Multiple sequence alignment - TraesCS7B01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G202300 chr7B 100.000 7298 0 0 1 7298 371042326 371035029 0.000000e+00 13477.0
1 TraesCS7B01G202300 chr7B 90.769 130 12 0 6828 6957 440194419 440194290 2.710000e-39 174.0
2 TraesCS7B01G202300 chr7B 90.152 132 11 1 6828 6957 744275205 744275336 3.500000e-38 171.0
3 TraesCS7B01G202300 chr7D 96.325 2748 63 12 7 2734 376095510 376092781 0.000000e+00 4481.0
4 TraesCS7B01G202300 chr7D 93.032 1550 62 21 5295 6838 376089353 376087844 0.000000e+00 2222.0
5 TraesCS7B01G202300 chr7D 94.974 1333 49 9 2720 4043 376092754 376091431 0.000000e+00 2074.0
6 TraesCS7B01G202300 chr7D 94.545 880 37 5 4076 4953 376090491 376089621 0.000000e+00 1349.0
7 TraesCS7B01G202300 chr7D 92.542 295 21 1 7005 7298 376087589 376087295 8.750000e-114 422.0
8 TraesCS7B01G202300 chr7D 92.369 249 11 5 4961 5208 376089572 376089331 1.510000e-91 348.0
9 TraesCS7B01G202300 chr7D 98.000 50 1 0 6958 7007 376087855 376087806 3.630000e-13 87.9
10 TraesCS7B01G202300 chr7D 95.556 45 2 0 5256 5300 422858887 422858931 1.020000e-08 73.1
11 TraesCS7B01G202300 chr7A 94.392 2746 116 16 1 2724 422835058 422832329 0.000000e+00 4183.0
12 TraesCS7B01G202300 chr7A 95.232 2202 82 9 2760 4953 422832264 422830078 0.000000e+00 3463.0
13 TraesCS7B01G202300 chr7A 96.561 785 21 3 5295 6078 422829808 422829029 0.000000e+00 1295.0
14 TraesCS7B01G202300 chr7A 89.889 722 33 15 6124 6835 422829029 422828338 0.000000e+00 893.0
15 TraesCS7B01G202300 chr7A 91.165 249 16 4 4961 5208 422830029 422829786 4.220000e-87 333.0
16 TraesCS7B01G202300 chr7A 91.667 48 3 1 5181 5228 202001662 202001616 1.700000e-06 65.8
17 TraesCS7B01G202300 chr7A 97.297 37 1 0 7252 7288 422824411 422824375 6.110000e-06 63.9
18 TraesCS7B01G202300 chr2A 80.027 751 111 26 3164 3885 728077177 728076437 3.020000e-143 520.0
19 TraesCS7B01G202300 chr2A 79.664 595 85 27 4382 4960 728076142 728075568 5.310000e-106 396.0
20 TraesCS7B01G202300 chr2A 75.862 812 151 20 1877 2657 728078581 728077784 8.940000e-99 372.0
21 TraesCS7B01G202300 chr2A 81.203 399 68 6 3473 3868 726763588 726763982 1.530000e-81 315.0
22 TraesCS7B01G202300 chr2A 84.874 238 33 3 2418 2654 726762717 726762952 3.400000e-58 237.0
23 TraesCS7B01G202300 chr2A 80.233 258 42 8 3164 3416 726763243 726763496 1.250000e-42 185.0
24 TraesCS7B01G202300 chr2A 90.226 133 12 1 4060 4191 628670178 628670046 9.730000e-39 172.0
25 TraesCS7B01G202300 chr2B 80.503 636 93 20 3269 3880 719529308 719528680 6.670000e-125 459.0
26 TraesCS7B01G202300 chr2B 78.426 737 124 26 3155 3868 717916274 717916998 1.440000e-121 448.0
27 TraesCS7B01G202300 chr2B 86.463 229 29 2 2426 2654 717915783 717916009 4.370000e-62 250.0
28 TraesCS7B01G202300 chr2B 89.147 129 12 2 4055 4181 260758218 260758090 7.580000e-35 159.0
29 TraesCS7B01G202300 chr2D 82.957 399 58 8 3473 3868 592284237 592284628 1.160000e-92 351.0
30 TraesCS7B01G202300 chr2D 78.599 257 47 7 5335 5588 592285692 592285943 5.860000e-36 163.0
31 TraesCS7B01G202300 chr2D 88.462 130 12 3 4055 4181 206681105 206681234 3.530000e-33 154.0
32 TraesCS7B01G202300 chr2D 87.736 106 9 3 3155 3258 592283828 592283931 3.580000e-23 121.0
33 TraesCS7B01G202300 chr2D 100.000 28 0 0 5227 5254 622619768 622619741 1.300000e-02 52.8
34 TraesCS7B01G202300 chr5D 91.791 134 11 0 6824 6957 312068993 312069126 3.480000e-43 187.0
35 TraesCS7B01G202300 chr5D 89.437 142 12 3 4057 4196 265961978 265961838 7.520000e-40 176.0
36 TraesCS7B01G202300 chr5D 89.130 46 4 1 5182 5227 519454386 519454342 1.000000e-03 56.5
37 TraesCS7B01G202300 chr5D 100.000 28 0 0 5226 5253 277619893 277619920 1.300000e-02 52.8
38 TraesCS7B01G202300 chr4B 91.241 137 12 0 6824 6960 450479773 450479637 3.480000e-43 187.0
39 TraesCS7B01G202300 chr4B 91.304 46 3 1 5182 5227 644572145 644572189 2.200000e-05 62.1
40 TraesCS7B01G202300 chr4B 100.000 28 0 0 5226 5253 581174936 581174909 1.300000e-02 52.8
41 TraesCS7B01G202300 chr3A 88.235 153 16 1 6809 6961 50750175 50750325 1.620000e-41 182.0
42 TraesCS7B01G202300 chr3A 86.861 137 15 2 4056 4191 11940889 11941023 4.560000e-32 150.0
43 TraesCS7B01G202300 chr3A 93.617 47 2 1 5181 5227 581869678 581869633 1.310000e-07 69.4
44 TraesCS7B01G202300 chr6B 90.977 133 12 0 6828 6960 93565861 93565729 5.820000e-41 180.0
45 TraesCS7B01G202300 chr6B 95.918 49 1 1 5180 5228 217931397 217931444 2.180000e-10 78.7
46 TraesCS7B01G202300 chr6B 100.000 28 0 0 5226 5253 547722619 547722646 1.300000e-02 52.8
47 TraesCS7B01G202300 chr6A 89.510 143 13 2 4056 4196 243958432 243958290 5.820000e-41 180.0
48 TraesCS7B01G202300 chr5B 91.339 127 11 0 6829 6955 671708350 671708476 2.710000e-39 174.0
49 TraesCS7B01G202300 chr5B 95.745 47 2 0 5254 5300 22815133 22815087 7.850000e-10 76.8
50 TraesCS7B01G202300 chr5B 100.000 28 0 0 5226 5253 509684844 509684817 1.300000e-02 52.8
51 TraesCS7B01G202300 chr4D 91.339 127 10 1 6836 6962 508745608 508745733 9.730000e-39 172.0
52 TraesCS7B01G202300 chr4D 97.674 43 1 0 5256 5298 3590515 3590473 2.820000e-09 75.0
53 TraesCS7B01G202300 chr4D 100.000 28 0 0 5226 5253 124786922 124786895 1.300000e-02 52.8
54 TraesCS7B01G202300 chr1A 90.625 128 12 0 6828 6955 49298219 49298346 3.500000e-38 171.0
55 TraesCS7B01G202300 chr1A 95.745 47 2 0 5182 5228 562030188 562030234 7.850000e-10 76.8
56 TraesCS7B01G202300 chr1A 100.000 28 0 0 5227 5254 255753657 255753630 1.300000e-02 52.8
57 TraesCS7B01G202300 chr1A 100.000 28 0 0 5227 5254 347323688 347323715 1.300000e-02 52.8
58 TraesCS7B01G202300 chr5A 86.897 145 15 3 4057 4199 452434929 452434787 7.580000e-35 159.0
59 TraesCS7B01G202300 chr5A 96.078 51 2 0 5254 5304 695799998 695800048 4.690000e-12 84.2
60 TraesCS7B01G202300 chr5A 91.667 48 3 1 5181 5228 691035940 691035986 1.700000e-06 65.8
61 TraesCS7B01G202300 chr1D 97.826 46 1 0 5254 5299 487167932 487167887 6.070000e-11 80.5
62 TraesCS7B01G202300 chr1D 92.157 51 2 2 5256 5304 479607770 479607820 3.650000e-08 71.3
63 TraesCS7B01G202300 chrUn 97.727 44 1 0 5254 5297 311695393 311695436 7.850000e-10 76.8
64 TraesCS7B01G202300 chr4A 97.727 44 1 0 5254 5297 714816835 714816878 7.850000e-10 76.8
65 TraesCS7B01G202300 chr3B 92.308 52 2 1 5254 5305 415757822 415757871 1.020000e-08 73.1
66 TraesCS7B01G202300 chr3D 97.059 34 0 1 5224 5256 26150985 26150952 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G202300 chr7B 371035029 371042326 7297 True 13477.000000 13477 100.000000 1 7298 1 chr7B.!!$R1 7297
1 TraesCS7B01G202300 chr7D 376087295 376095510 8215 True 1569.128571 4481 94.541000 7 7298 7 chr7D.!!$R1 7291
2 TraesCS7B01G202300 chr7A 422824375 422835058 10683 True 1705.150000 4183 94.089333 1 7288 6 chr7A.!!$R2 7287
3 TraesCS7B01G202300 chr2A 728075568 728078581 3013 True 429.333333 520 78.517667 1877 4960 3 chr2A.!!$R2 3083
4 TraesCS7B01G202300 chr2A 726762717 726763982 1265 False 245.666667 315 82.103333 2418 3868 3 chr2A.!!$F1 1450
5 TraesCS7B01G202300 chr2B 719528680 719529308 628 True 459.000000 459 80.503000 3269 3880 1 chr2B.!!$R2 611
6 TraesCS7B01G202300 chr2B 717915783 717916998 1215 False 349.000000 448 82.444500 2426 3868 2 chr2B.!!$F1 1442
7 TraesCS7B01G202300 chr2D 592283828 592285943 2115 False 211.666667 351 83.097333 3155 5588 3 chr2D.!!$F2 2433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.032678 ATTATCCTGACGCCGCTCTG 59.967 55.0 0.00 0.00 0.00 3.35 F
914 924 0.323629 TTCCACCCGTTCATCACCTC 59.676 55.0 0.00 0.00 0.00 3.85 F
2028 2047 0.316204 ACAGTGTACCCGTCGAAAGG 59.684 55.0 0.00 0.44 0.00 3.11 F
2406 2448 1.188863 GGCCATGGTGCTTTGAATCT 58.811 50.0 14.67 0.00 0.00 2.40 F
3731 4061 0.813184 AACCATCTTTCTGCATGGCG 59.187 50.0 1.60 0.00 43.16 5.69 F
3958 4288 4.448395 TGTTATTTCTGTTTGCAATGCAGC 59.552 37.5 20.30 6.47 40.61 5.25 F
5598 6980 0.681564 AAGGTTGGTCGTGGTTGCAA 60.682 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2047 1.003718 CTCCCCCGGTGTCAGTTTC 60.004 63.158 0.00 0.0 0.00 2.78 R
2381 2423 0.112218 AAAGCACCATGGCCACTACA 59.888 50.000 8.16 0.0 0.00 2.74 R
3379 3658 0.326264 ATTGGACACTCTGGGACTGC 59.674 55.000 0.00 0.0 0.00 4.40 R
3798 4128 2.158928 TGCCACTGCAATTTGCTTCTTT 60.159 40.909 21.19 0.0 46.66 2.52 R
4694 5969 1.372501 AAGCATGGGAGGTACCAGTT 58.627 50.000 15.94 0.0 45.20 3.16 R
5928 7311 1.739067 CCACCGTCTTCAAATCCTCC 58.261 55.000 0.00 0.0 0.00 4.30 R
6950 8345 0.043940 AGAACCAGATCTCAGGGGCT 59.956 55.000 4.24 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 0.032678 ATTATCCTGACGCCGCTCTG 59.967 55.000 0.00 0.00 0.00 3.35
245 246 1.229951 TCTCTGCTCCCCACCCATT 60.230 57.895 0.00 0.00 0.00 3.16
831 841 1.065854 CCTTGACAGACAGGGGATGAC 60.066 57.143 0.00 0.00 41.31 3.06
914 924 0.323629 TTCCACCCGTTCATCACCTC 59.676 55.000 0.00 0.00 0.00 3.85
929 939 6.542821 TCATCACCTCCAGTTTTCTTACAAT 58.457 36.000 0.00 0.00 0.00 2.71
940 950 7.257722 CAGTTTTCTTACAATGGTGAACTGTT 58.742 34.615 0.00 0.00 38.43 3.16
974 984 5.200483 GGGTTGAATTGGTCTATTCCATCA 58.800 41.667 0.00 0.00 37.33 3.07
1018 1028 6.317140 GGAAGCAATGTCTGTCTTCAATCATA 59.683 38.462 0.00 0.00 38.70 2.15
1023 1033 8.615211 GCAATGTCTGTCTTCAATCATACATTA 58.385 33.333 0.00 0.00 38.41 1.90
1133 1149 9.851686 ATCAGCAAATATCACTTATGTTAGGAA 57.148 29.630 0.00 0.00 0.00 3.36
1152 1168 1.133809 ACCCTAAAGCTGTGGCCTCA 61.134 55.000 3.32 5.63 39.73 3.86
1219 1235 1.734477 CTGAAGCCACAGTCGACCG 60.734 63.158 13.01 4.15 33.73 4.79
1368 1384 0.806868 ATGATGACAAGCCACTTGCG 59.193 50.000 7.23 0.00 44.43 4.85
1383 1399 2.691011 ACTTGCGTTTAGGAAAAAGCCA 59.309 40.909 6.37 0.00 45.84 4.75
1454 1470 5.619132 TCAGAAGATGATCATAAGCCACA 57.381 39.130 8.54 0.00 31.12 4.17
1628 1644 6.013554 AGGGGCTTCTAATAATAGCACAAA 57.986 37.500 0.00 0.00 40.07 2.83
1655 1671 2.030363 CCGTTTTATTGAAGGCTGCACA 60.030 45.455 0.00 0.00 0.00 4.57
1865 1881 2.312390 GTCTAACAACAAGGGGCCAAA 58.688 47.619 4.39 0.00 0.00 3.28
1874 1890 4.991789 ACAAGGGGCCAAACAATAATTT 57.008 36.364 4.39 0.00 0.00 1.82
2028 2047 0.316204 ACAGTGTACCCGTCGAAAGG 59.684 55.000 0.00 0.44 0.00 3.11
2381 2423 8.473358 TTTGGATTCATAGCAATGAGAATGAT 57.527 30.769 0.00 0.00 42.97 2.45
2392 2434 4.719026 ATGAGAATGATGTAGTGGCCAT 57.281 40.909 9.72 0.00 0.00 4.40
2406 2448 1.188863 GGCCATGGTGCTTTGAATCT 58.811 50.000 14.67 0.00 0.00 2.40
2415 2464 7.437267 CCATGGTGCTTTGAATCTGAATAATTC 59.563 37.037 2.57 0.00 34.40 2.17
2664 2713 8.947115 GGTAGATTTTTACTGACTTGTTAGCAT 58.053 33.333 0.00 0.00 0.00 3.79
2677 2726 3.461061 TGTTAGCATAGCTCTGCATGTC 58.539 45.455 24.15 12.46 44.77 3.06
2810 2919 4.697352 GCTTACAGGAGAAGAAAGCATTGA 59.303 41.667 0.00 0.00 41.65 2.57
2894 3003 5.602628 AGAAGGTTCTGTTTCTGTACTGTC 58.397 41.667 0.00 0.00 35.89 3.51
3005 3136 3.589951 AGCAATTGATAGGCTGACCAT 57.410 42.857 10.34 0.00 39.06 3.55
3006 3137 3.220110 AGCAATTGATAGGCTGACCATG 58.780 45.455 10.34 0.00 39.06 3.66
3007 3138 2.288030 GCAATTGATAGGCTGACCATGC 60.288 50.000 10.34 0.00 39.06 4.06
3008 3139 3.220110 CAATTGATAGGCTGACCATGCT 58.780 45.455 0.00 0.00 39.06 3.79
3131 3348 7.066163 TCCTGATTTCTTGTACATGCATAACAG 59.934 37.037 12.34 6.20 0.00 3.16
3332 3611 5.008613 CGTTTCAGATGGGAAAACTGAAGAA 59.991 40.000 0.00 0.00 46.39 2.52
3379 3658 4.806640 ATAAACATTGGGAAAGGCACTG 57.193 40.909 0.00 0.00 40.86 3.66
3416 3695 3.069729 CCAATAGAGGGAGAAAGGTACCG 59.930 52.174 6.18 0.00 0.00 4.02
3417 3696 1.772836 TAGAGGGAGAAAGGTACCGC 58.227 55.000 6.18 0.00 0.00 5.68
3426 3706 5.126545 GGGAGAAAGGTACCGCAATTTTTAT 59.873 40.000 6.18 0.00 0.00 1.40
3462 3780 8.409358 AAATTATATGTATTTGTGGAGGAGCC 57.591 34.615 0.00 0.00 37.10 4.70
3731 4061 0.813184 AACCATCTTTCTGCATGGCG 59.187 50.000 1.60 0.00 43.16 5.69
3798 4128 5.356190 GGATTTCAAGAGCAATGATGTCTCA 59.644 40.000 0.00 0.00 34.30 3.27
3933 4263 7.744733 ACTCAATTTTATTTGGAATGGTTGGT 58.255 30.769 0.00 0.00 0.00 3.67
3948 4278 8.311109 GGAATGGTTGGTATGTTATTTCTGTTT 58.689 33.333 0.00 0.00 0.00 2.83
3958 4288 4.448395 TGTTATTTCTGTTTGCAATGCAGC 59.552 37.500 20.30 6.47 40.61 5.25
4049 5125 9.191995 GTTAATGCACAACTATACTTGCTTTTT 57.808 29.630 5.90 0.00 34.98 1.94
4064 5140 4.993028 TGCTTTTTATGTGGTACTCCCTT 58.007 39.130 0.00 0.00 0.00 3.95
4151 5389 7.642586 GTGTGTTTGTTCACTTATTTACTCCAC 59.357 37.037 0.00 0.00 38.90 4.02
4171 5409 7.774625 ACTCCACATTGAAATTTCCAAAACATT 59.225 29.630 15.48 0.00 0.00 2.71
4213 5451 7.737869 AGGGAATATATCTCATCAGCATCATC 58.262 38.462 0.00 0.00 0.00 2.92
4265 5503 9.640952 TTCCCCTCAAACTATAAAGGATTAATG 57.359 33.333 0.00 0.00 0.00 1.90
4427 5689 9.750882 CACATATATTTCATGCTACTTGATTCG 57.249 33.333 0.00 0.00 0.00 3.34
4604 5879 6.969366 TGTTAATCTGATGTTTGGTGACTTG 58.031 36.000 0.00 0.00 0.00 3.16
4694 5969 2.613595 CAATGCGATTGAGGAATTCCGA 59.386 45.455 18.82 9.53 42.83 4.55
4739 6025 0.747283 CATCTGTCCCTCTTGCTGCC 60.747 60.000 0.00 0.00 0.00 4.85
4776 6101 5.192927 TCACATGTGTTCCTCTTGTCTTTT 58.807 37.500 24.63 0.00 0.00 2.27
4777 6102 5.652014 TCACATGTGTTCCTCTTGTCTTTTT 59.348 36.000 24.63 0.00 0.00 1.94
4778 6103 6.826231 TCACATGTGTTCCTCTTGTCTTTTTA 59.174 34.615 24.63 0.00 0.00 1.52
5090 6472 6.398918 AGTCTATCAATGTAACAGTCACCAC 58.601 40.000 0.00 0.00 0.00 4.16
5110 6492 3.124806 CACTGTATCTTCAGTTGCTGCAG 59.875 47.826 10.11 10.11 44.92 4.41
5149 6531 5.682943 TCTTATTCCCAAAAGAACGTGTG 57.317 39.130 0.00 0.00 0.00 3.82
5174 6556 8.194104 TGGCATTACCATGTTTAATGTGATTAC 58.806 33.333 18.59 7.15 46.36 1.89
5190 6572 8.677148 ATGTGATTACCATGTTATGTACTTCC 57.323 34.615 0.00 0.00 0.00 3.46
5191 6573 7.857456 TGTGATTACCATGTTATGTACTTCCT 58.143 34.615 0.00 0.00 0.00 3.36
5192 6574 7.985184 TGTGATTACCATGTTATGTACTTCCTC 59.015 37.037 0.00 0.00 0.00 3.71
5193 6575 8.204836 GTGATTACCATGTTATGTACTTCCTCT 58.795 37.037 0.00 0.00 0.00 3.69
5194 6576 8.204160 TGATTACCATGTTATGTACTTCCTCTG 58.796 37.037 0.00 0.00 0.00 3.35
5195 6577 7.490657 TTACCATGTTATGTACTTCCTCTGT 57.509 36.000 0.00 0.00 0.00 3.41
5196 6578 6.374417 ACCATGTTATGTACTTCCTCTGTT 57.626 37.500 0.00 0.00 0.00 3.16
5197 6579 6.407202 ACCATGTTATGTACTTCCTCTGTTC 58.593 40.000 0.00 0.00 0.00 3.18
5198 6580 5.817816 CCATGTTATGTACTTCCTCTGTTCC 59.182 44.000 0.00 0.00 0.00 3.62
5199 6581 6.352222 CCATGTTATGTACTTCCTCTGTTCCT 60.352 42.308 0.00 0.00 0.00 3.36
5200 6582 7.147724 CCATGTTATGTACTTCCTCTGTTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
5201 6583 7.786046 TGTTATGTACTTCCTCTGTTCCTAA 57.214 36.000 0.00 0.00 0.00 2.69
5202 6584 8.197592 TGTTATGTACTTCCTCTGTTCCTAAA 57.802 34.615 0.00 0.00 0.00 1.85
5203 6585 8.822805 TGTTATGTACTTCCTCTGTTCCTAAAT 58.177 33.333 0.00 0.00 0.00 1.40
5248 6630 9.595823 TTTCAAGACTTATATTTAGGAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
5249 6631 7.723324 TCAAGACTTATATTTAGGAACGGAGG 58.277 38.462 0.00 0.00 0.00 4.30
5250 6632 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5251 6633 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5252 6634 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5253 6635 6.379579 ACTTATATTTAGGAACGGAGGGAGA 58.620 40.000 0.00 0.00 0.00 3.71
5254 6636 7.017531 ACTTATATTTAGGAACGGAGGGAGAT 58.982 38.462 0.00 0.00 0.00 2.75
5255 6637 7.513091 ACTTATATTTAGGAACGGAGGGAGATT 59.487 37.037 0.00 0.00 0.00 2.40
5256 6638 3.906720 TTTAGGAACGGAGGGAGATTG 57.093 47.619 0.00 0.00 0.00 2.67
5257 6639 2.840640 TAGGAACGGAGGGAGATTGA 57.159 50.000 0.00 0.00 0.00 2.57
5258 6640 1.952621 AGGAACGGAGGGAGATTGAA 58.047 50.000 0.00 0.00 0.00 2.69
5259 6641 2.266279 AGGAACGGAGGGAGATTGAAA 58.734 47.619 0.00 0.00 0.00 2.69
5260 6642 2.846827 AGGAACGGAGGGAGATTGAAAT 59.153 45.455 0.00 0.00 0.00 2.17
5261 6643 3.118223 AGGAACGGAGGGAGATTGAAATC 60.118 47.826 0.00 0.00 35.64 2.17
5572 6954 7.810658 TGACTAAGCTGAATGAAAAGATTGAC 58.189 34.615 0.00 0.00 0.00 3.18
5598 6980 0.681564 AAGGTTGGTCGTGGTTGCAA 60.682 50.000 0.00 0.00 0.00 4.08
5683 7065 1.561542 TCTTTTCTCCAGGCCCAGATC 59.438 52.381 0.00 0.00 0.00 2.75
5928 7311 5.521906 TGGAGATGGATAAGAAGACGAAG 57.478 43.478 0.00 0.00 0.00 3.79
5946 7329 2.770164 AGGAGGATTTGAAGACGGTG 57.230 50.000 0.00 0.00 0.00 4.94
6119 7502 9.453572 TTCTTTGTTAGCTTCAGTGATCATATT 57.546 29.630 0.00 0.00 0.00 1.28
6122 7505 9.665719 TTTGTTAGCTTCAGTGATCATATTACA 57.334 29.630 0.00 0.00 0.00 2.41
6133 7516 8.363390 CAGTGATCATATTACATGTCTACACCT 58.637 37.037 0.00 0.00 0.00 4.00
6159 7544 7.653767 ATTATAGCATTTAGTAGTTCGTGCC 57.346 36.000 0.00 0.00 33.29 5.01
6161 7546 2.027561 AGCATTTAGTAGTTCGTGCCCA 60.028 45.455 0.00 0.00 33.29 5.36
6162 7547 2.351726 GCATTTAGTAGTTCGTGCCCAG 59.648 50.000 0.00 0.00 0.00 4.45
6168 7553 1.185618 TAGTTCGTGCCCAGCTCTGT 61.186 55.000 0.00 0.00 0.00 3.41
6170 7555 0.320421 GTTCGTGCCCAGCTCTGTTA 60.320 55.000 0.00 0.00 0.00 2.41
6174 7559 1.443802 GTGCCCAGCTCTGTTACTTC 58.556 55.000 0.00 0.00 0.00 3.01
6213 7598 2.524569 TTTTACTTGCTTGGCTTGGC 57.475 45.000 0.00 0.00 0.00 4.52
6273 7658 2.555732 AGTTTGGATGGGCAATGGAT 57.444 45.000 0.00 0.00 0.00 3.41
6449 7835 0.401738 CTGGAAGAAGGAAGCACCCA 59.598 55.000 0.00 0.00 35.76 4.51
6468 7854 2.941720 CCAGCATTCTCTTTGTAGGCTC 59.058 50.000 0.00 0.00 0.00 4.70
6536 7922 4.500716 CCCAATTGCCTAAAGTCGTGTTTT 60.501 41.667 0.00 0.00 0.00 2.43
6537 7923 4.444056 CCAATTGCCTAAAGTCGTGTTTTG 59.556 41.667 0.00 0.00 0.00 2.44
6538 7924 2.766970 TGCCTAAAGTCGTGTTTTGC 57.233 45.000 0.00 0.00 0.00 3.68
6539 7925 2.017782 TGCCTAAAGTCGTGTTTTGCA 58.982 42.857 0.00 0.00 0.00 4.08
6542 7928 4.048504 GCCTAAAGTCGTGTTTTGCATTT 58.951 39.130 0.00 0.00 0.00 2.32
6543 7929 4.148174 GCCTAAAGTCGTGTTTTGCATTTC 59.852 41.667 0.00 0.00 0.00 2.17
6544 7930 5.277825 CCTAAAGTCGTGTTTTGCATTTCA 58.722 37.500 0.00 0.00 0.00 2.69
6545 7931 5.920273 CCTAAAGTCGTGTTTTGCATTTCAT 59.080 36.000 0.00 0.00 0.00 2.57
6546 7932 6.420604 CCTAAAGTCGTGTTTTGCATTTCATT 59.579 34.615 0.00 0.00 0.00 2.57
6547 7933 6.660887 AAAGTCGTGTTTTGCATTTCATTT 57.339 29.167 0.00 0.00 0.00 2.32
6548 7934 5.640218 AGTCGTGTTTTGCATTTCATTTG 57.360 34.783 0.00 0.00 0.00 2.32
6549 7935 4.507388 AGTCGTGTTTTGCATTTCATTTGG 59.493 37.500 0.00 0.00 0.00 3.28
6551 7937 3.606615 CGTGTTTTGCATTTCATTTGGGC 60.607 43.478 0.00 0.00 0.00 5.36
6552 7938 3.565063 GTGTTTTGCATTTCATTTGGGCT 59.435 39.130 0.00 0.00 0.00 5.19
6553 7939 3.564644 TGTTTTGCATTTCATTTGGGCTG 59.435 39.130 0.00 0.00 0.00 4.85
6554 7940 3.766068 TTTGCATTTCATTTGGGCTGA 57.234 38.095 0.00 0.00 0.00 4.26
6555 7941 2.747396 TGCATTTCATTTGGGCTGAC 57.253 45.000 0.00 0.00 0.00 3.51
6556 7942 1.067706 TGCATTTCATTTGGGCTGACG 60.068 47.619 0.00 0.00 0.00 4.35
6557 7943 1.736696 GCATTTCATTTGGGCTGACGG 60.737 52.381 0.00 0.00 0.00 4.79
6600 7986 6.486657 ACTGATGGACATTCATTTTATACCGG 59.513 38.462 0.00 0.00 0.00 5.28
6608 7994 8.924511 ACATTCATTTTATACCGGATCAATCT 57.075 30.769 9.46 0.00 0.00 2.40
6647 8033 3.686726 GTCAGAGTGATGGTTGTGGATTC 59.313 47.826 0.00 0.00 0.00 2.52
6654 8040 3.885901 TGATGGTTGTGGATTCGTTTGAA 59.114 39.130 0.00 0.00 38.76 2.69
6690 8076 3.443329 TGTGTTGTTTGATGCAGTTGAGT 59.557 39.130 0.00 0.00 0.00 3.41
6721 8107 4.275936 GTGTGATGCTGAGGTGTAAGTTTT 59.724 41.667 0.00 0.00 0.00 2.43
6750 8136 6.455380 CGAAAAGTGTTTGTTCGTGGTAACTA 60.455 38.462 0.00 0.00 39.36 2.24
6790 8177 2.431687 TGGGGGTATATGCTCCATGA 57.568 50.000 12.25 0.00 0.00 3.07
6825 8220 1.029408 TGTGCGGTTTTGCTGACACT 61.029 50.000 0.00 0.00 34.14 3.55
6830 8225 0.312102 GGTTTTGCTGACACTGAGGC 59.688 55.000 0.00 0.00 0.00 4.70
6831 8226 1.312815 GTTTTGCTGACACTGAGGCT 58.687 50.000 0.00 0.00 0.00 4.58
6832 8227 1.265365 GTTTTGCTGACACTGAGGCTC 59.735 52.381 7.79 7.79 0.00 4.70
6833 8228 0.761187 TTTGCTGACACTGAGGCTCT 59.239 50.000 16.72 0.00 0.00 4.09
6834 8229 0.034476 TTGCTGACACTGAGGCTCTG 59.966 55.000 18.54 18.54 0.00 3.35
6835 8230 1.117749 TGCTGACACTGAGGCTCTGT 61.118 55.000 19.87 19.87 0.00 3.41
6836 8231 0.034616 GCTGACACTGAGGCTCTGTT 59.965 55.000 22.52 14.52 0.00 3.16
6837 8232 1.938926 GCTGACACTGAGGCTCTGTTC 60.939 57.143 22.52 20.77 0.00 3.18
6838 8233 0.315251 TGACACTGAGGCTCTGTTCG 59.685 55.000 22.52 15.37 0.00 3.95
6839 8234 0.389166 GACACTGAGGCTCTGTTCGG 60.389 60.000 22.52 14.73 0.00 4.30
6840 8235 1.115930 ACACTGAGGCTCTGTTCGGT 61.116 55.000 22.52 15.32 33.29 4.69
6841 8236 0.888619 CACTGAGGCTCTGTTCGGTA 59.111 55.000 22.52 0.00 31.89 4.02
6842 8237 1.272490 CACTGAGGCTCTGTTCGGTAA 59.728 52.381 22.52 0.00 31.89 2.85
6843 8238 2.093973 CACTGAGGCTCTGTTCGGTAAT 60.094 50.000 22.52 0.00 31.89 1.89
6844 8239 2.093973 ACTGAGGCTCTGTTCGGTAATG 60.094 50.000 19.87 0.00 31.36 1.90
6845 8240 1.207089 TGAGGCTCTGTTCGGTAATGG 59.793 52.381 16.72 0.00 0.00 3.16
6846 8241 1.207329 GAGGCTCTGTTCGGTAATGGT 59.793 52.381 7.40 0.00 0.00 3.55
6847 8242 1.207329 AGGCTCTGTTCGGTAATGGTC 59.793 52.381 0.00 0.00 0.00 4.02
6848 8243 1.653151 GCTCTGTTCGGTAATGGTCC 58.347 55.000 0.00 0.00 0.00 4.46
6850 8245 0.108520 TCTGTTCGGTAATGGTCCGC 60.109 55.000 0.00 0.00 46.49 5.54
6851 8246 0.108329 CTGTTCGGTAATGGTCCGCT 60.108 55.000 0.00 0.00 46.49 5.52
6852 8247 0.108520 TGTTCGGTAATGGTCCGCTC 60.109 55.000 0.00 0.00 46.49 5.03
6853 8248 0.175073 GTTCGGTAATGGTCCGCTCT 59.825 55.000 0.00 0.00 46.49 4.09
6854 8249 0.174845 TTCGGTAATGGTCCGCTCTG 59.825 55.000 0.00 0.00 46.49 3.35
6855 8250 1.227263 CGGTAATGGTCCGCTCTGG 60.227 63.158 0.00 0.00 41.48 3.86
6856 8251 1.146263 GGTAATGGTCCGCTCTGGG 59.854 63.158 0.00 0.00 38.76 4.45
6857 8252 1.335132 GGTAATGGTCCGCTCTGGGA 61.335 60.000 0.00 0.00 38.76 4.37
6858 8253 0.539986 GTAATGGTCCGCTCTGGGAA 59.460 55.000 0.00 0.00 37.96 3.97
6859 8254 1.141053 GTAATGGTCCGCTCTGGGAAT 59.859 52.381 0.00 0.00 37.96 3.01
6860 8255 0.181350 AATGGTCCGCTCTGGGAATC 59.819 55.000 0.00 0.00 37.96 2.52
6861 8256 0.692419 ATGGTCCGCTCTGGGAATCT 60.692 55.000 0.00 0.00 37.96 2.40
6862 8257 1.144936 GGTCCGCTCTGGGAATCTG 59.855 63.158 0.00 0.00 37.96 2.90
6863 8258 1.617947 GGTCCGCTCTGGGAATCTGT 61.618 60.000 0.00 0.00 37.96 3.41
6864 8259 0.460987 GTCCGCTCTGGGAATCTGTG 60.461 60.000 0.00 0.00 37.96 3.66
6865 8260 1.153289 CCGCTCTGGGAATCTGTGG 60.153 63.158 0.00 0.00 0.00 4.17
6866 8261 1.617018 CCGCTCTGGGAATCTGTGGA 61.617 60.000 0.00 0.00 0.00 4.02
6867 8262 0.179089 CGCTCTGGGAATCTGTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
6868 8263 1.198713 GCTCTGGGAATCTGTGGAGA 58.801 55.000 0.00 0.00 0.00 3.71
6869 8264 1.138661 GCTCTGGGAATCTGTGGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
6870 8265 1.761784 CTCTGGGAATCTGTGGAGAGG 59.238 57.143 0.00 0.00 0.00 3.69
6871 8266 1.362584 TCTGGGAATCTGTGGAGAGGA 59.637 52.381 0.00 0.00 0.00 3.71
6872 8267 2.022625 TCTGGGAATCTGTGGAGAGGAT 60.023 50.000 0.00 0.00 0.00 3.24
6873 8268 3.207549 TCTGGGAATCTGTGGAGAGGATA 59.792 47.826 0.00 0.00 0.00 2.59
6874 8269 3.969976 CTGGGAATCTGTGGAGAGGATAA 59.030 47.826 0.00 0.00 0.00 1.75
6875 8270 4.370776 TGGGAATCTGTGGAGAGGATAAA 58.629 43.478 0.00 0.00 0.00 1.40
6876 8271 4.977739 TGGGAATCTGTGGAGAGGATAAAT 59.022 41.667 0.00 0.00 0.00 1.40
6877 8272 5.163163 TGGGAATCTGTGGAGAGGATAAATG 60.163 44.000 0.00 0.00 0.00 2.32
6878 8273 5.312079 GGAATCTGTGGAGAGGATAAATGG 58.688 45.833 0.00 0.00 0.00 3.16
6879 8274 3.845781 TCTGTGGAGAGGATAAATGGC 57.154 47.619 0.00 0.00 0.00 4.40
6880 8275 3.114606 TCTGTGGAGAGGATAAATGGCA 58.885 45.455 0.00 0.00 0.00 4.92
6881 8276 3.523157 TCTGTGGAGAGGATAAATGGCAA 59.477 43.478 0.00 0.00 0.00 4.52
6882 8277 3.620488 TGTGGAGAGGATAAATGGCAAC 58.380 45.455 0.00 0.00 0.00 4.17
6883 8278 3.266772 TGTGGAGAGGATAAATGGCAACT 59.733 43.478 0.00 0.00 37.61 3.16
6884 8279 3.879892 GTGGAGAGGATAAATGGCAACTC 59.120 47.826 0.00 0.00 37.61 3.01
6885 8280 3.117888 TGGAGAGGATAAATGGCAACTCC 60.118 47.826 0.00 0.00 41.77 3.85
6895 8290 2.079170 TGGCAACTCCACCATTTTGA 57.921 45.000 0.00 0.00 40.72 2.69
6896 8291 1.686052 TGGCAACTCCACCATTTTGAC 59.314 47.619 0.00 0.00 40.72 3.18
6897 8292 1.000843 GGCAACTCCACCATTTTGACC 59.999 52.381 0.00 0.00 34.01 4.02
6898 8293 1.963515 GCAACTCCACCATTTTGACCT 59.036 47.619 0.00 0.00 0.00 3.85
6899 8294 3.153919 GCAACTCCACCATTTTGACCTA 58.846 45.455 0.00 0.00 0.00 3.08
6900 8295 3.057526 GCAACTCCACCATTTTGACCTAC 60.058 47.826 0.00 0.00 0.00 3.18
6901 8296 4.141287 CAACTCCACCATTTTGACCTACA 58.859 43.478 0.00 0.00 0.00 2.74
6902 8297 4.021102 ACTCCACCATTTTGACCTACAG 57.979 45.455 0.00 0.00 0.00 2.74
6903 8298 2.749621 CTCCACCATTTTGACCTACAGC 59.250 50.000 0.00 0.00 0.00 4.40
6904 8299 2.375174 TCCACCATTTTGACCTACAGCT 59.625 45.455 0.00 0.00 0.00 4.24
6905 8300 2.749621 CCACCATTTTGACCTACAGCTC 59.250 50.000 0.00 0.00 0.00 4.09
6906 8301 2.749621 CACCATTTTGACCTACAGCTCC 59.250 50.000 0.00 0.00 0.00 4.70
6907 8302 2.009774 CCATTTTGACCTACAGCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
6908 8303 1.398390 CATTTTGACCTACAGCTCCGC 59.602 52.381 0.00 0.00 0.00 5.54
6909 8304 0.321298 TTTTGACCTACAGCTCCGCC 60.321 55.000 0.00 0.00 0.00 6.13
6910 8305 1.192146 TTTGACCTACAGCTCCGCCT 61.192 55.000 0.00 0.00 0.00 5.52
6911 8306 0.323999 TTGACCTACAGCTCCGCCTA 60.324 55.000 0.00 0.00 0.00 3.93
6912 8307 1.035932 TGACCTACAGCTCCGCCTAC 61.036 60.000 0.00 0.00 0.00 3.18
6913 8308 0.752376 GACCTACAGCTCCGCCTACT 60.752 60.000 0.00 0.00 0.00 2.57
6914 8309 0.752376 ACCTACAGCTCCGCCTACTC 60.752 60.000 0.00 0.00 0.00 2.59
6915 8310 1.457009 CCTACAGCTCCGCCTACTCC 61.457 65.000 0.00 0.00 0.00 3.85
6916 8311 1.787057 CTACAGCTCCGCCTACTCCG 61.787 65.000 0.00 0.00 0.00 4.63
6917 8312 4.577246 CAGCTCCGCCTACTCCGC 62.577 72.222 0.00 0.00 0.00 5.54
6918 8313 4.824515 AGCTCCGCCTACTCCGCT 62.825 66.667 0.00 0.00 0.00 5.52
6919 8314 4.273257 GCTCCGCCTACTCCGCTC 62.273 72.222 0.00 0.00 0.00 5.03
6920 8315 2.517402 CTCCGCCTACTCCGCTCT 60.517 66.667 0.00 0.00 0.00 4.09
6921 8316 2.829003 TCCGCCTACTCCGCTCTG 60.829 66.667 0.00 0.00 0.00 3.35
6922 8317 3.905678 CCGCCTACTCCGCTCTGG 61.906 72.222 0.00 0.00 40.09 3.86
6923 8318 3.905678 CGCCTACTCCGCTCTGGG 61.906 72.222 0.00 0.00 38.76 4.45
6924 8319 2.442272 GCCTACTCCGCTCTGGGA 60.442 66.667 0.00 0.00 38.76 4.37
6934 8329 2.583520 CTCTGGGAGCTGTGGAGC 59.416 66.667 0.00 0.00 46.64 4.70
6942 8337 2.433318 GCTGTGGAGCGGAGTGAC 60.433 66.667 0.00 0.00 34.87 3.67
6943 8338 2.126307 CTGTGGAGCGGAGTGACG 60.126 66.667 0.00 0.00 0.00 4.35
6952 8347 3.112709 GGAGTGACGCCGAACAGC 61.113 66.667 0.00 0.00 0.00 4.40
6953 8348 3.112709 GAGTGACGCCGAACAGCC 61.113 66.667 0.00 0.00 0.00 4.85
6954 8349 4.681978 AGTGACGCCGAACAGCCC 62.682 66.667 0.00 0.00 0.00 5.19
7000 8395 3.304458 GGTCGATTTGCCTCTTTCGTTTT 60.304 43.478 0.00 0.00 33.52 2.43
7003 8617 3.664025 CGATTTGCCTCTTTCGTTTTGTC 59.336 43.478 0.00 0.00 0.00 3.18
7028 10658 9.613428 TCCTATAATAGAGTGGTGTGATTTTTG 57.387 33.333 0.00 0.00 0.00 2.44
7029 10659 9.396022 CCTATAATAGAGTGGTGTGATTTTTGT 57.604 33.333 0.00 0.00 0.00 2.83
7032 10662 4.045636 AGAGTGGTGTGATTTTTGTTGC 57.954 40.909 0.00 0.00 0.00 4.17
7067 10697 3.007182 CGGGTTGTACAAGGGAGTCTAAA 59.993 47.826 8.98 0.00 0.00 1.85
7142 10772 1.071471 CACAGTGGGAGTGGTGACC 59.929 63.158 0.00 0.00 33.16 4.02
7145 10775 3.239253 GTGGGAGTGGTGACCGGT 61.239 66.667 6.92 6.92 0.00 5.28
7194 10824 5.115480 TGGGCAAAAAGAATTCACTTGTTC 58.885 37.500 8.44 5.47 0.00 3.18
7218 10848 2.333688 TTGTTTGGTCGGTGATGTGA 57.666 45.000 0.00 0.00 0.00 3.58
7225 10855 2.038426 TGGTCGGTGATGTGACATCTTT 59.962 45.455 24.31 0.00 36.83 2.52
7246 10877 4.909696 TGGTTGTGTGTTACAGATTTGG 57.090 40.909 0.00 0.00 41.10 3.28
7289 12325 3.934457 AAATTGGTGATCGTTGTTCCC 57.066 42.857 0.00 0.00 0.00 3.97
7294 12330 1.069935 TGATCGTTGTTCCCGTGCA 59.930 52.632 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 3.152400 ACATACGGCGGGGAGGAC 61.152 66.667 13.24 0.00 0.00 3.85
194 195 2.662866 CGGGAGGATACACTAGACCAA 58.337 52.381 0.00 0.00 41.41 3.67
245 246 0.967887 CTCCCTCTCACGCCAGAGAA 60.968 60.000 11.89 0.95 43.58 2.87
727 737 2.935955 GACGCAACAAGACACCGG 59.064 61.111 0.00 0.00 0.00 5.28
854 864 1.134670 ACGGCATCTGAGAGCTAAACC 60.135 52.381 0.00 0.00 0.00 3.27
855 865 1.929836 CACGGCATCTGAGAGCTAAAC 59.070 52.381 0.00 0.00 0.00 2.01
914 924 6.183360 ACAGTTCACCATTGTAAGAAAACTGG 60.183 38.462 14.27 0.00 44.01 4.00
929 939 1.064758 ACCTGCAAGAACAGTTCACCA 60.065 47.619 15.85 7.97 35.83 4.17
940 950 0.482446 ATTCAACCCCACCTGCAAGA 59.518 50.000 0.00 0.00 34.07 3.02
1018 1028 5.398416 CGTCATCGTCGTTGTCATATAATGT 59.602 40.000 3.38 0.00 0.00 2.71
1023 1033 3.685836 TCGTCATCGTCGTTGTCATAT 57.314 42.857 3.38 0.00 38.33 1.78
1133 1149 1.133809 TGAGGCCACAGCTTTAGGGT 61.134 55.000 5.01 0.00 39.73 4.34
1152 1168 3.967467 ATCCCATTCCTCTGCTGATTT 57.033 42.857 0.00 0.00 0.00 2.17
1202 1218 2.338620 CGGTCGACTGTGGCTTCA 59.661 61.111 16.54 0.00 0.00 3.02
1219 1235 3.569200 AAGGCCGAGGGTTTGAGCC 62.569 63.158 0.00 0.00 44.20 4.70
1324 1340 5.240891 TGAATCATCTGACTTGTCACCTTC 58.759 41.667 0.00 0.88 0.00 3.46
1368 1384 3.562557 TCGTGTCTGGCTTTTTCCTAAAC 59.437 43.478 0.00 0.00 0.00 2.01
1383 1399 6.477688 TGTCGACTTTCTTTAATTTCGTGTCT 59.522 34.615 17.92 0.00 0.00 3.41
1454 1470 8.523915 TTTTGCTGAGTTGATATTCATACCAT 57.476 30.769 0.00 0.00 0.00 3.55
1628 1644 4.097892 CAGCCTTCAATAAAACGGGCTTAT 59.902 41.667 0.00 0.00 46.36 1.73
1672 1688 6.771749 GGTTTCTCATCCTCTGAATCATCATT 59.228 38.462 0.00 0.00 34.37 2.57
1865 1881 3.016736 CGGGGAGCACTCAAATTATTGT 58.983 45.455 0.00 0.00 37.79 2.71
1874 1890 1.198094 TGAATTCCGGGGAGCACTCA 61.198 55.000 0.00 0.00 0.00 3.41
2028 2047 1.003718 CTCCCCCGGTGTCAGTTTC 60.004 63.158 0.00 0.00 0.00 2.78
2256 2287 1.516892 CATTTTGACGCCATGGGGG 59.483 57.895 30.26 14.07 41.67 5.40
2381 2423 0.112218 AAAGCACCATGGCCACTACA 59.888 50.000 8.16 0.00 0.00 2.74
2392 2434 6.150976 ACGAATTATTCAGATTCAAAGCACCA 59.849 34.615 5.76 0.00 34.02 4.17
2406 2448 8.956426 AGAATTAGCAAAGGAACGAATTATTCA 58.044 29.630 5.76 0.00 0.00 2.57
2415 2464 4.452455 ACACAGAGAATTAGCAAAGGAACG 59.548 41.667 0.00 0.00 0.00 3.95
2664 2713 2.988010 AATTCCGACATGCAGAGCTA 57.012 45.000 0.00 0.00 0.00 3.32
2810 2919 7.062957 TCCTCTTGTTTCAATTTCTCTTCCTT 58.937 34.615 0.00 0.00 0.00 3.36
2894 3003 6.076981 AGGCAACAAGTGAGTAAGAAAATG 57.923 37.500 0.00 0.00 41.41 2.32
2975 3106 4.820716 GCCTATCAATTGCTGACTGAGAAT 59.179 41.667 0.00 0.00 36.69 2.40
3079 3210 4.467795 AGGAAGAGCAGTGCAAGATAAGTA 59.532 41.667 19.20 0.00 0.00 2.24
3080 3211 3.262915 AGGAAGAGCAGTGCAAGATAAGT 59.737 43.478 19.20 0.00 0.00 2.24
3357 3636 4.159506 GCAGTGCCTTTCCCAATGTTTATA 59.840 41.667 2.85 0.00 31.50 0.98
3379 3658 0.326264 ATTGGACACTCTGGGACTGC 59.674 55.000 0.00 0.00 0.00 4.40
3455 3745 5.127356 AGTTTATATATGCTACCGGCTCCTC 59.873 44.000 0.00 0.00 42.39 3.71
3462 3780 8.383619 GCAATCAAGAGTTTATATATGCTACCG 58.616 37.037 0.00 0.00 0.00 4.02
3471 3789 8.743085 ACACATGAGCAATCAAGAGTTTATAT 57.257 30.769 0.00 0.00 0.00 0.86
3710 4030 2.223340 CGCCATGCAGAAAGATGGTTAC 60.223 50.000 3.82 0.00 41.22 2.50
3731 4061 3.198409 TGTGTATGTGATCCTGCCATC 57.802 47.619 0.00 0.00 0.00 3.51
3771 4101 6.095160 AGACATCATTGCTCTTGAAATCCTTC 59.905 38.462 0.00 0.00 0.00 3.46
3798 4128 2.158928 TGCCACTGCAATTTGCTTCTTT 60.159 40.909 21.19 0.00 46.66 2.52
3907 4237 8.875168 ACCAACCATTCCAAATAAAATTGAGTA 58.125 29.630 0.00 0.00 31.84 2.59
3924 4254 7.602265 GCAAACAGAAATAACATACCAACCATT 59.398 33.333 0.00 0.00 0.00 3.16
3933 4263 6.310956 GCTGCATTGCAAACAGAAATAACATA 59.689 34.615 27.79 0.00 38.41 2.29
4039 5115 4.765339 GGGAGTACCACATAAAAAGCAAGT 59.235 41.667 0.00 0.00 39.85 3.16
4049 5125 3.194116 GTGAACGAAGGGAGTACCACATA 59.806 47.826 0.00 0.00 43.89 2.29
4234 5472 7.761608 TCCTTTATAGTTTGAGGGGAAAAGAA 58.238 34.615 0.00 0.00 0.00 2.52
4284 5522 5.499004 ACTAATCCTTTGTAGTCTTGCCA 57.501 39.130 0.00 0.00 0.00 4.92
4295 5533 3.573967 ACTTGGTGGCAACTAATCCTTTG 59.426 43.478 3.27 0.00 37.61 2.77
4380 5640 5.758296 TGTGAATGAAGCTCGAAGTTAAGTT 59.242 36.000 0.00 0.00 0.00 2.66
4427 5689 3.004524 GCCTCATCATCATCCTGAAAAGC 59.995 47.826 0.00 0.00 0.00 3.51
4604 5879 4.578928 TCTTTACCAAGGAAGTCAAACTGC 59.421 41.667 0.00 0.00 0.00 4.40
4670 5945 4.552767 CGGAATTCCTCAATCGCATTGTAC 60.553 45.833 22.05 0.00 41.02 2.90
4694 5969 1.372501 AAGCATGGGAGGTACCAGTT 58.627 50.000 15.94 0.00 45.20 3.16
4739 6025 5.358922 ACACATGTGAACAAATTTTCCAGG 58.641 37.500 31.94 0.00 0.00 4.45
4776 6101 4.829872 TCTCCGTCCTTTTTGCCTATAA 57.170 40.909 0.00 0.00 0.00 0.98
4777 6102 4.202326 GGATCTCCGTCCTTTTTGCCTATA 60.202 45.833 0.00 0.00 35.32 1.31
4778 6103 3.433740 GGATCTCCGTCCTTTTTGCCTAT 60.434 47.826 0.00 0.00 35.32 2.57
4792 6117 3.257393 CTTGTCAAAGACAGGATCTCCG 58.743 50.000 3.48 0.00 43.69 4.63
4958 6297 5.182001 ACAAATAATCACTTCACTGAGCCAC 59.818 40.000 0.00 0.00 0.00 5.01
5066 6448 6.211584 AGTGGTGACTGTTACATTGATAGACT 59.788 38.462 5.05 0.00 0.00 3.24
5090 6472 3.332919 ACTGCAGCAACTGAAGATACAG 58.667 45.455 15.27 3.34 39.42 2.74
5149 6531 7.651704 GGTAATCACATTAAACATGGTAATGCC 59.348 37.037 22.03 14.36 40.93 4.40
5174 6556 5.817816 GGAACAGAGGAAGTACATAACATGG 59.182 44.000 0.00 0.00 33.60 3.66
5222 6604 9.595823 CTCCGTTCCTAAATATAAGTCTTGAAA 57.404 33.333 0.00 0.00 0.00 2.69
5223 6605 8.202137 CCTCCGTTCCTAAATATAAGTCTTGAA 58.798 37.037 0.00 0.00 0.00 2.69
5224 6606 7.201974 CCCTCCGTTCCTAAATATAAGTCTTGA 60.202 40.741 0.00 0.00 0.00 3.02
5225 6607 6.929606 CCCTCCGTTCCTAAATATAAGTCTTG 59.070 42.308 0.00 0.00 0.00 3.02
5226 6608 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5227 6609 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5228 6610 6.492772 TCTCCCTCCGTTCCTAAATATAAGTC 59.507 42.308 0.00 0.00 0.00 3.01
5229 6611 6.379579 TCTCCCTCCGTTCCTAAATATAAGT 58.620 40.000 0.00 0.00 0.00 2.24
5230 6612 6.912951 TCTCCCTCCGTTCCTAAATATAAG 57.087 41.667 0.00 0.00 0.00 1.73
5231 6613 7.511371 TCAATCTCCCTCCGTTCCTAAATATAA 59.489 37.037 0.00 0.00 0.00 0.98
5232 6614 7.014449 TCAATCTCCCTCCGTTCCTAAATATA 58.986 38.462 0.00 0.00 0.00 0.86
5233 6615 5.844516 TCAATCTCCCTCCGTTCCTAAATAT 59.155 40.000 0.00 0.00 0.00 1.28
5234 6616 5.213519 TCAATCTCCCTCCGTTCCTAAATA 58.786 41.667 0.00 0.00 0.00 1.40
5235 6617 4.037927 TCAATCTCCCTCCGTTCCTAAAT 58.962 43.478 0.00 0.00 0.00 1.40
5236 6618 3.446968 TCAATCTCCCTCCGTTCCTAAA 58.553 45.455 0.00 0.00 0.00 1.85
5237 6619 3.110293 TCAATCTCCCTCCGTTCCTAA 57.890 47.619 0.00 0.00 0.00 2.69
5238 6620 2.840640 TCAATCTCCCTCCGTTCCTA 57.159 50.000 0.00 0.00 0.00 2.94
5239 6621 1.952621 TTCAATCTCCCTCCGTTCCT 58.047 50.000 0.00 0.00 0.00 3.36
5240 6622 2.781681 TTTCAATCTCCCTCCGTTCC 57.218 50.000 0.00 0.00 0.00 3.62
5241 6623 4.143986 AGATTTCAATCTCCCTCCGTTC 57.856 45.455 0.00 0.00 41.82 3.95
5269 6651 9.453830 ACTCCCTTCATTCCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
5279 6661 9.640952 CCAATAAAATACTCCCTTCATTCCTAA 57.359 33.333 0.00 0.00 0.00 2.69
5280 6662 8.787818 ACCAATAAAATACTCCCTTCATTCCTA 58.212 33.333 0.00 0.00 0.00 2.94
5281 6663 7.652554 ACCAATAAAATACTCCCTTCATTCCT 58.347 34.615 0.00 0.00 0.00 3.36
5282 6664 7.014326 GGACCAATAAAATACTCCCTTCATTCC 59.986 40.741 0.00 0.00 0.00 3.01
5283 6665 7.559897 TGGACCAATAAAATACTCCCTTCATTC 59.440 37.037 0.00 0.00 0.00 2.67
5284 6666 7.418378 TGGACCAATAAAATACTCCCTTCATT 58.582 34.615 0.00 0.00 0.00 2.57
5285 6667 6.980577 TGGACCAATAAAATACTCCCTTCAT 58.019 36.000 0.00 0.00 0.00 2.57
5286 6668 6.395780 TGGACCAATAAAATACTCCCTTCA 57.604 37.500 0.00 0.00 0.00 3.02
5287 6669 7.712204 TTTGGACCAATAAAATACTCCCTTC 57.288 36.000 7.99 0.00 0.00 3.46
5288 6670 9.777008 TTATTTGGACCAATAAAATACTCCCTT 57.223 29.630 7.99 0.00 0.00 3.95
5289 6671 9.777008 TTTATTTGGACCAATAAAATACTCCCT 57.223 29.630 7.99 0.00 0.00 4.20
5345 6727 4.104738 AGGGTTCCATCTTCTGTTTCTTCA 59.895 41.667 0.00 0.00 0.00 3.02
5572 6954 2.809696 ACCACGACCAACCTTTAATTCG 59.190 45.455 0.00 0.00 0.00 3.34
5626 7008 6.826741 ACAAAAGAGCTTACAGGACAAAGTAA 59.173 34.615 0.00 0.00 0.00 2.24
5683 7065 4.409570 CCAAATCTTTGTTCAGCTCATCG 58.590 43.478 2.29 0.00 36.45 3.84
5813 7196 3.953612 TGCTCCACTCTTTGTTCAAATGT 59.046 39.130 0.00 0.00 0.00 2.71
5928 7311 1.739067 CCACCGTCTTCAAATCCTCC 58.261 55.000 0.00 0.00 0.00 4.30
5946 7329 4.464008 TGATCTTTGATGTCCCTAATGCC 58.536 43.478 0.00 0.00 0.00 4.40
5979 7362 2.104111 CCATGCTACCGTAATTCTGGGA 59.896 50.000 1.40 0.00 0.00 4.37
5982 7365 2.287915 GCACCATGCTACCGTAATTCTG 59.712 50.000 0.00 0.00 40.96 3.02
6133 7516 9.199982 GGCACGAACTACTAAATGCTATAATTA 57.800 33.333 0.00 0.00 33.57 1.40
6138 7521 4.141801 TGGGCACGAACTACTAAATGCTAT 60.142 41.667 0.00 0.00 33.57 2.97
6147 7532 0.900647 AGAGCTGGGCACGAACTACT 60.901 55.000 0.00 0.00 0.00 2.57
6154 7539 0.320771 AAGTAACAGAGCTGGGCACG 60.321 55.000 0.00 0.00 34.19 5.34
6159 7544 3.742640 GCATAGGGAAGTAACAGAGCTGG 60.743 52.174 0.00 0.00 34.19 4.85
6161 7546 3.379452 AGCATAGGGAAGTAACAGAGCT 58.621 45.455 0.00 0.00 0.00 4.09
6162 7547 3.828875 AGCATAGGGAAGTAACAGAGC 57.171 47.619 0.00 0.00 0.00 4.09
6195 7580 1.703411 AGCCAAGCCAAGCAAGTAAA 58.297 45.000 0.00 0.00 0.00 2.01
6199 7584 3.323751 AAAATAGCCAAGCCAAGCAAG 57.676 42.857 0.00 0.00 0.00 4.01
6200 7585 3.401182 CAAAAATAGCCAAGCCAAGCAA 58.599 40.909 0.00 0.00 0.00 3.91
6201 7586 2.871236 GCAAAAATAGCCAAGCCAAGCA 60.871 45.455 0.00 0.00 0.00 3.91
6202 7587 1.733912 GCAAAAATAGCCAAGCCAAGC 59.266 47.619 0.00 0.00 0.00 4.01
6203 7588 2.997986 CAGCAAAAATAGCCAAGCCAAG 59.002 45.455 0.00 0.00 0.00 3.61
6204 7589 2.632028 TCAGCAAAAATAGCCAAGCCAA 59.368 40.909 0.00 0.00 0.00 4.52
6205 7590 2.029110 GTCAGCAAAAATAGCCAAGCCA 60.029 45.455 0.00 0.00 0.00 4.75
6206 7591 2.029110 TGTCAGCAAAAATAGCCAAGCC 60.029 45.455 0.00 0.00 0.00 4.35
6207 7592 3.057315 TCTGTCAGCAAAAATAGCCAAGC 60.057 43.478 0.00 0.00 0.00 4.01
6208 7593 4.771590 TCTGTCAGCAAAAATAGCCAAG 57.228 40.909 0.00 0.00 0.00 3.61
6209 7594 5.726980 AATCTGTCAGCAAAAATAGCCAA 57.273 34.783 0.00 0.00 0.00 4.52
6210 7595 5.726980 AAATCTGTCAGCAAAAATAGCCA 57.273 34.783 0.00 0.00 0.00 4.75
6211 7596 6.158598 TGAAAATCTGTCAGCAAAAATAGCC 58.841 36.000 0.00 0.00 0.00 3.93
6212 7597 7.274442 CTGAAAATCTGTCAGCAAAAATAGC 57.726 36.000 0.00 0.00 36.38 2.97
6252 7637 2.178580 TCCATTGCCCATCCAAACTTC 58.821 47.619 0.00 0.00 0.00 3.01
6273 7658 0.824109 ATCTGAAATCCGGCTCGACA 59.176 50.000 0.00 0.00 0.00 4.35
6415 7801 1.306997 CCAGGAGCAGGGGGACTTA 60.307 63.158 0.00 0.00 0.00 2.24
6421 7807 1.606531 CTTCTTCCAGGAGCAGGGG 59.393 63.158 0.00 0.00 0.00 4.79
6449 7835 4.566426 AAGAGCCTACAAAGAGAATGCT 57.434 40.909 0.00 0.00 0.00 3.79
6475 7861 7.016661 ACAGAAGAGAAGATGGGTAGAAAGAAA 59.983 37.037 0.00 0.00 0.00 2.52
6476 7862 6.498651 ACAGAAGAGAAGATGGGTAGAAAGAA 59.501 38.462 0.00 0.00 0.00 2.52
6477 7863 6.019748 ACAGAAGAGAAGATGGGTAGAAAGA 58.980 40.000 0.00 0.00 0.00 2.52
6478 7864 6.293004 ACAGAAGAGAAGATGGGTAGAAAG 57.707 41.667 0.00 0.00 0.00 2.62
6479 7865 6.954684 AGTACAGAAGAGAAGATGGGTAGAAA 59.045 38.462 0.00 0.00 0.00 2.52
6480 7866 6.494952 AGTACAGAAGAGAAGATGGGTAGAA 58.505 40.000 0.00 0.00 0.00 2.10
6536 7922 1.067706 CGTCAGCCCAAATGAAATGCA 60.068 47.619 0.00 0.00 0.00 3.96
6537 7923 1.632422 CGTCAGCCCAAATGAAATGC 58.368 50.000 0.00 0.00 0.00 3.56
6538 7924 1.818060 TCCGTCAGCCCAAATGAAATG 59.182 47.619 0.00 0.00 0.00 2.32
6539 7925 2.214376 TCCGTCAGCCCAAATGAAAT 57.786 45.000 0.00 0.00 0.00 2.17
6542 7928 2.214376 AAATCCGTCAGCCCAAATGA 57.786 45.000 0.00 0.00 0.00 2.57
6543 7929 3.734902 GCTAAAATCCGTCAGCCCAAATG 60.735 47.826 0.00 0.00 0.00 2.32
6544 7930 2.427095 GCTAAAATCCGTCAGCCCAAAT 59.573 45.455 0.00 0.00 0.00 2.32
6545 7931 1.816224 GCTAAAATCCGTCAGCCCAAA 59.184 47.619 0.00 0.00 0.00 3.28
6546 7932 1.004277 AGCTAAAATCCGTCAGCCCAA 59.996 47.619 0.00 0.00 34.49 4.12
6547 7933 0.618458 AGCTAAAATCCGTCAGCCCA 59.382 50.000 0.00 0.00 34.49 5.36
6548 7934 1.401905 CAAGCTAAAATCCGTCAGCCC 59.598 52.381 0.00 0.00 34.49 5.19
6549 7935 2.084546 ACAAGCTAAAATCCGTCAGCC 58.915 47.619 0.00 0.00 34.49 4.85
6551 7937 4.690748 TCTCAACAAGCTAAAATCCGTCAG 59.309 41.667 0.00 0.00 0.00 3.51
6552 7938 4.637276 TCTCAACAAGCTAAAATCCGTCA 58.363 39.130 0.00 0.00 0.00 4.35
6553 7939 5.179555 AGTTCTCAACAAGCTAAAATCCGTC 59.820 40.000 0.00 0.00 0.00 4.79
6554 7940 5.049405 CAGTTCTCAACAAGCTAAAATCCGT 60.049 40.000 0.00 0.00 0.00 4.69
6555 7941 5.179368 TCAGTTCTCAACAAGCTAAAATCCG 59.821 40.000 0.00 0.00 0.00 4.18
6556 7942 6.560253 TCAGTTCTCAACAAGCTAAAATCC 57.440 37.500 0.00 0.00 0.00 3.01
6557 7943 7.025963 CCATCAGTTCTCAACAAGCTAAAATC 58.974 38.462 0.00 0.00 0.00 2.17
6600 7986 9.941325 ACAGGTCATCTATATTTGAGATTGATC 57.059 33.333 0.00 0.00 31.05 2.92
6608 7994 7.561356 TCACTCTGACAGGTCATCTATATTTGA 59.439 37.037 1.81 0.00 39.13 2.69
6654 8040 1.670811 CAACACAGTTTGCTTCCTCGT 59.329 47.619 0.00 0.00 0.00 4.18
6690 8076 2.289631 CCTCAGCATCACACAACCAGTA 60.290 50.000 0.00 0.00 0.00 2.74
6721 8107 4.495019 CCACGAACAAACACTTTTCGATCA 60.495 41.667 9.73 0.00 43.83 2.92
6750 8136 0.550914 ATTCATACCCCACGGTGCAT 59.449 50.000 1.68 0.00 44.40 3.96
6816 8211 1.117749 ACAGAGCCTCAGTGTCAGCA 61.118 55.000 0.00 0.00 0.00 4.41
6825 8220 1.207089 CCATTACCGAACAGAGCCTCA 59.793 52.381 0.00 0.00 0.00 3.86
6838 8233 1.146263 CCCAGAGCGGACCATTACC 59.854 63.158 0.00 0.00 36.56 2.85
6839 8234 0.539986 TTCCCAGAGCGGACCATTAC 59.460 55.000 0.00 0.00 36.56 1.89
6840 8235 1.416401 GATTCCCAGAGCGGACCATTA 59.584 52.381 0.00 0.00 36.56 1.90
6841 8236 0.181350 GATTCCCAGAGCGGACCATT 59.819 55.000 0.00 0.00 36.56 3.16
6842 8237 0.692419 AGATTCCCAGAGCGGACCAT 60.692 55.000 0.00 0.00 36.56 3.55
6843 8238 1.306141 AGATTCCCAGAGCGGACCA 60.306 57.895 0.00 0.00 36.56 4.02
6844 8239 1.144936 CAGATTCCCAGAGCGGACC 59.855 63.158 0.00 0.00 36.56 4.46
6845 8240 0.460987 CACAGATTCCCAGAGCGGAC 60.461 60.000 0.00 0.00 36.56 4.79
6846 8241 1.617018 CCACAGATTCCCAGAGCGGA 61.617 60.000 0.00 0.00 36.56 5.54
6847 8242 1.153289 CCACAGATTCCCAGAGCGG 60.153 63.158 0.00 0.00 0.00 5.52
6848 8243 0.179089 CTCCACAGATTCCCAGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
6849 8244 1.138661 CTCTCCACAGATTCCCAGAGC 59.861 57.143 0.00 0.00 0.00 4.09
6850 8245 1.761784 CCTCTCCACAGATTCCCAGAG 59.238 57.143 0.00 0.00 0.00 3.35
6851 8246 1.362584 TCCTCTCCACAGATTCCCAGA 59.637 52.381 0.00 0.00 0.00 3.86
6852 8247 1.871418 TCCTCTCCACAGATTCCCAG 58.129 55.000 0.00 0.00 0.00 4.45
6853 8248 2.575921 ATCCTCTCCACAGATTCCCA 57.424 50.000 0.00 0.00 0.00 4.37
6854 8249 5.312079 CATTTATCCTCTCCACAGATTCCC 58.688 45.833 0.00 0.00 0.00 3.97
6855 8250 5.312079 CCATTTATCCTCTCCACAGATTCC 58.688 45.833 0.00 0.00 0.00 3.01
6856 8251 4.759183 GCCATTTATCCTCTCCACAGATTC 59.241 45.833 0.00 0.00 0.00 2.52
6857 8252 4.166725 TGCCATTTATCCTCTCCACAGATT 59.833 41.667 0.00 0.00 0.00 2.40
6858 8253 3.718434 TGCCATTTATCCTCTCCACAGAT 59.282 43.478 0.00 0.00 0.00 2.90
6859 8254 3.114606 TGCCATTTATCCTCTCCACAGA 58.885 45.455 0.00 0.00 0.00 3.41
6860 8255 3.565764 TGCCATTTATCCTCTCCACAG 57.434 47.619 0.00 0.00 0.00 3.66
6861 8256 3.266772 AGTTGCCATTTATCCTCTCCACA 59.733 43.478 0.00 0.00 0.00 4.17
6862 8257 3.879892 GAGTTGCCATTTATCCTCTCCAC 59.120 47.826 0.00 0.00 0.00 4.02
6863 8258 3.117888 GGAGTTGCCATTTATCCTCTCCA 60.118 47.826 0.00 0.00 39.67 3.86
6864 8259 3.117888 TGGAGTTGCCATTTATCCTCTCC 60.118 47.826 0.00 0.00 43.33 3.71
6865 8260 4.156455 TGGAGTTGCCATTTATCCTCTC 57.844 45.455 0.00 0.00 43.33 3.20
6876 8271 1.686052 GTCAAAATGGTGGAGTTGCCA 59.314 47.619 0.00 0.00 46.96 4.92
6877 8272 1.000843 GGTCAAAATGGTGGAGTTGCC 59.999 52.381 0.00 0.00 37.10 4.52
6878 8273 1.963515 AGGTCAAAATGGTGGAGTTGC 59.036 47.619 0.00 0.00 0.00 4.17
6879 8274 4.141287 TGTAGGTCAAAATGGTGGAGTTG 58.859 43.478 0.00 0.00 0.00 3.16
6880 8275 4.398319 CTGTAGGTCAAAATGGTGGAGTT 58.602 43.478 0.00 0.00 0.00 3.01
6881 8276 3.810743 GCTGTAGGTCAAAATGGTGGAGT 60.811 47.826 0.00 0.00 0.00 3.85
6882 8277 2.749621 GCTGTAGGTCAAAATGGTGGAG 59.250 50.000 0.00 0.00 0.00 3.86
6883 8278 2.375174 AGCTGTAGGTCAAAATGGTGGA 59.625 45.455 0.00 0.00 0.00 4.02
6884 8279 2.749621 GAGCTGTAGGTCAAAATGGTGG 59.250 50.000 6.23 0.00 41.81 4.61
6885 8280 2.749621 GGAGCTGTAGGTCAAAATGGTG 59.250 50.000 12.54 0.00 43.82 4.17
6886 8281 2.615493 CGGAGCTGTAGGTCAAAATGGT 60.615 50.000 12.54 0.00 43.82 3.55
6887 8282 2.009774 CGGAGCTGTAGGTCAAAATGG 58.990 52.381 12.54 0.00 43.82 3.16
6903 8298 2.517402 AGAGCGGAGTAGGCGGAG 60.517 66.667 0.00 0.00 35.00 4.63
6904 8299 2.829003 CAGAGCGGAGTAGGCGGA 60.829 66.667 0.00 0.00 35.00 5.54
6905 8300 3.905678 CCAGAGCGGAGTAGGCGG 61.906 72.222 0.00 0.00 36.56 6.13
6906 8301 3.905678 CCCAGAGCGGAGTAGGCG 61.906 72.222 0.00 0.00 36.56 5.52
6907 8302 2.442272 TCCCAGAGCGGAGTAGGC 60.442 66.667 0.00 0.00 36.56 3.93
6908 8303 3.849064 CTCCCAGAGCGGAGTAGG 58.151 66.667 0.00 0.00 43.94 3.18
6917 8312 2.583520 GCTCCACAGCTCCCAGAG 59.416 66.667 0.00 0.00 43.09 3.35
6918 8313 3.385384 CGCTCCACAGCTCCCAGA 61.385 66.667 0.00 0.00 44.40 3.86
6919 8314 4.463879 CCGCTCCACAGCTCCCAG 62.464 72.222 0.00 0.00 44.40 4.45
6921 8316 4.154347 CTCCGCTCCACAGCTCCC 62.154 72.222 0.00 0.00 44.40 4.30
6922 8317 3.386237 ACTCCGCTCCACAGCTCC 61.386 66.667 0.00 0.00 44.40 4.70
6923 8318 2.125753 CACTCCGCTCCACAGCTC 60.126 66.667 0.00 0.00 44.40 4.09
6924 8319 2.601666 TCACTCCGCTCCACAGCT 60.602 61.111 0.00 0.00 44.40 4.24
6925 8320 2.433318 GTCACTCCGCTCCACAGC 60.433 66.667 0.00 0.00 42.96 4.40
6926 8321 2.126307 CGTCACTCCGCTCCACAG 60.126 66.667 0.00 0.00 0.00 3.66
6935 8330 3.112709 GCTGTTCGGCGTCACTCC 61.113 66.667 6.85 0.00 0.00 3.85
6936 8331 3.112709 GGCTGTTCGGCGTCACTC 61.113 66.667 6.85 2.08 0.00 3.51
6937 8332 4.681978 GGGCTGTTCGGCGTCACT 62.682 66.667 6.85 0.00 39.52 3.41
6943 8338 2.932130 GATCTCAGGGGCTGTTCGGC 62.932 65.000 0.00 0.00 32.61 5.54
6944 8339 1.144936 GATCTCAGGGGCTGTTCGG 59.855 63.158 0.00 0.00 32.61 4.30
6945 8340 0.179089 CAGATCTCAGGGGCTGTTCG 60.179 60.000 0.00 0.00 32.61 3.95
6946 8341 0.179936 CCAGATCTCAGGGGCTGTTC 59.820 60.000 0.00 0.00 32.61 3.18
6947 8342 0.548682 ACCAGATCTCAGGGGCTGTT 60.549 55.000 4.24 0.00 32.61 3.16
6948 8343 0.548682 AACCAGATCTCAGGGGCTGT 60.549 55.000 4.24 0.00 32.61 4.40
6949 8344 0.179936 GAACCAGATCTCAGGGGCTG 59.820 60.000 4.24 0.00 0.00 4.85
6950 8345 0.043940 AGAACCAGATCTCAGGGGCT 59.956 55.000 4.24 0.00 0.00 5.19
6951 8346 0.179936 CAGAACCAGATCTCAGGGGC 59.820 60.000 4.24 0.00 0.00 5.80
6952 8347 0.835941 CCAGAACCAGATCTCAGGGG 59.164 60.000 4.24 0.00 0.00 4.79
6953 8348 0.179936 GCCAGAACCAGATCTCAGGG 59.820 60.000 4.24 0.29 0.00 4.45
6954 8349 1.134461 CAGCCAGAACCAGATCTCAGG 60.134 57.143 0.00 0.00 0.00 3.86
6955 8350 1.134461 CCAGCCAGAACCAGATCTCAG 60.134 57.143 0.00 0.00 0.00 3.35
6956 8351 0.907486 CCAGCCAGAACCAGATCTCA 59.093 55.000 0.00 0.00 0.00 3.27
6957 8352 0.463474 GCCAGCCAGAACCAGATCTC 60.463 60.000 0.00 0.00 0.00 2.75
6958 8353 1.203441 TGCCAGCCAGAACCAGATCT 61.203 55.000 0.00 0.00 0.00 2.75
6959 8354 0.747283 CTGCCAGCCAGAACCAGATC 60.747 60.000 0.00 0.00 44.64 2.75
7000 8395 7.914427 AATCACACCACTCTATTATAGGACA 57.086 36.000 0.00 0.00 0.00 4.02
7003 8617 9.396022 ACAAAAATCACACCACTCTATTATAGG 57.604 33.333 0.00 0.00 0.00 2.57
7028 10658 1.870402 CCCGTTTCCCAAAATTGCAAC 59.130 47.619 0.00 0.00 0.00 4.17
7029 10659 1.486726 ACCCGTTTCCCAAAATTGCAA 59.513 42.857 0.00 0.00 0.00 4.08
7032 10662 3.186702 ACAACCCGTTTCCCAAAATTG 57.813 42.857 0.00 0.00 0.00 2.32
7183 10813 5.163457 ACCAAACAAATCCGAACAAGTGAAT 60.163 36.000 0.00 0.00 0.00 2.57
7194 10824 1.231221 TCACCGACCAAACAAATCCG 58.769 50.000 0.00 0.00 0.00 4.18
7218 10848 5.189928 TCTGTAACACACAACCAAAGATGT 58.810 37.500 0.00 0.00 36.48 3.06
7225 10855 4.274147 ACCAAATCTGTAACACACAACCA 58.726 39.130 0.00 0.00 36.48 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.