Multiple sequence alignment - TraesCS7B01G201100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G201100 chr7B 100.000 1049 0 0 924 1972 367014840 367013792 0.000000e+00 1938
1 TraesCS7B01G201100 chr7B 100.000 557 0 0 1 557 367015763 367015207 0.000000e+00 1029
2 TraesCS7B01G201100 chr7B 84.048 840 117 13 931 1758 339207881 339207047 0.000000e+00 793
3 TraesCS7B01G201100 chr7B 100.000 146 0 0 2224 2369 367013540 367013395 1.080000e-68 270
4 TraesCS7B01G201100 chr5B 87.345 1051 109 9 931 1972 447128076 447127041 0.000000e+00 1182
5 TraesCS7B01G201100 chr5B 76.596 423 90 8 1001 1419 525808101 525807684 8.520000e-55 224
6 TraesCS7B01G201100 chr5B 91.724 145 11 1 2226 2369 447127001 447126857 1.440000e-47 200
7 TraesCS7B01G201100 chr5D 83.920 1051 153 11 930 1970 266747847 266746803 0.000000e+00 990
8 TraesCS7B01G201100 chr2B 82.795 1052 163 16 930 1971 755323487 755322444 0.000000e+00 924
9 TraesCS7B01G201100 chr7A 82.660 1015 160 12 971 1972 335993481 335994492 0.000000e+00 885
10 TraesCS7B01G201100 chr7A 94.954 436 13 8 3 432 416423780 416423348 0.000000e+00 675
11 TraesCS7B01G201100 chr1A 80.819 1001 176 14 971 1962 58956014 58957007 0.000000e+00 771
12 TraesCS7B01G201100 chr3B 79.482 1043 198 14 930 1962 700807302 700806266 0.000000e+00 726
13 TraesCS7B01G201100 chr7D 94.952 416 11 5 1 414 371788155 371787748 0.000000e+00 643
14 TraesCS7B01G201100 chr1B 80.683 761 131 13 1031 1781 5869568 5868814 5.680000e-161 577
15 TraesCS7B01G201100 chr1B 76.659 437 93 8 1538 1971 343923277 343923707 1.420000e-57 233
16 TraesCS7B01G201100 chr3A 76.054 735 155 17 1053 1775 487430174 487429449 1.730000e-96 363


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G201100 chr7B 367013395 367015763 2368 True 1079 1938 100.0000 1 2369 3 chr7B.!!$R2 2368
1 TraesCS7B01G201100 chr7B 339207047 339207881 834 True 793 793 84.0480 931 1758 1 chr7B.!!$R1 827
2 TraesCS7B01G201100 chr5B 447126857 447128076 1219 True 691 1182 89.5345 931 2369 2 chr5B.!!$R2 1438
3 TraesCS7B01G201100 chr5D 266746803 266747847 1044 True 990 990 83.9200 930 1970 1 chr5D.!!$R1 1040
4 TraesCS7B01G201100 chr2B 755322444 755323487 1043 True 924 924 82.7950 930 1971 1 chr2B.!!$R1 1041
5 TraesCS7B01G201100 chr7A 335993481 335994492 1011 False 885 885 82.6600 971 1972 1 chr7A.!!$F1 1001
6 TraesCS7B01G201100 chr1A 58956014 58957007 993 False 771 771 80.8190 971 1962 1 chr1A.!!$F1 991
7 TraesCS7B01G201100 chr3B 700806266 700807302 1036 True 726 726 79.4820 930 1962 1 chr3B.!!$R1 1032
8 TraesCS7B01G201100 chr1B 5868814 5869568 754 True 577 577 80.6830 1031 1781 1 chr1B.!!$R1 750
9 TraesCS7B01G201100 chr3A 487429449 487430174 725 True 363 363 76.0540 1053 1775 1 chr3A.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 547 0.033991 TCAGTCTTCCTCCTCCTCCG 60.034 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2260 0.250513 GTCTGCTGGGTAGTCTTGGG 59.749 60.0 0.0 0.0 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.042843 GGCCGGAGAAGAGGGAGA 60.043 66.667 5.05 0.00 0.00 3.71
18 19 2.428085 GGCCGGAGAAGAGGGAGAC 61.428 68.421 5.05 0.00 0.00 3.36
19 20 2.776913 GCCGGAGAAGAGGGAGACG 61.777 68.421 5.05 0.00 0.00 4.18
20 21 1.077644 CCGGAGAAGAGGGAGACGA 60.078 63.158 0.00 0.00 0.00 4.20
21 22 1.098712 CCGGAGAAGAGGGAGACGAG 61.099 65.000 0.00 0.00 0.00 4.18
22 23 0.107606 CGGAGAAGAGGGAGACGAGA 60.108 60.000 0.00 0.00 0.00 4.04
23 24 1.675552 GGAGAAGAGGGAGACGAGAG 58.324 60.000 0.00 0.00 0.00 3.20
24 25 1.021968 GAGAAGAGGGAGACGAGAGC 58.978 60.000 0.00 0.00 0.00 4.09
25 26 0.746563 AGAAGAGGGAGACGAGAGCG 60.747 60.000 0.00 0.00 44.79 5.03
26 27 2.331019 GAAGAGGGAGACGAGAGCGC 62.331 65.000 0.00 0.00 42.48 5.92
27 28 4.244802 GAGGGAGACGAGAGCGCG 62.245 72.222 0.00 0.00 42.48 6.86
36 37 4.796231 GAGAGCGCGGCGAGGAAA 62.796 66.667 28.54 0.00 0.00 3.13
37 38 4.148825 AGAGCGCGGCGAGGAAAT 62.149 61.111 28.54 3.36 0.00 2.17
38 39 3.195698 GAGCGCGGCGAGGAAATT 61.196 61.111 28.54 1.14 0.00 1.82
39 40 3.440356 GAGCGCGGCGAGGAAATTG 62.440 63.158 28.54 0.00 0.00 2.32
40 41 3.496131 GCGCGGCGAGGAAATTGA 61.496 61.111 28.54 0.00 0.00 2.57
41 42 2.703409 CGCGGCGAGGAAATTGAG 59.297 61.111 19.16 0.00 0.00 3.02
42 43 2.405191 GCGGCGAGGAAATTGAGC 59.595 61.111 12.98 0.00 0.00 4.26
43 44 2.398554 GCGGCGAGGAAATTGAGCA 61.399 57.895 12.98 0.00 0.00 4.26
44 45 1.425428 CGGCGAGGAAATTGAGCAC 59.575 57.895 0.00 0.00 0.00 4.40
45 46 1.803289 GGCGAGGAAATTGAGCACC 59.197 57.895 0.00 0.00 0.00 5.01
46 47 1.425428 GCGAGGAAATTGAGCACCG 59.575 57.895 0.00 0.00 0.00 4.94
47 48 1.425428 CGAGGAAATTGAGCACCGC 59.575 57.895 0.00 0.00 0.00 5.68
48 49 1.803289 GAGGAAATTGAGCACCGCC 59.197 57.895 0.00 0.00 0.00 6.13
49 50 0.960364 GAGGAAATTGAGCACCGCCA 60.960 55.000 0.00 0.00 0.00 5.69
50 51 1.212751 GGAAATTGAGCACCGCCAC 59.787 57.895 0.00 0.00 0.00 5.01
51 52 1.212751 GAAATTGAGCACCGCCACC 59.787 57.895 0.00 0.00 0.00 4.61
52 53 1.228552 AAATTGAGCACCGCCACCT 60.229 52.632 0.00 0.00 0.00 4.00
53 54 1.244019 AAATTGAGCACCGCCACCTC 61.244 55.000 0.00 0.00 0.00 3.85
54 55 3.958147 ATTGAGCACCGCCACCTCG 62.958 63.158 0.00 0.00 0.00 4.63
56 57 4.148825 GAGCACCGCCACCTCGAT 62.149 66.667 0.00 0.00 0.00 3.59
57 58 4.148825 AGCACCGCCACCTCGATC 62.149 66.667 0.00 0.00 0.00 3.69
59 60 3.461773 CACCGCCACCTCGATCCT 61.462 66.667 0.00 0.00 0.00 3.24
60 61 2.683933 ACCGCCACCTCGATCCTT 60.684 61.111 0.00 0.00 0.00 3.36
61 62 2.202932 CCGCCACCTCGATCCTTG 60.203 66.667 0.00 0.00 0.00 3.61
62 63 2.892425 CGCCACCTCGATCCTTGC 60.892 66.667 0.00 0.00 0.00 4.01
63 64 2.514824 GCCACCTCGATCCTTGCC 60.515 66.667 0.00 0.00 0.00 4.52
64 65 2.190578 CCACCTCGATCCTTGCCC 59.809 66.667 0.00 0.00 0.00 5.36
65 66 2.202932 CACCTCGATCCTTGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
66 67 2.363795 ACCTCGATCCTTGCCCGA 60.364 61.111 0.00 0.00 0.00 5.14
67 68 1.987855 ACCTCGATCCTTGCCCGAA 60.988 57.895 0.00 0.00 31.59 4.30
68 69 1.521681 CCTCGATCCTTGCCCGAAC 60.522 63.158 0.00 0.00 31.59 3.95
69 70 1.521681 CTCGATCCTTGCCCGAACC 60.522 63.158 0.00 0.00 31.59 3.62
70 71 1.961180 CTCGATCCTTGCCCGAACCT 61.961 60.000 0.00 0.00 31.59 3.50
71 72 0.685131 TCGATCCTTGCCCGAACCTA 60.685 55.000 0.00 0.00 0.00 3.08
72 73 0.393077 CGATCCTTGCCCGAACCTAT 59.607 55.000 0.00 0.00 0.00 2.57
73 74 1.605712 CGATCCTTGCCCGAACCTATC 60.606 57.143 0.00 0.00 0.00 2.08
91 92 2.462456 TCGAGAGAAGCAAAGCATGT 57.538 45.000 0.00 0.00 37.03 3.21
92 93 2.341257 TCGAGAGAAGCAAAGCATGTC 58.659 47.619 0.00 0.00 37.03 3.06
93 94 1.060266 CGAGAGAAGCAAAGCATGTCG 59.940 52.381 0.00 0.00 0.00 4.35
94 95 2.341257 GAGAGAAGCAAAGCATGTCGA 58.659 47.619 0.00 0.00 0.00 4.20
95 96 2.935201 GAGAGAAGCAAAGCATGTCGAT 59.065 45.455 0.00 0.00 0.00 3.59
96 97 3.341823 AGAGAAGCAAAGCATGTCGATT 58.658 40.909 0.00 0.00 0.00 3.34
97 98 3.373439 AGAGAAGCAAAGCATGTCGATTC 59.627 43.478 0.00 0.00 0.00 2.52
98 99 2.094894 AGAAGCAAAGCATGTCGATTCG 59.905 45.455 0.00 0.00 0.00 3.34
99 100 1.725641 AGCAAAGCATGTCGATTCGA 58.274 45.000 4.29 4.29 0.00 3.71
100 101 2.283298 AGCAAAGCATGTCGATTCGAT 58.717 42.857 12.54 0.00 38.42 3.59
101 102 2.286294 AGCAAAGCATGTCGATTCGATC 59.714 45.455 12.54 6.84 38.42 3.69
102 103 2.030823 GCAAAGCATGTCGATTCGATCA 59.969 45.455 12.54 12.05 38.42 2.92
103 104 3.843868 GCAAAGCATGTCGATTCGATCAG 60.844 47.826 12.54 6.18 38.42 2.90
104 105 3.443099 AAGCATGTCGATTCGATCAGA 57.557 42.857 12.54 0.00 38.42 3.27
105 106 3.010624 AGCATGTCGATTCGATCAGAG 57.989 47.619 12.54 9.73 38.42 3.35
106 107 2.057316 GCATGTCGATTCGATCAGAGG 58.943 52.381 12.54 7.43 38.42 3.69
107 108 2.057316 CATGTCGATTCGATCAGAGGC 58.943 52.381 12.54 0.00 38.42 4.70
108 109 1.102978 TGTCGATTCGATCAGAGGCA 58.897 50.000 12.54 0.61 38.42 4.75
109 110 1.066152 TGTCGATTCGATCAGAGGCAG 59.934 52.381 12.54 0.00 38.42 4.85
110 111 0.670706 TCGATTCGATCAGAGGCAGG 59.329 55.000 4.29 0.00 0.00 4.85
111 112 0.319383 CGATTCGATCAGAGGCAGGG 60.319 60.000 0.00 0.00 0.00 4.45
112 113 0.034616 GATTCGATCAGAGGCAGGGG 59.965 60.000 0.00 0.00 0.00 4.79
113 114 2.049627 ATTCGATCAGAGGCAGGGGC 62.050 60.000 0.00 0.00 40.13 5.80
114 115 4.598894 CGATCAGAGGCAGGGGCG 62.599 72.222 0.00 0.00 42.47 6.13
115 116 4.247380 GATCAGAGGCAGGGGCGG 62.247 72.222 0.00 0.00 42.47 6.13
116 117 4.804420 ATCAGAGGCAGGGGCGGA 62.804 66.667 0.00 0.00 42.47 5.54
127 128 3.703127 GGGCGGACGAGGGAAGTT 61.703 66.667 0.00 0.00 0.00 2.66
128 129 2.434359 GGCGGACGAGGGAAGTTG 60.434 66.667 0.00 0.00 0.00 3.16
129 130 2.434359 GCGGACGAGGGAAGTTGG 60.434 66.667 0.00 0.00 0.00 3.77
130 131 2.264794 CGGACGAGGGAAGTTGGG 59.735 66.667 0.00 0.00 0.00 4.12
131 132 2.669240 GGACGAGGGAAGTTGGGG 59.331 66.667 0.00 0.00 0.00 4.96
132 133 2.046217 GACGAGGGAAGTTGGGGC 60.046 66.667 0.00 0.00 0.00 5.80
133 134 2.852075 ACGAGGGAAGTTGGGGCA 60.852 61.111 0.00 0.00 0.00 5.36
134 135 2.198304 GACGAGGGAAGTTGGGGCAT 62.198 60.000 0.00 0.00 0.00 4.40
135 136 1.750399 CGAGGGAAGTTGGGGCATG 60.750 63.158 0.00 0.00 0.00 4.06
136 137 1.691219 GAGGGAAGTTGGGGCATGA 59.309 57.895 0.00 0.00 0.00 3.07
137 138 0.394899 GAGGGAAGTTGGGGCATGAG 60.395 60.000 0.00 0.00 0.00 2.90
138 139 1.142688 AGGGAAGTTGGGGCATGAGT 61.143 55.000 0.00 0.00 0.00 3.41
139 140 0.967380 GGGAAGTTGGGGCATGAGTG 60.967 60.000 0.00 0.00 0.00 3.51
140 141 0.967380 GGAAGTTGGGGCATGAGTGG 60.967 60.000 0.00 0.00 0.00 4.00
141 142 0.038166 GAAGTTGGGGCATGAGTGGA 59.962 55.000 0.00 0.00 0.00 4.02
142 143 0.038744 AAGTTGGGGCATGAGTGGAG 59.961 55.000 0.00 0.00 0.00 3.86
143 144 1.136329 AGTTGGGGCATGAGTGGAGT 61.136 55.000 0.00 0.00 0.00 3.85
144 145 0.962356 GTTGGGGCATGAGTGGAGTG 60.962 60.000 0.00 0.00 0.00 3.51
145 146 1.133181 TTGGGGCATGAGTGGAGTGA 61.133 55.000 0.00 0.00 0.00 3.41
146 147 1.078143 GGGGCATGAGTGGAGTGAC 60.078 63.158 0.00 0.00 0.00 3.67
147 148 1.448540 GGGCATGAGTGGAGTGACG 60.449 63.158 0.00 0.00 0.00 4.35
148 149 1.293498 GGCATGAGTGGAGTGACGT 59.707 57.895 0.00 0.00 0.00 4.34
149 150 0.530744 GGCATGAGTGGAGTGACGTA 59.469 55.000 0.00 0.00 0.00 3.57
150 151 1.137086 GGCATGAGTGGAGTGACGTAT 59.863 52.381 0.00 0.00 0.00 3.06
151 152 2.196749 GCATGAGTGGAGTGACGTATG 58.803 52.381 0.00 0.00 0.00 2.39
152 153 2.814269 CATGAGTGGAGTGACGTATGG 58.186 52.381 0.00 0.00 0.00 2.74
153 154 0.530744 TGAGTGGAGTGACGTATGGC 59.469 55.000 0.00 0.00 0.00 4.40
154 155 0.530744 GAGTGGAGTGACGTATGGCA 59.469 55.000 0.00 0.00 0.00 4.92
155 156 0.532573 AGTGGAGTGACGTATGGCAG 59.467 55.000 0.00 0.00 0.00 4.85
156 157 0.530744 GTGGAGTGACGTATGGCAGA 59.469 55.000 0.00 0.00 0.00 4.26
157 158 0.530744 TGGAGTGACGTATGGCAGAC 59.469 55.000 1.27 1.27 0.00 3.51
158 159 0.179108 GGAGTGACGTATGGCAGACC 60.179 60.000 6.69 0.00 0.00 3.85
159 160 0.818296 GAGTGACGTATGGCAGACCT 59.182 55.000 6.69 0.00 36.63 3.85
160 161 0.818296 AGTGACGTATGGCAGACCTC 59.182 55.000 6.69 5.51 36.63 3.85
161 162 0.525668 GTGACGTATGGCAGACCTCG 60.526 60.000 6.69 0.00 36.63 4.63
162 163 1.065928 GACGTATGGCAGACCTCGG 59.934 63.158 6.69 0.00 36.63 4.63
163 164 2.351336 GACGTATGGCAGACCTCGGG 62.351 65.000 6.69 0.00 36.63 5.14
164 165 2.109181 GTATGGCAGACCTCGGGC 59.891 66.667 0.00 0.00 36.63 6.13
165 166 3.536917 TATGGCAGACCTCGGGCG 61.537 66.667 0.00 0.00 39.31 6.13
184 185 4.103103 CGAGAGCACGTCGGCTGA 62.103 66.667 12.11 0.00 45.99 4.26
185 186 2.202544 GAGAGCACGTCGGCTGAG 60.203 66.667 12.11 0.00 45.99 3.35
186 187 4.427661 AGAGCACGTCGGCTGAGC 62.428 66.667 12.11 0.00 45.99 4.26
187 188 4.724602 GAGCACGTCGGCTGAGCA 62.725 66.667 6.82 0.00 45.99 4.26
188 189 4.731612 AGCACGTCGGCTGAGCAG 62.732 66.667 6.82 1.33 43.89 4.24
189 190 4.724602 GCACGTCGGCTGAGCAGA 62.725 66.667 6.82 4.57 0.00 4.26
190 191 2.505777 CACGTCGGCTGAGCAGAG 60.506 66.667 7.71 5.12 32.90 3.35
191 192 3.753434 ACGTCGGCTGAGCAGAGG 61.753 66.667 22.07 22.07 42.34 3.69
218 219 4.443266 GCACCGAAGAGCGAGGCT 62.443 66.667 0.00 0.00 44.57 4.58
219 220 2.507992 CACCGAAGAGCGAGGCTG 60.508 66.667 0.00 0.00 44.57 4.85
220 221 4.443266 ACCGAAGAGCGAGGCTGC 62.443 66.667 0.00 0.00 44.57 5.25
226 227 4.874977 GAGCGAGGCTGCGGGTAC 62.875 72.222 0.00 0.00 39.88 3.34
229 230 4.849329 CGAGGCTGCGGGTACGTC 62.849 72.222 0.00 0.00 43.45 4.34
230 231 4.509737 GAGGCTGCGGGTACGTCC 62.510 72.222 0.00 0.00 43.45 4.79
273 274 4.320456 CACCGCACTGCACCTCCT 62.320 66.667 1.11 0.00 0.00 3.69
274 275 3.560251 ACCGCACTGCACCTCCTT 61.560 61.111 1.11 0.00 0.00 3.36
275 276 2.743928 CCGCACTGCACCTCCTTC 60.744 66.667 1.11 0.00 0.00 3.46
276 277 2.743928 CGCACTGCACCTCCTTCC 60.744 66.667 1.11 0.00 0.00 3.46
277 278 2.753029 GCACTGCACCTCCTTCCT 59.247 61.111 0.00 0.00 0.00 3.36
278 279 1.376553 GCACTGCACCTCCTTCCTC 60.377 63.158 0.00 0.00 0.00 3.71
279 280 2.061220 CACTGCACCTCCTTCCTCA 58.939 57.895 0.00 0.00 0.00 3.86
280 281 0.036577 CACTGCACCTCCTTCCTCAG 60.037 60.000 0.00 0.00 0.00 3.35
281 282 1.197430 ACTGCACCTCCTTCCTCAGG 61.197 60.000 0.00 0.00 45.64 3.86
282 283 1.908340 CTGCACCTCCTTCCTCAGGG 61.908 65.000 0.00 0.00 44.12 4.45
283 284 2.674220 GCACCTCCTTCCTCAGGGG 61.674 68.421 0.00 0.00 44.25 4.79
287 288 3.187313 TCCTTCCTCAGGGGACGA 58.813 61.111 0.00 0.00 45.03 4.20
288 289 1.467886 TCCTTCCTCAGGGGACGAA 59.532 57.895 0.00 0.00 45.03 3.85
289 290 0.178915 TCCTTCCTCAGGGGACGAAA 60.179 55.000 0.00 0.00 45.03 3.46
290 291 0.912486 CCTTCCTCAGGGGACGAAAT 59.088 55.000 0.00 0.00 45.03 2.17
291 292 1.407437 CCTTCCTCAGGGGACGAAATG 60.407 57.143 0.00 0.00 45.03 2.32
292 293 0.618458 TTCCTCAGGGGACGAAATGG 59.382 55.000 0.00 0.00 45.03 3.16
293 294 1.452108 CCTCAGGGGACGAAATGGC 60.452 63.158 0.00 0.00 37.23 4.40
294 295 1.299648 CTCAGGGGACGAAATGGCA 59.700 57.895 0.00 0.00 0.00 4.92
295 296 0.745845 CTCAGGGGACGAAATGGCAG 60.746 60.000 0.00 0.00 0.00 4.85
296 297 2.044946 AGGGGACGAAATGGCAGC 60.045 61.111 0.00 0.00 0.00 5.25
297 298 3.140814 GGGGACGAAATGGCAGCC 61.141 66.667 3.66 3.66 0.00 4.85
298 299 3.508840 GGGACGAAATGGCAGCCG 61.509 66.667 7.03 0.00 0.00 5.52
299 300 3.508840 GGACGAAATGGCAGCCGG 61.509 66.667 7.03 0.00 0.00 6.13
300 301 4.179579 GACGAAATGGCAGCCGGC 62.180 66.667 21.89 21.89 43.74 6.13
309 310 3.470888 GCAGCCGGCCCTTCTAGA 61.471 66.667 26.15 0.00 36.11 2.43
310 311 2.818132 CAGCCGGCCCTTCTAGAG 59.182 66.667 26.15 0.00 0.00 2.43
311 312 2.444895 AGCCGGCCCTTCTAGAGG 60.445 66.667 26.15 0.00 45.86 3.69
319 320 3.676291 GCCCTTCTAGAGGCTCTTATG 57.324 52.381 24.13 13.25 46.14 1.90
320 321 2.289382 GCCCTTCTAGAGGCTCTTATGC 60.289 54.545 24.13 12.94 46.14 3.14
321 322 3.238597 CCCTTCTAGAGGCTCTTATGCT 58.761 50.000 24.13 0.00 44.85 3.79
322 323 3.258123 CCCTTCTAGAGGCTCTTATGCTC 59.742 52.174 24.13 0.00 44.85 4.26
323 324 4.151883 CCTTCTAGAGGCTCTTATGCTCT 58.848 47.826 24.13 0.00 39.09 4.09
324 325 4.022068 CCTTCTAGAGGCTCTTATGCTCTG 60.022 50.000 24.13 5.38 39.09 3.35
325 326 4.445557 TCTAGAGGCTCTTATGCTCTGA 57.554 45.455 24.13 0.00 0.00 3.27
326 327 4.996793 TCTAGAGGCTCTTATGCTCTGAT 58.003 43.478 24.13 0.00 0.00 2.90
327 328 4.766373 TCTAGAGGCTCTTATGCTCTGATG 59.234 45.833 24.13 0.00 0.00 3.07
328 329 2.633967 AGAGGCTCTTATGCTCTGATGG 59.366 50.000 12.24 0.00 0.00 3.51
329 330 1.698532 AGGCTCTTATGCTCTGATGGG 59.301 52.381 0.00 0.00 0.00 4.00
330 331 1.521580 GCTCTTATGCTCTGATGGGC 58.478 55.000 0.00 0.00 0.00 5.36
331 332 1.072015 GCTCTTATGCTCTGATGGGCT 59.928 52.381 0.00 0.00 0.00 5.19
332 333 2.768698 CTCTTATGCTCTGATGGGCTG 58.231 52.381 0.00 0.00 0.00 4.85
333 334 1.419012 TCTTATGCTCTGATGGGCTGG 59.581 52.381 0.00 0.00 0.00 4.85
334 335 0.475475 TTATGCTCTGATGGGCTGGG 59.525 55.000 0.00 0.00 0.00 4.45
335 336 2.060567 TATGCTCTGATGGGCTGGGC 62.061 60.000 0.00 0.00 41.87 5.36
336 337 3.806667 GCTCTGATGGGCTGGGCT 61.807 66.667 0.00 0.00 38.75 5.19
337 338 2.192443 CTCTGATGGGCTGGGCTG 59.808 66.667 0.00 0.00 0.00 4.85
338 339 3.414193 TCTGATGGGCTGGGCTGG 61.414 66.667 0.00 0.00 0.00 4.85
339 340 4.517934 CTGATGGGCTGGGCTGGG 62.518 72.222 0.00 0.00 0.00 4.45
350 351 2.592308 GGCTGGGCCCTAGTGAAG 59.408 66.667 25.70 12.17 44.06 3.02
351 352 2.124529 GCTGGGCCCTAGTGAAGC 60.125 66.667 25.70 18.88 0.00 3.86
352 353 2.971598 GCTGGGCCCTAGTGAAGCA 61.972 63.158 25.70 0.00 0.00 3.91
353 354 1.918253 CTGGGCCCTAGTGAAGCAT 59.082 57.895 25.70 0.00 0.00 3.79
354 355 0.257039 CTGGGCCCTAGTGAAGCATT 59.743 55.000 25.70 0.00 0.00 3.56
355 356 0.704076 TGGGCCCTAGTGAAGCATTT 59.296 50.000 25.70 0.00 0.00 2.32
356 357 1.106285 GGGCCCTAGTGAAGCATTTG 58.894 55.000 17.04 0.00 0.00 2.32
357 358 1.106285 GGCCCTAGTGAAGCATTTGG 58.894 55.000 0.00 0.00 0.00 3.28
358 359 1.106285 GCCCTAGTGAAGCATTTGGG 58.894 55.000 5.36 5.36 38.64 4.12
359 360 1.767759 CCCTAGTGAAGCATTTGGGG 58.232 55.000 0.00 0.00 33.91 4.96
360 361 1.106285 CCTAGTGAAGCATTTGGGGC 58.894 55.000 0.00 0.00 0.00 5.80
361 362 1.106285 CTAGTGAAGCATTTGGGGCC 58.894 55.000 0.00 0.00 0.00 5.80
362 363 0.704076 TAGTGAAGCATTTGGGGCCT 59.296 50.000 0.84 0.00 0.00 5.19
363 364 0.613012 AGTGAAGCATTTGGGGCCTC 60.613 55.000 0.84 0.00 0.00 4.70
364 365 0.613012 GTGAAGCATTTGGGGCCTCT 60.613 55.000 3.07 0.00 0.00 3.69
365 366 0.114954 TGAAGCATTTGGGGCCTCTT 59.885 50.000 3.07 0.00 0.00 2.85
366 367 1.269958 GAAGCATTTGGGGCCTCTTT 58.730 50.000 3.07 0.00 0.00 2.52
367 368 0.978907 AAGCATTTGGGGCCTCTTTG 59.021 50.000 3.07 0.00 0.00 2.77
368 369 0.906282 AGCATTTGGGGCCTCTTTGG 60.906 55.000 3.07 0.00 39.35 3.28
384 385 4.101448 GGCATCTGTGGCCCGACT 62.101 66.667 0.00 0.00 45.87 4.18
385 386 2.512515 GCATCTGTGGCCCGACTC 60.513 66.667 0.00 0.00 0.00 3.36
386 387 2.981302 CATCTGTGGCCCGACTCA 59.019 61.111 0.00 0.00 0.00 3.41
387 388 1.296392 CATCTGTGGCCCGACTCAA 59.704 57.895 0.00 0.00 0.00 3.02
388 389 0.321564 CATCTGTGGCCCGACTCAAA 60.322 55.000 0.00 0.00 0.00 2.69
389 390 0.321653 ATCTGTGGCCCGACTCAAAC 60.322 55.000 0.00 0.00 0.00 2.93
390 391 1.966451 CTGTGGCCCGACTCAAACC 60.966 63.158 0.00 0.00 0.00 3.27
391 392 2.112297 GTGGCCCGACTCAAACCA 59.888 61.111 0.00 0.00 0.00 3.67
392 393 1.303317 GTGGCCCGACTCAAACCAT 60.303 57.895 0.00 0.00 31.99 3.55
393 394 1.303236 TGGCCCGACTCAAACCATG 60.303 57.895 0.00 0.00 0.00 3.66
394 395 1.303317 GGCCCGACTCAAACCATGT 60.303 57.895 0.00 0.00 0.00 3.21
395 396 0.893727 GGCCCGACTCAAACCATGTT 60.894 55.000 0.00 0.00 0.00 2.71
396 397 0.958822 GCCCGACTCAAACCATGTTT 59.041 50.000 0.00 0.00 0.00 2.83
397 398 1.339929 GCCCGACTCAAACCATGTTTT 59.660 47.619 0.00 0.00 0.00 2.43
398 399 2.862140 GCCCGACTCAAACCATGTTTTG 60.862 50.000 9.30 9.30 37.75 2.44
399 400 2.393764 CCGACTCAAACCATGTTTTGC 58.606 47.619 10.63 0.00 36.56 3.68
400 401 2.223688 CCGACTCAAACCATGTTTTGCA 60.224 45.455 10.63 0.36 36.56 4.08
401 402 3.552684 CCGACTCAAACCATGTTTTGCAT 60.553 43.478 10.63 1.56 36.56 3.96
414 415 5.462034 TGTTTTGCATGTAGTTTGTTTGC 57.538 34.783 0.00 0.00 0.00 3.68
415 416 4.931601 TGTTTTGCATGTAGTTTGTTTGCA 59.068 33.333 0.00 0.00 41.22 4.08
416 417 5.583854 TGTTTTGCATGTAGTTTGTTTGCAT 59.416 32.000 0.00 0.00 42.34 3.96
417 418 5.903764 TTTGCATGTAGTTTGTTTGCATC 57.096 34.783 0.00 0.00 42.34 3.91
418 419 3.911868 TGCATGTAGTTTGTTTGCATCC 58.088 40.909 0.00 0.00 38.32 3.51
419 420 3.320256 TGCATGTAGTTTGTTTGCATCCA 59.680 39.130 0.00 0.00 38.32 3.41
420 421 4.021280 TGCATGTAGTTTGTTTGCATCCAT 60.021 37.500 0.00 0.00 38.32 3.41
421 422 4.931002 GCATGTAGTTTGTTTGCATCCATT 59.069 37.500 0.00 0.00 33.58 3.16
422 423 5.062558 GCATGTAGTTTGTTTGCATCCATTC 59.937 40.000 0.00 0.00 33.58 2.67
423 424 5.132897 TGTAGTTTGTTTGCATCCATTCC 57.867 39.130 0.00 0.00 0.00 3.01
424 425 3.683365 AGTTTGTTTGCATCCATTCCC 57.317 42.857 0.00 0.00 0.00 3.97
425 426 3.242011 AGTTTGTTTGCATCCATTCCCT 58.758 40.909 0.00 0.00 0.00 4.20
426 427 3.647590 AGTTTGTTTGCATCCATTCCCTT 59.352 39.130 0.00 0.00 0.00 3.95
427 428 4.102996 AGTTTGTTTGCATCCATTCCCTTT 59.897 37.500 0.00 0.00 0.00 3.11
428 429 4.703379 TTGTTTGCATCCATTCCCTTTT 57.297 36.364 0.00 0.00 0.00 2.27
429 430 4.005487 TGTTTGCATCCATTCCCTTTTG 57.995 40.909 0.00 0.00 0.00 2.44
430 431 3.390639 TGTTTGCATCCATTCCCTTTTGT 59.609 39.130 0.00 0.00 0.00 2.83
431 432 3.681593 TTGCATCCATTCCCTTTTGTG 57.318 42.857 0.00 0.00 0.00 3.33
432 433 2.886913 TGCATCCATTCCCTTTTGTGA 58.113 42.857 0.00 0.00 0.00 3.58
433 434 3.237746 TGCATCCATTCCCTTTTGTGAA 58.762 40.909 0.00 0.00 0.00 3.18
434 435 3.645212 TGCATCCATTCCCTTTTGTGAAA 59.355 39.130 0.00 0.00 0.00 2.69
435 436 4.102210 TGCATCCATTCCCTTTTGTGAAAA 59.898 37.500 0.00 0.00 0.00 2.29
436 437 5.062528 GCATCCATTCCCTTTTGTGAAAAA 58.937 37.500 0.00 0.00 0.00 1.94
437 438 5.049474 GCATCCATTCCCTTTTGTGAAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
438 439 5.029807 TCCATTCCCTTTTGTGAAAAACC 57.970 39.130 0.00 0.00 0.00 3.27
439 440 3.807071 CCATTCCCTTTTGTGAAAAACCG 59.193 43.478 0.00 0.00 0.00 4.44
440 441 4.442192 CCATTCCCTTTTGTGAAAAACCGA 60.442 41.667 0.00 0.00 0.00 4.69
441 442 3.786516 TCCCTTTTGTGAAAAACCGAC 57.213 42.857 0.00 0.00 0.00 4.79
442 443 3.090037 TCCCTTTTGTGAAAAACCGACA 58.910 40.909 0.00 0.00 0.00 4.35
443 444 3.510360 TCCCTTTTGTGAAAAACCGACAA 59.490 39.130 0.00 0.00 0.00 3.18
444 445 4.021368 TCCCTTTTGTGAAAAACCGACAAA 60.021 37.500 0.00 0.00 0.00 2.83
445 446 4.691216 CCCTTTTGTGAAAAACCGACAAAA 59.309 37.500 0.00 0.00 0.00 2.44
446 447 5.390040 CCCTTTTGTGAAAAACCGACAAAAC 60.390 40.000 0.00 0.00 0.00 2.43
447 448 5.407084 CCTTTTGTGAAAAACCGACAAAACT 59.593 36.000 0.00 0.00 0.00 2.66
448 449 6.073494 CCTTTTGTGAAAAACCGACAAAACTT 60.073 34.615 0.00 0.00 0.00 2.66
449 450 7.116519 CCTTTTGTGAAAAACCGACAAAACTTA 59.883 33.333 0.00 0.00 0.00 2.24
450 451 8.535690 TTTTGTGAAAAACCGACAAAACTTAT 57.464 26.923 0.00 0.00 0.00 1.73
451 452 8.535690 TTTGTGAAAAACCGACAAAACTTATT 57.464 26.923 0.00 0.00 0.00 1.40
452 453 9.635520 TTTGTGAAAAACCGACAAAACTTATTA 57.364 25.926 0.00 0.00 0.00 0.98
453 454 8.617761 TGTGAAAAACCGACAAAACTTATTAC 57.382 30.769 0.00 0.00 0.00 1.89
454 455 7.701501 TGTGAAAAACCGACAAAACTTATTACC 59.298 33.333 0.00 0.00 0.00 2.85
455 456 7.916977 GTGAAAAACCGACAAAACTTATTACCT 59.083 33.333 0.00 0.00 0.00 3.08
456 457 9.118300 TGAAAAACCGACAAAACTTATTACCTA 57.882 29.630 0.00 0.00 0.00 3.08
459 460 8.851541 AAACCGACAAAACTTATTACCTATCA 57.148 30.769 0.00 0.00 0.00 2.15
460 461 8.488651 AACCGACAAAACTTATTACCTATCAG 57.511 34.615 0.00 0.00 0.00 2.90
461 462 7.618137 ACCGACAAAACTTATTACCTATCAGT 58.382 34.615 0.00 0.00 0.00 3.41
462 463 7.763071 ACCGACAAAACTTATTACCTATCAGTC 59.237 37.037 0.00 0.00 0.00 3.51
463 464 7.224167 CCGACAAAACTTATTACCTATCAGTCC 59.776 40.741 0.00 0.00 0.00 3.85
464 465 7.762615 CGACAAAACTTATTACCTATCAGTCCA 59.237 37.037 0.00 0.00 0.00 4.02
465 466 9.614792 GACAAAACTTATTACCTATCAGTCCAT 57.385 33.333 0.00 0.00 0.00 3.41
476 477 9.778741 TTACCTATCAGTCCATATCATTTGTTC 57.221 33.333 0.00 0.00 0.00 3.18
477 478 7.227156 ACCTATCAGTCCATATCATTTGTTCC 58.773 38.462 0.00 0.00 0.00 3.62
478 479 6.656693 CCTATCAGTCCATATCATTTGTTCCC 59.343 42.308 0.00 0.00 0.00 3.97
479 480 5.715439 TCAGTCCATATCATTTGTTCCCT 57.285 39.130 0.00 0.00 0.00 4.20
480 481 5.684704 TCAGTCCATATCATTTGTTCCCTC 58.315 41.667 0.00 0.00 0.00 4.30
481 482 5.429762 TCAGTCCATATCATTTGTTCCCTCT 59.570 40.000 0.00 0.00 0.00 3.69
482 483 5.762218 CAGTCCATATCATTTGTTCCCTCTC 59.238 44.000 0.00 0.00 0.00 3.20
483 484 4.752101 GTCCATATCATTTGTTCCCTCTCG 59.248 45.833 0.00 0.00 0.00 4.04
484 485 4.408921 TCCATATCATTTGTTCCCTCTCGT 59.591 41.667 0.00 0.00 0.00 4.18
485 486 5.104527 TCCATATCATTTGTTCCCTCTCGTT 60.105 40.000 0.00 0.00 0.00 3.85
486 487 6.099125 TCCATATCATTTGTTCCCTCTCGTTA 59.901 38.462 0.00 0.00 0.00 3.18
487 488 6.425114 CCATATCATTTGTTCCCTCTCGTTAG 59.575 42.308 0.00 0.00 0.00 2.34
488 489 4.202245 TCATTTGTTCCCTCTCGTTAGG 57.798 45.455 0.00 0.00 36.30 2.69
499 500 4.946445 CCTCTCGTTAGGGTTATCTTTCC 58.054 47.826 0.00 0.00 32.55 3.13
500 501 4.650131 CCTCTCGTTAGGGTTATCTTTCCT 59.350 45.833 0.00 0.00 32.55 3.36
501 502 5.221283 CCTCTCGTTAGGGTTATCTTTCCTC 60.221 48.000 0.00 0.00 32.55 3.71
502 503 5.516984 TCTCGTTAGGGTTATCTTTCCTCT 58.483 41.667 0.00 0.00 32.46 3.69
503 504 5.593502 TCTCGTTAGGGTTATCTTTCCTCTC 59.406 44.000 0.00 0.00 32.46 3.20
504 505 4.337555 TCGTTAGGGTTATCTTTCCTCTCG 59.662 45.833 0.00 0.00 32.46 4.04
505 506 4.337555 CGTTAGGGTTATCTTTCCTCTCGA 59.662 45.833 0.00 0.00 32.75 4.04
506 507 5.590145 GTTAGGGTTATCTTTCCTCTCGAC 58.410 45.833 0.00 0.00 32.46 4.20
507 508 2.688958 AGGGTTATCTTTCCTCTCGACG 59.311 50.000 0.00 0.00 0.00 5.12
508 509 2.461903 GGTTATCTTTCCTCTCGACGC 58.538 52.381 0.00 0.00 0.00 5.19
509 510 2.461903 GTTATCTTTCCTCTCGACGCC 58.538 52.381 0.00 0.00 0.00 5.68
510 511 0.661552 TATCTTTCCTCTCGACGCCG 59.338 55.000 0.00 0.00 37.07 6.46
511 512 1.030488 ATCTTTCCTCTCGACGCCGA 61.030 55.000 0.00 0.00 43.35 5.54
512 513 1.514443 CTTTCCTCTCGACGCCGAC 60.514 63.158 0.00 0.00 40.30 4.79
538 539 4.647424 ATCGTTGAGATCAGTCTTCCTC 57.353 45.455 0.00 0.00 33.45 3.71
539 540 2.755655 TCGTTGAGATCAGTCTTCCTCC 59.244 50.000 0.00 0.00 33.97 4.30
540 541 2.757868 CGTTGAGATCAGTCTTCCTCCT 59.242 50.000 0.00 0.00 33.97 3.69
541 542 3.181491 CGTTGAGATCAGTCTTCCTCCTC 60.181 52.174 0.00 0.00 33.97 3.71
542 543 3.025322 TGAGATCAGTCTTCCTCCTCC 57.975 52.381 0.00 0.00 33.97 4.30
543 544 2.584965 TGAGATCAGTCTTCCTCCTCCT 59.415 50.000 0.00 0.00 33.97 3.69
544 545 3.222603 GAGATCAGTCTTCCTCCTCCTC 58.777 54.545 0.00 0.00 33.97 3.71
545 546 2.091333 AGATCAGTCTTCCTCCTCCTCC 60.091 54.545 0.00 0.00 0.00 4.30
546 547 0.033991 TCAGTCTTCCTCCTCCTCCG 60.034 60.000 0.00 0.00 0.00 4.63
547 548 1.380650 AGTCTTCCTCCTCCTCCGC 60.381 63.158 0.00 0.00 0.00 5.54
548 549 1.380650 GTCTTCCTCCTCCTCCGCT 60.381 63.158 0.00 0.00 0.00 5.52
549 550 1.380515 TCTTCCTCCTCCTCCGCTG 60.381 63.158 0.00 0.00 0.00 5.18
550 551 2.364317 TTCCTCCTCCTCCGCTGG 60.364 66.667 0.00 0.00 0.00 4.85
551 552 2.863019 CTTCCTCCTCCTCCGCTGGA 62.863 65.000 0.00 0.00 34.52 3.86
552 553 2.123077 CCTCCTCCTCCGCTGGAT 60.123 66.667 0.00 0.00 35.30 3.41
553 554 2.206536 CCTCCTCCTCCGCTGGATC 61.207 68.421 0.00 0.00 35.30 3.36
554 555 2.519541 TCCTCCTCCGCTGGATCG 60.520 66.667 0.00 0.00 35.30 3.69
555 556 2.519541 CCTCCTCCGCTGGATCGA 60.520 66.667 0.00 0.00 35.30 3.59
556 557 2.560119 CCTCCTCCGCTGGATCGAG 61.560 68.421 0.00 0.00 35.30 4.04
960 963 1.472201 GGTTTTATCTCCCGTCGGTCC 60.472 57.143 11.06 0.00 0.00 4.46
985 988 2.159310 CGCCTTGGAGATCGATCTATCC 60.159 54.545 27.36 23.88 37.25 2.59
1123 1131 3.493129 CGTTGTTTTCGAGGAAGATGACA 59.507 43.478 0.00 0.00 0.00 3.58
1126 1134 3.071023 TGTTTTCGAGGAAGATGACACCT 59.929 43.478 0.00 0.00 36.68 4.00
1133 1141 1.546476 GGAAGATGACACCTCGACAGT 59.454 52.381 0.00 0.00 0.00 3.55
1144 1152 0.322997 CTCGACAGTGGAGGACCTCT 60.323 60.000 20.97 0.17 40.14 3.69
1237 1256 1.348775 GCCCTGGGATCTTGCTAGGT 61.349 60.000 19.27 0.00 0.00 3.08
1361 1381 0.552848 AACCCGATGATCATTGCCCT 59.447 50.000 16.49 1.00 0.00 5.19
1397 1417 6.174720 TCACAAAACCAACAGAGATAGAGT 57.825 37.500 0.00 0.00 0.00 3.24
1399 1419 6.483307 TCACAAAACCAACAGAGATAGAGTTG 59.517 38.462 0.00 0.00 41.61 3.16
1426 1446 0.911769 TTGAGATCTGGGTCCGCATT 59.088 50.000 0.00 0.00 0.00 3.56
1464 1484 2.819348 GCTTCCATGGGAAAGTGAAGGT 60.819 50.000 13.02 0.00 41.54 3.50
1499 1519 5.867903 AATTGGTGAGTTTGTGGATTCAA 57.132 34.783 0.00 0.00 0.00 2.69
1613 1638 1.836802 GGAGAGAGGGTGATCTTTGCT 59.163 52.381 0.00 0.00 0.00 3.91
1635 1660 4.314961 TGTCAAGTACGAACGTCTACCTA 58.685 43.478 2.45 0.00 0.00 3.08
1686 1711 1.906574 ACGAGTTTAAGGAGCATGGGA 59.093 47.619 0.00 0.00 0.00 4.37
1687 1712 2.505819 ACGAGTTTAAGGAGCATGGGAT 59.494 45.455 0.00 0.00 0.00 3.85
1688 1713 2.874701 CGAGTTTAAGGAGCATGGGATG 59.125 50.000 0.00 0.00 0.00 3.51
1690 1715 2.852449 AGTTTAAGGAGCATGGGATGGA 59.148 45.455 0.00 0.00 0.00 3.41
1692 1717 2.196742 TAAGGAGCATGGGATGGAGT 57.803 50.000 0.00 0.00 0.00 3.85
1693 1718 2.196742 AAGGAGCATGGGATGGAGTA 57.803 50.000 0.00 0.00 0.00 2.59
1695 1720 0.034059 GGAGCATGGGATGGAGTACG 59.966 60.000 0.00 0.00 0.00 3.67
1696 1721 0.601311 GAGCATGGGATGGAGTACGC 60.601 60.000 0.00 0.00 0.00 4.42
1697 1722 1.598130 GCATGGGATGGAGTACGCC 60.598 63.158 8.97 8.97 0.00 5.68
1700 1725 2.446036 GGGATGGAGTACGCCCCT 60.446 66.667 13.56 0.00 34.39 4.79
1783 1812 1.961277 CGCAACAGAAGCCGGAACT 60.961 57.895 5.05 0.00 0.00 3.01
1793 1822 2.391389 GCCGGAACTCAAAGCCTCG 61.391 63.158 5.05 0.00 0.00 4.63
1811 1840 1.293498 GTGATGGTCAGACTGGCGT 59.707 57.895 1.81 0.00 0.00 5.68
1843 1872 1.925255 AGGGGAAGGATGATTTGCAGA 59.075 47.619 0.00 0.00 0.00 4.26
1945 1974 0.983378 GGGCACTACTGGGATGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2260 2289 0.250295 CCCAGCAGACCGAGAAACAA 60.250 55.000 0.00 0.00 0.00 2.83
2267 2296 1.134220 AGACCGAGAAACAAGGCAACA 60.134 47.619 0.00 0.00 41.41 3.33
2317 2347 4.236935 GGAAAAGCAATGAAGCGAAATCA 58.763 39.130 0.00 0.00 40.15 2.57
2327 2357 2.187946 CGAAATCAGCGGCCTCCT 59.812 61.111 0.00 0.00 0.00 3.69
2332 2362 1.271840 AATCAGCGGCCTCCTTGGTA 61.272 55.000 0.00 0.00 38.35 3.25
2346 2376 3.851128 GGTAGAGGACCGCCAGGC 61.851 72.222 0.00 0.00 42.76 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.077644 TCGTCTCCCTCTTCTCCGG 60.078 63.158 0.00 0.00 0.00 5.14
4 5 1.675552 CTCTCGTCTCCCTCTTCTCC 58.324 60.000 0.00 0.00 0.00 3.71
5 6 1.021968 GCTCTCGTCTCCCTCTTCTC 58.978 60.000 0.00 0.00 0.00 2.87
6 7 0.746563 CGCTCTCGTCTCCCTCTTCT 60.747 60.000 0.00 0.00 0.00 2.85
7 8 1.725066 CGCTCTCGTCTCCCTCTTC 59.275 63.158 0.00 0.00 0.00 2.87
8 9 2.411504 GCGCTCTCGTCTCCCTCTT 61.412 63.158 0.00 0.00 38.14 2.85
9 10 2.826738 GCGCTCTCGTCTCCCTCT 60.827 66.667 0.00 0.00 38.14 3.69
10 11 4.244802 CGCGCTCTCGTCTCCCTC 62.245 72.222 5.56 0.00 38.14 4.30
19 20 4.796231 TTTCCTCGCCGCGCTCTC 62.796 66.667 8.21 0.00 0.00 3.20
20 21 3.665675 AATTTCCTCGCCGCGCTCT 62.666 57.895 8.21 0.00 0.00 4.09
21 22 3.195698 AATTTCCTCGCCGCGCTC 61.196 61.111 8.21 0.00 0.00 5.03
22 23 3.499737 CAATTTCCTCGCCGCGCT 61.500 61.111 8.21 0.00 0.00 5.92
23 24 3.440356 CTCAATTTCCTCGCCGCGC 62.440 63.158 8.21 0.00 0.00 6.86
24 25 2.703409 CTCAATTTCCTCGCCGCG 59.297 61.111 6.39 6.39 0.00 6.46
25 26 2.398554 TGCTCAATTTCCTCGCCGC 61.399 57.895 0.00 0.00 0.00 6.53
26 27 1.425428 GTGCTCAATTTCCTCGCCG 59.575 57.895 0.00 0.00 0.00 6.46
27 28 1.803289 GGTGCTCAATTTCCTCGCC 59.197 57.895 0.00 0.00 0.00 5.54
28 29 1.425428 CGGTGCTCAATTTCCTCGC 59.575 57.895 0.00 0.00 0.00 5.03
29 30 1.425428 GCGGTGCTCAATTTCCTCG 59.575 57.895 0.00 0.00 0.00 4.63
30 31 0.960364 TGGCGGTGCTCAATTTCCTC 60.960 55.000 0.00 0.00 0.00 3.71
31 32 1.074775 TGGCGGTGCTCAATTTCCT 59.925 52.632 0.00 0.00 0.00 3.36
32 33 1.212751 GTGGCGGTGCTCAATTTCC 59.787 57.895 0.00 0.00 0.00 3.13
33 34 1.212751 GGTGGCGGTGCTCAATTTC 59.787 57.895 0.00 0.00 0.00 2.17
34 35 1.228552 AGGTGGCGGTGCTCAATTT 60.229 52.632 0.00 0.00 0.00 1.82
35 36 1.675641 GAGGTGGCGGTGCTCAATT 60.676 57.895 0.00 0.00 0.00 2.32
36 37 2.045926 GAGGTGGCGGTGCTCAAT 60.046 61.111 0.00 0.00 0.00 2.57
37 38 4.680237 CGAGGTGGCGGTGCTCAA 62.680 66.667 0.00 0.00 0.00 3.02
39 40 4.148825 ATCGAGGTGGCGGTGCTC 62.149 66.667 0.00 0.00 0.00 4.26
40 41 4.148825 GATCGAGGTGGCGGTGCT 62.149 66.667 0.00 0.00 0.00 4.40
42 43 3.019003 AAGGATCGAGGTGGCGGTG 62.019 63.158 0.00 0.00 0.00 4.94
43 44 2.683933 AAGGATCGAGGTGGCGGT 60.684 61.111 0.00 0.00 0.00 5.68
44 45 2.202932 CAAGGATCGAGGTGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
45 46 2.892425 GCAAGGATCGAGGTGGCG 60.892 66.667 0.00 0.00 0.00 5.69
46 47 2.514824 GGCAAGGATCGAGGTGGC 60.515 66.667 0.00 0.00 0.00 5.01
47 48 2.190578 GGGCAAGGATCGAGGTGG 59.809 66.667 0.00 0.00 0.00 4.61
48 49 2.202932 CGGGCAAGGATCGAGGTG 60.203 66.667 0.00 0.00 0.00 4.00
49 50 1.987855 TTCGGGCAAGGATCGAGGT 60.988 57.895 0.00 0.00 34.33 3.85
50 51 1.521681 GTTCGGGCAAGGATCGAGG 60.522 63.158 0.00 0.00 34.33 4.63
51 52 1.521681 GGTTCGGGCAAGGATCGAG 60.522 63.158 0.00 0.00 34.33 4.04
52 53 0.685131 TAGGTTCGGGCAAGGATCGA 60.685 55.000 0.00 0.00 0.00 3.59
53 54 0.393077 ATAGGTTCGGGCAAGGATCG 59.607 55.000 0.00 0.00 0.00 3.69
54 55 1.605712 CGATAGGTTCGGGCAAGGATC 60.606 57.143 0.00 0.00 44.28 3.36
55 56 0.393077 CGATAGGTTCGGGCAAGGAT 59.607 55.000 0.00 0.00 44.28 3.24
56 57 1.820581 CGATAGGTTCGGGCAAGGA 59.179 57.895 0.00 0.00 44.28 3.36
57 58 4.438346 CGATAGGTTCGGGCAAGG 57.562 61.111 0.00 0.00 44.28 3.61
65 66 3.553917 GCTTTGCTTCTCTCGATAGGTTC 59.446 47.826 0.00 0.00 0.00 3.62
66 67 3.055819 TGCTTTGCTTCTCTCGATAGGTT 60.056 43.478 0.00 0.00 0.00 3.50
67 68 2.497675 TGCTTTGCTTCTCTCGATAGGT 59.502 45.455 0.00 0.00 0.00 3.08
68 69 3.170791 TGCTTTGCTTCTCTCGATAGG 57.829 47.619 0.00 0.00 0.00 2.57
69 70 4.118410 ACATGCTTTGCTTCTCTCGATAG 58.882 43.478 0.00 0.00 0.00 2.08
70 71 4.115516 GACATGCTTTGCTTCTCTCGATA 58.884 43.478 0.00 0.00 0.00 2.92
71 72 2.935201 GACATGCTTTGCTTCTCTCGAT 59.065 45.455 0.00 0.00 0.00 3.59
72 73 2.341257 GACATGCTTTGCTTCTCTCGA 58.659 47.619 0.00 0.00 0.00 4.04
73 74 1.060266 CGACATGCTTTGCTTCTCTCG 59.940 52.381 0.00 0.00 0.00 4.04
74 75 2.341257 TCGACATGCTTTGCTTCTCTC 58.659 47.619 0.00 0.00 0.00 3.20
75 76 2.462456 TCGACATGCTTTGCTTCTCT 57.538 45.000 0.00 0.00 0.00 3.10
76 77 3.678662 GAATCGACATGCTTTGCTTCTC 58.321 45.455 0.00 0.00 0.00 2.87
77 78 2.094894 CGAATCGACATGCTTTGCTTCT 59.905 45.455 0.00 0.00 0.00 2.85
78 79 2.094258 TCGAATCGACATGCTTTGCTTC 59.906 45.455 0.00 0.00 0.00 3.86
79 80 2.076100 TCGAATCGACATGCTTTGCTT 58.924 42.857 0.00 0.00 0.00 3.91
80 81 1.725641 TCGAATCGACATGCTTTGCT 58.274 45.000 0.00 0.00 0.00 3.91
81 82 2.030823 TGATCGAATCGACATGCTTTGC 59.969 45.455 7.77 0.00 39.18 3.68
82 83 3.553105 TCTGATCGAATCGACATGCTTTG 59.447 43.478 7.77 0.00 39.18 2.77
83 84 3.785486 TCTGATCGAATCGACATGCTTT 58.215 40.909 7.77 0.00 39.18 3.51
84 85 3.379240 CTCTGATCGAATCGACATGCTT 58.621 45.455 7.77 0.00 39.18 3.91
85 86 2.288091 CCTCTGATCGAATCGACATGCT 60.288 50.000 7.77 0.00 39.18 3.79
86 87 2.057316 CCTCTGATCGAATCGACATGC 58.943 52.381 7.77 0.00 39.18 4.06
87 88 2.057316 GCCTCTGATCGAATCGACATG 58.943 52.381 7.77 0.72 39.18 3.21
88 89 1.683385 TGCCTCTGATCGAATCGACAT 59.317 47.619 7.77 0.00 39.18 3.06
89 90 1.066152 CTGCCTCTGATCGAATCGACA 59.934 52.381 7.77 7.57 39.18 4.35
90 91 1.601663 CCTGCCTCTGATCGAATCGAC 60.602 57.143 7.77 2.84 39.18 4.20
91 92 0.670706 CCTGCCTCTGATCGAATCGA 59.329 55.000 8.12 8.12 41.13 3.59
92 93 0.319383 CCCTGCCTCTGATCGAATCG 60.319 60.000 0.00 0.00 0.00 3.34
93 94 0.034616 CCCCTGCCTCTGATCGAATC 59.965 60.000 0.00 0.00 0.00 2.52
94 95 2.049627 GCCCCTGCCTCTGATCGAAT 62.050 60.000 0.00 0.00 0.00 3.34
95 96 2.735772 GCCCCTGCCTCTGATCGAA 61.736 63.158 0.00 0.00 0.00 3.71
96 97 3.157252 GCCCCTGCCTCTGATCGA 61.157 66.667 0.00 0.00 0.00 3.59
97 98 4.598894 CGCCCCTGCCTCTGATCG 62.599 72.222 0.00 0.00 0.00 3.69
98 99 4.247380 CCGCCCCTGCCTCTGATC 62.247 72.222 0.00 0.00 0.00 2.92
99 100 4.804420 TCCGCCCCTGCCTCTGAT 62.804 66.667 0.00 0.00 0.00 2.90
110 111 3.703127 AACTTCCCTCGTCCGCCC 61.703 66.667 0.00 0.00 0.00 6.13
111 112 2.434359 CAACTTCCCTCGTCCGCC 60.434 66.667 0.00 0.00 0.00 6.13
112 113 2.434359 CCAACTTCCCTCGTCCGC 60.434 66.667 0.00 0.00 0.00 5.54
113 114 2.264794 CCCAACTTCCCTCGTCCG 59.735 66.667 0.00 0.00 0.00 4.79
114 115 2.669240 CCCCAACTTCCCTCGTCC 59.331 66.667 0.00 0.00 0.00 4.79
115 116 2.046217 GCCCCAACTTCCCTCGTC 60.046 66.667 0.00 0.00 0.00 4.20
116 117 2.231380 ATGCCCCAACTTCCCTCGT 61.231 57.895 0.00 0.00 0.00 4.18
117 118 1.750399 CATGCCCCAACTTCCCTCG 60.750 63.158 0.00 0.00 0.00 4.63
118 119 0.394899 CTCATGCCCCAACTTCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
119 120 1.142688 ACTCATGCCCCAACTTCCCT 61.143 55.000 0.00 0.00 0.00 4.20
120 121 0.967380 CACTCATGCCCCAACTTCCC 60.967 60.000 0.00 0.00 0.00 3.97
121 122 0.967380 CCACTCATGCCCCAACTTCC 60.967 60.000 0.00 0.00 0.00 3.46
122 123 0.038166 TCCACTCATGCCCCAACTTC 59.962 55.000 0.00 0.00 0.00 3.01
123 124 0.038744 CTCCACTCATGCCCCAACTT 59.961 55.000 0.00 0.00 0.00 2.66
124 125 1.136329 ACTCCACTCATGCCCCAACT 61.136 55.000 0.00 0.00 0.00 3.16
125 126 0.962356 CACTCCACTCATGCCCCAAC 60.962 60.000 0.00 0.00 0.00 3.77
126 127 1.133181 TCACTCCACTCATGCCCCAA 61.133 55.000 0.00 0.00 0.00 4.12
127 128 1.538629 TCACTCCACTCATGCCCCA 60.539 57.895 0.00 0.00 0.00 4.96
128 129 1.078143 GTCACTCCACTCATGCCCC 60.078 63.158 0.00 0.00 0.00 5.80
129 130 1.448540 CGTCACTCCACTCATGCCC 60.449 63.158 0.00 0.00 0.00 5.36
130 131 0.530744 TACGTCACTCCACTCATGCC 59.469 55.000 0.00 0.00 0.00 4.40
131 132 2.196749 CATACGTCACTCCACTCATGC 58.803 52.381 0.00 0.00 0.00 4.06
132 133 2.814269 CCATACGTCACTCCACTCATG 58.186 52.381 0.00 0.00 0.00 3.07
133 134 1.137086 GCCATACGTCACTCCACTCAT 59.863 52.381 0.00 0.00 0.00 2.90
134 135 0.530744 GCCATACGTCACTCCACTCA 59.469 55.000 0.00 0.00 0.00 3.41
135 136 0.530744 TGCCATACGTCACTCCACTC 59.469 55.000 0.00 0.00 0.00 3.51
136 137 0.532573 CTGCCATACGTCACTCCACT 59.467 55.000 0.00 0.00 0.00 4.00
137 138 0.530744 TCTGCCATACGTCACTCCAC 59.469 55.000 0.00 0.00 0.00 4.02
138 139 0.530744 GTCTGCCATACGTCACTCCA 59.469 55.000 0.00 0.00 0.00 3.86
139 140 0.179108 GGTCTGCCATACGTCACTCC 60.179 60.000 0.00 0.00 34.09 3.85
140 141 0.818296 AGGTCTGCCATACGTCACTC 59.182 55.000 0.00 0.00 37.19 3.51
141 142 0.818296 GAGGTCTGCCATACGTCACT 59.182 55.000 0.00 0.00 37.19 3.41
142 143 0.525668 CGAGGTCTGCCATACGTCAC 60.526 60.000 0.00 0.00 37.19 3.67
143 144 1.663379 CCGAGGTCTGCCATACGTCA 61.663 60.000 0.00 0.00 37.19 4.35
144 145 1.065928 CCGAGGTCTGCCATACGTC 59.934 63.158 0.00 0.00 37.19 4.34
145 146 2.423898 CCCGAGGTCTGCCATACGT 61.424 63.158 0.00 0.00 37.19 3.57
146 147 2.417516 CCCGAGGTCTGCCATACG 59.582 66.667 0.00 0.00 37.19 3.06
147 148 2.109181 GCCCGAGGTCTGCCATAC 59.891 66.667 0.00 0.00 37.19 2.39
148 149 3.536917 CGCCCGAGGTCTGCCATA 61.537 66.667 0.00 0.00 37.19 2.74
167 168 4.103103 TCAGCCGACGTGCTCTCG 62.103 66.667 7.71 0.00 40.32 4.04
168 169 2.202544 CTCAGCCGACGTGCTCTC 60.203 66.667 7.71 0.00 40.32 3.20
169 170 4.427661 GCTCAGCCGACGTGCTCT 62.428 66.667 7.71 0.00 40.32 4.09
170 171 4.724602 TGCTCAGCCGACGTGCTC 62.725 66.667 7.71 0.00 40.32 4.26
171 172 4.731612 CTGCTCAGCCGACGTGCT 62.732 66.667 0.00 5.18 44.00 4.40
172 173 4.724602 TCTGCTCAGCCGACGTGC 62.725 66.667 0.00 0.00 0.00 5.34
173 174 2.505777 CTCTGCTCAGCCGACGTG 60.506 66.667 0.00 0.00 0.00 4.49
174 175 3.753434 CCTCTGCTCAGCCGACGT 61.753 66.667 0.00 0.00 0.00 4.34
201 202 4.443266 AGCCTCGCTCTTCGGTGC 62.443 66.667 0.00 0.00 30.62 5.01
202 203 2.507992 CAGCCTCGCTCTTCGGTG 60.508 66.667 0.00 0.00 36.40 4.94
203 204 4.443266 GCAGCCTCGCTCTTCGGT 62.443 66.667 0.00 0.00 36.40 4.69
209 210 4.874977 GTACCCGCAGCCTCGCTC 62.875 72.222 0.00 0.00 36.40 5.03
212 213 4.849329 GACGTACCCGCAGCCTCG 62.849 72.222 0.00 0.00 37.70 4.63
213 214 4.509737 GGACGTACCCGCAGCCTC 62.510 72.222 0.00 0.00 37.70 4.70
256 257 3.832237 AAGGAGGTGCAGTGCGGTG 62.832 63.158 11.20 0.00 0.00 4.94
257 258 3.537206 GAAGGAGGTGCAGTGCGGT 62.537 63.158 11.20 0.00 0.00 5.68
258 259 2.743928 GAAGGAGGTGCAGTGCGG 60.744 66.667 11.20 0.00 0.00 5.69
259 260 2.743928 GGAAGGAGGTGCAGTGCG 60.744 66.667 11.20 0.00 0.00 5.34
260 261 1.376553 GAGGAAGGAGGTGCAGTGC 60.377 63.158 8.58 8.58 0.00 4.40
261 262 0.036577 CTGAGGAAGGAGGTGCAGTG 60.037 60.000 0.00 0.00 0.00 3.66
262 263 2.370718 CTGAGGAAGGAGGTGCAGT 58.629 57.895 0.00 0.00 0.00 4.40
274 275 1.910580 GCCATTTCGTCCCCTGAGGA 61.911 60.000 0.00 0.00 44.91 3.71
275 276 1.452108 GCCATTTCGTCCCCTGAGG 60.452 63.158 0.00 0.00 0.00 3.86
276 277 0.745845 CTGCCATTTCGTCCCCTGAG 60.746 60.000 0.00 0.00 0.00 3.35
277 278 1.299648 CTGCCATTTCGTCCCCTGA 59.700 57.895 0.00 0.00 0.00 3.86
278 279 2.409870 GCTGCCATTTCGTCCCCTG 61.410 63.158 0.00 0.00 0.00 4.45
279 280 2.044946 GCTGCCATTTCGTCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
280 281 3.140814 GGCTGCCATTTCGTCCCC 61.141 66.667 15.17 0.00 0.00 4.81
281 282 3.508840 CGGCTGCCATTTCGTCCC 61.509 66.667 20.29 0.00 0.00 4.46
282 283 3.508840 CCGGCTGCCATTTCGTCC 61.509 66.667 20.29 0.00 0.00 4.79
283 284 4.179579 GCCGGCTGCCATTTCGTC 62.180 66.667 22.15 0.00 0.00 4.20
292 293 3.453070 CTCTAGAAGGGCCGGCTGC 62.453 68.421 28.56 10.77 40.16 5.25
293 294 2.801631 CCTCTAGAAGGGCCGGCTG 61.802 68.421 28.56 8.06 42.03 4.85
294 295 2.444895 CCTCTAGAAGGGCCGGCT 60.445 66.667 28.56 6.33 42.03 5.52
295 296 4.243008 GCCTCTAGAAGGGCCGGC 62.243 72.222 21.18 21.18 46.32 6.13
299 300 2.289382 GCATAAGAGCCTCTAGAAGGGC 60.289 54.545 13.85 13.85 46.32 5.19
300 301 3.238597 AGCATAAGAGCCTCTAGAAGGG 58.761 50.000 0.00 2.60 46.32 3.95
302 303 4.826733 TCAGAGCATAAGAGCCTCTAGAAG 59.173 45.833 0.00 0.00 34.23 2.85
303 304 4.797743 TCAGAGCATAAGAGCCTCTAGAA 58.202 43.478 0.00 0.00 34.23 2.10
304 305 4.445557 TCAGAGCATAAGAGCCTCTAGA 57.554 45.455 0.00 0.00 34.23 2.43
305 306 4.082081 CCATCAGAGCATAAGAGCCTCTAG 60.082 50.000 0.00 0.00 34.23 2.43
306 307 3.831333 CCATCAGAGCATAAGAGCCTCTA 59.169 47.826 0.00 0.00 34.23 2.43
307 308 2.633967 CCATCAGAGCATAAGAGCCTCT 59.366 50.000 0.00 0.00 34.23 3.69
308 309 2.289569 CCCATCAGAGCATAAGAGCCTC 60.290 54.545 0.00 0.00 34.23 4.70
309 310 1.698532 CCCATCAGAGCATAAGAGCCT 59.301 52.381 0.00 0.00 34.23 4.58
310 311 1.881498 GCCCATCAGAGCATAAGAGCC 60.881 57.143 0.00 0.00 34.23 4.70
311 312 1.072015 AGCCCATCAGAGCATAAGAGC 59.928 52.381 0.00 0.00 0.00 4.09
312 313 2.550423 CCAGCCCATCAGAGCATAAGAG 60.550 54.545 0.00 0.00 0.00 2.85
313 314 1.419012 CCAGCCCATCAGAGCATAAGA 59.581 52.381 0.00 0.00 0.00 2.10
314 315 1.544982 CCCAGCCCATCAGAGCATAAG 60.545 57.143 0.00 0.00 0.00 1.73
315 316 0.475475 CCCAGCCCATCAGAGCATAA 59.525 55.000 0.00 0.00 0.00 1.90
316 317 2.060567 GCCCAGCCCATCAGAGCATA 62.061 60.000 0.00 0.00 0.00 3.14
317 318 2.924640 CCCAGCCCATCAGAGCAT 59.075 61.111 0.00 0.00 0.00 3.79
318 319 4.119363 GCCCAGCCCATCAGAGCA 62.119 66.667 0.00 0.00 0.00 4.26
319 320 3.806667 AGCCCAGCCCATCAGAGC 61.807 66.667 0.00 0.00 0.00 4.09
320 321 2.192443 CAGCCCAGCCCATCAGAG 59.808 66.667 0.00 0.00 0.00 3.35
321 322 3.414193 CCAGCCCAGCCCATCAGA 61.414 66.667 0.00 0.00 0.00 3.27
322 323 4.517934 CCCAGCCCAGCCCATCAG 62.518 72.222 0.00 0.00 0.00 2.90
334 335 2.124529 GCTTCACTAGGGCCCAGC 60.125 66.667 27.56 19.64 0.00 4.85
335 336 0.257039 AATGCTTCACTAGGGCCCAG 59.743 55.000 27.56 21.21 0.00 4.45
336 337 0.704076 AAATGCTTCACTAGGGCCCA 59.296 50.000 27.56 9.36 0.00 5.36
337 338 1.106285 CAAATGCTTCACTAGGGCCC 58.894 55.000 16.46 16.46 0.00 5.80
338 339 1.106285 CCAAATGCTTCACTAGGGCC 58.894 55.000 0.00 0.00 0.00 5.80
339 340 1.106285 CCCAAATGCTTCACTAGGGC 58.894 55.000 0.00 0.00 0.00 5.19
340 341 1.767759 CCCCAAATGCTTCACTAGGG 58.232 55.000 0.00 0.00 34.58 3.53
341 342 1.106285 GCCCCAAATGCTTCACTAGG 58.894 55.000 0.00 0.00 0.00 3.02
342 343 1.106285 GGCCCCAAATGCTTCACTAG 58.894 55.000 0.00 0.00 0.00 2.57
343 344 0.704076 AGGCCCCAAATGCTTCACTA 59.296 50.000 0.00 0.00 0.00 2.74
344 345 0.613012 GAGGCCCCAAATGCTTCACT 60.613 55.000 0.00 0.00 35.16 3.41
345 346 0.613012 AGAGGCCCCAAATGCTTCAC 60.613 55.000 0.00 0.00 37.30 3.18
346 347 0.114954 AAGAGGCCCCAAATGCTTCA 59.885 50.000 0.00 0.00 37.30 3.02
347 348 1.066645 CAAAGAGGCCCCAAATGCTTC 60.067 52.381 0.00 0.00 35.27 3.86
348 349 0.978907 CAAAGAGGCCCCAAATGCTT 59.021 50.000 0.00 0.00 0.00 3.91
349 350 0.906282 CCAAAGAGGCCCCAAATGCT 60.906 55.000 0.00 0.00 0.00 3.79
350 351 1.598517 CCAAAGAGGCCCCAAATGC 59.401 57.895 0.00 0.00 0.00 3.56
360 361 2.187073 GCCACAGATGCCAAAGAGG 58.813 57.895 0.00 0.00 41.84 3.69
368 369 2.512515 GAGTCGGGCCACAGATGC 60.513 66.667 4.39 0.00 0.00 3.91
369 370 0.321564 TTTGAGTCGGGCCACAGATG 60.322 55.000 4.39 0.00 0.00 2.90
370 371 0.321653 GTTTGAGTCGGGCCACAGAT 60.322 55.000 4.39 0.00 0.00 2.90
371 372 1.070786 GTTTGAGTCGGGCCACAGA 59.929 57.895 4.39 0.00 0.00 3.41
372 373 1.966451 GGTTTGAGTCGGGCCACAG 60.966 63.158 4.39 0.00 0.00 3.66
373 374 2.063015 ATGGTTTGAGTCGGGCCACA 62.063 55.000 4.39 0.00 31.47 4.17
374 375 1.303317 ATGGTTTGAGTCGGGCCAC 60.303 57.895 4.39 0.58 31.47 5.01
375 376 1.303236 CATGGTTTGAGTCGGGCCA 60.303 57.895 4.39 2.52 0.00 5.36
376 377 0.893727 AACATGGTTTGAGTCGGGCC 60.894 55.000 0.00 0.00 0.00 5.80
377 378 0.958822 AAACATGGTTTGAGTCGGGC 59.041 50.000 0.00 0.00 0.00 6.13
378 379 2.862140 GCAAAACATGGTTTGAGTCGGG 60.862 50.000 34.78 11.25 40.29 5.14
379 380 2.223688 TGCAAAACATGGTTTGAGTCGG 60.224 45.455 34.78 11.95 40.29 4.79
380 381 3.077229 TGCAAAACATGGTTTGAGTCG 57.923 42.857 34.78 12.65 40.29 4.18
391 392 5.583854 TGCAAACAAACTACATGCAAAACAT 59.416 32.000 0.00 0.00 43.39 2.71
392 393 4.931601 TGCAAACAAACTACATGCAAAACA 59.068 33.333 0.00 0.00 43.39 2.83
393 394 5.462034 TGCAAACAAACTACATGCAAAAC 57.538 34.783 0.00 0.00 43.39 2.43
398 399 3.911868 TGGATGCAAACAAACTACATGC 58.088 40.909 0.00 0.00 37.52 4.06
399 400 5.577945 GGAATGGATGCAAACAAACTACATG 59.422 40.000 0.00 0.00 0.00 3.21
400 401 5.337491 GGGAATGGATGCAAACAAACTACAT 60.337 40.000 0.00 0.00 0.00 2.29
401 402 4.021544 GGGAATGGATGCAAACAAACTACA 60.022 41.667 0.00 0.00 0.00 2.74
402 403 4.220602 AGGGAATGGATGCAAACAAACTAC 59.779 41.667 0.00 0.00 0.00 2.73
403 404 4.415596 AGGGAATGGATGCAAACAAACTA 58.584 39.130 0.00 0.00 0.00 2.24
404 405 3.242011 AGGGAATGGATGCAAACAAACT 58.758 40.909 0.00 0.00 0.00 2.66
405 406 3.683365 AGGGAATGGATGCAAACAAAC 57.317 42.857 0.00 0.00 0.00 2.93
406 407 4.703379 AAAGGGAATGGATGCAAACAAA 57.297 36.364 0.00 0.00 0.00 2.83
407 408 4.141528 ACAAAAGGGAATGGATGCAAACAA 60.142 37.500 0.00 0.00 0.00 2.83
408 409 3.390639 ACAAAAGGGAATGGATGCAAACA 59.609 39.130 0.00 0.00 0.00 2.83
409 410 3.747529 CACAAAAGGGAATGGATGCAAAC 59.252 43.478 0.00 0.00 0.00 2.93
410 411 3.645212 TCACAAAAGGGAATGGATGCAAA 59.355 39.130 0.00 0.00 0.00 3.68
411 412 3.237746 TCACAAAAGGGAATGGATGCAA 58.762 40.909 0.00 0.00 0.00 4.08
412 413 2.886913 TCACAAAAGGGAATGGATGCA 58.113 42.857 0.00 0.00 0.00 3.96
413 414 3.959535 TTCACAAAAGGGAATGGATGC 57.040 42.857 0.00 0.00 0.00 3.91
414 415 5.469760 GGTTTTTCACAAAAGGGAATGGATG 59.530 40.000 0.00 0.00 32.32 3.51
415 416 5.620206 GGTTTTTCACAAAAGGGAATGGAT 58.380 37.500 0.00 0.00 32.32 3.41
416 417 4.442192 CGGTTTTTCACAAAAGGGAATGGA 60.442 41.667 0.00 0.00 32.32 3.41
417 418 3.807071 CGGTTTTTCACAAAAGGGAATGG 59.193 43.478 0.00 0.00 32.32 3.16
418 419 4.506288 GTCGGTTTTTCACAAAAGGGAATG 59.494 41.667 0.00 0.00 32.32 2.67
419 420 4.160626 TGTCGGTTTTTCACAAAAGGGAAT 59.839 37.500 0.00 0.00 32.32 3.01
420 421 3.510360 TGTCGGTTTTTCACAAAAGGGAA 59.490 39.130 0.00 0.00 32.32 3.97
421 422 3.090037 TGTCGGTTTTTCACAAAAGGGA 58.910 40.909 0.00 0.00 32.32 4.20
422 423 3.512033 TGTCGGTTTTTCACAAAAGGG 57.488 42.857 0.00 0.00 32.32 3.95
423 424 5.407084 AGTTTTGTCGGTTTTTCACAAAAGG 59.593 36.000 8.96 0.00 45.83 3.11
424 425 6.460664 AGTTTTGTCGGTTTTTCACAAAAG 57.539 33.333 8.96 0.00 45.83 2.27
425 426 6.846325 AAGTTTTGTCGGTTTTTCACAAAA 57.154 29.167 5.34 5.34 44.06 2.44
426 427 8.535690 AATAAGTTTTGTCGGTTTTTCACAAA 57.464 26.923 0.00 0.00 38.06 2.83
427 428 9.074443 GTAATAAGTTTTGTCGGTTTTTCACAA 57.926 29.630 0.00 0.00 0.00 3.33
428 429 7.701501 GGTAATAAGTTTTGTCGGTTTTTCACA 59.298 33.333 0.00 0.00 0.00 3.58
429 430 7.916977 AGGTAATAAGTTTTGTCGGTTTTTCAC 59.083 33.333 0.00 0.00 0.00 3.18
430 431 7.998580 AGGTAATAAGTTTTGTCGGTTTTTCA 58.001 30.769 0.00 0.00 0.00 2.69
433 434 9.287373 TGATAGGTAATAAGTTTTGTCGGTTTT 57.713 29.630 0.00 0.00 0.00 2.43
434 435 8.851541 TGATAGGTAATAAGTTTTGTCGGTTT 57.148 30.769 0.00 0.00 0.00 3.27
435 436 8.098912 ACTGATAGGTAATAAGTTTTGTCGGTT 58.901 33.333 0.00 0.00 0.00 4.44
436 437 7.618137 ACTGATAGGTAATAAGTTTTGTCGGT 58.382 34.615 0.00 0.00 0.00 4.69
437 438 7.224167 GGACTGATAGGTAATAAGTTTTGTCGG 59.776 40.741 0.00 0.00 28.27 4.79
438 439 7.762615 TGGACTGATAGGTAATAAGTTTTGTCG 59.237 37.037 0.00 0.00 28.27 4.35
439 440 9.614792 ATGGACTGATAGGTAATAAGTTTTGTC 57.385 33.333 0.00 0.00 28.27 3.18
450 451 9.778741 GAACAAATGATATGGACTGATAGGTAA 57.221 33.333 0.00 0.00 0.00 2.85
451 452 8.375506 GGAACAAATGATATGGACTGATAGGTA 58.624 37.037 0.00 0.00 0.00 3.08
452 453 7.227156 GGAACAAATGATATGGACTGATAGGT 58.773 38.462 0.00 0.00 0.00 3.08
453 454 6.656693 GGGAACAAATGATATGGACTGATAGG 59.343 42.308 0.00 0.00 0.00 2.57
454 455 7.456725 AGGGAACAAATGATATGGACTGATAG 58.543 38.462 0.00 0.00 0.00 2.08
455 456 7.293299 AGAGGGAACAAATGATATGGACTGATA 59.707 37.037 0.00 0.00 0.00 2.15
456 457 6.102321 AGAGGGAACAAATGATATGGACTGAT 59.898 38.462 0.00 0.00 0.00 2.90
457 458 5.429762 AGAGGGAACAAATGATATGGACTGA 59.570 40.000 0.00 0.00 0.00 3.41
458 459 5.688807 AGAGGGAACAAATGATATGGACTG 58.311 41.667 0.00 0.00 0.00 3.51
459 460 5.453903 CGAGAGGGAACAAATGATATGGACT 60.454 44.000 0.00 0.00 0.00 3.85
460 461 4.752101 CGAGAGGGAACAAATGATATGGAC 59.248 45.833 0.00 0.00 0.00 4.02
461 462 4.408921 ACGAGAGGGAACAAATGATATGGA 59.591 41.667 0.00 0.00 0.00 3.41
462 463 4.708177 ACGAGAGGGAACAAATGATATGG 58.292 43.478 0.00 0.00 0.00 2.74
463 464 6.425114 CCTAACGAGAGGGAACAAATGATATG 59.575 42.308 0.00 0.00 32.39 1.78
464 465 6.525629 CCTAACGAGAGGGAACAAATGATAT 58.474 40.000 0.00 0.00 32.39 1.63
465 466 5.914033 CCTAACGAGAGGGAACAAATGATA 58.086 41.667 0.00 0.00 32.39 2.15
466 467 4.770795 CCTAACGAGAGGGAACAAATGAT 58.229 43.478 0.00 0.00 32.39 2.45
467 468 4.202245 CCTAACGAGAGGGAACAAATGA 57.798 45.455 0.00 0.00 32.39 2.57
477 478 4.650131 AGGAAAGATAACCCTAACGAGAGG 59.350 45.833 0.00 0.00 36.23 3.69
478 479 5.595133 AGAGGAAAGATAACCCTAACGAGAG 59.405 44.000 0.00 0.00 0.00 3.20
479 480 5.516984 AGAGGAAAGATAACCCTAACGAGA 58.483 41.667 0.00 0.00 0.00 4.04
480 481 5.505985 CGAGAGGAAAGATAACCCTAACGAG 60.506 48.000 0.00 0.00 33.70 4.18
481 482 4.337555 CGAGAGGAAAGATAACCCTAACGA 59.662 45.833 0.00 0.00 33.70 3.85
482 483 4.337555 TCGAGAGGAAAGATAACCCTAACG 59.662 45.833 0.00 0.00 33.41 3.18
483 484 5.590145 GTCGAGAGGAAAGATAACCCTAAC 58.410 45.833 0.00 0.00 0.00 2.34
484 485 4.337555 CGTCGAGAGGAAAGATAACCCTAA 59.662 45.833 0.00 0.00 0.00 2.69
485 486 3.881688 CGTCGAGAGGAAAGATAACCCTA 59.118 47.826 0.00 0.00 0.00 3.53
486 487 2.688958 CGTCGAGAGGAAAGATAACCCT 59.311 50.000 0.00 0.00 0.00 4.34
487 488 2.798853 GCGTCGAGAGGAAAGATAACCC 60.799 54.545 0.00 0.00 0.00 4.11
488 489 2.461903 GCGTCGAGAGGAAAGATAACC 58.538 52.381 0.00 0.00 0.00 2.85
489 490 2.461903 GGCGTCGAGAGGAAAGATAAC 58.538 52.381 0.00 0.00 0.00 1.89
490 491 1.065102 CGGCGTCGAGAGGAAAGATAA 59.935 52.381 1.44 0.00 39.00 1.75
491 492 0.661552 CGGCGTCGAGAGGAAAGATA 59.338 55.000 1.44 0.00 39.00 1.98
492 493 1.030488 TCGGCGTCGAGAGGAAAGAT 61.030 55.000 8.66 0.00 40.88 2.40
493 494 1.673337 TCGGCGTCGAGAGGAAAGA 60.673 57.895 8.66 0.00 40.88 2.52
494 495 1.514443 GTCGGCGTCGAGAGGAAAG 60.514 63.158 14.75 0.00 46.91 2.62
495 496 2.564975 GTCGGCGTCGAGAGGAAA 59.435 61.111 14.75 0.00 46.91 3.13
496 497 3.796443 CGTCGGCGTCGAGAGGAA 61.796 66.667 21.17 0.00 46.91 3.36
517 518 3.383185 GGAGGAAGACTGATCTCAACGAT 59.617 47.826 0.00 0.00 32.34 3.73
518 519 2.755655 GGAGGAAGACTGATCTCAACGA 59.244 50.000 0.00 0.00 32.34 3.85
519 520 2.757868 AGGAGGAAGACTGATCTCAACG 59.242 50.000 0.00 0.00 32.34 4.10
520 521 3.132111 GGAGGAGGAAGACTGATCTCAAC 59.868 52.174 0.00 0.00 32.34 3.18
521 522 3.012274 AGGAGGAGGAAGACTGATCTCAA 59.988 47.826 0.00 0.00 32.34 3.02
522 523 2.584965 AGGAGGAGGAAGACTGATCTCA 59.415 50.000 0.00 0.00 32.34 3.27
523 524 3.222603 GAGGAGGAGGAAGACTGATCTC 58.777 54.545 0.00 0.00 32.34 2.75
524 525 2.091333 GGAGGAGGAGGAAGACTGATCT 60.091 54.545 0.00 0.00 36.42 2.75
525 526 2.316108 GGAGGAGGAGGAAGACTGATC 58.684 57.143 0.00 0.00 0.00 2.92
526 527 1.410932 CGGAGGAGGAGGAAGACTGAT 60.411 57.143 0.00 0.00 0.00 2.90
527 528 0.033991 CGGAGGAGGAGGAAGACTGA 60.034 60.000 0.00 0.00 0.00 3.41
528 529 1.671901 GCGGAGGAGGAGGAAGACTG 61.672 65.000 0.00 0.00 0.00 3.51
529 530 1.380650 GCGGAGGAGGAGGAAGACT 60.381 63.158 0.00 0.00 0.00 3.24
530 531 1.380650 AGCGGAGGAGGAGGAAGAC 60.381 63.158 0.00 0.00 0.00 3.01
531 532 1.380515 CAGCGGAGGAGGAGGAAGA 60.381 63.158 0.00 0.00 0.00 2.87
532 533 2.430610 CCAGCGGAGGAGGAGGAAG 61.431 68.421 0.00 0.00 0.00 3.46
533 534 2.243774 ATCCAGCGGAGGAGGAGGAA 62.244 60.000 3.76 0.00 41.90 3.36
534 535 2.648613 GATCCAGCGGAGGAGGAGGA 62.649 65.000 3.76 0.00 41.90 3.71
535 536 2.123077 ATCCAGCGGAGGAGGAGG 60.123 66.667 3.76 0.00 41.90 4.30
536 537 2.560119 CGATCCAGCGGAGGAGGAG 61.560 68.421 3.76 0.00 41.90 3.69
537 538 2.519541 CGATCCAGCGGAGGAGGA 60.520 66.667 3.76 0.00 41.90 3.71
538 539 2.519541 TCGATCCAGCGGAGGAGG 60.520 66.667 3.76 0.00 41.90 4.30
539 540 3.038280 CTCGATCCAGCGGAGGAG 58.962 66.667 11.25 11.25 41.90 3.69
925 926 4.677151 ACCCTCACACCCCTCCCC 62.677 72.222 0.00 0.00 0.00 4.81
926 927 1.726192 AAAACCCTCACACCCCTCCC 61.726 60.000 0.00 0.00 0.00 4.30
927 928 1.069775 TAAAACCCTCACACCCCTCC 58.930 55.000 0.00 0.00 0.00 4.30
928 929 2.576648 AGATAAAACCCTCACACCCCTC 59.423 50.000 0.00 0.00 0.00 4.30
960 963 2.374830 ATCGATCTCCAAGGCGCAGG 62.375 60.000 10.83 8.24 0.00 4.85
985 988 1.372087 GCCATGGCTTGTCGAAGGAG 61.372 60.000 29.98 0.00 38.26 3.69
1076 1081 1.258676 GAGGTCGTCTTCCTTGAGGT 58.741 55.000 0.00 0.00 35.20 3.85
1123 1131 1.606889 GGTCCTCCACTGTCGAGGT 60.607 63.158 18.98 0.00 46.09 3.85
1126 1134 0.609406 CAGAGGTCCTCCACTGTCGA 60.609 60.000 15.72 0.00 43.91 4.20
1133 1141 0.979709 CATCCAGCAGAGGTCCTCCA 60.980 60.000 15.72 0.00 35.89 3.86
1144 1152 2.169978 CTCTGACCAAGATCATCCAGCA 59.830 50.000 0.00 0.00 33.29 4.41
1237 1256 2.625790 CCAGGGTTTTGATTTTCACCGA 59.374 45.455 0.00 0.00 0.00 4.69
1293 1313 0.324738 TGACTCTCTCCCAATCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
1361 1381 7.178097 TGTTGGTTTTGTGAATCCATCATATGA 59.822 33.333 8.10 8.10 40.97 2.15
1397 1417 5.304686 ACCCAGATCTCAAACTTGTACAA 57.695 39.130 8.28 8.28 0.00 2.41
1399 1419 4.254492 GGACCCAGATCTCAAACTTGTAC 58.746 47.826 0.00 0.00 0.00 2.90
1613 1638 3.141398 AGGTAGACGTTCGTACTTGACA 58.859 45.455 0.00 0.00 0.00 3.58
1635 1660 1.973281 CGCAGACCTGGCACCAATT 60.973 57.895 0.00 0.00 0.00 2.32
1690 1715 4.835891 CGAGGGGAGGGGCGTACT 62.836 72.222 0.00 0.00 0.00 2.73
1783 1812 0.684535 TGACCATCACGAGGCTTTGA 59.315 50.000 2.60 2.60 0.00 2.69
1793 1822 0.530744 TACGCCAGTCTGACCATCAC 59.469 55.000 3.76 0.00 0.00 3.06
1811 1840 1.584724 CTTCCCCTCCTCCAAGCTTA 58.415 55.000 0.00 0.00 0.00 3.09
1843 1872 4.795469 TCCATATCAGTGGCATGTTGATT 58.205 39.130 14.45 4.15 39.19 2.57
1945 1974 4.681744 CTTGTCTTTGCTGCTAAAACCAA 58.318 39.130 0.00 2.40 0.00 3.67
2223 2252 3.702045 CTGGGTAGTCTTGGGTCTCTTAG 59.298 52.174 0.00 0.00 0.00 2.18
2224 2253 3.709587 CTGGGTAGTCTTGGGTCTCTTA 58.290 50.000 0.00 0.00 0.00 2.10
2231 2260 0.250513 GTCTGCTGGGTAGTCTTGGG 59.749 60.000 0.00 0.00 0.00 4.12
2242 2271 1.151668 CTTGTTTCTCGGTCTGCTGG 58.848 55.000 0.00 0.00 0.00 4.85
2260 2289 3.118261 TCTTCTTCAGAACTGTGTTGCCT 60.118 43.478 1.73 0.00 0.00 4.75
2267 2296 4.202295 TGCTGTGATCTTCTTCAGAACTGT 60.202 41.667 1.73 0.00 34.16 3.55
2317 2347 2.038975 TCTACCAAGGAGGCCGCT 59.961 61.111 6.40 0.00 43.14 5.52
2340 2370 1.065273 CAGATTCATTGCGCCTGGC 59.935 57.895 9.11 9.11 43.96 4.85
2341 2371 1.065273 GCAGATTCATTGCGCCTGG 59.935 57.895 4.18 0.00 0.00 4.45
2343 2373 1.878088 CATAGCAGATTCATTGCGCCT 59.122 47.619 4.18 0.00 45.98 5.52
2346 2376 2.350484 CCAGCATAGCAGATTCATTGCG 60.350 50.000 0.00 0.00 45.98 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.