Multiple sequence alignment - TraesCS7B01G201700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G201700 chr7B 100.000 6122 0 0 1 6122 368809207 368803086 0.000000e+00 11306.0
1 TraesCS7B01G201700 chr7B 81.831 721 98 27 1 713 169309864 169310559 5.320000e-160 575.0
2 TraesCS7B01G201700 chr7B 82.579 442 51 14 3364 3785 368805600 368805165 3.490000e-97 366.0
3 TraesCS7B01G201700 chr7B 82.579 442 51 14 3608 4043 368805844 368805423 3.490000e-97 366.0
4 TraesCS7B01G201700 chr7B 83.280 311 34 16 3208 3511 368805326 368805027 2.810000e-68 270.0
5 TraesCS7B01G201700 chr7B 83.280 311 34 16 3882 4181 368806000 368805697 2.810000e-68 270.0
6 TraesCS7B01G201700 chr7B 87.500 144 16 2 3208 3350 368805583 368805441 1.370000e-36 165.0
7 TraesCS7B01G201700 chr7B 87.500 144 16 2 3625 3767 368806000 368805858 1.370000e-36 165.0
8 TraesCS7B01G201700 chr7B 87.500 144 14 4 3194 3334 368805842 368805700 4.910000e-36 163.0
9 TraesCS7B01G201700 chr7B 87.500 144 14 4 3366 3508 368806014 368805874 4.910000e-36 163.0
10 TraesCS7B01G201700 chr7A 93.214 3183 140 36 2464 5593 419779180 419776021 0.000000e+00 4612.0
11 TraesCS7B01G201700 chr7A 95.931 1671 60 4 784 2451 419780824 419779159 0.000000e+00 2702.0
12 TraesCS7B01G201700 chr7A 90.741 270 24 1 5808 6077 419776028 419775760 5.830000e-95 359.0
13 TraesCS7B01G201700 chr7A 81.136 440 61 13 3364 3785 419778027 419777592 3.540000e-87 333.0
14 TraesCS7B01G201700 chr7A 82.803 314 35 16 3882 4184 419778431 419778126 4.710000e-66 263.0
15 TraesCS7B01G201700 chr7A 82.581 310 35 14 3208 3511 419777752 419777456 7.870000e-64 255.0
16 TraesCS7B01G201700 chr7A 86.335 161 18 3 3625 3784 419778431 419778274 8.160000e-39 172.0
17 TraesCS7B01G201700 chr7A 87.770 139 15 2 3372 3509 419778441 419778304 1.770000e-35 161.0
18 TraesCS7B01G201700 chr7D 94.696 1659 69 10 769 2420 373656604 373654958 0.000000e+00 2558.0
19 TraesCS7B01G201700 chr7D 88.147 2067 138 46 3606 5593 373654057 373652019 0.000000e+00 2361.0
20 TraesCS7B01G201700 chr7D 92.095 1341 82 16 2483 3811 373654931 373653603 0.000000e+00 1868.0
21 TraesCS7B01G201700 chr7D 89.890 455 37 4 1007 1460 552932788 552933234 1.480000e-160 577.0
22 TraesCS7B01G201700 chr7D 82.315 311 43 9 3208 3511 373653788 373653483 6.090000e-65 259.0
23 TraesCS7B01G201700 chr7D 82.334 317 18 12 5808 6122 373652026 373651746 2.210000e-59 241.0
24 TraesCS7B01G201700 chr7D 81.533 287 36 15 3908 4184 373654184 373653905 2.870000e-53 220.0
25 TraesCS7B01G201700 chr7D 89.231 130 11 3 4063 4192 373653774 373653648 6.350000e-35 159.0
26 TraesCS7B01G201700 chr7D 85.714 133 15 4 3378 3509 373654212 373654083 2.980000e-28 137.0
27 TraesCS7B01G201700 chr7D 85.271 129 17 1 3625 3753 373654209 373654083 1.380000e-26 132.0
28 TraesCS7B01G201700 chr2A 85.164 883 90 23 2995 3858 731540698 731541558 0.000000e+00 867.0
29 TraesCS7B01G201700 chr2A 83.453 695 87 19 3608 4289 731541058 731541737 6.740000e-174 621.0
30 TraesCS7B01G201700 chr2A 80.387 724 110 24 1 713 38785110 38785812 7.030000e-144 521.0
31 TraesCS7B01G201700 chr2A 90.146 274 25 1 2720 2993 731540383 731540654 7.550000e-94 355.0
32 TraesCS7B01G201700 chr2A 81.519 395 52 9 1592 1983 748876690 748876314 7.710000e-79 305.0
33 TraesCS7B01G201700 chr2A 83.923 311 39 11 3208 3511 731541322 731541628 2.790000e-73 287.0
34 TraesCS7B01G201700 chr2A 76.586 457 81 20 110 561 603565796 603566231 1.720000e-55 228.0
35 TraesCS7B01G201700 chr2A 80.189 318 38 15 3882 4189 731540902 731541204 1.340000e-51 215.0
36 TraesCS7B01G201700 chr2A 88.028 142 14 3 4048 4189 731541322 731541460 1.370000e-36 165.0
37 TraesCS7B01G201700 chr2A 84.472 161 22 3 3607 3767 731540887 731541044 8.220000e-34 156.0
38 TraesCS7B01G201700 chr2A 85.106 141 20 1 3372 3511 731541312 731541452 6.400000e-30 143.0
39 TraesCS7B01G201700 chr2A 83.974 156 11 8 2563 2716 731540127 731540270 2.980000e-28 137.0
40 TraesCS7B01G201700 chr1D 83.934 722 92 20 1 713 249745921 249746627 0.000000e+00 669.0
41 TraesCS7B01G201700 chr1D 81.571 662 94 22 63 713 31676709 31676065 7.030000e-144 521.0
42 TraesCS7B01G201700 chr2D 82.270 705 100 20 12 713 608381865 608381183 2.460000e-163 586.0
43 TraesCS7B01G201700 chr3D 82.200 691 89 28 34 713 39312995 39313662 1.150000e-156 564.0
44 TraesCS7B01G201700 chrUn 83.025 648 74 29 77 713 28721630 28722252 6.930000e-154 555.0
45 TraesCS7B01G201700 chr6B 80.556 720 110 24 1 713 717809043 717808347 1.510000e-145 527.0
46 TraesCS7B01G201700 chr5D 80.830 699 106 21 29 713 47334597 47335281 1.960000e-144 523.0
47 TraesCS7B01G201700 chr6A 80.895 581 80 17 1407 1982 490994212 490994766 4.380000e-116 429.0
48 TraesCS7B01G201700 chr3B 81.312 503 60 18 1407 1904 542642957 542642484 1.610000e-100 377.0
49 TraesCS7B01G201700 chr5A 88.235 68 7 1 5616 5682 676263865 676263932 5.090000e-11 80.5
50 TraesCS7B01G201700 chr4B 89.796 49 2 1 4329 4377 622773239 622773284 6.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G201700 chr7B 368803086 368809207 6121 True 11306.000000 11306 100.000000 1 6122 1 chr7B.!!$R1 6121
1 TraesCS7B01G201700 chr7B 169309864 169310559 695 False 575.000000 575 81.831000 1 713 1 chr7B.!!$F1 712
2 TraesCS7B01G201700 chr7B 368805027 368806014 987 True 241.000000 366 85.214750 3194 4181 8 chr7B.!!$R2 987
3 TraesCS7B01G201700 chr7A 419775760 419780824 5064 True 1107.125000 4612 87.563875 784 6077 8 chr7A.!!$R1 5293
4 TraesCS7B01G201700 chr7D 373651746 373656604 4858 True 881.666667 2558 86.815111 769 6122 9 chr7D.!!$R1 5353
5 TraesCS7B01G201700 chr2A 38785110 38785812 702 False 521.000000 521 80.387000 1 713 1 chr2A.!!$F1 712
6 TraesCS7B01G201700 chr2A 731540127 731541737 1610 False 327.333333 867 84.939444 2563 4289 9 chr2A.!!$F3 1726
7 TraesCS7B01G201700 chr1D 249745921 249746627 706 False 669.000000 669 83.934000 1 713 1 chr1D.!!$F1 712
8 TraesCS7B01G201700 chr1D 31676065 31676709 644 True 521.000000 521 81.571000 63 713 1 chr1D.!!$R1 650
9 TraesCS7B01G201700 chr2D 608381183 608381865 682 True 586.000000 586 82.270000 12 713 1 chr2D.!!$R1 701
10 TraesCS7B01G201700 chr3D 39312995 39313662 667 False 564.000000 564 82.200000 34 713 1 chr3D.!!$F1 679
11 TraesCS7B01G201700 chrUn 28721630 28722252 622 False 555.000000 555 83.025000 77 713 1 chrUn.!!$F1 636
12 TraesCS7B01G201700 chr6B 717808347 717809043 696 True 527.000000 527 80.556000 1 713 1 chr6B.!!$R1 712
13 TraesCS7B01G201700 chr5D 47334597 47335281 684 False 523.000000 523 80.830000 29 713 1 chr5D.!!$F1 684
14 TraesCS7B01G201700 chr6A 490994212 490994766 554 False 429.000000 429 80.895000 1407 1982 1 chr6A.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 362 0.934436 CAAAACTGTGCCTTTCGCGG 60.934 55.000 6.13 0.00 42.08 6.46 F
959 1007 1.078918 TCCACTCATCAAGCGCCTG 60.079 57.895 2.29 0.00 0.00 4.85 F
1913 1972 0.687427 TCATGACGAGATGGGGCAGA 60.687 55.000 0.00 0.00 0.00 4.26 F
2615 2694 0.038166 GCACCTCCAATTCCAGTGGA 59.962 55.000 8.12 8.12 43.03 4.02 F
2887 3076 1.438651 TTGCTCATTTTCCTCGGACG 58.561 50.000 0.00 0.00 0.00 4.79 F
3144 3378 2.286872 CATCTCAGCAGCCTTGGTTAG 58.713 52.381 0.00 0.00 31.36 2.34 F
4919 5469 0.041312 CCCGTTTTGAGTTGCGACTG 60.041 55.000 12.53 0.00 35.88 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 1304 1.545875 CCGACCAACCAACCAACCATA 60.546 52.381 0.00 0.00 0.00 2.74 R
2371 2434 0.461516 ATCATCACACAGCAGGCTCG 60.462 55.000 0.00 0.00 0.00 5.03 R
2887 3076 1.606668 TCAAGCCGGACAACAAACATC 59.393 47.619 5.05 0.00 0.00 3.06 R
4254 4762 2.173569 ACAAGCAGAGGAGAAAAGGTGT 59.826 45.455 0.00 0.00 0.00 4.16 R
4660 5208 0.945743 TGTGCGACTGCTGACATCAC 60.946 55.000 0.00 3.43 43.34 3.06 R
5038 5588 0.537143 TGTGCTTCGCTTTGGTCCAT 60.537 50.000 0.00 0.00 0.00 3.41 R
5883 6456 0.035343 TTCCACGTGGTGTTCACCAA 60.035 50.000 32.74 15.22 43.23 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 132 5.640189 ATGTGCCTCTCATGAAAGAAAAG 57.360 39.130 0.00 0.00 0.00 2.27
263 287 2.405025 CAGAAAATGCGCTTTTTCCGTC 59.595 45.455 37.47 24.60 43.49 4.79
301 325 2.802816 GTGACTCTCGTGAAAGCACAAT 59.197 45.455 0.00 0.00 45.41 2.71
325 349 2.234143 GCCTCTCTTGGAAGCAAAACT 58.766 47.619 0.00 0.00 32.03 2.66
332 356 1.484038 TGGAAGCAAAACTGTGCCTT 58.516 45.000 0.00 0.00 46.14 4.35
338 362 0.934436 CAAAACTGTGCCTTTCGCGG 60.934 55.000 6.13 0.00 42.08 6.46
342 366 1.961277 CTGTGCCTTTCGCGGAAGT 60.961 57.895 24.98 0.00 42.08 3.01
678 725 1.695893 CGACAAATGGCGCTGATCGT 61.696 55.000 7.64 0.00 40.91 3.73
699 747 1.188219 TGCGAGGCTCCTGAAGAAGT 61.188 55.000 9.32 0.00 0.00 3.01
709 757 4.499183 CTCCTGAAGAAGTGCTCGTTAAT 58.501 43.478 0.00 0.00 0.00 1.40
713 761 6.071560 TCCTGAAGAAGTGCTCGTTAATTAGA 60.072 38.462 0.00 0.00 0.00 2.10
714 762 6.254589 CCTGAAGAAGTGCTCGTTAATTAGAG 59.745 42.308 0.00 0.00 37.54 2.43
715 763 6.688578 TGAAGAAGTGCTCGTTAATTAGAGT 58.311 36.000 4.26 0.00 36.88 3.24
716 764 7.823665 TGAAGAAGTGCTCGTTAATTAGAGTA 58.176 34.615 4.26 0.00 36.88 2.59
717 765 8.467598 TGAAGAAGTGCTCGTTAATTAGAGTAT 58.532 33.333 4.26 0.00 36.88 2.12
718 766 9.947669 GAAGAAGTGCTCGTTAATTAGAGTATA 57.052 33.333 4.26 0.00 36.88 1.47
735 783 7.776618 AGAGTATAATCATCATCGGTTACCA 57.223 36.000 1.13 0.00 0.00 3.25
736 784 7.603651 AGAGTATAATCATCATCGGTTACCAC 58.396 38.462 1.13 0.00 0.00 4.16
737 785 6.387465 AGTATAATCATCATCGGTTACCACG 58.613 40.000 1.13 0.00 0.00 4.94
738 786 3.536956 AATCATCATCGGTTACCACGT 57.463 42.857 1.13 0.00 0.00 4.49
739 787 3.536956 ATCATCATCGGTTACCACGTT 57.463 42.857 1.13 0.00 0.00 3.99
740 788 3.322211 TCATCATCGGTTACCACGTTT 57.678 42.857 1.13 0.00 0.00 3.60
741 789 2.997303 TCATCATCGGTTACCACGTTTG 59.003 45.455 1.13 0.00 0.00 2.93
742 790 1.149987 TCATCGGTTACCACGTTTGC 58.850 50.000 1.13 0.00 0.00 3.68
743 791 1.153353 CATCGGTTACCACGTTTGCT 58.847 50.000 1.13 0.00 0.00 3.91
744 792 1.533731 CATCGGTTACCACGTTTGCTT 59.466 47.619 1.13 0.00 0.00 3.91
745 793 1.666054 TCGGTTACCACGTTTGCTTT 58.334 45.000 1.13 0.00 0.00 3.51
746 794 2.015587 TCGGTTACCACGTTTGCTTTT 58.984 42.857 1.13 0.00 0.00 2.27
747 795 2.422832 TCGGTTACCACGTTTGCTTTTT 59.577 40.909 1.13 0.00 0.00 1.94
778 826 4.044191 AGGGAGGTTACCAGTTTGCTATTT 59.956 41.667 3.51 0.00 0.00 1.40
787 835 3.006940 CAGTTTGCTATTTGCCCGTCTA 58.993 45.455 0.00 0.00 42.00 2.59
810 858 3.263724 AGAAGCCCATAGAAGCCCATAT 58.736 45.455 0.00 0.00 0.00 1.78
858 906 5.458779 GCCCATAAGCGTTGCTATTTAAAAG 59.541 40.000 0.00 0.00 38.25 2.27
866 914 5.332707 CGTTGCTATTTAAAAGAAGCCCTC 58.667 41.667 14.41 7.09 33.99 4.30
959 1007 1.078918 TCCACTCATCAAGCGCCTG 60.079 57.895 2.29 0.00 0.00 4.85
1269 1322 3.243602 GCGTTTCTTATGGTTGGTTGGTT 60.244 43.478 0.00 0.00 0.00 3.67
1270 1323 4.295051 CGTTTCTTATGGTTGGTTGGTTG 58.705 43.478 0.00 0.00 0.00 3.77
1271 1324 4.627058 GTTTCTTATGGTTGGTTGGTTGG 58.373 43.478 0.00 0.00 0.00 3.77
1272 1325 3.603965 TCTTATGGTTGGTTGGTTGGT 57.396 42.857 0.00 0.00 0.00 3.67
1370 1423 1.985662 ATCCCGTAACCCGAGTGCA 60.986 57.895 0.00 0.00 39.56 4.57
1394 1447 4.065789 CCCTGACTCAGTTTGTTAAGGTC 58.934 47.826 5.32 0.00 0.00 3.85
1395 1448 3.741344 CCTGACTCAGTTTGTTAAGGTCG 59.259 47.826 5.32 0.00 0.00 4.79
1398 1451 4.117685 GACTCAGTTTGTTAAGGTCGTGT 58.882 43.478 0.00 0.00 0.00 4.49
1411 1464 2.806244 AGGTCGTGTTTATGCTGTGAAC 59.194 45.455 0.00 0.00 0.00 3.18
1413 1466 3.120649 GGTCGTGTTTATGCTGTGAACTC 60.121 47.826 0.00 0.00 0.00 3.01
1445 1498 5.543507 TTGACAGGTTAAAATGGTGCATT 57.456 34.783 0.00 0.00 35.39 3.56
1446 1499 5.543507 TGACAGGTTAAAATGGTGCATTT 57.456 34.783 0.00 0.00 44.62 2.32
1877 1936 6.436738 TTGGGTTACTCAATGTGGTAAGTA 57.563 37.500 0.00 0.00 0.00 2.24
1904 1963 9.045223 CCAATATCTGTTTTATTCATGACGAGA 57.955 33.333 0.00 0.00 0.00 4.04
1913 1972 0.687427 TCATGACGAGATGGGGCAGA 60.687 55.000 0.00 0.00 0.00 4.26
1916 1975 0.904865 TGACGAGATGGGGCAGAGTT 60.905 55.000 0.00 0.00 0.00 3.01
2079 2139 9.046296 CAAGGTATTACATACTTGAATCCTGAC 57.954 37.037 0.00 0.00 36.04 3.51
2082 2142 8.643324 GGTATTACATACTTGAATCCTGACTCT 58.357 37.037 0.00 0.00 36.04 3.24
2281 2344 4.910195 TGAACATCCTGCAGTATTCTGTT 58.090 39.130 13.81 13.40 43.05 3.16
2331 2394 9.699703 GGTTTCTCTAGACCTATCATTTATCAC 57.300 37.037 0.00 0.00 33.08 3.06
2364 2427 5.920273 TCACACATGCATATATACTCACACG 59.080 40.000 0.00 0.00 0.00 4.49
2365 2428 5.691754 CACACATGCATATATACTCACACGT 59.308 40.000 0.00 0.00 0.00 4.49
2371 2434 6.206498 TGCATATATACTCACACGTGAACTC 58.794 40.000 25.01 0.00 39.39 3.01
2380 2443 2.259818 CGTGAACTCGAGCCTGCT 59.740 61.111 13.61 0.00 0.00 4.24
2381 2444 2.091112 CGTGAACTCGAGCCTGCTG 61.091 63.158 13.61 0.00 0.00 4.41
2422 2485 8.948631 TTATCTAATTAAGCAAGGACTCTGTG 57.051 34.615 0.00 0.00 0.00 3.66
2424 2487 6.166279 TCTAATTAAGCAAGGACTCTGTGTG 58.834 40.000 0.00 0.00 0.00 3.82
2426 2489 1.959042 AAGCAAGGACTCTGTGTGTG 58.041 50.000 0.00 0.00 0.00 3.82
2428 2491 0.940126 GCAAGGACTCTGTGTGTGTG 59.060 55.000 0.00 0.00 0.00 3.82
2429 2492 1.743772 GCAAGGACTCTGTGTGTGTGT 60.744 52.381 0.00 0.00 0.00 3.72
2430 2493 1.935873 CAAGGACTCTGTGTGTGTGTG 59.064 52.381 0.00 0.00 0.00 3.82
2431 2494 1.195115 AGGACTCTGTGTGTGTGTGT 58.805 50.000 0.00 0.00 0.00 3.72
2432 2495 1.134699 AGGACTCTGTGTGTGTGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
2433 2496 1.405526 GGACTCTGTGTGTGTGTGTGT 60.406 52.381 0.00 0.00 0.00 3.72
2434 2497 1.660607 GACTCTGTGTGTGTGTGTGTG 59.339 52.381 0.00 0.00 0.00 3.82
2435 2498 1.001974 ACTCTGTGTGTGTGTGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
2436 2499 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
2437 2500 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2438 2501 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2439 2502 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2440 2503 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2441 2504 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2442 2505 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2443 2506 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2444 2507 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2445 2508 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2446 2509 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2447 2510 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2448 2511 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2449 2512 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2450 2513 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2451 2514 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2452 2515 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
2453 2516 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2454 2517 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
2455 2518 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
2456 2519 2.287248 TGTGTGTGTGTGTGTGTTTGTG 60.287 45.455 0.00 0.00 0.00 3.33
2457 2520 1.950216 TGTGTGTGTGTGTGTTTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2458 2521 2.287248 TGTGTGTGTGTGTGTTTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2459 2522 1.950216 TGTGTGTGTGTGTTTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2460 2523 2.287248 TGTGTGTGTGTGTTTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2461 2524 1.950216 TGTGTGTGTGTTTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2462 2525 2.287248 TGTGTGTGTGTTTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2510 2575 7.054491 TCATGCATACACACATACATACTCT 57.946 36.000 0.00 0.00 0.00 3.24
2511 2576 7.147976 TCATGCATACACACATACATACTCTC 58.852 38.462 0.00 0.00 0.00 3.20
2537 2602 9.588774 CAAGAACAAAATTTGTGATAATGCTTG 57.411 29.630 12.50 12.18 44.59 4.01
2605 2684 2.259917 TCTGATTCTGAGCACCTCCAA 58.740 47.619 0.00 0.00 0.00 3.53
2615 2694 0.038166 GCACCTCCAATTCCAGTGGA 59.962 55.000 8.12 8.12 43.03 4.02
2693 2772 5.157781 GTTGCTACTGTTGTTTTGTTGTGA 58.842 37.500 0.00 0.00 0.00 3.58
2730 2918 9.624697 TCACACTAAAAATAGCTTTGCTTATTG 57.375 29.630 0.00 0.00 40.44 1.90
2814 3002 5.350365 TGTCCATTCAGAACTATGTAAACGC 59.650 40.000 0.00 0.00 0.00 4.84
2887 3076 1.438651 TTGCTCATTTTCCTCGGACG 58.561 50.000 0.00 0.00 0.00 4.79
2958 3147 6.548321 ACCTGAGACCTACTATGAGGATAAG 58.452 44.000 0.00 0.00 39.15 1.73
3066 3297 3.592546 TTGCCTGGCTGCAATGATA 57.407 47.368 21.03 0.00 45.77 2.15
3093 3324 4.703897 TCTTGTTAACCTGAGACCAACTG 58.296 43.478 2.48 0.00 0.00 3.16
3144 3378 2.286872 CATCTCAGCAGCCTTGGTTAG 58.713 52.381 0.00 0.00 31.36 2.34
4238 4746 6.092259 GTGAGTTCCGCTTGAGTATTTGTTAT 59.908 38.462 0.00 0.00 0.00 1.89
4271 4779 5.767816 TTTTTACACCTTTTCTCCTCTGC 57.232 39.130 0.00 0.00 0.00 4.26
4301 4809 7.604657 TGGTTCTAAAAGAAATTTAGGCCAA 57.395 32.000 5.01 0.00 46.97 4.52
4356 4890 3.018423 ACCTCTTGAACTGCCAAAACT 57.982 42.857 0.00 0.00 0.00 2.66
4362 4902 6.015940 CCTCTTGAACTGCCAAAACTTCTTAT 60.016 38.462 0.00 0.00 0.00 1.73
4407 4947 3.982058 AGACAAGCTCTCGTTAAAGTTCG 59.018 43.478 0.00 0.00 0.00 3.95
4409 4949 3.734735 ACAAGCTCTCGTTAAAGTTCGTC 59.265 43.478 0.00 0.00 0.00 4.20
4418 4966 5.433855 TCGTTAAAGTTCGTCGGAATTTTG 58.566 37.500 4.02 0.00 40.79 2.44
4453 5001 6.826893 TTTCTTTGCTATCTTTGTGTTTGC 57.173 33.333 0.00 0.00 0.00 3.68
4479 5027 9.459276 CGCTTTATTTATTTTGGAAATGAAACG 57.541 29.630 0.00 0.00 30.42 3.60
4641 5189 9.802039 TCAGGTTACCATCTTACTTTGTTTATT 57.198 29.630 3.51 0.00 0.00 1.40
4678 5226 0.945743 TGTGATGTCAGCAGTCGCAC 60.946 55.000 0.00 0.00 42.27 5.34
4795 5345 7.237920 TGAAAACATATCATCATCTGTCACG 57.762 36.000 0.00 0.00 0.00 4.35
4847 5397 3.329814 TCTCTGATTATGGCAGGCATCAT 59.670 43.478 13.81 8.16 34.20 2.45
4919 5469 0.041312 CCCGTTTTGAGTTGCGACTG 60.041 55.000 12.53 0.00 35.88 3.51
4941 5491 1.147817 ACCAGGTGAAGAAATGCCCTT 59.852 47.619 0.00 0.00 0.00 3.95
4942 5492 2.378547 ACCAGGTGAAGAAATGCCCTTA 59.621 45.455 0.00 0.00 0.00 2.69
5038 5588 3.194968 GGGACAGATCAAACGAGGAACTA 59.805 47.826 0.00 0.00 41.55 2.24
5297 5847 1.134175 GGTTGGCATGGTATTTGACGG 59.866 52.381 0.00 0.00 0.00 4.79
5312 5862 2.435586 CGGCCAAGCAGTGAGAGG 60.436 66.667 2.24 0.00 0.00 3.69
5313 5863 2.947532 CGGCCAAGCAGTGAGAGGA 61.948 63.158 2.24 0.00 0.00 3.71
5315 5865 0.463474 GGCCAAGCAGTGAGAGGATC 60.463 60.000 0.00 0.00 0.00 3.36
5426 5999 7.612668 TTTTTAAACTTTAACCAAACCCTGC 57.387 32.000 0.00 0.00 0.00 4.85
5435 6008 3.983044 ACCAAACCCTGCTACTAAGAG 57.017 47.619 0.00 0.00 0.00 2.85
5436 6009 2.572104 ACCAAACCCTGCTACTAAGAGG 59.428 50.000 0.00 0.00 0.00 3.69
5454 6027 8.524487 ACTAAGAGGACTGTAGAATACACTTTG 58.476 37.037 0.00 0.00 46.14 2.77
5458 6031 6.465084 AGGACTGTAGAATACACTTTGGAAC 58.535 40.000 0.00 0.00 46.14 3.62
5523 6096 0.320771 CTGGGGGTTCACTGAAGACG 60.321 60.000 0.00 0.00 0.00 4.18
5526 6099 1.405661 GGGGGTTCACTGAAGACGATC 60.406 57.143 0.00 0.00 0.00 3.69
5527 6100 1.275291 GGGGTTCACTGAAGACGATCA 59.725 52.381 0.00 0.00 0.00 2.92
5529 6102 3.399330 GGGTTCACTGAAGACGATCAAA 58.601 45.455 0.00 0.00 0.00 2.69
5530 6103 3.813166 GGGTTCACTGAAGACGATCAAAA 59.187 43.478 0.00 0.00 0.00 2.44
5537 6110 6.417635 TCACTGAAGACGATCAAAATTTTTGC 59.582 34.615 15.52 3.78 0.00 3.68
5596 6169 4.525411 GAGCGACACTCTTAGACTAGTC 57.475 50.000 15.41 15.41 42.62 2.59
5597 6170 3.933955 GAGCGACACTCTTAGACTAGTCA 59.066 47.826 24.44 8.16 42.62 3.41
5598 6171 3.936453 AGCGACACTCTTAGACTAGTCAG 59.064 47.826 24.44 14.89 0.00 3.51
5599 6172 3.933955 GCGACACTCTTAGACTAGTCAGA 59.066 47.826 24.44 17.25 0.00 3.27
5600 6173 4.033587 GCGACACTCTTAGACTAGTCAGAG 59.966 50.000 26.97 26.97 36.43 3.35
5601 6174 5.172934 CGACACTCTTAGACTAGTCAGAGT 58.827 45.833 27.95 27.95 41.06 3.24
5603 6176 5.811399 CACTCTTAGACTAGTCAGAGTGG 57.189 47.826 37.29 27.55 46.28 4.00
5604 6177 4.638421 CACTCTTAGACTAGTCAGAGTGGG 59.362 50.000 37.29 25.81 46.28 4.61
5605 6178 4.290196 ACTCTTAGACTAGTCAGAGTGGGT 59.710 45.833 30.69 17.77 39.79 4.51
5606 6179 5.222171 ACTCTTAGACTAGTCAGAGTGGGTT 60.222 44.000 30.69 15.37 39.79 4.11
5607 6180 6.012683 ACTCTTAGACTAGTCAGAGTGGGTTA 60.013 42.308 30.69 10.59 39.79 2.85
5608 6181 6.971340 TCTTAGACTAGTCAGAGTGGGTTAT 58.029 40.000 24.44 2.07 0.00 1.89
5609 6182 6.829298 TCTTAGACTAGTCAGAGTGGGTTATG 59.171 42.308 24.44 7.41 0.00 1.90
5610 6183 4.936802 AGACTAGTCAGAGTGGGTTATGT 58.063 43.478 24.44 0.00 0.00 2.29
5611 6184 5.334421 AGACTAGTCAGAGTGGGTTATGTT 58.666 41.667 24.44 0.00 0.00 2.71
5612 6185 5.780793 AGACTAGTCAGAGTGGGTTATGTTT 59.219 40.000 24.44 0.00 0.00 2.83
5613 6186 6.952358 AGACTAGTCAGAGTGGGTTATGTTTA 59.048 38.462 24.44 0.00 0.00 2.01
5614 6187 6.932947 ACTAGTCAGAGTGGGTTATGTTTAC 58.067 40.000 0.00 0.00 0.00 2.01
5615 6188 4.817517 AGTCAGAGTGGGTTATGTTTACG 58.182 43.478 0.00 0.00 0.00 3.18
5616 6189 3.930848 GTCAGAGTGGGTTATGTTTACGG 59.069 47.826 0.00 0.00 0.00 4.02
5617 6190 3.055675 TCAGAGTGGGTTATGTTTACGGG 60.056 47.826 0.00 0.00 0.00 5.28
5618 6191 2.237893 AGAGTGGGTTATGTTTACGGGG 59.762 50.000 0.00 0.00 0.00 5.73
5619 6192 2.236893 GAGTGGGTTATGTTTACGGGGA 59.763 50.000 0.00 0.00 0.00 4.81
5620 6193 2.237893 AGTGGGTTATGTTTACGGGGAG 59.762 50.000 0.00 0.00 0.00 4.30
5621 6194 2.026915 GTGGGTTATGTTTACGGGGAGT 60.027 50.000 0.00 0.00 0.00 3.85
5622 6195 3.197549 GTGGGTTATGTTTACGGGGAGTA 59.802 47.826 0.00 0.00 0.00 2.59
5623 6196 3.843027 TGGGTTATGTTTACGGGGAGTAA 59.157 43.478 0.00 0.00 43.05 2.24
5624 6197 4.191544 GGGTTATGTTTACGGGGAGTAAC 58.808 47.826 0.00 0.00 44.29 2.50
5625 6198 4.323409 GGGTTATGTTTACGGGGAGTAACA 60.323 45.833 0.00 0.00 44.29 2.41
5626 6199 5.430886 GGTTATGTTTACGGGGAGTAACAT 58.569 41.667 0.00 0.00 44.29 2.71
5627 6200 5.295045 GGTTATGTTTACGGGGAGTAACATG 59.705 44.000 0.00 0.00 44.29 3.21
5628 6201 4.563140 ATGTTTACGGGGAGTAACATGT 57.437 40.909 0.00 0.00 44.29 3.21
5629 6202 3.666274 TGTTTACGGGGAGTAACATGTG 58.334 45.455 0.00 0.00 44.29 3.21
5630 6203 3.071312 TGTTTACGGGGAGTAACATGTGT 59.929 43.478 0.00 0.00 44.29 3.72
5631 6204 3.322211 TTACGGGGAGTAACATGTGTG 57.678 47.619 0.00 0.00 40.15 3.82
5632 6205 0.323629 ACGGGGAGTAACATGTGTGG 59.676 55.000 0.00 0.00 0.00 4.17
5633 6206 0.323629 CGGGGAGTAACATGTGTGGT 59.676 55.000 0.00 0.00 0.00 4.16
5634 6207 1.821216 GGGGAGTAACATGTGTGGTG 58.179 55.000 0.00 0.00 0.00 4.17
5635 6208 1.073284 GGGGAGTAACATGTGTGGTGT 59.927 52.381 0.00 0.00 0.00 4.16
5636 6209 2.423577 GGGAGTAACATGTGTGGTGTC 58.576 52.381 0.00 0.00 0.00 3.67
5637 6210 2.224426 GGGAGTAACATGTGTGGTGTCA 60.224 50.000 0.00 0.00 0.00 3.58
5638 6211 3.559171 GGGAGTAACATGTGTGGTGTCAT 60.559 47.826 0.00 0.00 0.00 3.06
5639 6212 3.436704 GGAGTAACATGTGTGGTGTCATG 59.563 47.826 0.00 0.00 44.56 3.07
5640 6213 2.813754 AGTAACATGTGTGGTGTCATGC 59.186 45.455 0.00 0.00 43.34 4.06
5641 6214 1.689984 AACATGTGTGGTGTCATGCA 58.310 45.000 0.00 0.00 43.34 3.96
5642 6215 1.689984 ACATGTGTGGTGTCATGCAA 58.310 45.000 0.00 0.00 43.34 4.08
5643 6216 1.337703 ACATGTGTGGTGTCATGCAAC 59.662 47.619 0.00 0.00 43.34 4.17
5644 6217 1.337387 CATGTGTGGTGTCATGCAACA 59.663 47.619 4.08 4.08 43.58 3.33
5652 6225 5.528043 TGGTGTCATGCAACACTAAATTT 57.472 34.783 18.55 0.00 46.96 1.82
5653 6226 6.641169 TGGTGTCATGCAACACTAAATTTA 57.359 33.333 18.55 0.00 46.96 1.40
5654 6227 7.225784 TGGTGTCATGCAACACTAAATTTAT 57.774 32.000 18.55 0.00 46.96 1.40
5655 6228 7.665690 TGGTGTCATGCAACACTAAATTTATT 58.334 30.769 18.55 0.00 46.96 1.40
5656 6229 8.797438 TGGTGTCATGCAACACTAAATTTATTA 58.203 29.630 18.55 0.00 46.96 0.98
5657 6230 9.289303 GGTGTCATGCAACACTAAATTTATTAG 57.711 33.333 18.55 0.00 46.96 1.73
5658 6231 9.289303 GTGTCATGCAACACTAAATTTATTAGG 57.711 33.333 13.31 0.00 44.90 2.69
5659 6232 9.019656 TGTCATGCAACACTAAATTTATTAGGT 57.980 29.630 0.00 0.00 0.00 3.08
5660 6233 9.855021 GTCATGCAACACTAAATTTATTAGGTT 57.145 29.630 0.00 0.00 0.00 3.50
5661 6234 9.853555 TCATGCAACACTAAATTTATTAGGTTG 57.146 29.630 17.83 17.83 36.88 3.77
5662 6235 9.638239 CATGCAACACTAAATTTATTAGGTTGT 57.362 29.630 20.40 6.02 36.57 3.32
5680 6253 9.802039 TTAGGTTGTAGATTTATTTGTTCTGGT 57.198 29.630 0.00 0.00 0.00 4.00
5682 6255 9.975218 AGGTTGTAGATTTATTTGTTCTGGTAT 57.025 29.630 0.00 0.00 0.00 2.73
5692 6265 9.693739 TTTATTTGTTCTGGTATATGTGATGGT 57.306 29.630 0.00 0.00 0.00 3.55
5694 6267 8.908786 ATTTGTTCTGGTATATGTGATGGTAG 57.091 34.615 0.00 0.00 0.00 3.18
5695 6268 7.669089 TTGTTCTGGTATATGTGATGGTAGA 57.331 36.000 0.00 0.00 0.00 2.59
5696 6269 7.290110 TGTTCTGGTATATGTGATGGTAGAG 57.710 40.000 0.00 0.00 0.00 2.43
5697 6270 6.839134 TGTTCTGGTATATGTGATGGTAGAGT 59.161 38.462 0.00 0.00 0.00 3.24
5698 6271 8.002459 TGTTCTGGTATATGTGATGGTAGAGTA 58.998 37.037 0.00 0.00 0.00 2.59
5699 6272 8.857098 GTTCTGGTATATGTGATGGTAGAGTAA 58.143 37.037 0.00 0.00 0.00 2.24
5700 6273 8.405418 TCTGGTATATGTGATGGTAGAGTAAC 57.595 38.462 0.00 0.00 0.00 2.50
5701 6274 8.225416 TCTGGTATATGTGATGGTAGAGTAACT 58.775 37.037 0.00 0.00 0.00 2.24
5702 6275 9.516546 CTGGTATATGTGATGGTAGAGTAACTA 57.483 37.037 0.00 0.00 0.00 2.24
5710 6283 9.416284 TGTGATGGTAGAGTAACTATGTTATCA 57.584 33.333 0.00 0.00 33.39 2.15
5728 6301 9.842775 ATGTTATCATATGCTTCTCTTTTCTCA 57.157 29.630 0.00 0.00 31.89 3.27
5729 6302 9.842775 TGTTATCATATGCTTCTCTTTTCTCAT 57.157 29.630 0.00 0.00 0.00 2.90
5739 6312 9.950496 TGCTTCTCTTTTCTCATTAATTACTCT 57.050 29.630 0.00 0.00 0.00 3.24
5757 6330 5.368256 ACTCTTCACATCATCTGTTTTGC 57.632 39.130 0.00 0.00 35.29 3.68
5758 6331 4.083643 ACTCTTCACATCATCTGTTTTGCG 60.084 41.667 0.00 0.00 35.29 4.85
5759 6332 4.064388 TCTTCACATCATCTGTTTTGCGA 58.936 39.130 0.00 0.00 35.29 5.10
5760 6333 4.514816 TCTTCACATCATCTGTTTTGCGAA 59.485 37.500 0.00 0.00 35.29 4.70
5761 6334 4.408993 TCACATCATCTGTTTTGCGAAG 57.591 40.909 0.00 0.00 35.29 3.79
5762 6335 4.064388 TCACATCATCTGTTTTGCGAAGA 58.936 39.130 0.00 0.00 35.29 2.87
5763 6336 4.152938 TCACATCATCTGTTTTGCGAAGAG 59.847 41.667 0.00 0.00 35.29 2.85
5764 6337 3.438087 ACATCATCTGTTTTGCGAAGAGG 59.562 43.478 0.00 0.00 32.90 3.69
5765 6338 3.126001 TCATCTGTTTTGCGAAGAGGT 57.874 42.857 0.00 0.00 0.00 3.85
5766 6339 2.807967 TCATCTGTTTTGCGAAGAGGTG 59.192 45.455 4.30 4.30 0.00 4.00
5767 6340 2.325583 TCTGTTTTGCGAAGAGGTGT 57.674 45.000 0.00 0.00 0.00 4.16
5768 6341 1.939934 TCTGTTTTGCGAAGAGGTGTG 59.060 47.619 0.00 0.00 0.00 3.82
5769 6342 1.670811 CTGTTTTGCGAAGAGGTGTGT 59.329 47.619 0.00 0.00 0.00 3.72
5770 6343 1.400142 TGTTTTGCGAAGAGGTGTGTG 59.600 47.619 0.00 0.00 0.00 3.82
5771 6344 1.668751 GTTTTGCGAAGAGGTGTGTGA 59.331 47.619 0.00 0.00 0.00 3.58
5772 6345 2.254546 TTTGCGAAGAGGTGTGTGAT 57.745 45.000 0.00 0.00 0.00 3.06
5773 6346 2.254546 TTGCGAAGAGGTGTGTGATT 57.745 45.000 0.00 0.00 0.00 2.57
5774 6347 2.254546 TGCGAAGAGGTGTGTGATTT 57.745 45.000 0.00 0.00 0.00 2.17
5775 6348 2.571212 TGCGAAGAGGTGTGTGATTTT 58.429 42.857 0.00 0.00 0.00 1.82
5776 6349 3.734463 TGCGAAGAGGTGTGTGATTTTA 58.266 40.909 0.00 0.00 0.00 1.52
5777 6350 3.745975 TGCGAAGAGGTGTGTGATTTTAG 59.254 43.478 0.00 0.00 0.00 1.85
5778 6351 3.424962 GCGAAGAGGTGTGTGATTTTAGC 60.425 47.826 0.00 0.00 0.00 3.09
5779 6352 3.745975 CGAAGAGGTGTGTGATTTTAGCA 59.254 43.478 0.00 0.00 0.00 3.49
5780 6353 4.393062 CGAAGAGGTGTGTGATTTTAGCAT 59.607 41.667 0.00 0.00 0.00 3.79
5781 6354 5.446473 CGAAGAGGTGTGTGATTTTAGCATC 60.446 44.000 0.00 0.00 0.00 3.91
5782 6355 5.171339 AGAGGTGTGTGATTTTAGCATCT 57.829 39.130 0.00 0.00 0.00 2.90
5783 6356 6.299805 AGAGGTGTGTGATTTTAGCATCTA 57.700 37.500 0.00 0.00 0.00 1.98
5784 6357 6.893583 AGAGGTGTGTGATTTTAGCATCTAT 58.106 36.000 0.00 0.00 0.00 1.98
5785 6358 8.023021 AGAGGTGTGTGATTTTAGCATCTATA 57.977 34.615 0.00 0.00 0.00 1.31
5786 6359 8.654997 AGAGGTGTGTGATTTTAGCATCTATAT 58.345 33.333 0.00 0.00 0.00 0.86
5787 6360 9.277783 GAGGTGTGTGATTTTAGCATCTATATT 57.722 33.333 0.00 0.00 0.00 1.28
5815 6388 5.776716 ACCACTGTAGGTAGTTTTAGCACTA 59.223 40.000 0.90 0.00 40.98 2.74
6003 6576 9.863845 TTCGGGAATATTTTCTAAAATTTCACC 57.136 29.630 6.03 10.57 39.24 4.02
6004 6577 9.026121 TCGGGAATATTTTCTAAAATTTCACCA 57.974 29.630 6.03 0.00 39.24 4.17
6119 6694 3.136626 AGATTGTGGGGTCACTTATAGCC 59.863 47.826 0.00 0.00 43.94 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 108 5.319453 TCTTTTCTTTCATGAGAGGCACAT 58.681 37.500 12.96 0.00 0.00 3.21
106 109 4.717877 TCTTTTCTTTCATGAGAGGCACA 58.282 39.130 12.96 0.00 0.00 4.57
170 181 2.512515 GCTTTCCGCGAGAGGCAT 60.513 61.111 8.23 0.00 43.84 4.40
240 256 2.405025 CGGAAAAAGCGCATTTTCTGTC 59.595 45.455 34.79 24.00 44.80 3.51
249 265 0.876777 TCGAAGACGGAAAAAGCGCA 60.877 50.000 11.47 0.00 40.21 6.09
301 325 1.293498 GCTTCCAAGAGAGGCACGA 59.707 57.895 0.00 0.00 46.54 4.35
325 349 0.249953 TTACTTCCGCGAAAGGCACA 60.250 50.000 10.64 0.00 43.84 4.57
402 432 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
517 559 1.607148 GGTTTTTCACCGGTCTTCCTG 59.393 52.381 2.59 0.00 35.12 3.86
562 607 6.721321 CGTTTTCAGCTTTTTAGACAGGTTA 58.279 36.000 0.00 0.00 0.00 2.85
567 612 3.064271 ACGCGTTTTCAGCTTTTTAGACA 59.936 39.130 5.58 0.00 0.00 3.41
579 624 3.307829 TTTTTCGCACGCGTTTTCA 57.692 42.105 10.22 0.00 40.74 2.69
599 644 4.022329 AGCTACCTCCGGATTTTGTTTTTG 60.022 41.667 3.57 0.00 0.00 2.44
622 669 3.973516 ACGTGTCGCGCTCTGGAA 61.974 61.111 5.56 0.00 46.11 3.53
653 700 4.520846 CGCCATTTGTCGCGCTCC 62.521 66.667 5.56 0.00 42.17 4.70
661 708 0.881118 AAACGATCAGCGCCATTTGT 59.119 45.000 2.29 0.00 46.04 2.83
665 712 2.793946 GCAAACGATCAGCGCCAT 59.206 55.556 2.29 0.00 46.04 4.40
678 725 0.396435 TTCTTCAGGAGCCTCGCAAA 59.604 50.000 0.00 0.00 0.00 3.68
691 739 6.688578 ACTCTAATTAACGAGCACTTCTTCA 58.311 36.000 0.00 0.00 0.00 3.02
709 757 9.304335 TGGTAACCGATGATGATTATACTCTAA 57.696 33.333 0.00 0.00 0.00 2.10
713 761 6.015688 ACGTGGTAACCGATGATGATTATACT 60.016 38.462 0.00 0.00 34.83 2.12
714 762 6.154445 ACGTGGTAACCGATGATGATTATAC 58.846 40.000 0.00 0.00 34.83 1.47
715 763 6.335471 ACGTGGTAACCGATGATGATTATA 57.665 37.500 0.00 0.00 34.83 0.98
716 764 5.209818 ACGTGGTAACCGATGATGATTAT 57.790 39.130 0.00 0.00 34.83 1.28
717 765 4.659111 ACGTGGTAACCGATGATGATTA 57.341 40.909 0.00 0.00 34.83 1.75
718 766 3.536956 ACGTGGTAACCGATGATGATT 57.463 42.857 0.00 0.00 34.83 2.57
719 767 3.536956 AACGTGGTAACCGATGATGAT 57.463 42.857 0.00 0.00 34.83 2.45
720 768 2.997303 CAAACGTGGTAACCGATGATGA 59.003 45.455 0.00 0.00 34.83 2.92
721 769 2.475519 GCAAACGTGGTAACCGATGATG 60.476 50.000 0.00 0.00 34.83 3.07
722 770 1.735571 GCAAACGTGGTAACCGATGAT 59.264 47.619 0.00 0.00 34.83 2.45
723 771 1.149987 GCAAACGTGGTAACCGATGA 58.850 50.000 0.00 0.00 34.83 2.92
724 772 1.153353 AGCAAACGTGGTAACCGATG 58.847 50.000 0.00 0.00 32.39 3.84
725 773 1.886886 AAGCAAACGTGGTAACCGAT 58.113 45.000 0.00 0.00 34.25 4.18
726 774 1.666054 AAAGCAAACGTGGTAACCGA 58.334 45.000 0.00 0.00 34.25 4.69
727 775 2.478547 AAAAGCAAACGTGGTAACCG 57.521 45.000 0.00 0.00 34.25 4.44
749 797 4.529716 AACTGGTAACCTCCCTCAAAAA 57.470 40.909 0.00 0.00 0.00 1.94
750 798 4.211920 CAAACTGGTAACCTCCCTCAAAA 58.788 43.478 0.00 0.00 0.00 2.44
751 799 3.827722 CAAACTGGTAACCTCCCTCAAA 58.172 45.455 0.00 0.00 0.00 2.69
752 800 2.488347 GCAAACTGGTAACCTCCCTCAA 60.488 50.000 0.00 0.00 0.00 3.02
753 801 1.073284 GCAAACTGGTAACCTCCCTCA 59.927 52.381 0.00 0.00 0.00 3.86
754 802 1.351350 AGCAAACTGGTAACCTCCCTC 59.649 52.381 0.00 0.00 0.00 4.30
755 803 1.446016 AGCAAACTGGTAACCTCCCT 58.554 50.000 0.00 0.00 0.00 4.20
756 804 3.646736 ATAGCAAACTGGTAACCTCCC 57.353 47.619 0.00 0.00 33.73 4.30
757 805 4.380550 GCAAATAGCAAACTGGTAACCTCC 60.381 45.833 0.00 0.00 44.79 4.30
758 806 4.733850 GCAAATAGCAAACTGGTAACCTC 58.266 43.478 0.00 0.00 44.79 3.85
759 807 4.783764 GCAAATAGCAAACTGGTAACCT 57.216 40.909 0.00 0.00 44.79 3.50
778 826 2.058595 GGGCTTCTCTAGACGGGCA 61.059 63.158 9.48 0.00 29.87 5.36
787 835 1.135960 GGGCTTCTATGGGCTTCTCT 58.864 55.000 0.00 0.00 0.00 3.10
858 906 1.201429 TGTGGAAGGAGGAGGGCTTC 61.201 60.000 0.00 0.00 0.00 3.86
866 914 0.320771 CACGGAGTTGTGGAAGGAGG 60.321 60.000 0.00 0.00 41.61 4.30
959 1007 0.888619 GACCAAGCAAAACCCTAGCC 59.111 55.000 0.00 0.00 0.00 3.93
1255 1304 1.545875 CCGACCAACCAACCAACCATA 60.546 52.381 0.00 0.00 0.00 2.74
1370 1423 3.181443 CCTTAACAAACTGAGTCAGGGGT 60.181 47.826 23.79 14.97 35.51 4.95
1394 1447 2.729360 TCGAGTTCACAGCATAAACACG 59.271 45.455 0.00 0.00 38.01 4.49
1395 1448 4.377431 CCTTCGAGTTCACAGCATAAACAC 60.377 45.833 0.00 0.00 0.00 3.32
1398 1451 3.745975 CACCTTCGAGTTCACAGCATAAA 59.254 43.478 0.00 0.00 0.00 1.40
1411 1464 2.561569 ACCTGTCAAAACACCTTCGAG 58.438 47.619 0.00 0.00 0.00 4.04
1413 1466 4.886247 TTAACCTGTCAAAACACCTTCG 57.114 40.909 0.00 0.00 0.00 3.79
1445 1498 3.552132 TGACCAGTCAGTAAGCACAAA 57.448 42.857 0.00 0.00 34.14 2.83
1446 1499 3.552132 TTGACCAGTCAGTAAGCACAA 57.448 42.857 0.09 0.00 41.13 3.33
1559 1615 9.466497 AATCTGAAGTTGGTACACAAATGATAT 57.534 29.630 0.00 0.00 41.58 1.63
1564 1620 7.231467 ACCTAATCTGAAGTTGGTACACAAAT 58.769 34.615 0.00 0.00 41.58 2.32
1670 1729 4.134563 ACAGTAGCCAAAACTCACGAATT 58.865 39.130 0.00 0.00 0.00 2.17
1714 1773 5.777449 TCTGATATCACCTACCAGGAAGAA 58.223 41.667 0.00 0.00 37.67 2.52
1715 1774 5.403558 TCTGATATCACCTACCAGGAAGA 57.596 43.478 0.00 0.00 37.67 2.87
1877 1936 8.731275 TCGTCATGAATAAAACAGATATTGGT 57.269 30.769 0.00 0.00 0.00 3.67
1904 1963 1.617804 CCATGTTGAACTCTGCCCCAT 60.618 52.381 0.00 0.00 0.00 4.00
2331 2394 9.091784 GTATATATGCATGTGTGAATGGACTAG 57.908 37.037 10.16 0.00 30.06 2.57
2364 2427 1.005630 ACAGCAGGCTCGAGTTCAC 60.006 57.895 15.13 1.90 0.00 3.18
2365 2428 1.005748 CACAGCAGGCTCGAGTTCA 60.006 57.895 15.13 0.00 0.00 3.18
2371 2434 0.461516 ATCATCACACAGCAGGCTCG 60.462 55.000 0.00 0.00 0.00 5.03
2380 2443 5.363562 AGATAAGCCAGAATCATCACACA 57.636 39.130 0.00 0.00 0.00 3.72
2381 2444 7.976135 ATTAGATAAGCCAGAATCATCACAC 57.024 36.000 0.00 0.00 0.00 3.82
2420 2483 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2422 2485 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2424 2487 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2426 2489 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2428 2491 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2429 2492 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2430 2493 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2431 2494 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2432 2495 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2433 2496 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
2434 2497 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2435 2498 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2436 2499 2.287308 ACACAAACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2437 2500 1.950216 ACACAAACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2438 2501 2.287308 ACACACAAACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2439 2502 1.950216 ACACACAAACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2440 2503 2.287308 ACACACACAAACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2441 2504 1.950216 ACACACACAAACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2442 2505 2.287308 ACACACACACAAACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2443 2506 1.950216 ACACACACACAAACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2444 2507 2.287308 ACACACACACACAAACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2445 2508 1.950216 ACACACACACACAAACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2446 2509 2.287308 ACACACACACACACAAACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2447 2510 1.950216 ACACACACACACACAAACACA 59.050 42.857 0.00 0.00 0.00 3.72
2448 2511 2.287308 ACACACACACACACACAAACAC 60.287 45.455 0.00 0.00 0.00 3.32
2449 2512 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
2450 2513 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
2451 2514 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2452 2515 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2453 2516 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2454 2517 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2455 2518 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2456 2519 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2457 2520 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2458 2521 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2459 2522 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2460 2523 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2461 2524 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2462 2525 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2510 2575 9.545105 AAGCATTATCACAAATTTTGTTCTTGA 57.455 25.926 12.02 7.24 43.23 3.02
2511 2576 9.588774 CAAGCATTATCACAAATTTTGTTCTTG 57.411 29.630 12.02 11.63 43.23 3.02
2605 2684 3.484407 GCAGCATAAGATCCACTGGAAT 58.516 45.455 0.66 0.00 34.34 3.01
2615 2694 9.610705 CAACATATATTCTAGGCAGCATAAGAT 57.389 33.333 0.00 0.00 0.00 2.40
2693 2772 7.435192 GCTATTTTTAGTGTGAACTTTTGTGCT 59.565 33.333 0.00 0.00 0.00 4.40
2730 2918 3.181493 CCATCATTGCAGCCAACTAAGAC 60.181 47.826 0.00 0.00 32.95 3.01
2735 2923 1.636148 AACCATCATTGCAGCCAACT 58.364 45.000 0.00 0.00 32.95 3.16
2814 3002 7.315142 TCTTAAAAATGATACCAAAGCTGCTG 58.685 34.615 1.35 0.00 0.00 4.41
2887 3076 1.606668 TCAAGCCGGACAACAAACATC 59.393 47.619 5.05 0.00 0.00 3.06
3066 3297 4.654262 TGGTCTCAGGTTAACAAGAAGACT 59.346 41.667 19.90 2.37 0.00 3.24
3144 3378 5.858381 TCATCCTGTTACATCCTATCAAGC 58.142 41.667 0.00 0.00 0.00 4.01
4238 4746 8.254508 AGAAAAGGTGTAAAAATTACAAGTGCA 58.745 29.630 4.64 0.00 0.00 4.57
4254 4762 2.173569 ACAAGCAGAGGAGAAAAGGTGT 59.826 45.455 0.00 0.00 0.00 4.16
4301 4809 4.530710 GATGCATATCCAACAATGCCAT 57.469 40.909 0.00 0.00 46.34 4.40
4356 4890 7.857456 TGCAATACTCCCTCTGTTTATAAGAA 58.143 34.615 0.00 0.00 0.00 2.52
4362 4902 5.499004 ACTTGCAATACTCCCTCTGTTTA 57.501 39.130 0.00 0.00 0.00 2.01
4407 4947 4.794169 ACTGTGCATTACAAAATTCCGAC 58.206 39.130 0.00 0.00 39.20 4.79
4409 4949 6.420604 AGAAAACTGTGCATTACAAAATTCCG 59.579 34.615 0.00 0.00 39.20 4.30
4418 4966 7.308435 AGATAGCAAAGAAAACTGTGCATTAC 58.692 34.615 13.64 3.93 39.50 1.89
4453 5001 9.459276 CGTTTCATTTCCAAAATAAATAAAGCG 57.541 29.630 0.00 0.00 0.00 4.68
4479 5027 4.187694 TCAACCAAATCAAACAAAGCCAC 58.812 39.130 0.00 0.00 0.00 5.01
4482 5030 6.784176 ACAATTCAACCAAATCAAACAAAGC 58.216 32.000 0.00 0.00 0.00 3.51
4641 5189 6.945435 ACATCACACAATAACCAACAAGGATA 59.055 34.615 0.00 0.00 41.22 2.59
4655 5203 2.071540 CGACTGCTGACATCACACAAT 58.928 47.619 0.00 0.00 0.00 2.71
4660 5208 0.945743 TGTGCGACTGCTGACATCAC 60.946 55.000 0.00 3.43 43.34 3.06
4678 5226 9.926751 CTAGCTTTGTTGTGTGAATATATTCTG 57.073 33.333 22.77 5.24 37.67 3.02
4795 5345 4.631813 AGGAAGATTACATCAGAACAACGC 59.368 41.667 0.00 0.00 0.00 4.84
4847 5397 3.942748 GGCCACCATGTTTTTCGTAGATA 59.057 43.478 0.00 0.00 35.04 1.98
4919 5469 2.092323 GGGCATTTCTTCACCTGGTAC 58.908 52.381 0.00 0.00 0.00 3.34
5038 5588 0.537143 TGTGCTTCGCTTTGGTCCAT 60.537 50.000 0.00 0.00 0.00 3.41
5073 5623 0.859232 CAGTATTCATGTACGGCCGC 59.141 55.000 28.58 11.02 0.00 6.53
5297 5847 0.540923 AGATCCTCTCACTGCTTGGC 59.459 55.000 0.00 0.00 0.00 4.52
5312 5862 6.032094 CACAAACATGGTCATAGCAAAGATC 58.968 40.000 0.00 0.00 0.00 2.75
5313 5863 5.105635 CCACAAACATGGTCATAGCAAAGAT 60.106 40.000 0.00 0.00 34.77 2.40
5315 5865 4.218200 TCCACAAACATGGTCATAGCAAAG 59.782 41.667 0.00 0.00 40.95 2.77
5317 5867 3.758023 CTCCACAAACATGGTCATAGCAA 59.242 43.478 0.00 0.00 40.95 3.91
5318 5868 3.008923 TCTCCACAAACATGGTCATAGCA 59.991 43.478 0.00 0.00 40.95 3.49
5319 5869 3.609853 TCTCCACAAACATGGTCATAGC 58.390 45.455 0.00 0.00 40.95 2.97
5320 5870 5.124457 CCTTTCTCCACAAACATGGTCATAG 59.876 44.000 0.00 0.00 40.95 2.23
5321 5871 5.009631 CCTTTCTCCACAAACATGGTCATA 58.990 41.667 0.00 0.00 40.95 2.15
5322 5872 3.828451 CCTTTCTCCACAAACATGGTCAT 59.172 43.478 0.00 0.00 40.95 3.06
5324 5874 2.558359 CCCTTTCTCCACAAACATGGTC 59.442 50.000 0.00 0.00 40.95 4.02
5425 5998 7.499895 AGTGTATTCTACAGTCCTCTTAGTAGC 59.500 40.741 0.00 0.00 37.83 3.58
5426 5999 8.967664 AGTGTATTCTACAGTCCTCTTAGTAG 57.032 38.462 0.00 0.00 37.83 2.57
5435 6008 5.642491 GGTTCCAAAGTGTATTCTACAGTCC 59.358 44.000 0.00 0.00 41.27 3.85
5436 6009 6.465084 AGGTTCCAAAGTGTATTCTACAGTC 58.535 40.000 0.00 0.00 41.27 3.51
5537 6110 8.886719 TGATAGAAATCACTAATGTTGCAAGAG 58.113 33.333 0.00 0.00 37.20 2.85
5551 6124 3.135530 AGTCCCAGGCTGATAGAAATCAC 59.864 47.826 17.94 0.00 37.20 3.06
5586 6159 6.491383 ACATAACCCACTCTGACTAGTCTAA 58.509 40.000 23.01 10.46 0.00 2.10
5587 6160 6.075949 ACATAACCCACTCTGACTAGTCTA 57.924 41.667 23.01 10.80 0.00 2.59
5588 6161 4.936802 ACATAACCCACTCTGACTAGTCT 58.063 43.478 23.01 0.19 0.00 3.24
5589 6162 5.662674 AACATAACCCACTCTGACTAGTC 57.337 43.478 16.32 16.32 0.00 2.59
5590 6163 6.349944 CGTAAACATAACCCACTCTGACTAGT 60.350 42.308 0.00 0.00 0.00 2.57
5591 6164 6.034591 CGTAAACATAACCCACTCTGACTAG 58.965 44.000 0.00 0.00 0.00 2.57
5592 6165 5.105635 CCGTAAACATAACCCACTCTGACTA 60.106 44.000 0.00 0.00 0.00 2.59
5593 6166 4.322499 CCGTAAACATAACCCACTCTGACT 60.322 45.833 0.00 0.00 0.00 3.41
5594 6167 3.930848 CCGTAAACATAACCCACTCTGAC 59.069 47.826 0.00 0.00 0.00 3.51
5595 6168 3.055675 CCCGTAAACATAACCCACTCTGA 60.056 47.826 0.00 0.00 0.00 3.27
5596 6169 3.267483 CCCGTAAACATAACCCACTCTG 58.733 50.000 0.00 0.00 0.00 3.35
5597 6170 2.237893 CCCCGTAAACATAACCCACTCT 59.762 50.000 0.00 0.00 0.00 3.24
5598 6171 2.236893 TCCCCGTAAACATAACCCACTC 59.763 50.000 0.00 0.00 0.00 3.51
5599 6172 2.237893 CTCCCCGTAAACATAACCCACT 59.762 50.000 0.00 0.00 0.00 4.00
5600 6173 2.026915 ACTCCCCGTAAACATAACCCAC 60.027 50.000 0.00 0.00 0.00 4.61
5601 6174 2.268107 ACTCCCCGTAAACATAACCCA 58.732 47.619 0.00 0.00 0.00 4.51
5602 6175 4.191544 GTTACTCCCCGTAAACATAACCC 58.808 47.826 0.00 0.00 39.65 4.11
5603 6176 4.831107 TGTTACTCCCCGTAAACATAACC 58.169 43.478 0.00 0.00 39.65 2.85
5604 6177 5.876460 ACATGTTACTCCCCGTAAACATAAC 59.124 40.000 0.00 0.00 39.65 1.89
5605 6178 5.875910 CACATGTTACTCCCCGTAAACATAA 59.124 40.000 0.00 0.00 39.65 1.90
5606 6179 5.046448 ACACATGTTACTCCCCGTAAACATA 60.046 40.000 0.00 0.00 39.65 2.29
5607 6180 4.258543 CACATGTTACTCCCCGTAAACAT 58.741 43.478 0.00 0.00 39.65 2.71
5608 6181 3.071312 ACACATGTTACTCCCCGTAAACA 59.929 43.478 0.00 0.00 39.65 2.83
5609 6182 3.434299 CACACATGTTACTCCCCGTAAAC 59.566 47.826 0.00 0.00 39.65 2.01
5610 6183 3.557475 CCACACATGTTACTCCCCGTAAA 60.557 47.826 0.00 0.00 39.65 2.01
5611 6184 2.027929 CCACACATGTTACTCCCCGTAA 60.028 50.000 0.00 0.00 35.78 3.18
5612 6185 1.551430 CCACACATGTTACTCCCCGTA 59.449 52.381 0.00 0.00 0.00 4.02
5613 6186 0.323629 CCACACATGTTACTCCCCGT 59.676 55.000 0.00 0.00 0.00 5.28
5614 6187 0.323629 ACCACACATGTTACTCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
5615 6188 1.073284 ACACCACACATGTTACTCCCC 59.927 52.381 0.00 0.00 0.00 4.81
5616 6189 2.224426 TGACACCACACATGTTACTCCC 60.224 50.000 0.00 0.00 0.00 4.30
5617 6190 3.120321 TGACACCACACATGTTACTCC 57.880 47.619 0.00 0.00 0.00 3.85
5618 6191 3.120199 GCATGACACCACACATGTTACTC 60.120 47.826 0.00 0.00 43.67 2.59
5619 6192 2.813754 GCATGACACCACACATGTTACT 59.186 45.455 0.00 0.00 43.67 2.24
5620 6193 2.551887 TGCATGACACCACACATGTTAC 59.448 45.455 0.00 0.00 43.67 2.50
5621 6194 2.856222 TGCATGACACCACACATGTTA 58.144 42.857 0.00 0.00 43.67 2.41
5622 6195 1.689984 TGCATGACACCACACATGTT 58.310 45.000 0.00 0.00 43.67 2.71
5623 6196 1.337703 GTTGCATGACACCACACATGT 59.662 47.619 0.00 0.00 43.67 3.21
5624 6197 1.337387 TGTTGCATGACACCACACATG 59.663 47.619 0.00 0.00 44.32 3.21
5625 6198 1.337703 GTGTTGCATGACACCACACAT 59.662 47.619 10.05 0.00 41.13 3.21
5626 6199 0.737804 GTGTTGCATGACACCACACA 59.262 50.000 10.05 0.00 41.13 3.72
5627 6200 3.549997 GTGTTGCATGACACCACAC 57.450 52.632 10.05 5.22 41.13 3.82
5633 6206 9.019656 ACCTAATAAATTTAGTGTTGCATGACA 57.980 29.630 8.37 0.00 0.00 3.58
5634 6207 9.855021 AACCTAATAAATTTAGTGTTGCATGAC 57.145 29.630 8.37 0.00 0.00 3.06
5635 6208 9.853555 CAACCTAATAAATTTAGTGTTGCATGA 57.146 29.630 12.82 0.00 32.28 3.07
5636 6209 9.638239 ACAACCTAATAAATTTAGTGTTGCATG 57.362 29.630 20.09 10.38 37.06 4.06
5654 6227 9.802039 ACCAGAACAAATAAATCTACAACCTAA 57.198 29.630 0.00 0.00 0.00 2.69
5656 6229 9.975218 ATACCAGAACAAATAAATCTACAACCT 57.025 29.630 0.00 0.00 0.00 3.50
5666 6239 9.693739 ACCATCACATATACCAGAACAAATAAA 57.306 29.630 0.00 0.00 0.00 1.40
5668 6241 9.996554 CTACCATCACATATACCAGAACAAATA 57.003 33.333 0.00 0.00 0.00 1.40
5669 6242 8.713971 TCTACCATCACATATACCAGAACAAAT 58.286 33.333 0.00 0.00 0.00 2.32
5670 6243 8.084985 TCTACCATCACATATACCAGAACAAA 57.915 34.615 0.00 0.00 0.00 2.83
5671 6244 7.344612 ACTCTACCATCACATATACCAGAACAA 59.655 37.037 0.00 0.00 0.00 2.83
5672 6245 6.839134 ACTCTACCATCACATATACCAGAACA 59.161 38.462 0.00 0.00 0.00 3.18
5673 6246 7.291411 ACTCTACCATCACATATACCAGAAC 57.709 40.000 0.00 0.00 0.00 3.01
5674 6247 8.857098 GTTACTCTACCATCACATATACCAGAA 58.143 37.037 0.00 0.00 0.00 3.02
5675 6248 8.225416 AGTTACTCTACCATCACATATACCAGA 58.775 37.037 0.00 0.00 0.00 3.86
5676 6249 8.410673 AGTTACTCTACCATCACATATACCAG 57.589 38.462 0.00 0.00 0.00 4.00
5684 6257 9.416284 TGATAACATAGTTACTCTACCATCACA 57.584 33.333 0.00 0.00 0.00 3.58
5702 6275 9.842775 TGAGAAAAGAGAAGCATATGATAACAT 57.157 29.630 6.97 0.00 40.16 2.71
5703 6276 9.842775 ATGAGAAAAGAGAAGCATATGATAACA 57.157 29.630 6.97 0.00 0.00 2.41
5713 6286 9.950496 AGAGTAATTAATGAGAAAAGAGAAGCA 57.050 29.630 0.00 0.00 0.00 3.91
5731 6304 8.025445 GCAAAACAGATGATGTGAAGAGTAATT 58.975 33.333 0.00 0.00 43.00 1.40
5732 6305 7.533426 GCAAAACAGATGATGTGAAGAGTAAT 58.467 34.615 0.00 0.00 43.00 1.89
5733 6306 6.347644 CGCAAAACAGATGATGTGAAGAGTAA 60.348 38.462 0.00 0.00 43.00 2.24
5734 6307 5.120674 CGCAAAACAGATGATGTGAAGAGTA 59.879 40.000 0.00 0.00 43.00 2.59
5735 6308 4.083643 CGCAAAACAGATGATGTGAAGAGT 60.084 41.667 0.00 0.00 43.00 3.24
5736 6309 4.152938 TCGCAAAACAGATGATGTGAAGAG 59.847 41.667 0.00 0.00 43.00 2.85
5737 6310 4.064388 TCGCAAAACAGATGATGTGAAGA 58.936 39.130 0.00 0.00 43.00 2.87
5738 6311 4.408993 TCGCAAAACAGATGATGTGAAG 57.591 40.909 0.00 0.00 43.00 3.02
5739 6312 4.514816 TCTTCGCAAAACAGATGATGTGAA 59.485 37.500 0.00 0.00 43.00 3.18
5740 6313 4.064388 TCTTCGCAAAACAGATGATGTGA 58.936 39.130 0.00 0.00 43.00 3.58
5741 6314 4.400845 CTCTTCGCAAAACAGATGATGTG 58.599 43.478 0.00 0.00 43.00 3.21
5742 6315 3.438087 CCTCTTCGCAAAACAGATGATGT 59.562 43.478 0.00 0.00 46.97 3.06
5743 6316 3.438087 ACCTCTTCGCAAAACAGATGATG 59.562 43.478 0.00 0.00 0.00 3.07
5744 6317 3.438087 CACCTCTTCGCAAAACAGATGAT 59.562 43.478 0.00 0.00 0.00 2.45
5745 6318 2.807967 CACCTCTTCGCAAAACAGATGA 59.192 45.455 0.00 0.00 0.00 2.92
5746 6319 2.549754 ACACCTCTTCGCAAAACAGATG 59.450 45.455 0.00 0.00 0.00 2.90
5747 6320 2.549754 CACACCTCTTCGCAAAACAGAT 59.450 45.455 0.00 0.00 0.00 2.90
5748 6321 1.939934 CACACCTCTTCGCAAAACAGA 59.060 47.619 0.00 0.00 0.00 3.41
5749 6322 1.670811 ACACACCTCTTCGCAAAACAG 59.329 47.619 0.00 0.00 0.00 3.16
5750 6323 1.400142 CACACACCTCTTCGCAAAACA 59.600 47.619 0.00 0.00 0.00 2.83
5751 6324 1.668751 TCACACACCTCTTCGCAAAAC 59.331 47.619 0.00 0.00 0.00 2.43
5752 6325 2.031258 TCACACACCTCTTCGCAAAA 57.969 45.000 0.00 0.00 0.00 2.44
5753 6326 2.254546 ATCACACACCTCTTCGCAAA 57.745 45.000 0.00 0.00 0.00 3.68
5754 6327 2.254546 AATCACACACCTCTTCGCAA 57.745 45.000 0.00 0.00 0.00 4.85
5755 6328 2.254546 AAATCACACACCTCTTCGCA 57.745 45.000 0.00 0.00 0.00 5.10
5756 6329 3.424962 GCTAAAATCACACACCTCTTCGC 60.425 47.826 0.00 0.00 0.00 4.70
5757 6330 3.745975 TGCTAAAATCACACACCTCTTCG 59.254 43.478 0.00 0.00 0.00 3.79
5758 6331 5.645497 AGATGCTAAAATCACACACCTCTTC 59.355 40.000 0.00 0.00 0.00 2.87
5759 6332 5.564550 AGATGCTAAAATCACACACCTCTT 58.435 37.500 0.00 0.00 0.00 2.85
5760 6333 5.171339 AGATGCTAAAATCACACACCTCT 57.829 39.130 0.00 0.00 0.00 3.69
5761 6334 8.839310 ATATAGATGCTAAAATCACACACCTC 57.161 34.615 0.00 0.00 0.00 3.85
5775 6348 9.682465 CCTACAGTGGTAGTAATATAGATGCTA 57.318 37.037 0.00 0.00 44.54 3.49
5776 6349 8.171400 ACCTACAGTGGTAGTAATATAGATGCT 58.829 37.037 0.00 0.00 44.54 3.79
5777 6350 8.350852 ACCTACAGTGGTAGTAATATAGATGC 57.649 38.462 0.00 0.00 44.54 3.91
5790 6363 5.776716 AGTGCTAAAACTACCTACAGTGGTA 59.223 40.000 0.00 0.00 39.66 3.25
5791 6364 4.591924 AGTGCTAAAACTACCTACAGTGGT 59.408 41.667 0.00 0.00 42.95 4.16
5792 6365 5.148651 AGTGCTAAAACTACCTACAGTGG 57.851 43.478 0.00 0.00 0.00 4.00
5793 6366 8.597662 TTTTAGTGCTAAAACTACCTACAGTG 57.402 34.615 11.71 0.00 39.34 3.66
5805 6378 7.177568 TCCATTATGCTGGTTTTAGTGCTAAAA 59.822 33.333 11.71 11.71 37.55 1.52
5806 6379 6.661377 TCCATTATGCTGGTTTTAGTGCTAAA 59.339 34.615 0.68 0.68 37.57 1.85
5878 6451 3.254657 CCACGTGGTGTTCACCAATTTAT 59.745 43.478 26.95 7.37 43.23 1.40
5879 6452 2.619177 CCACGTGGTGTTCACCAATTTA 59.381 45.455 26.95 0.86 43.23 1.40
5883 6456 0.035343 TTCCACGTGGTGTTCACCAA 60.035 50.000 32.74 15.22 43.23 3.67
5888 6461 3.982576 AATCTTTTCCACGTGGTGTTC 57.017 42.857 32.74 0.00 36.34 3.18
6077 6652 7.231722 ACAATCTCCGAAGCACTATAAGTCTAT 59.768 37.037 0.00 0.00 0.00 1.98
6078 6653 6.546403 ACAATCTCCGAAGCACTATAAGTCTA 59.454 38.462 0.00 0.00 0.00 2.59
6079 6654 5.361285 ACAATCTCCGAAGCACTATAAGTCT 59.639 40.000 0.00 0.00 0.00 3.24
6080 6655 5.460419 CACAATCTCCGAAGCACTATAAGTC 59.540 44.000 0.00 0.00 0.00 3.01
6081 6656 5.352284 CACAATCTCCGAAGCACTATAAGT 58.648 41.667 0.00 0.00 0.00 2.24
6082 6657 4.747108 CCACAATCTCCGAAGCACTATAAG 59.253 45.833 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.