGATCCAATACA 59.599 41.667 0.00 0.00 35.04 2.29
2910 2954 4.933330 TGACTACTTCGCAGATCCAATAC 58.067 43.478 0.00 0.00 35.04 1.89
2911 2955 5.105513 TGTTGACTACTTCGCAGATCCAATA 60.106 40.000 0.00 0.00 35.04 1.90
2937 2981 9.599866 CACTATGGTAATTTCTCACATGTTAGA 57.400 33.333 5.61 5.61 0.00 2.10
2952 2996 9.959721 ACAACACTAAGAAATCACTATGGTAAT 57.040 29.630 0.00 0.00 0.00 1.89
2964 3008 5.359576 TGTCCAAGCAACAACACTAAGAAAT 59.640 36.000 0.00 0.00 0.00 2.17
3018 3062 4.461198 AGTGCCACAATAGGTTATTAGGC 58.539 43.478 0.00 13.35 43.35 3.93
3141 3185 4.098044 ACACATCTCCAACTACCTGATACG 59.902 45.833 0.00 0.00 0.00 3.06
3347 3391 4.032331 GCATCTGCGTTTTAAGACTCTCTC 59.968 45.833 0.00 0.00 0.00 3.20
3348 3392 3.929610 GCATCTGCGTTTTAAGACTCTCT 59.070 43.478 0.00 0.00 0.00 3.10
3469 3513 8.524870 AAGTTTGAGCTTATTTGCACTAAATG 57.475 30.769 0.00 0.00 39.29 2.32
3470 3514 9.196552 GAAAGTTTGAGCTTATTTGCACTAAAT 57.803 29.630 0.00 0.00 41.68 1.40
3471 3515 7.651704 GGAAAGTTTGAGCTTATTTGCACTAAA 59.348 33.333 0.00 0.00 34.99 1.85
3504 3548 3.118884 AGCGAGTACATGTTTCCGGTAAT 60.119 43.478 2.30 0.00 0.00 1.89
3505 3549 2.231964 AGCGAGTACATGTTTCCGGTAA 59.768 45.455 2.30 0.00 0.00 2.85
3509 3553 1.278238 GGAGCGAGTACATGTTTCCG 58.722 55.000 2.30 6.38 0.00 4.30
3609 3691 5.880901 AGCTTCTTTGGAAAGTAGGATTGA 58.119 37.500 7.59 0.00 34.96 2.57
3611 3693 5.880901 TGAGCTTCTTTGGAAAGTAGGATT 58.119 37.500 7.59 0.00 34.96 3.01
3617 3699 5.921962 AACTTTGAGCTTCTTTGGAAAGT 57.078 34.783 0.00 0.00 35.65 2.66
3620 3702 4.956075 AGGAAACTTTGAGCTTCTTTGGAA 59.044 37.500 0.00 0.00 37.44 3.53
3637 3719 7.166691 TGTGACCAGTACTAATCTAGGAAAC 57.833 40.000 0.00 0.00 0.00 2.78
3641 3723 6.716934 ACATGTGACCAGTACTAATCTAGG 57.283 41.667 0.00 0.00 0.00 3.02
3643 3725 7.501559 GGAGTACATGTGACCAGTACTAATCTA 59.498 40.741 9.11 0.00 46.01 1.98
3652 3734 2.180276 GAGGGAGTACATGTGACCAGT 58.820 52.381 9.11 0.68 0.00 4.00
3653 3735 1.482593 GGAGGGAGTACATGTGACCAG 59.517 57.143 9.11 0.00 0.00 4.00
3654 3736 1.203250 TGGAGGGAGTACATGTGACCA 60.203 52.381 9.11 4.70 0.00 4.02
3656 3738 2.103263 GGATGGAGGGAGTACATGTGAC 59.897 54.545 9.11 3.04 0.00 3.67
3657 3739 2.398588 GGATGGAGGGAGTACATGTGA 58.601 52.381 9.11 0.00 0.00 3.58
3658 3740 1.417890 GGGATGGAGGGAGTACATGTG 59.582 57.143 9.11 0.00 0.00 3.21
3659 3741 1.009552 TGGGATGGAGGGAGTACATGT 59.990 52.381 2.69 2.69 0.00 3.21
3661 3743 2.587060 TTGGGATGGAGGGAGTACAT 57.413 50.000 0.00 0.00 0.00 2.29
3662 3744 2.352561 TTTGGGATGGAGGGAGTACA 57.647 50.000 0.00 0.00 0.00 2.90
3663 3745 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
3664 3746 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
3665 3747 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
3666 3748 4.079787 TCACTTATTTTGGGATGGAGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
3667 3749 3.855599 TCACTTATTTTGGGATGGAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
3668 3750 4.249638 TCACTTATTTTGGGATGGAGGG 57.750 45.455 0.00 0.00 0.00 4.30
3670 3752 7.123247 AGTTGAATCACTTATTTTGGGATGGAG 59.877 37.037 0.00 0.00 0.00 3.86
3672 3754 7.174107 AGTTGAATCACTTATTTTGGGATGG 57.826 36.000 0.00 0.00 0.00 3.51
3673 3755 8.928733 CAAAGTTGAATCACTTATTTTGGGATG 58.071 33.333 0.00 0.00 35.87 3.51
3676 3758 9.927668 ATACAAAGTTGAATCACTTATTTTGGG 57.072 29.630 0.00 0.00 35.87 4.12
3701 3783 8.576442 CCCAAAATAAGTGACTCAACTTTGTAT 58.424 33.333 0.00 0.00 40.77 2.29
3702 3784 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3703 3785 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3704 3786 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3705 3787 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3706 3788 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3707 3789 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3708 3790 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3709 3791 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3710 3792 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3711 3793 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3712 3794 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3713 3795 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3714 3796 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3715 3797 2.290705 ACCCTCCGTCCCAAAATAAGTG 60.291 50.000 0.00 0.00 0.00 3.16
3716 3798 1.990327 ACCCTCCGTCCCAAAATAAGT 59.010 47.619 0.00 0.00 0.00 2.24
3717 3799 2.290705 ACACCCTCCGTCCCAAAATAAG 60.291 50.000 0.00 0.00 0.00 1.73
3718 3800 1.706305 ACACCCTCCGTCCCAAAATAA 59.294 47.619 0.00 0.00 0.00 1.40
3719 3801 1.364269 ACACCCTCCGTCCCAAAATA 58.636 50.000 0.00 0.00 0.00 1.40
3720 3802 1.280998 CTACACCCTCCGTCCCAAAAT 59.719 52.381 0.00 0.00 0.00 1.82
3721 3803 0.688487 CTACACCCTCCGTCCCAAAA 59.312 55.000 0.00 0.00 0.00 2.44
3722 3804 0.472352 ACTACACCCTCCGTCCCAAA 60.472 55.000 0.00 0.00 0.00 3.28
3723 3805 0.409092 TACTACACCCTCCGTCCCAA 59.591 55.000 0.00 0.00 0.00 4.12
3724 3806 0.632835 ATACTACACCCTCCGTCCCA 59.367 55.000 0.00 0.00 0.00 4.37
3725 3807 1.785647 AATACTACACCCTCCGTCCC 58.214 55.000 0.00 0.00 0.00 4.46
3726 3808 5.295152 CAATAAATACTACACCCTCCGTCC 58.705 45.833 0.00 0.00 0.00 4.79
3727 3809 5.069516 TCCAATAAATACTACACCCTCCGTC 59.930 44.000 0.00 0.00 0.00 4.79
3728 3810 4.964262 TCCAATAAATACTACACCCTCCGT 59.036 41.667 0.00 0.00 0.00 4.69
3729 3811 5.540400 TCCAATAAATACTACACCCTCCG 57.460 43.478 0.00 0.00 0.00 4.63
3730 3812 7.287810 ACAATCCAATAAATACTACACCCTCC 58.712 38.462 0.00 0.00 0.00 4.30
3731 3813 8.747538 AACAATCCAATAAATACTACACCCTC 57.252 34.615 0.00 0.00 0.00 4.30
3732 3814 9.541884 AAAACAATCCAATAAATACTACACCCT 57.458 29.630 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.