Multiple sequence alignment - TraesCS7B01G202600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G202600 chr7B 100.000 5607 0 0 1 5607 371738647 371733041 0.000000e+00 10355.0
1 TraesCS7B01G202600 chr7B 97.006 167 5 0 1791 1957 710104884 710105050 1.190000e-71 281.0
2 TraesCS7B01G202600 chr7B 97.006 167 5 0 1791 1957 710116493 710116659 1.190000e-71 281.0
3 TraesCS7B01G202600 chr7B 97.006 167 5 0 1791 1957 710127593 710127759 1.190000e-71 281.0
4 TraesCS7B01G202600 chr7B 96.951 164 5 0 1792 1955 64695459 64695622 5.530000e-70 276.0
5 TraesCS7B01G202600 chr7B 84.946 93 10 2 4320 4412 570466640 570466728 2.150000e-14 91.6
6 TraesCS7B01G202600 chr7A 97.904 1145 22 1 1954 3098 424319545 424318403 0.000000e+00 1980.0
7 TraesCS7B01G202600 chr7A 93.770 931 34 5 4372 5301 424317122 424316215 0.000000e+00 1376.0
8 TraesCS7B01G202600 chr7A 91.088 864 30 13 833 1649 424320498 424319635 0.000000e+00 1125.0
9 TraesCS7B01G202600 chr7A 98.257 631 6 2 3717 4343 424317751 424317122 0.000000e+00 1099.0
10 TraesCS7B01G202600 chr7A 97.414 580 10 3 3155 3731 424318399 424317822 0.000000e+00 983.0
11 TraesCS7B01G202600 chr7A 97.872 94 2 0 1700 1793 424319637 424319544 4.490000e-36 163.0
12 TraesCS7B01G202600 chr7A 98.485 66 1 0 3095 3160 454049087 454049022 3.550000e-22 117.0
13 TraesCS7B01G202600 chr5B 93.309 837 50 5 1 834 648339852 648339019 0.000000e+00 1230.0
14 TraesCS7B01G202600 chr5B 92.951 837 53 5 1 834 648315343 648316176 0.000000e+00 1214.0
15 TraesCS7B01G202600 chr7D 91.667 900 46 7 3156 4033 376561532 376560640 0.000000e+00 1219.0
16 TraesCS7B01G202600 chr7D 89.032 1012 51 22 833 1795 376563765 376562765 0.000000e+00 1199.0
17 TraesCS7B01G202600 chr7D 88.549 1013 67 14 2038 3015 376562709 376561711 0.000000e+00 1182.0
18 TraesCS7B01G202600 chr7D 90.441 544 38 10 4467 5009 376560292 376559762 0.000000e+00 704.0
19 TraesCS7B01G202600 chr7D 91.403 221 8 5 4102 4322 376560620 376560411 5.490000e-75 292.0
20 TraesCS7B01G202600 chr7D 95.833 168 7 0 5337 5504 235502402 235502569 7.160000e-69 272.0
21 TraesCS7B01G202600 chr7D 84.211 285 24 13 5061 5344 376559756 376559492 2.000000e-64 257.0
22 TraesCS7B01G202600 chr7D 95.714 70 3 0 4410 4479 376560386 376560317 4.590000e-21 113.0
23 TraesCS7B01G202600 chr7D 84.906 106 11 3 5502 5607 376559495 376559395 9.940000e-18 102.0
24 TraesCS7B01G202600 chr7D 95.745 47 1 1 1974 2019 376562756 376562710 2.170000e-09 75.0
25 TraesCS7B01G202600 chr1A 92.593 837 55 3 1 834 16537719 16536887 0.000000e+00 1195.0
26 TraesCS7B01G202600 chr1A 95.714 70 1 2 3089 3158 66770164 66770231 1.650000e-20 111.0
27 TraesCS7B01G202600 chr1A 86.667 75 4 4 4321 4395 171007967 171007899 1.670000e-10 78.7
28 TraesCS7B01G202600 chr3A 93.350 812 44 4 1 802 730690990 730691801 0.000000e+00 1192.0
29 TraesCS7B01G202600 chr3A 93.913 115 5 2 724 836 730691802 730691916 7.470000e-39 172.0
30 TraesCS7B01G202600 chr4B 91.839 772 57 5 67 834 258377956 258378725 0.000000e+00 1072.0
31 TraesCS7B01G202600 chr4B 90.217 92 3 2 4320 4411 656162704 656162619 1.280000e-21 115.0
32 TraesCS7B01G202600 chr4B 97.059 68 0 2 3094 3161 339894687 339894752 4.590000e-21 113.0
33 TraesCS7B01G202600 chr5A 88.186 838 66 17 1 834 174798642 174799450 0.000000e+00 968.0
34 TraesCS7B01G202600 chr5A 83.871 93 9 2 4321 4413 557345853 557345939 3.600000e-12 84.2
35 TraesCS7B01G202600 chr5A 82.474 97 8 5 4321 4415 313311209 313311120 6.020000e-10 76.8
36 TraesCS7B01G202600 chr6A 92.724 646 41 3 195 834 449587619 449588264 0.000000e+00 928.0
37 TraesCS7B01G202600 chr6A 97.006 167 5 0 1 167 449587453 449587619 1.190000e-71 281.0
38 TraesCS7B01G202600 chr6A 80.612 98 12 7 4321 4416 500088295 500088387 1.010000e-07 69.4
39 TraesCS7B01G202600 chrUn 93.643 409 25 1 125 533 477884337 477883930 1.340000e-170 610.0
40 TraesCS7B01G202600 chr2B 97.126 174 5 0 1789 1962 180618126 180617953 1.530000e-75 294.0
41 TraesCS7B01G202600 chr2B 95.055 182 7 1 1784 1963 254691615 254691796 9.190000e-73 285.0
42 TraesCS7B01G202600 chr2B 97.561 164 4 0 5341 5504 485894157 485894320 1.190000e-71 281.0
43 TraesCS7B01G202600 chr2B 97.006 167 5 0 5338 5504 738059923 738060089 1.190000e-71 281.0
44 TraesCS7B01G202600 chr2B 96.450 169 5 1 1788 1956 484593331 484593498 1.540000e-70 278.0
45 TraesCS7B01G202600 chr2B 96.933 163 5 0 5341 5503 26101759 26101921 1.990000e-69 274.0
46 TraesCS7B01G202600 chr2B 90.123 81 6 2 3080 3160 142246555 142246477 2.760000e-18 104.0
47 TraesCS7B01G202600 chr2B 91.489 47 4 0 4058 4104 731716699 731716745 1.300000e-06 65.8
48 TraesCS7B01G202600 chr2B 89.362 47 5 0 4058 4104 655524106 655524152 6.070000e-05 60.2
49 TraesCS7B01G202600 chr6B 95.322 171 8 0 1789 1959 686855162 686854992 7.160000e-69 272.0
50 TraesCS7B01G202600 chr6B 93.750 176 9 2 5332 5506 529734260 529734086 4.310000e-66 263.0
51 TraesCS7B01G202600 chr6B 98.462 65 1 0 3097 3161 493033409 493033345 1.280000e-21 115.0
52 TraesCS7B01G202600 chr2D 93.923 181 9 2 5332 5511 90033371 90033192 7.160000e-69 272.0
53 TraesCS7B01G202600 chr3D 95.833 168 6 1 5337 5503 486424954 486424787 2.570000e-68 270.0
54 TraesCS7B01G202600 chr3D 98.485 66 0 1 3093 3158 261157002 261156938 1.280000e-21 115.0
55 TraesCS7B01G202600 chr3D 82.796 93 10 2 4321 4413 455100575 455100661 1.670000e-10 78.7
56 TraesCS7B01G202600 chr5D 94.767 172 9 0 5335 5506 53869707 53869536 9.260000e-68 268.0
57 TraesCS7B01G202600 chr6D 94.253 174 9 1 5330 5503 81746940 81746768 1.200000e-66 265.0
58 TraesCS7B01G202600 chr1D 91.623 191 13 3 1767 1955 178466281 178466470 1.550000e-65 261.0
59 TraesCS7B01G202600 chr3B 100.000 64 0 0 3098 3161 56031850 56031787 9.870000e-23 119.0
60 TraesCS7B01G202600 chr3B 92.308 78 3 3 3097 3174 284422058 284421984 2.140000e-19 108.0
61 TraesCS7B01G202600 chr3B 81.915 94 11 3 4321 4414 765312745 765312658 2.170000e-09 75.0
62 TraesCS7B01G202600 chr1B 95.775 71 1 2 3088 3158 676047102 676047034 4.590000e-21 113.0
63 TraesCS7B01G202600 chr2A 80.612 98 10 5 4320 4416 10589030 10588941 3.630000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G202600 chr7B 371733041 371738647 5606 True 10355.000000 10355 100.000000 1 5607 1 chr7B.!!$R1 5606
1 TraesCS7B01G202600 chr7A 424316215 424320498 4283 True 1121.000000 1980 96.050833 833 5301 6 chr7A.!!$R2 4468
2 TraesCS7B01G202600 chr5B 648339019 648339852 833 True 1230.000000 1230 93.309000 1 834 1 chr5B.!!$R1 833
3 TraesCS7B01G202600 chr5B 648315343 648316176 833 False 1214.000000 1214 92.951000 1 834 1 chr5B.!!$F1 833
4 TraesCS7B01G202600 chr7D 376559395 376563765 4370 True 571.444444 1219 90.185333 833 5607 9 chr7D.!!$R1 4774
5 TraesCS7B01G202600 chr1A 16536887 16537719 832 True 1195.000000 1195 92.593000 1 834 1 chr1A.!!$R1 833
6 TraesCS7B01G202600 chr3A 730690990 730691916 926 False 682.000000 1192 93.631500 1 836 2 chr3A.!!$F1 835
7 TraesCS7B01G202600 chr4B 258377956 258378725 769 False 1072.000000 1072 91.839000 67 834 1 chr4B.!!$F1 767
8 TraesCS7B01G202600 chr5A 174798642 174799450 808 False 968.000000 968 88.186000 1 834 1 chr5A.!!$F1 833
9 TraesCS7B01G202600 chr6A 449587453 449588264 811 False 604.500000 928 94.865000 1 834 2 chr6A.!!$F2 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 612 0.180406 GCAGGGGATGAACGGTATGT 59.820 55.000 0.00 0.00 0.00 2.29 F
1518 1658 0.179086 TTGAGTTGAGAGTGCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57 F
1578 1718 0.241749 ATTGCATCCACAACAGTGCG 59.758 50.000 0.00 0.00 40.34 5.34 F
1592 1732 0.895530 AGTGCGACTTAAGCTGCCTA 59.104 50.000 14.78 0.00 35.28 3.93 F
1593 1733 1.482593 AGTGCGACTTAAGCTGCCTAT 59.517 47.619 14.78 1.25 35.28 2.57 F
1963 2116 1.755380 ACGGAGGGAGTAGTACATTGC 59.245 52.381 2.52 0.00 0.00 3.56 F
2693 2880 3.305608 GGTTGCTTGTGAAAGGGATGAAG 60.306 47.826 0.00 0.00 0.00 3.02 F
3112 3394 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2096 1.755380 GCAATGTACTACTCCCTCCGT 59.245 52.381 0.0 0.0 0.0 4.69 R
3090 3372 0.179081 GACGGAGGGAGTATGTTGGC 60.179 60.000 0.0 0.0 0.0 4.52 R
3099 3381 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.0 0.0 0.0 4.30 R
3100 3382 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.0 0.0 0.0 4.20 R
3101 3383 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.0 0.0 0.0 4.30 R
3102 3384 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.0 0.0 0.0 4.30 R
4393 4789 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.0 0.0 0.0 2.74 R
4852 5282 0.036952 ACTCCATTGACTCAGGCGTG 60.037 55.000 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 9.736023 GAAAAGGCATATTAAAAGATCGAACAT 57.264 29.630 0.00 0.00 0.00 2.71
129 130 9.667107 TTAAAAGATCGAACATGGTTCTAAGAT 57.333 29.630 7.43 3.35 0.00 2.40
245 246 3.311322 CACCGCTTGACAACTCTTTGTAA 59.689 43.478 0.00 0.00 46.43 2.41
274 275 1.681486 GCCACTCCCTGCTCCTAGAC 61.681 65.000 0.00 0.00 0.00 2.59
282 283 2.487445 CCCTGCTCCTAGACGACAGATA 60.487 54.545 0.00 0.00 0.00 1.98
333 334 0.608035 GGAAACAGGGAACGGCATGA 60.608 55.000 0.00 0.00 0.00 3.07
382 383 2.996168 AAGGACACTGACAGCGTGGC 62.996 60.000 0.00 0.00 39.70 5.01
437 445 0.396417 ACCAGATCCAGAGGAGACGG 60.396 60.000 0.00 0.00 34.05 4.79
463 471 3.065095 CCGTACGGGTGAAACAAAGAAAA 59.935 43.478 27.00 0.00 39.98 2.29
472 480 5.826208 GGTGAAACAAAGAAAAGACCTAGGA 59.174 40.000 17.98 0.00 39.98 2.94
486 497 7.921041 AAGACCTAGGATGATTCATAAGTCA 57.079 36.000 17.98 0.00 33.85 3.41
497 508 7.666063 TGATTCATAAGTCAAGGATCTGAGA 57.334 36.000 0.00 0.00 0.00 3.27
524 535 2.017049 GCAGAAGAACGGCCACATATT 58.983 47.619 2.24 0.00 33.80 1.28
535 546 2.202878 ACATATTGCGTCGCGGCT 60.203 55.556 9.90 1.91 0.00 5.52
601 612 0.180406 GCAGGGGATGAACGGTATGT 59.820 55.000 0.00 0.00 0.00 2.29
603 614 0.837272 AGGGGATGAACGGTATGTGG 59.163 55.000 0.00 0.00 0.00 4.17
719 732 0.940519 TACGGTGAGCCAAAACGACG 60.941 55.000 0.00 0.00 34.09 5.12
819 915 1.907255 GGGTCCTAGGTAGCTGTGTTT 59.093 52.381 9.08 0.00 0.00 2.83
854 950 6.857964 GCAATATCTCATTGTGATTAAACCGG 59.142 38.462 0.00 0.00 0.00 5.28
858 954 5.175859 TCTCATTGTGATTAAACCGGAGAC 58.824 41.667 9.46 0.00 0.00 3.36
875 971 0.712222 GACCAAACGGTTCGATCGAC 59.288 55.000 19.26 12.82 36.70 4.20
910 1006 2.029964 GGCTCACCGGTTCGTTCA 59.970 61.111 2.97 0.00 0.00 3.18
1243 1371 2.833604 GAAGCAGCTGGGCATGGACT 62.834 60.000 17.12 0.00 35.83 3.85
1400 1535 0.319297 GTGGTCGTTAGGTGCTTCGT 60.319 55.000 0.00 0.00 0.00 3.85
1480 1615 4.320714 GCACACATGACACATGAACTCAAT 60.321 41.667 16.86 0.00 0.00 2.57
1518 1658 0.179086 TTGAGTTGAGAGTGCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
1578 1718 0.241749 ATTGCATCCACAACAGTGCG 59.758 50.000 0.00 0.00 40.34 5.34
1592 1732 0.895530 AGTGCGACTTAAGCTGCCTA 59.104 50.000 14.78 0.00 35.28 3.93
1593 1733 1.482593 AGTGCGACTTAAGCTGCCTAT 59.517 47.619 14.78 1.25 35.28 2.57
1594 1734 2.693591 AGTGCGACTTAAGCTGCCTATA 59.306 45.455 14.78 0.00 35.28 1.31
1596 1736 3.675698 GTGCGACTTAAGCTGCCTATATC 59.324 47.826 14.78 0.00 35.28 1.63
1597 1737 3.254892 GCGACTTAAGCTGCCTATATCC 58.745 50.000 1.29 0.00 0.00 2.59
1618 1769 3.322254 CCCCTCTACTCATGCGTTAAGAT 59.678 47.826 0.00 0.00 0.00 2.40
1689 1841 8.665643 TTCCACTTCTATTTTCGTAACTTCAA 57.334 30.769 0.00 0.00 0.00 2.69
1692 1844 9.166126 CCACTTCTATTTTCGTAACTTCAAAAC 57.834 33.333 0.00 0.00 0.00 2.43
1779 1932 3.769300 TGCATGTGTATACCACTGTCTCT 59.231 43.478 0.00 0.00 44.81 3.10
1795 1948 9.039870 CCACTGTCTCTTTTTGATGATATACTC 57.960 37.037 0.00 0.00 0.00 2.59
1796 1949 9.039870 CACTGTCTCTTTTTGATGATATACTCC 57.960 37.037 0.00 0.00 0.00 3.85
1797 1950 8.207545 ACTGTCTCTTTTTGATGATATACTCCC 58.792 37.037 0.00 0.00 0.00 4.30
1798 1951 8.324191 TGTCTCTTTTTGATGATATACTCCCT 57.676 34.615 0.00 0.00 0.00 4.20
1799 1952 8.424918 TGTCTCTTTTTGATGATATACTCCCTC 58.575 37.037 0.00 0.00 0.00 4.30
1800 1953 7.875554 GTCTCTTTTTGATGATATACTCCCTCC 59.124 40.741 0.00 0.00 0.00 4.30
1801 1954 6.759272 TCTTTTTGATGATATACTCCCTCCG 58.241 40.000 0.00 0.00 0.00 4.63
1802 1955 6.326583 TCTTTTTGATGATATACTCCCTCCGT 59.673 38.462 0.00 0.00 0.00 4.69
1803 1956 6.494666 TTTTGATGATATACTCCCTCCGTT 57.505 37.500 0.00 0.00 0.00 4.44
1804 1957 5.723672 TTGATGATATACTCCCTCCGTTC 57.276 43.478 0.00 0.00 0.00 3.95
1805 1958 4.087182 TGATGATATACTCCCTCCGTTCC 58.913 47.826 0.00 0.00 0.00 3.62
1806 1959 3.897657 TGATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
1807 1960 5.014860 TGATGATATACTCCCTCCGTTCCTA 59.985 44.000 0.00 0.00 0.00 2.94
1808 1961 5.329191 TGATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
1809 1962 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
1810 1963 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
1811 1964 7.472741 TGATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
1812 1965 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
1813 1966 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
1814 1967 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1815 1968 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1816 1969 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1817 1970 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1818 1971 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1819 1972 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1820 1973 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1821 1974 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1822 1975 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1838 1991 9.528018 TTTGTCTTTTTAGACATTCAAATGGAC 57.472 29.630 8.65 3.50 46.61 4.02
1839 1992 8.463930 TGTCTTTTTAGACATTCAAATGGACT 57.536 30.769 7.58 8.27 43.09 3.85
1840 1993 9.567776 TGTCTTTTTAGACATTCAAATGGACTA 57.432 29.630 7.58 7.47 43.09 2.59
1841 1994 9.827411 GTCTTTTTAGACATTCAAATGGACTAC 57.173 33.333 7.58 0.00 40.70 2.73
1842 1995 9.567776 TCTTTTTAGACATTCAAATGGACTACA 57.432 29.630 7.58 2.25 40.70 2.74
1844 1997 9.959749 TTTTTAGACATTCAAATGGACTACAAC 57.040 29.630 7.58 0.00 40.70 3.32
1845 1998 8.684386 TTTAGACATTCAAATGGACTACAACA 57.316 30.769 7.58 0.00 40.70 3.33
1846 1999 8.862325 TTAGACATTCAAATGGACTACAACAT 57.138 30.769 7.58 0.00 40.70 2.71
1847 2000 9.952030 TTAGACATTCAAATGGACTACAACATA 57.048 29.630 7.58 0.00 40.70 2.29
1848 2001 8.268850 AGACATTCAAATGGACTACAACATAC 57.731 34.615 7.58 0.00 40.70 2.39
1849 2002 7.064609 AGACATTCAAATGGACTACAACATACG 59.935 37.037 7.58 0.00 40.70 3.06
1850 2003 6.093495 ACATTCAAATGGACTACAACATACGG 59.907 38.462 7.58 0.00 40.70 4.02
1851 2004 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
1852 2005 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
1853 2006 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
1855 2008 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
1856 2009 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
1897 2050 9.907576 GATTGTAGATTCACTCATTTTACTTCG 57.092 33.333 0.00 0.00 0.00 3.79
1898 2051 8.827177 TTGTAGATTCACTCATTTTACTTCGT 57.173 30.769 0.00 0.00 0.00 3.85
1899 2052 9.917129 TTGTAGATTCACTCATTTTACTTCGTA 57.083 29.630 0.00 0.00 0.00 3.43
1905 2058 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
1906 2059 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
1907 2060 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
1908 2061 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
1909 2062 8.521176 ACTCATTTTACTTCGTATGTAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
1910 2063 9.355215 CTCATTTTACTTCGTATGTAGTCACTT 57.645 33.333 0.00 0.00 0.00 3.16
1911 2064 9.135843 TCATTTTACTTCGTATGTAGTCACTTG 57.864 33.333 0.00 0.00 0.00 3.16
1912 2065 8.922676 CATTTTACTTCGTATGTAGTCACTTGT 58.077 33.333 0.00 0.00 0.00 3.16
1913 2066 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
1914 2067 7.862741 TTACTTCGTATGTAGTCACTTGTTG 57.137 36.000 0.00 0.00 0.00 3.33
1915 2068 6.080648 ACTTCGTATGTAGTCACTTGTTGA 57.919 37.500 0.00 0.00 0.00 3.18
1916 2069 6.509656 ACTTCGTATGTAGTCACTTGTTGAA 58.490 36.000 0.00 0.00 35.39 2.69
1917 2070 6.982141 ACTTCGTATGTAGTCACTTGTTGAAA 59.018 34.615 0.00 0.00 35.39 2.69
1918 2071 7.656137 ACTTCGTATGTAGTCACTTGTTGAAAT 59.344 33.333 0.00 0.00 35.39 2.17
1919 2072 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
1920 2073 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
1921 2074 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
1922 2075 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1923 2076 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1924 2077 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1925 2078 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1926 2079 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1927 2080 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1928 2081 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1929 2082 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1930 2083 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1931 2084 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1932 2085 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1933 2086 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1949 2102 8.893727 AGAAAGACAAATATTTATGAACGGAGG 58.106 33.333 0.00 0.00 0.00 4.30
1950 2103 7.568199 AAGACAAATATTTATGAACGGAGGG 57.432 36.000 0.00 0.00 0.00 4.30
1951 2104 6.895782 AGACAAATATTTATGAACGGAGGGA 58.104 36.000 0.00 0.00 0.00 4.20
1952 2105 6.992715 AGACAAATATTTATGAACGGAGGGAG 59.007 38.462 0.00 0.00 0.00 4.30
1963 2116 1.755380 ACGGAGGGAGTAGTACATTGC 59.245 52.381 2.52 0.00 0.00 3.56
2292 2474 4.013728 TGCGTTATCCTAGCAAACCAAAT 58.986 39.130 0.00 0.00 38.01 2.32
2294 2476 4.351192 CGTTATCCTAGCAAACCAAATGC 58.649 43.478 0.00 0.00 44.15 3.56
2412 2594 9.579768 TTCGAATGGTATTCAAATGGTATTTTG 57.420 29.630 0.00 0.00 37.83 2.44
2693 2880 3.305608 GGTTGCTTGTGAAAGGGATGAAG 60.306 47.826 0.00 0.00 0.00 3.02
2844 3031 4.551671 AGTCTACTTGATGGTCCATAGCT 58.448 43.478 3.72 0.00 0.00 3.32
2891 3078 5.432885 AATTTTCAGTAGGTTGGACAACG 57.567 39.130 8.89 0.00 42.02 4.10
3068 3350 5.950544 ACCTTGTATGGACTTATGTAGCA 57.049 39.130 0.00 0.00 0.00 3.49
3072 3354 8.660435 ACCTTGTATGGACTTATGTAGCAATAT 58.340 33.333 0.00 0.00 0.00 1.28
3090 3372 8.882415 AGCAATATTTTCTGCATTTAGGATTG 57.118 30.769 0.26 0.00 41.17 2.67
3099 3381 5.067674 TCTGCATTTAGGATTGCCAACATAC 59.932 40.000 0.00 0.00 38.08 2.39
3100 3382 4.955450 TGCATTTAGGATTGCCAACATACT 59.045 37.500 0.00 0.00 38.08 2.12
3101 3383 5.067674 TGCATTTAGGATTGCCAACATACTC 59.932 40.000 0.00 0.00 38.08 2.59
3102 3384 5.507985 GCATTTAGGATTGCCAACATACTCC 60.508 44.000 0.00 0.00 36.29 3.85
3103 3385 2.736670 AGGATTGCCAACATACTCCC 57.263 50.000 0.00 0.00 36.29 4.30
3104 3386 2.208872 AGGATTGCCAACATACTCCCT 58.791 47.619 0.00 0.00 36.29 4.20
3105 3387 2.173569 AGGATTGCCAACATACTCCCTC 59.826 50.000 0.00 0.00 36.29 4.30
3106 3388 2.576615 GATTGCCAACATACTCCCTCC 58.423 52.381 0.00 0.00 0.00 4.30
3107 3389 0.251916 TTGCCAACATACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
3108 3390 0.907704 TGCCAACATACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
3109 3391 0.179081 GCCAACATACTCCCTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
3110 3392 0.464452 CCAACATACTCCCTCCGTCC 59.536 60.000 0.00 0.00 0.00 4.79
3111 3393 0.464452 CAACATACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
3112 3394 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3113 3395 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3114 3396 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
3115 3397 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
3116 3398 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3117 3399 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3118 3400 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3119 3401 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3120 3402 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3121 3403 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3122 3404 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3123 3405 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3124 3406 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3125 3407 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3126 3408 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3127 3409 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3128 3410 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3129 3411 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3130 3412 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3131 3413 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3132 3414 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3133 3415 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3134 3416 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3135 3417 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3143 3425 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3144 3426 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3145 3427 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3146 3428 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3147 3429 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3148 3430 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3193 3475 8.542926 GTTTCATAGGTAGGTCTAGGGTTAAAA 58.457 37.037 0.00 0.00 0.00 1.52
3401 3687 3.130516 CCTAAGGTCATTGCTCGACTGTA 59.869 47.826 0.00 0.00 33.73 2.74
3669 3975 2.836667 ACAAGATTCCCCATGGCAAAT 58.163 42.857 6.09 7.90 0.00 2.32
4223 4619 3.780902 TGATGTGTCGTAGTATTGCAGG 58.219 45.455 0.00 0.00 0.00 4.85
4309 4705 4.707105 TGCTGTCATACATATCTTGTGGG 58.293 43.478 0.00 0.00 39.48 4.61
4334 4730 1.054978 GGATTTACTCCCTCCGCCCT 61.055 60.000 0.00 0.00 38.19 5.19
4337 4733 3.438183 GATTTACTCCCTCCGCCCTATA 58.562 50.000 0.00 0.00 0.00 1.31
4342 4738 4.894252 ACTCCCTCCGCCCTATAATATA 57.106 45.455 0.00 0.00 0.00 0.86
4344 4740 5.209659 ACTCCCTCCGCCCTATAATATAAG 58.790 45.833 0.00 0.00 0.00 1.73
4345 4741 5.043582 ACTCCCTCCGCCCTATAATATAAGA 60.044 44.000 0.00 0.00 0.00 2.10
4346 4742 6.039415 TCCCTCCGCCCTATAATATAAGAT 57.961 41.667 0.00 0.00 0.00 2.40
4347 4743 6.075984 TCCCTCCGCCCTATAATATAAGATC 58.924 44.000 0.00 0.00 0.00 2.75
4348 4744 5.839063 CCCTCCGCCCTATAATATAAGATCA 59.161 44.000 0.00 0.00 0.00 2.92
4349 4745 6.498651 CCCTCCGCCCTATAATATAAGATCAT 59.501 42.308 0.00 0.00 0.00 2.45
4350 4746 7.016661 CCCTCCGCCCTATAATATAAGATCATT 59.983 40.741 0.00 0.00 0.00 2.57
4351 4747 8.432805 CCTCCGCCCTATAATATAAGATCATTT 58.567 37.037 0.00 0.00 0.00 2.32
4352 4748 9.838339 CTCCGCCCTATAATATAAGATCATTTT 57.162 33.333 0.00 0.00 0.00 1.82
4353 4749 9.613428 TCCGCCCTATAATATAAGATCATTTTG 57.387 33.333 0.00 0.00 0.00 2.44
4354 4750 8.345565 CCGCCCTATAATATAAGATCATTTTGC 58.654 37.037 0.00 0.00 0.00 3.68
4355 4751 8.892723 CGCCCTATAATATAAGATCATTTTGCA 58.107 33.333 0.00 0.00 0.00 4.08
4364 4760 4.367386 AGATCATTTTGCAAGCTGTAGC 57.633 40.909 0.00 0.00 42.49 3.58
4393 4789 9.492973 AAACAGCTTGCAAAACAATCTTATATT 57.507 25.926 0.00 0.00 37.72 1.28
4502 4931 0.886490 ATTCGGCGCATCATCCTTCC 60.886 55.000 10.83 0.00 0.00 3.46
4522 4951 8.387813 TCCTTCCCATGTGTTATTTAGTACTTT 58.612 33.333 0.00 0.00 0.00 2.66
4607 5036 5.126222 TGTCGAAAGCTAGAAGATGACTGAT 59.874 40.000 0.00 0.00 0.00 2.90
4754 5184 2.813754 TGACAGCTTTGGATGTAGTTGC 59.186 45.455 0.00 0.00 42.53 4.17
4757 5187 2.816087 CAGCTTTGGATGTAGTTGCACT 59.184 45.455 0.00 0.00 0.00 4.40
4777 5207 5.513495 GCACTGTCTTCAAGAGTACTAATCG 59.487 44.000 0.00 0.00 28.60 3.34
4905 5335 4.123497 ACTAATACAATCACGCAGCAGA 57.877 40.909 0.00 0.00 0.00 4.26
4953 5383 9.097946 TGATGGACTCATATCATATCTCTGTTT 57.902 33.333 0.00 0.00 32.98 2.83
4993 5423 2.376518 TGTTTCTTCTGGAGGAGGCAAT 59.623 45.455 0.00 0.00 0.00 3.56
5041 5471 3.568430 CAGATGGCATATGCTGTCACAAT 59.432 43.478 26.12 9.40 43.62 2.71
5045 5475 2.543031 GGCATATGCTGTCACAATGCAG 60.543 50.000 26.12 0.00 42.35 4.41
5046 5476 2.098607 GCATATGCTGTCACAATGCAGT 59.901 45.455 20.64 0.00 41.22 4.40
5047 5477 3.791122 GCATATGCTGTCACAATGCAGTC 60.791 47.826 20.64 0.00 41.22 3.51
5145 5576 5.447530 CCAAAATTTTGCGTCGTTTTTCTTG 59.552 36.000 22.90 3.10 36.86 3.02
5213 5644 9.103048 GTTTTGAGAATGTGTTAATCACTAACG 57.897 33.333 8.83 0.00 46.27 3.18
5214 5645 6.961359 TGAGAATGTGTTAATCACTAACGG 57.039 37.500 8.83 0.00 46.27 4.44
5258 5689 5.871396 AGTTGAGTAACTGAAGTTCCTCA 57.129 39.130 12.81 12.81 45.24 3.86
5281 5712 4.868314 ACTGAAGGACTAAGTGTGGTAC 57.132 45.455 0.00 0.00 0.00 3.34
5282 5713 3.255149 ACTGAAGGACTAAGTGTGGTACG 59.745 47.826 0.00 0.00 0.00 3.67
5316 5747 0.325671 TTGTTTTGGGGTGGCCTGAA 60.326 50.000 3.32 0.00 0.00 3.02
5329 5760 2.092429 TGGCCTGAAGAACACTGAAGTT 60.092 45.455 3.32 0.00 0.00 2.66
5344 5775 8.764524 ACACTGAAGTTGACAATCTATTACTC 57.235 34.615 0.00 0.00 0.00 2.59
5345 5776 7.819900 ACACTGAAGTTGACAATCTATTACTCC 59.180 37.037 0.00 0.00 0.00 3.85
5346 5777 7.278868 CACTGAAGTTGACAATCTATTACTCCC 59.721 40.741 0.00 0.00 0.00 4.30
5347 5778 7.181125 ACTGAAGTTGACAATCTATTACTCCCT 59.819 37.037 0.00 0.00 0.00 4.20
5348 5779 7.556844 TGAAGTTGACAATCTATTACTCCCTC 58.443 38.462 0.00 0.00 0.00 4.30
5349 5780 6.487299 AGTTGACAATCTATTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
5350 5781 5.069251 AGTTGACAATCTATTACTCCCTCCG 59.931 44.000 0.00 0.00 0.00 4.63
5351 5782 4.543689 TGACAATCTATTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
5352 5783 4.960469 TGACAATCTATTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
5353 5784 5.068723 TGACAATCTATTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
5354 5785 4.344390 ACAATCTATTACTCCCTCCGTTCC 59.656 45.833 0.00 0.00 0.00 3.62
5355 5786 3.967467 TCTATTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
5356 5787 5.595814 ATCTATTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
5357 5788 5.393068 TCTATTACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
5358 5789 5.769835 TCTATTACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
5359 5790 6.379579 TCTATTACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
5360 5791 4.748277 TTACTCCCTCCGTTCCTAAATG 57.252 45.455 0.00 0.00 0.00 2.32
5361 5792 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
5362 5793 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
5363 5794 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
5364 5795 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
5365 5796 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
5366 5797 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
5367 5798 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
5368 5799 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
5369 5800 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
5370 5801 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
5371 5802 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
5372 5803 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
5373 5804 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
5374 5805 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
5375 5806 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
5376 5807 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
5382 5813 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
5383 5814 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
5384 5815 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
5385 5816 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
5386 5817 9.522804 GTAAGTCTTTGTAGAGATTCCACTATG 57.477 37.037 0.00 0.00 0.00 2.23
5387 5818 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
5388 5819 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
5389 5820 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
5390 5821 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
5391 5822 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
5392 5823 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
5393 5824 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
5394 5825 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
5395 5826 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
5396 5827 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
5397 5828 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
5398 5829 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
5399 5830 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
5400 5831 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
5401 5832 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
5403 5834 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
5404 5835 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
5405 5836 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
5406 5837 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
5407 5838 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
5408 5839 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
5409 5840 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
5410 5841 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
5411 5842 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
5412 5843 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
5413 5844 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
5414 5845 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
5415 5846 8.576442 CCACATACGGATGTATATAGATGCATA 58.424 37.037 14.23 1.52 44.82 3.14
5443 5874 7.872113 AGTGTAGATTCATTCATTTTCCTCC 57.128 36.000 0.00 0.00 0.00 4.30
5444 5875 6.540189 AGTGTAGATTCATTCATTTTCCTCCG 59.460 38.462 0.00 0.00 0.00 4.63
5445 5876 6.316390 GTGTAGATTCATTCATTTTCCTCCGT 59.684 38.462 0.00 0.00 0.00 4.69
5446 5877 7.494625 GTGTAGATTCATTCATTTTCCTCCGTA 59.505 37.037 0.00 0.00 0.00 4.02
5447 5878 8.210946 TGTAGATTCATTCATTTTCCTCCGTAT 58.789 33.333 0.00 0.00 0.00 3.06
5448 5879 7.502120 AGATTCATTCATTTTCCTCCGTATG 57.498 36.000 0.00 0.00 0.00 2.39
5449 5880 7.056635 AGATTCATTCATTTTCCTCCGTATGT 58.943 34.615 0.00 0.00 0.00 2.29
5450 5881 8.210946 AGATTCATTCATTTTCCTCCGTATGTA 58.789 33.333 0.00 0.00 0.00 2.29
5451 5882 7.786178 TTCATTCATTTTCCTCCGTATGTAG 57.214 36.000 0.00 0.00 0.00 2.74
5452 5883 6.884832 TCATTCATTTTCCTCCGTATGTAGT 58.115 36.000 0.00 0.00 0.00 2.73
5453 5884 6.984474 TCATTCATTTTCCTCCGTATGTAGTC 59.016 38.462 0.00 0.00 0.00 2.59
5454 5885 5.272283 TCATTTTCCTCCGTATGTAGTCC 57.728 43.478 0.00 0.00 0.00 3.85
5455 5886 4.712829 TCATTTTCCTCCGTATGTAGTCCA 59.287 41.667 0.00 0.00 0.00 4.02
5456 5887 4.460948 TTTTCCTCCGTATGTAGTCCAC 57.539 45.455 0.00 0.00 0.00 4.02
5457 5888 2.062971 TCCTCCGTATGTAGTCCACC 57.937 55.000 0.00 0.00 0.00 4.61
5458 5889 1.567649 TCCTCCGTATGTAGTCCACCT 59.432 52.381 0.00 0.00 0.00 4.00
5459 5890 2.779430 TCCTCCGTATGTAGTCCACCTA 59.221 50.000 0.00 0.00 0.00 3.08
5460 5891 3.147629 CCTCCGTATGTAGTCCACCTAG 58.852 54.545 0.00 0.00 0.00 3.02
5461 5892 3.434739 CCTCCGTATGTAGTCCACCTAGT 60.435 52.174 0.00 0.00 0.00 2.57
5462 5893 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
5463 5894 3.200605 TCCGTATGTAGTCCACCTAGTGA 59.799 47.826 0.00 0.00 35.23 3.41
5464 5895 3.949754 CCGTATGTAGTCCACCTAGTGAA 59.050 47.826 0.00 0.00 35.23 3.18
5465 5896 4.400251 CCGTATGTAGTCCACCTAGTGAAA 59.600 45.833 0.00 0.00 35.23 2.69
5466 5897 5.068723 CCGTATGTAGTCCACCTAGTGAAAT 59.931 44.000 0.00 0.00 35.23 2.17
5467 5898 6.207213 CGTATGTAGTCCACCTAGTGAAATC 58.793 44.000 0.00 0.00 35.23 2.17
5468 5899 6.039493 CGTATGTAGTCCACCTAGTGAAATCT 59.961 42.308 0.00 0.00 35.23 2.40
5469 5900 5.916661 TGTAGTCCACCTAGTGAAATCTC 57.083 43.478 0.00 0.00 35.23 2.75
5470 5901 5.580998 TGTAGTCCACCTAGTGAAATCTCT 58.419 41.667 0.00 0.00 35.23 3.10
5471 5902 6.728411 TGTAGTCCACCTAGTGAAATCTCTA 58.272 40.000 0.00 0.00 35.23 2.43
5472 5903 6.602406 TGTAGTCCACCTAGTGAAATCTCTAC 59.398 42.308 0.00 0.00 35.23 2.59
5473 5904 5.580998 AGTCCACCTAGTGAAATCTCTACA 58.419 41.667 0.00 0.00 35.23 2.74
5474 5905 6.017192 AGTCCACCTAGTGAAATCTCTACAA 58.983 40.000 0.00 0.00 35.23 2.41
5475 5906 6.497259 AGTCCACCTAGTGAAATCTCTACAAA 59.503 38.462 0.00 0.00 35.23 2.83
5476 5907 6.814146 GTCCACCTAGTGAAATCTCTACAAAG 59.186 42.308 0.00 0.00 35.23 2.77
5477 5908 6.724441 TCCACCTAGTGAAATCTCTACAAAGA 59.276 38.462 0.00 0.00 35.23 2.52
5478 5909 6.814146 CCACCTAGTGAAATCTCTACAAAGAC 59.186 42.308 0.00 0.00 35.23 3.01
5479 5910 7.310113 CCACCTAGTGAAATCTCTACAAAGACT 60.310 40.741 0.00 0.00 35.23 3.24
5480 5911 8.091449 CACCTAGTGAAATCTCTACAAAGACTT 58.909 37.037 0.00 0.00 35.23 3.01
5481 5912 9.310449 ACCTAGTGAAATCTCTACAAAGACTTA 57.690 33.333 0.00 0.00 0.00 2.24
5497 5928 8.487028 ACAAAGACTTATATTTAGGACTGGAGG 58.513 37.037 0.00 0.00 0.00 4.30
5498 5929 7.619512 AAGACTTATATTTAGGACTGGAGGG 57.380 40.000 0.00 0.00 0.00 4.30
5499 5930 6.935036 AGACTTATATTTAGGACTGGAGGGA 58.065 40.000 0.00 0.00 0.00 4.20
5500 5931 7.013834 AGACTTATATTTAGGACTGGAGGGAG 58.986 42.308 0.00 0.00 0.00 4.30
5501 5932 6.694611 ACTTATATTTAGGACTGGAGGGAGT 58.305 40.000 0.00 0.00 0.00 3.85
5502 5933 7.834046 ACTTATATTTAGGACTGGAGGGAGTA 58.166 38.462 0.00 0.00 0.00 2.59
5503 5934 7.729431 ACTTATATTTAGGACTGGAGGGAGTAC 59.271 40.741 0.00 0.00 0.00 2.73
5504 5935 4.628661 ATTTAGGACTGGAGGGAGTACT 57.371 45.455 0.00 0.00 40.49 2.73
5515 5946 5.251764 TGGAGGGAGTACTATCGTATTAGC 58.748 45.833 0.00 0.00 0.00 3.09
5516 5947 5.221986 TGGAGGGAGTACTATCGTATTAGCA 60.222 44.000 0.00 0.00 0.00 3.49
5582 6013 5.957796 CCTTGTAGTCTTAAATAAAAGCGCG 59.042 40.000 0.00 0.00 0.00 6.86
5583 6014 6.183360 CCTTGTAGTCTTAAATAAAAGCGCGA 60.183 38.462 12.10 0.00 0.00 5.87
5593 6024 8.708075 TTAAATAAAAGCGCGATGTGATATTC 57.292 30.769 12.10 0.00 0.00 1.75
5594 6025 2.930230 AAAGCGCGATGTGATATTCG 57.070 45.000 12.10 0.00 38.37 3.34
5597 6028 2.201732 AGCGCGATGTGATATTCGTTT 58.798 42.857 12.10 0.00 37.66 3.60
5598 6029 2.033747 AGCGCGATGTGATATTCGTTTG 60.034 45.455 12.10 0.00 37.66 2.93
5600 6031 3.784199 GCGCGATGTGATATTCGTTTGTT 60.784 43.478 12.10 0.00 37.66 2.83
5601 6032 3.714016 CGCGATGTGATATTCGTTTGTTG 59.286 43.478 0.00 0.00 37.66 3.33
5602 6033 3.478516 GCGATGTGATATTCGTTTGTTGC 59.521 43.478 0.00 0.00 37.66 4.17
5604 6035 5.323900 CGATGTGATATTCGTTTGTTGCTT 58.676 37.500 0.00 0.00 0.00 3.91
5606 6037 6.958752 CGATGTGATATTCGTTTGTTGCTTAA 59.041 34.615 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 6.874134 GCTCTTTCAGTGTTATCTTAGAACCA 59.126 38.462 0.00 0.00 0.00 3.67
129 130 5.012046 TCCTCATTGAGCTCTTTCAGTGTTA 59.988 40.000 16.19 0.00 36.52 2.41
208 209 1.234615 CGGTGACCAACATGTCCACC 61.235 60.000 20.59 20.59 35.19 4.61
245 246 2.045926 GGAGTGGCTTGGCGATGT 60.046 61.111 0.00 0.00 0.00 3.06
274 275 7.042725 ACGAATTGTTCCATGTATTATCTGTCG 60.043 37.037 0.00 0.00 0.00 4.35
282 283 5.745227 AGGAGACGAATTGTTCCATGTATT 58.255 37.500 0.00 0.00 33.05 1.89
437 445 2.049248 TTTCACCCGTACGGCGAC 60.049 61.111 29.15 6.66 44.77 5.19
446 454 3.380320 AGGTCTTTTCTTTGTTTCACCCG 59.620 43.478 0.00 0.00 0.00 5.28
455 463 7.928307 TGAATCATCCTAGGTCTTTTCTTTG 57.072 36.000 9.08 0.00 0.00 2.77
463 471 7.016072 CCTTGACTTATGAATCATCCTAGGTCT 59.984 40.741 9.08 0.00 35.34 3.85
472 480 8.260099 TCTCAGATCCTTGACTTATGAATCAT 57.740 34.615 0.00 0.00 0.00 2.45
486 497 4.288398 TCTGCTCATCTTCTCAGATCCTT 58.712 43.478 0.00 0.00 37.71 3.36
497 508 1.677217 GGCCGTTCTTCTGCTCATCTT 60.677 52.381 0.00 0.00 0.00 2.40
535 546 0.250252 TTCATGTGTTCCTCAGCGCA 60.250 50.000 11.47 0.00 0.00 6.09
548 559 0.953960 GGAACCGGCGTTCTTCATGT 60.954 55.000 17.26 0.00 46.46 3.21
575 586 0.620556 GTTCATCCCCTGCCTCTTCA 59.379 55.000 0.00 0.00 0.00 3.02
603 614 2.349590 GCCAAAAATGGATGGTTGAGC 58.650 47.619 0.00 0.00 39.00 4.26
719 732 4.314440 TGCCACACGGTGCCTCTC 62.314 66.667 8.30 0.00 31.34 3.20
790 803 0.252284 ACCTAGGACCCCTCACAGTG 60.252 60.000 17.98 0.00 34.61 3.66
791 804 1.288335 CTACCTAGGACCCCTCACAGT 59.712 57.143 17.98 0.00 34.61 3.55
819 915 9.665719 TCACAATGAGATATTGCTAAACAGTAA 57.334 29.630 0.00 0.00 32.55 2.24
840 936 3.773418 TGGTCTCCGGTTTAATCACAA 57.227 42.857 0.00 0.00 0.00 3.33
858 954 0.730155 TCGTCGATCGAACCGTTTGG 60.730 55.000 21.31 2.23 45.98 3.28
875 971 1.131693 GCCTCCCGGTTTATGTTTTCG 59.868 52.381 0.00 0.00 0.00 3.46
882 978 1.912971 GGTGAGCCTCCCGGTTTAT 59.087 57.895 0.00 0.00 0.00 1.40
888 984 4.452733 GAACCGGTGAGCCTCCCG 62.453 72.222 8.52 12.88 43.82 5.14
910 1006 3.235200 TGGTTTTCAAAATCGGACCCAT 58.765 40.909 0.00 0.00 0.00 4.00
979 1086 1.674908 GCGTTTGCTCTTTTTCTCCG 58.325 50.000 0.00 0.00 38.39 4.63
1400 1535 1.667154 CCGTCTCTTCCCGCAGATCA 61.667 60.000 0.00 0.00 0.00 2.92
1480 1615 6.969043 ACTCAATGTGAATATCCTAACCCAA 58.031 36.000 0.00 0.00 0.00 4.12
1518 1658 3.478226 CGTCACGCATGCACTGAT 58.522 55.556 19.57 0.00 0.00 2.90
1578 1718 3.841255 AGGGGATATAGGCAGCTTAAGTC 59.159 47.826 4.02 0.00 0.00 3.01
1592 1732 3.176924 ACGCATGAGTAGAGGGGATAT 57.823 47.619 0.00 0.00 0.00 1.63
1593 1733 2.677542 ACGCATGAGTAGAGGGGATA 57.322 50.000 0.00 0.00 0.00 2.59
1594 1734 1.794714 AACGCATGAGTAGAGGGGAT 58.205 50.000 1.37 0.00 0.00 3.85
1596 1736 2.693591 TCTTAACGCATGAGTAGAGGGG 59.306 50.000 1.37 0.00 0.00 4.79
1597 1737 4.592485 ATCTTAACGCATGAGTAGAGGG 57.408 45.455 1.37 0.00 0.00 4.30
1650 1801 3.344703 TGGAAATGCCACACTGGAG 57.655 52.632 0.00 0.00 43.33 3.86
1672 1824 6.368213 AGGCGTTTTGAAGTTACGAAAATAG 58.632 36.000 0.18 0.00 37.47 1.73
1689 1841 4.270008 AGCAAGACCATATTAAGGCGTTT 58.730 39.130 0.00 0.00 0.00 3.60
1692 1844 6.560253 AAATAGCAAGACCATATTAAGGCG 57.440 37.500 0.00 0.00 0.00 5.52
1779 1932 6.494666 ACGGAGGGAGTATATCATCAAAAA 57.505 37.500 0.00 0.00 0.00 1.94
1795 1948 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1796 1949 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1815 1968 9.827411 GTAGTCCATTTGAATGTCTAAAAAGAC 57.173 33.333 3.30 0.00 39.15 3.01
1816 1969 9.567776 TGTAGTCCATTTGAATGTCTAAAAAGA 57.432 29.630 3.30 0.00 34.60 2.52
1818 1971 9.959749 GTTGTAGTCCATTTGAATGTCTAAAAA 57.040 29.630 3.30 2.71 34.60 1.94
1819 1972 9.126151 TGTTGTAGTCCATTTGAATGTCTAAAA 57.874 29.630 3.30 4.62 34.60 1.52
1820 1973 8.684386 TGTTGTAGTCCATTTGAATGTCTAAA 57.316 30.769 3.30 0.00 34.60 1.85
1821 1974 8.862325 ATGTTGTAGTCCATTTGAATGTCTAA 57.138 30.769 3.30 0.00 34.60 2.10
1822 1975 9.378551 GTATGTTGTAGTCCATTTGAATGTCTA 57.621 33.333 3.30 3.40 34.60 2.59
1823 1976 7.064609 CGTATGTTGTAGTCCATTTGAATGTCT 59.935 37.037 3.30 4.19 34.60 3.41
1824 1977 7.180079 CGTATGTTGTAGTCCATTTGAATGTC 58.820 38.462 3.30 0.00 34.60 3.06
1825 1978 6.093495 CCGTATGTTGTAGTCCATTTGAATGT 59.907 38.462 3.30 0.00 34.60 2.71
1826 1979 6.315144 TCCGTATGTTGTAGTCCATTTGAATG 59.685 38.462 0.00 0.00 36.17 2.67
1827 1980 6.411376 TCCGTATGTTGTAGTCCATTTGAAT 58.589 36.000 0.00 0.00 0.00 2.57
1828 1981 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
1829 1982 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
1830 1983 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
1831 1984 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
1832 1985 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
1833 1986 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
1834 1987 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
1871 2024 9.907576 CGAAGTAAAATGAGTGAATCTACAATC 57.092 33.333 0.00 0.00 35.78 2.67
1872 2025 9.436957 ACGAAGTAAAATGAGTGAATCTACAAT 57.563 29.630 0.00 0.00 41.94 2.71
1873 2026 8.827177 ACGAAGTAAAATGAGTGAATCTACAA 57.173 30.769 0.00 0.00 41.94 2.41
1890 2043 8.136800 TTCAACAAGTGACTACATACGAAGTAA 58.863 33.333 0.00 0.00 41.03 2.24
1891 2044 7.650890 TTCAACAAGTGACTACATACGAAGTA 58.349 34.615 0.00 0.00 41.66 2.24
1892 2045 6.509656 TTCAACAAGTGACTACATACGAAGT 58.490 36.000 0.00 0.00 39.84 3.01
1893 2046 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
1894 2047 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
1895 2048 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
1896 2049 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1897 2050 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1899 2052 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1900 2053 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1901 2054 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1902 2055 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1903 2056 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1904 2057 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1905 2058 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1906 2059 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1907 2060 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1923 2076 8.893727 CCTCCGTTCATAAATATTTGTCTTTCT 58.106 33.333 11.05 0.00 0.00 2.52
1924 2077 8.129211 CCCTCCGTTCATAAATATTTGTCTTTC 58.871 37.037 11.05 0.00 0.00 2.62
1925 2078 7.832187 TCCCTCCGTTCATAAATATTTGTCTTT 59.168 33.333 11.05 0.00 0.00 2.52
1926 2079 7.343357 TCCCTCCGTTCATAAATATTTGTCTT 58.657 34.615 11.05 0.00 0.00 3.01
1927 2080 6.895782 TCCCTCCGTTCATAAATATTTGTCT 58.104 36.000 11.05 0.00 0.00 3.41
1928 2081 6.766467 ACTCCCTCCGTTCATAAATATTTGTC 59.234 38.462 11.05 0.00 0.00 3.18
1929 2082 6.659824 ACTCCCTCCGTTCATAAATATTTGT 58.340 36.000 11.05 0.84 0.00 2.83
1930 2083 7.931948 ACTACTCCCTCCGTTCATAAATATTTG 59.068 37.037 11.05 0.00 0.00 2.32
1931 2084 8.030913 ACTACTCCCTCCGTTCATAAATATTT 57.969 34.615 5.89 5.89 0.00 1.40
1932 2085 7.613551 ACTACTCCCTCCGTTCATAAATATT 57.386 36.000 0.00 0.00 0.00 1.28
1933 2086 7.727186 TGTACTACTCCCTCCGTTCATAAATAT 59.273 37.037 0.00 0.00 0.00 1.28
1934 2087 7.062322 TGTACTACTCCCTCCGTTCATAAATA 58.938 38.462 0.00 0.00 0.00 1.40
1935 2088 5.895534 TGTACTACTCCCTCCGTTCATAAAT 59.104 40.000 0.00 0.00 0.00 1.40
1936 2089 5.263599 TGTACTACTCCCTCCGTTCATAAA 58.736 41.667 0.00 0.00 0.00 1.40
1937 2090 4.858850 TGTACTACTCCCTCCGTTCATAA 58.141 43.478 0.00 0.00 0.00 1.90
1938 2091 4.508551 TGTACTACTCCCTCCGTTCATA 57.491 45.455 0.00 0.00 0.00 2.15
1939 2092 3.377253 TGTACTACTCCCTCCGTTCAT 57.623 47.619 0.00 0.00 0.00 2.57
1940 2093 2.885135 TGTACTACTCCCTCCGTTCA 57.115 50.000 0.00 0.00 0.00 3.18
1941 2094 3.737355 GCAATGTACTACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
1942 2095 2.167900 GCAATGTACTACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
1943 2096 1.755380 GCAATGTACTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
1944 2097 2.032620 AGCAATGTACTACTCCCTCCG 58.967 52.381 0.00 0.00 0.00 4.63
1945 2098 4.501743 GCTAAGCAATGTACTACTCCCTCC 60.502 50.000 0.00 0.00 0.00 4.30
1946 2099 4.342665 AGCTAAGCAATGTACTACTCCCTC 59.657 45.833 0.00 0.00 0.00 4.30
1947 2100 4.290942 AGCTAAGCAATGTACTACTCCCT 58.709 43.478 0.00 0.00 0.00 4.20
1948 2101 4.342665 AGAGCTAAGCAATGTACTACTCCC 59.657 45.833 0.00 0.00 0.00 4.30
1949 2102 5.523438 AGAGCTAAGCAATGTACTACTCC 57.477 43.478 0.00 0.00 0.00 3.85
1950 2103 9.535878 AAAATAGAGCTAAGCAATGTACTACTC 57.464 33.333 0.00 0.00 0.00 2.59
2052 2205 2.223745 GTGCCGGAGAAACCTAACAAA 58.776 47.619 5.05 0.00 36.31 2.83
2292 2474 2.162319 TATTGTTCACGCACTCTGCA 57.838 45.000 0.00 0.00 45.36 4.41
2294 2476 4.923871 ACTAGTTATTGTTCACGCACTCTG 59.076 41.667 0.00 0.00 0.00 3.35
2412 2594 4.773323 AAAATCAGGCTTTCAGTACAGC 57.227 40.909 0.00 0.00 35.07 4.40
2517 2699 8.285394 CCTTCACAAGGTATGAAATGATTATCG 58.715 37.037 0.00 0.00 43.95 2.92
2693 2880 2.038557 TCTTGGCAACTTCTAGACACCC 59.961 50.000 0.00 0.00 37.61 4.61
3068 3350 7.794041 TGGCAATCCTAAATGCAGAAAATATT 58.206 30.769 0.00 0.00 44.32 1.28
3072 3354 5.221601 TGTTGGCAATCCTAAATGCAGAAAA 60.222 36.000 1.92 0.00 44.32 2.29
3090 3372 0.179081 GACGGAGGGAGTATGTTGGC 60.179 60.000 0.00 0.00 0.00 4.52
3099 3381 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3100 3382 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3101 3383 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3102 3384 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3103 3385 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3104 3386 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3105 3387 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3106 3388 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3107 3389 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3108 3390 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3109 3391 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3117 3399 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3118 3400 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3119 3401 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3120 3402 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3121 3403 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3122 3404 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3162 3444 7.147532 ACCCTAGACCTACCTATGAAACAAATC 60.148 40.741 0.00 0.00 0.00 2.17
3401 3687 7.439108 AGTTATTATACCTGGAAGCTTCACT 57.561 36.000 27.02 14.08 0.00 3.41
3461 3747 9.539825 ACAAATGATTAGTTAAAACATGCAACA 57.460 25.926 0.00 0.00 0.00 3.33
4117 4513 4.654091 ACCAACAGTTGAAAATGGTGAG 57.346 40.909 15.36 3.41 42.57 3.51
4223 4619 1.339631 TGGTTATGTACTGCACTGGCC 60.340 52.381 0.00 0.00 40.13 5.36
4342 4738 4.741342 GCTACAGCTTGCAAAATGATCTT 58.259 39.130 15.44 0.00 38.21 2.40
4383 4779 6.269194 TCCCTCCGTCCCATAATATAAGATT 58.731 40.000 0.00 0.00 0.00 2.40
4393 4789 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4522 4951 6.378848 GTGCCCACCCTTTGTTAATTAAGATA 59.621 38.462 0.00 0.00 0.00 1.98
4721 5150 5.185635 TCCAAAGCTGTCATCCTTTTTATGG 59.814 40.000 0.00 0.00 0.00 2.74
4754 5184 5.513495 GCGATTAGTACTCTTGAAGACAGTG 59.487 44.000 0.00 0.00 0.00 3.66
4757 5187 4.461431 TGGCGATTAGTACTCTTGAAGACA 59.539 41.667 0.00 0.00 0.00 3.41
4848 5278 0.671472 CATTGACTCAGGCGTGCAGA 60.671 55.000 0.35 0.00 0.00 4.26
4852 5282 0.036952 ACTCCATTGACTCAGGCGTG 60.037 55.000 0.00 0.00 0.00 5.34
4905 5335 2.832129 ACTCAAGACCATGGTGATACGT 59.168 45.455 25.52 10.91 0.00 3.57
4993 5423 2.869101 TGTACCAGGCATGCTGTTAA 57.131 45.000 18.92 0.00 0.00 2.01
5034 5464 1.502231 ACTGTCGACTGCATTGTGAC 58.498 50.000 20.88 0.00 0.00 3.67
5041 5471 1.202132 GCAAACAAACTGTCGACTGCA 60.202 47.619 20.88 0.00 0.00 4.41
5045 5475 0.653636 TCGGCAAACAAACTGTCGAC 59.346 50.000 9.11 9.11 45.28 4.20
5047 5477 2.043411 CAATCGGCAAACAAACTGTCG 58.957 47.619 0.00 0.00 43.14 4.35
5145 5576 4.466015 TCTGGCCCATCAATTTCCTAAAAC 59.534 41.667 0.00 0.00 0.00 2.43
5213 5644 1.098050 CATTGGTTACCAGCTGAGCC 58.902 55.000 17.39 8.42 33.81 4.70
5214 5645 1.826385 ACATTGGTTACCAGCTGAGC 58.174 50.000 17.39 5.64 33.81 4.26
5248 5679 4.709250 AGTCCTTCAGTTTGAGGAACTTC 58.291 43.478 0.00 0.00 46.34 3.01
5258 5689 4.772886 ACCACACTTAGTCCTTCAGTTT 57.227 40.909 0.00 0.00 0.00 2.66
5281 5712 5.685511 CCAAAACAACAGAGGAACATAAACG 59.314 40.000 0.00 0.00 0.00 3.60
5282 5713 5.983118 CCCAAAACAACAGAGGAACATAAAC 59.017 40.000 0.00 0.00 0.00 2.01
5316 5747 9.209175 GTAATAGATTGTCAACTTCAGTGTTCT 57.791 33.333 0.00 0.00 0.00 3.01
5329 5760 4.543689 ACGGAGGGAGTAATAGATTGTCA 58.456 43.478 0.00 0.00 0.00 3.58
5344 5775 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
5345 5776 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
5346 5777 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
5347 5778 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
5348 5779 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
5349 5780 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
5350 5781 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
5356 5787 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
5357 5788 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
5358 5789 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
5359 5790 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
5360 5791 9.522804 CATAGTGGAATCTCTACAAAGACTTAC 57.477 37.037 0.00 0.00 29.47 2.34
5361 5792 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
5362 5793 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
5363 5794 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
5364 5795 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
5365 5796 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
5366 5797 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
5367 5798 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
5368 5799 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
5369 5800 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
5370 5801 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
5371 5802 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
5372 5803 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
5373 5804 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
5374 5805 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
5375 5806 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
5376 5807 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
5377 5808 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
5378 5809 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
5379 5810 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
5380 5811 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
5381 5812 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
5382 5813 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
5383 5814 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
5384 5815 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
5385 5816 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
5386 5817 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
5387 5818 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
5388 5819 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
5389 5820 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
5417 5848 9.396022 GGAGGAAAATGAATGAATCTACACTTA 57.604 33.333 0.00 0.00 0.00 2.24
5418 5849 7.066284 CGGAGGAAAATGAATGAATCTACACTT 59.934 37.037 0.00 0.00 0.00 3.16
5419 5850 6.540189 CGGAGGAAAATGAATGAATCTACACT 59.460 38.462 0.00 0.00 0.00 3.55
5420 5851 6.316390 ACGGAGGAAAATGAATGAATCTACAC 59.684 38.462 0.00 0.00 0.00 2.90
5421 5852 6.414732 ACGGAGGAAAATGAATGAATCTACA 58.585 36.000 0.00 0.00 0.00 2.74
5422 5853 6.927294 ACGGAGGAAAATGAATGAATCTAC 57.073 37.500 0.00 0.00 0.00 2.59
5423 5854 8.210946 ACATACGGAGGAAAATGAATGAATCTA 58.789 33.333 0.00 0.00 0.00 1.98
5424 5855 7.056635 ACATACGGAGGAAAATGAATGAATCT 58.943 34.615 0.00 0.00 0.00 2.40
5425 5856 7.264373 ACATACGGAGGAAAATGAATGAATC 57.736 36.000 0.00 0.00 0.00 2.52
5426 5857 7.993183 ACTACATACGGAGGAAAATGAATGAAT 59.007 33.333 0.00 0.00 0.00 2.57
5427 5858 7.335627 ACTACATACGGAGGAAAATGAATGAA 58.664 34.615 0.00 0.00 0.00 2.57
5428 5859 6.884832 ACTACATACGGAGGAAAATGAATGA 58.115 36.000 0.00 0.00 0.00 2.57
5429 5860 6.202954 GGACTACATACGGAGGAAAATGAATG 59.797 42.308 0.00 0.00 0.00 2.67
5430 5861 6.126883 TGGACTACATACGGAGGAAAATGAAT 60.127 38.462 0.00 0.00 0.00 2.57
5431 5862 5.188163 TGGACTACATACGGAGGAAAATGAA 59.812 40.000 0.00 0.00 0.00 2.57
5432 5863 4.712829 TGGACTACATACGGAGGAAAATGA 59.287 41.667 0.00 0.00 0.00 2.57
5433 5864 4.809426 GTGGACTACATACGGAGGAAAATG 59.191 45.833 0.00 0.00 0.00 2.32
5434 5865 4.141779 GGTGGACTACATACGGAGGAAAAT 60.142 45.833 0.00 0.00 0.00 1.82
5435 5866 3.196254 GGTGGACTACATACGGAGGAAAA 59.804 47.826 0.00 0.00 0.00 2.29
5436 5867 2.762327 GGTGGACTACATACGGAGGAAA 59.238 50.000 0.00 0.00 0.00 3.13
5437 5868 2.024655 AGGTGGACTACATACGGAGGAA 60.025 50.000 0.00 0.00 0.00 3.36
5438 5869 1.567649 AGGTGGACTACATACGGAGGA 59.432 52.381 0.00 0.00 0.00 3.71
5439 5870 2.068834 AGGTGGACTACATACGGAGG 57.931 55.000 0.00 0.00 0.00 4.30
5440 5871 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
5441 5872 3.200605 TCACTAGGTGGACTACATACGGA 59.799 47.826 0.00 0.00 33.87 4.69
5442 5873 3.548770 TCACTAGGTGGACTACATACGG 58.451 50.000 0.00 0.00 33.87 4.02
5443 5874 5.571784 TTTCACTAGGTGGACTACATACG 57.428 43.478 0.00 0.00 33.87 3.06
5444 5875 7.285858 AGAGATTTCACTAGGTGGACTACATAC 59.714 40.741 0.00 0.00 33.87 2.39
5445 5876 7.355101 AGAGATTTCACTAGGTGGACTACATA 58.645 38.462 0.00 0.00 33.87 2.29
5446 5877 6.198639 AGAGATTTCACTAGGTGGACTACAT 58.801 40.000 0.00 0.00 33.87 2.29
5447 5878 5.580998 AGAGATTTCACTAGGTGGACTACA 58.419 41.667 0.00 0.00 33.87 2.74
5448 5879 6.602406 TGTAGAGATTTCACTAGGTGGACTAC 59.398 42.308 0.00 0.00 33.87 2.73
5449 5880 6.728411 TGTAGAGATTTCACTAGGTGGACTA 58.272 40.000 0.00 0.00 33.87 2.59
5450 5881 5.580998 TGTAGAGATTTCACTAGGTGGACT 58.419 41.667 0.00 0.00 33.87 3.85
5451 5882 5.916661 TGTAGAGATTTCACTAGGTGGAC 57.083 43.478 0.00 0.00 33.87 4.02
5452 5883 6.724441 TCTTTGTAGAGATTTCACTAGGTGGA 59.276 38.462 0.00 0.00 33.87 4.02
5453 5884 6.814146 GTCTTTGTAGAGATTTCACTAGGTGG 59.186 42.308 0.00 0.00 33.87 4.61
5454 5885 7.607250 AGTCTTTGTAGAGATTTCACTAGGTG 58.393 38.462 0.00 0.00 34.45 4.00
5455 5886 7.784470 AGTCTTTGTAGAGATTTCACTAGGT 57.216 36.000 0.00 0.00 0.00 3.08
5471 5902 8.487028 CCTCCAGTCCTAAATATAAGTCTTTGT 58.513 37.037 0.00 0.00 0.00 2.83
5472 5903 7.934120 CCCTCCAGTCCTAAATATAAGTCTTTG 59.066 40.741 0.00 0.00 0.00 2.77
5473 5904 7.849904 TCCCTCCAGTCCTAAATATAAGTCTTT 59.150 37.037 0.00 0.00 0.00 2.52
5474 5905 7.371043 TCCCTCCAGTCCTAAATATAAGTCTT 58.629 38.462 0.00 0.00 0.00 3.01
5475 5906 6.935036 TCCCTCCAGTCCTAAATATAAGTCT 58.065 40.000 0.00 0.00 0.00 3.24
5476 5907 6.783482 ACTCCCTCCAGTCCTAAATATAAGTC 59.217 42.308 0.00 0.00 0.00 3.01
5477 5908 6.694611 ACTCCCTCCAGTCCTAAATATAAGT 58.305 40.000 0.00 0.00 0.00 2.24
5478 5909 7.951245 AGTACTCCCTCCAGTCCTAAATATAAG 59.049 40.741 0.00 0.00 0.00 1.73
5479 5910 7.834046 AGTACTCCCTCCAGTCCTAAATATAA 58.166 38.462 0.00 0.00 0.00 0.98
5480 5911 7.417811 AGTACTCCCTCCAGTCCTAAATATA 57.582 40.000 0.00 0.00 0.00 0.86
5481 5912 6.296435 AGTACTCCCTCCAGTCCTAAATAT 57.704 41.667 0.00 0.00 0.00 1.28
5482 5913 5.745988 AGTACTCCCTCCAGTCCTAAATA 57.254 43.478 0.00 0.00 0.00 1.40
5483 5914 4.628661 AGTACTCCCTCCAGTCCTAAAT 57.371 45.455 0.00 0.00 0.00 1.40
5484 5915 5.689564 CGATAGTACTCCCTCCAGTCCTAAA 60.690 48.000 0.00 0.00 0.00 1.85
5485 5916 4.202440 CGATAGTACTCCCTCCAGTCCTAA 60.202 50.000 0.00 0.00 0.00 2.69
5486 5917 3.327172 CGATAGTACTCCCTCCAGTCCTA 59.673 52.174 0.00 0.00 0.00 2.94
5487 5918 2.106857 CGATAGTACTCCCTCCAGTCCT 59.893 54.545 0.00 0.00 0.00 3.85
5488 5919 2.506444 CGATAGTACTCCCTCCAGTCC 58.494 57.143 0.00 0.00 0.00 3.85
5557 5988 5.737757 GCGCTTTTATTTAAGACTACAAGGC 59.262 40.000 0.00 0.00 0.00 4.35
5558 5989 5.957796 CGCGCTTTTATTTAAGACTACAAGG 59.042 40.000 5.56 0.00 0.00 3.61
5566 5997 5.788055 TCACATCGCGCTTTTATTTAAGA 57.212 34.783 5.56 0.00 0.00 2.10
5573 6004 3.799963 ACGAATATCACATCGCGCTTTTA 59.200 39.130 5.56 0.00 42.61 1.52
5574 6005 2.607635 ACGAATATCACATCGCGCTTTT 59.392 40.909 5.56 0.00 42.61 2.27
5575 6006 2.201732 ACGAATATCACATCGCGCTTT 58.798 42.857 5.56 0.00 42.61 3.51
5576 6007 1.852942 ACGAATATCACATCGCGCTT 58.147 45.000 5.56 0.00 42.61 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.