Multiple sequence alignment - TraesCS7B01G200400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G200400 chr7B 100.000 4206 0 0 1 4206 363289993 363285788 0.000000e+00 7768.0
1 TraesCS7B01G200400 chr7D 93.840 1737 61 16 1973 3703 288460945 288462641 0.000000e+00 2573.0
2 TraesCS7B01G200400 chr7D 97.120 1111 13 3 825 1934 288459852 288460944 0.000000e+00 1857.0
3 TraesCS7B01G200400 chr7D 92.988 328 14 3 3880 4206 288462960 288463279 1.770000e-128 470.0
4 TraesCS7B01G200400 chr7D 88.889 135 10 3 284 414 288408517 288408650 1.210000e-35 161.0
5 TraesCS7B01G200400 chr7D 89.091 110 9 2 3771 3879 288462876 288462983 2.640000e-27 134.0
6 TraesCS7B01G200400 chr7A 94.795 1460 40 16 2160 3605 324925192 324926629 0.000000e+00 2242.0
7 TraesCS7B01G200400 chr7A 95.912 1370 26 9 795 2160 324923689 324925032 0.000000e+00 2193.0
8 TraesCS7B01G200400 chr7A 90.323 434 19 5 3773 4206 324936531 324936941 7.950000e-152 547.0
9 TraesCS7B01G200400 chr7A 92.381 105 7 1 3600 3703 324936416 324936520 9.420000e-32 148.0
10 TraesCS7B01G200400 chr7A 84.328 134 15 3 1 134 324922328 324922455 4.410000e-25 126.0
11 TraesCS7B01G200400 chr2B 85.677 384 41 10 419 797 51674683 51675057 3.940000e-105 392.0
12 TraesCS7B01G200400 chr1B 85.195 385 49 7 419 799 138855095 138855475 5.100000e-104 388.0
13 TraesCS7B01G200400 chr1B 84.091 132 18 2 12 140 133274064 133273933 1.590000e-24 124.0
14 TraesCS7B01G200400 chr1B 84.043 94 12 3 49 140 681035467 681035559 2.080000e-13 87.9
15 TraesCS7B01G200400 chr6D 84.949 392 45 12 420 800 278603503 278603891 6.600000e-103 385.0
16 TraesCS7B01G200400 chr6B 84.872 390 44 10 417 799 66974440 66974059 3.070000e-101 379.0
17 TraesCS7B01G200400 chr3D 84.737 380 43 9 419 795 72042110 72042477 2.390000e-97 366.0
18 TraesCS7B01G200400 chr5D 84.514 381 42 11 420 795 67871357 67871725 1.110000e-95 361.0
19 TraesCS7B01G200400 chr5D 100.000 33 0 0 175 207 349873870 349873902 1.260000e-05 62.1
20 TraesCS7B01G200400 chr1D 84.474 380 44 11 421 796 74410060 74409692 1.110000e-95 361.0
21 TraesCS7B01G200400 chr2D 83.854 384 52 8 418 795 20687251 20687630 1.440000e-94 357.0
22 TraesCS7B01G200400 chr4D 83.377 379 46 12 420 795 431419122 431418758 6.740000e-88 335.0
23 TraesCS7B01G200400 chr3A 87.671 73 4 3 2661 2732 87358128 87358196 3.490000e-11 80.5
24 TraesCS7B01G200400 chr3B 86.111 72 7 1 2661 2732 119364144 119364212 1.620000e-09 75.0
25 TraesCS7B01G200400 chr4B 97.059 34 1 0 2659 2692 406811938 406811905 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G200400 chr7B 363285788 363289993 4205 True 7768.000000 7768 100.000000 1 4206 1 chr7B.!!$R1 4205
1 TraesCS7B01G200400 chr7D 288459852 288463279 3427 False 1258.500000 2573 93.259750 825 4206 4 chr7D.!!$F2 3381
2 TraesCS7B01G200400 chr7A 324922328 324926629 4301 False 1520.333333 2242 91.678333 1 3605 3 chr7A.!!$F1 3604
3 TraesCS7B01G200400 chr7A 324936416 324936941 525 False 347.500000 547 91.352000 3600 4206 2 chr7A.!!$F2 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 1144 0.101759 TATACTCCAACGGTCTGCGC 59.898 55.0 0.0 0.0 0.0 6.09 F
1976 2853 0.107268 AGTTTTACCGCTCCACCGTT 59.893 50.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2990 1.200483 CAGCGCGTCTAACTGTATGG 58.800 55.0 8.43 0.0 0.0 2.74 R
3869 5088 0.958876 GAATCGGACACAACCACCCC 60.959 60.0 0.00 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.119694 CAAAACTATAAGAGAGGGCCAGAC 58.880 45.833 6.18 0.00 0.00 3.51
33 34 3.243724 AGAGGGCCAGACATTATACTCC 58.756 50.000 6.18 0.00 0.00 3.85
40 41 5.703130 GGCCAGACATTATACTCCAATTCTC 59.297 44.000 0.00 0.00 0.00 2.87
74 75 4.385825 TGCTTCTTTGGAGTTTATGACGT 58.614 39.130 0.00 0.00 0.00 4.34
75 76 4.213270 TGCTTCTTTGGAGTTTATGACGTG 59.787 41.667 0.00 0.00 0.00 4.49
76 77 4.378459 GCTTCTTTGGAGTTTATGACGTGG 60.378 45.833 0.00 0.00 0.00 4.94
77 78 3.670625 TCTTTGGAGTTTATGACGTGGG 58.329 45.455 0.00 0.00 0.00 4.61
78 79 3.325425 TCTTTGGAGTTTATGACGTGGGA 59.675 43.478 0.00 0.00 0.00 4.37
79 80 3.773418 TTGGAGTTTATGACGTGGGAA 57.227 42.857 0.00 0.00 0.00 3.97
80 81 3.328382 TGGAGTTTATGACGTGGGAAG 57.672 47.619 0.00 0.00 0.00 3.46
81 82 2.007608 GGAGTTTATGACGTGGGAAGC 58.992 52.381 0.00 0.00 0.00 3.86
114 115 6.913170 AGACAGGCCGCAATTATTTATTATG 58.087 36.000 0.00 0.00 0.00 1.90
121 122 9.158233 GGCCGCAATTATTTATTATGTCTACTA 57.842 33.333 0.00 0.00 0.00 1.82
137 138 6.746120 TGTCTACTAGGTTTTGACTCTGAAC 58.254 40.000 0.00 0.00 0.00 3.18
157 1010 6.343703 TGAACCTTAGATGTGAGATGATGTG 58.656 40.000 0.00 0.00 0.00 3.21
160 1013 2.634815 AGATGTGAGATGATGTGGGC 57.365 50.000 0.00 0.00 0.00 5.36
181 1034 6.127196 TGGGCCGCAAAATCTTTCTTTAATAT 60.127 34.615 0.00 0.00 0.00 1.28
209 1062 6.707440 TTGGCAAAGTCTTGAACTCAATAA 57.293 33.333 0.00 0.00 37.17 1.40
216 1069 5.931532 AGTCTTGAACTCAATAATGCGTTG 58.068 37.500 0.08 0.00 34.75 4.10
246 1100 4.100808 TGCAGCCAACTAATCCAAAAGTTT 59.899 37.500 0.00 0.00 33.72 2.66
252 1106 7.926018 AGCCAACTAATCCAAAAGTTTAAACTG 59.074 33.333 21.22 9.99 39.66 3.16
254 1108 9.030301 CCAACTAATCCAAAAGTTTAAACTGTG 57.970 33.333 21.22 19.80 39.66 3.66
258 1112 9.884465 CTAATCCAAAAGTTTAAACTGTGAGAG 57.116 33.333 21.22 12.31 39.66 3.20
261 1115 7.930217 TCCAAAAGTTTAAACTGTGAGAGATG 58.070 34.615 21.22 9.66 39.66 2.90
263 1117 7.857885 CCAAAAGTTTAAACTGTGAGAGATGAC 59.142 37.037 21.22 0.00 39.66 3.06
264 1118 7.497925 AAAGTTTAAACTGTGAGAGATGACC 57.502 36.000 21.22 0.00 39.66 4.02
266 1120 4.866508 TTAAACTGTGAGAGATGACCGT 57.133 40.909 0.00 0.00 0.00 4.83
275 1129 8.948145 ACTGTGAGAGATGACCGTATATTATAC 58.052 37.037 4.07 4.07 0.00 1.47
276 1130 9.168451 CTGTGAGAGATGACCGTATATTATACT 57.832 37.037 11.15 0.00 0.00 2.12
277 1131 9.163899 TGTGAGAGATGACCGTATATTATACTC 57.836 37.037 11.15 4.76 0.00 2.59
278 1132 8.614346 GTGAGAGATGACCGTATATTATACTCC 58.386 40.741 11.15 2.58 0.00 3.85
279 1133 8.326529 TGAGAGATGACCGTATATTATACTCCA 58.673 37.037 11.15 7.03 0.00 3.86
280 1134 9.175312 GAGAGATGACCGTATATTATACTCCAA 57.825 37.037 11.15 0.00 0.00 3.53
281 1135 8.958506 AGAGATGACCGTATATTATACTCCAAC 58.041 37.037 11.15 5.99 0.00 3.77
282 1136 7.759465 AGATGACCGTATATTATACTCCAACG 58.241 38.462 11.15 0.99 0.00 4.10
286 1140 6.506500 CCGTATATTATACTCCAACGGTCT 57.493 41.667 11.15 0.00 42.50 3.85
287 1141 6.320171 CCGTATATTATACTCCAACGGTCTG 58.680 44.000 11.15 0.00 42.50 3.51
288 1142 5.798934 CGTATATTATACTCCAACGGTCTGC 59.201 44.000 11.15 0.00 0.00 4.26
289 1143 2.572191 TTATACTCCAACGGTCTGCG 57.428 50.000 0.00 0.00 0.00 5.18
290 1144 0.101759 TATACTCCAACGGTCTGCGC 59.898 55.000 0.00 0.00 0.00 6.09
310 1164 0.108804 ATCTACTCGCACAACACGGG 60.109 55.000 0.00 0.00 36.95 5.28
333 1187 0.179018 AAGGTTGTTCTGCCGCTCTT 60.179 50.000 0.00 0.00 0.00 2.85
337 1191 2.143925 GTTGTTCTGCCGCTCTTAGTT 58.856 47.619 0.00 0.00 0.00 2.24
344 1198 0.109735 GCCGCTCTTAGTTTTGGCAC 60.110 55.000 0.00 0.00 42.03 5.01
348 1202 2.414559 CGCTCTTAGTTTTGGCACATGG 60.415 50.000 0.00 0.00 39.30 3.66
376 1230 4.261867 GCCCCCGATATTGTTATTGGTTTC 60.262 45.833 0.00 0.00 37.59 2.78
381 1235 6.418956 CCGATATTGTTATTGGTTTCGTGAG 58.581 40.000 0.00 0.00 35.39 3.51
392 1246 2.471743 GGTTTCGTGAGTAGCGATATGC 59.528 50.000 0.00 0.00 46.98 3.14
421 1275 6.460103 AATATGGCTAGGATCAGTGGAATT 57.540 37.500 0.00 0.00 0.00 2.17
422 1276 7.574021 AATATGGCTAGGATCAGTGGAATTA 57.426 36.000 0.00 0.00 0.00 1.40
423 1277 5.912149 ATGGCTAGGATCAGTGGAATTAA 57.088 39.130 0.00 0.00 0.00 1.40
426 1280 4.822350 GGCTAGGATCAGTGGAATTAAACC 59.178 45.833 0.00 0.00 0.00 3.27
428 1282 4.946160 AGGATCAGTGGAATTAAACCCA 57.054 40.909 0.00 0.00 0.00 4.51
429 1283 5.472301 AGGATCAGTGGAATTAAACCCAT 57.528 39.130 0.00 0.00 34.58 4.00
431 1285 6.980577 AGGATCAGTGGAATTAAACCCATTA 58.019 36.000 0.00 0.00 34.58 1.90
432 1286 7.418378 AGGATCAGTGGAATTAAACCCATTAA 58.582 34.615 0.00 0.00 37.86 1.40
434 1288 6.524101 TCAGTGGAATTAAACCCATTAAGC 57.476 37.500 2.99 0.00 36.94 3.09
436 1290 7.406916 TCAGTGGAATTAAACCCATTAAGCTA 58.593 34.615 2.99 0.00 36.94 3.32
437 1291 7.338449 TCAGTGGAATTAAACCCATTAAGCTAC 59.662 37.037 2.99 0.00 36.94 3.58
438 1292 6.317893 AGTGGAATTAAACCCATTAAGCTACG 59.682 38.462 2.99 0.00 36.94 3.51
439 1293 5.066764 TGGAATTAAACCCATTAAGCTACGC 59.933 40.000 0.00 0.00 36.94 4.42
440 1294 4.806342 ATTAAACCCATTAAGCTACGCG 57.194 40.909 3.53 3.53 36.94 6.01
441 1295 2.103537 AAACCCATTAAGCTACGCGT 57.896 45.000 19.17 19.17 0.00 6.01
442 1296 1.365699 AACCCATTAAGCTACGCGTG 58.634 50.000 24.59 13.17 0.00 5.34
443 1297 0.533491 ACCCATTAAGCTACGCGTGA 59.467 50.000 24.59 5.06 0.00 4.35
444 1298 1.066716 ACCCATTAAGCTACGCGTGAA 60.067 47.619 24.59 8.37 0.00 3.18
445 1299 1.593006 CCCATTAAGCTACGCGTGAAG 59.407 52.381 24.59 13.92 0.00 3.02
446 1300 1.593006 CCATTAAGCTACGCGTGAAGG 59.407 52.381 24.59 10.35 0.00 3.46
447 1301 1.593006 CATTAAGCTACGCGTGAAGGG 59.407 52.381 24.59 7.77 38.93 3.95
448 1302 0.738412 TTAAGCTACGCGTGAAGGGC 60.738 55.000 24.59 17.01 36.05 5.19
457 1311 4.966787 GTGAAGGGCGGCCAACCA 62.967 66.667 31.59 20.58 34.57 3.67
458 1312 4.659172 TGAAGGGCGGCCAACCAG 62.659 66.667 31.59 0.00 34.57 4.00
462 1316 4.506255 GGGCGGCCAACCAGCTAT 62.506 66.667 25.33 0.00 36.24 2.97
463 1317 3.211963 GGCGGCCAACCAGCTATG 61.212 66.667 15.62 0.00 36.24 2.23
464 1318 3.892581 GCGGCCAACCAGCTATGC 61.893 66.667 2.24 0.00 34.11 3.14
465 1319 3.211963 CGGCCAACCAGCTATGCC 61.212 66.667 2.24 0.00 38.74 4.40
466 1320 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
467 1321 1.456331 GGCCAACCAGCTATGCCAT 60.456 57.895 0.00 0.00 41.76 4.40
468 1322 1.737816 GCCAACCAGCTATGCCATG 59.262 57.895 0.00 0.00 0.00 3.66
469 1323 1.039233 GCCAACCAGCTATGCCATGT 61.039 55.000 0.00 0.00 0.00 3.21
470 1324 0.742505 CCAACCAGCTATGCCATGTG 59.257 55.000 0.00 0.00 0.00 3.21
471 1325 0.742505 CAACCAGCTATGCCATGTGG 59.257 55.000 0.00 0.00 38.53 4.17
482 1336 2.941210 CCATGTGGCGTAAACTGGT 58.059 52.632 0.00 0.00 0.00 4.00
483 1337 1.243902 CCATGTGGCGTAAACTGGTT 58.756 50.000 0.00 0.00 0.00 3.67
484 1338 1.068610 CCATGTGGCGTAAACTGGTTG 60.069 52.381 0.00 0.00 0.00 3.77
485 1339 1.068610 CATGTGGCGTAAACTGGTTGG 60.069 52.381 0.00 0.00 0.00 3.77
486 1340 1.284715 GTGGCGTAAACTGGTTGGC 59.715 57.895 0.00 0.00 0.00 4.52
487 1341 1.899534 TGGCGTAAACTGGTTGGCC 60.900 57.895 13.47 13.47 40.88 5.36
488 1342 2.559330 GCGTAAACTGGTTGGCCG 59.441 61.111 0.00 0.00 37.67 6.13
489 1343 2.559330 CGTAAACTGGTTGGCCGC 59.441 61.111 0.00 0.00 37.67 6.53
490 1344 2.255172 CGTAAACTGGTTGGCCGCA 61.255 57.895 0.00 0.00 37.67 5.69
491 1345 1.579429 GTAAACTGGTTGGCCGCAG 59.421 57.895 0.00 0.00 37.67 5.18
492 1346 1.149627 TAAACTGGTTGGCCGCAGT 59.850 52.632 0.00 0.00 37.67 4.40
493 1347 1.169661 TAAACTGGTTGGCCGCAGTG 61.170 55.000 0.00 0.00 37.67 3.66
494 1348 2.902423 AAACTGGTTGGCCGCAGTGA 62.902 55.000 0.00 0.00 37.67 3.41
495 1349 2.594303 CTGGTTGGCCGCAGTGAA 60.594 61.111 0.00 0.00 37.67 3.18
496 1350 2.124109 TGGTTGGCCGCAGTGAAA 60.124 55.556 0.00 0.00 37.67 2.69
497 1351 1.733402 CTGGTTGGCCGCAGTGAAAA 61.733 55.000 0.00 0.00 37.67 2.29
498 1352 1.112315 TGGTTGGCCGCAGTGAAAAT 61.112 50.000 0.00 0.00 37.67 1.82
505 1359 2.061028 GCCGCAGTGAAAATCTTTTGG 58.939 47.619 0.00 0.00 0.00 3.28
508 1362 4.559153 CCGCAGTGAAAATCTTTTGGAAT 58.441 39.130 0.00 0.00 0.00 3.01
509 1363 4.990426 CCGCAGTGAAAATCTTTTGGAATT 59.010 37.500 0.00 0.00 0.00 2.17
511 1365 5.922544 CGCAGTGAAAATCTTTTGGAATTCT 59.077 36.000 5.23 0.00 0.00 2.40
525 1379 9.987272 CTTTTGGAATTCTTTTTAGATGAAGGT 57.013 29.630 5.23 0.00 0.00 3.50
577 1431 7.468141 AAATTTTTAGATGAAGGTGAGGACC 57.532 36.000 0.00 0.00 43.52 4.46
591 1445 6.904463 GGTGAGGACCTTTGGTATTTTTAA 57.096 37.500 0.00 0.00 39.47 1.52
592 1446 7.292713 GGTGAGGACCTTTGGTATTTTTAAA 57.707 36.000 0.00 0.00 39.47 1.52
593 1447 7.903145 GGTGAGGACCTTTGGTATTTTTAAAT 58.097 34.615 0.00 0.00 39.47 1.40
594 1448 7.817478 GGTGAGGACCTTTGGTATTTTTAAATG 59.183 37.037 0.00 0.00 39.47 2.32
595 1449 7.817478 GTGAGGACCTTTGGTATTTTTAAATGG 59.183 37.037 0.00 0.00 35.25 3.16
596 1450 7.730784 TGAGGACCTTTGGTATTTTTAAATGGA 59.269 33.333 0.00 0.00 35.25 3.41
597 1451 8.134202 AGGACCTTTGGTATTTTTAAATGGAG 57.866 34.615 0.00 0.00 35.25 3.86
598 1452 7.180229 AGGACCTTTGGTATTTTTAAATGGAGG 59.820 37.037 0.00 0.00 35.25 4.30
599 1453 7.252612 ACCTTTGGTATTTTTAAATGGAGGG 57.747 36.000 0.00 0.00 32.11 4.30
600 1454 6.790461 ACCTTTGGTATTTTTAAATGGAGGGT 59.210 34.615 0.00 0.00 32.11 4.34
601 1455 7.293771 ACCTTTGGTATTTTTAAATGGAGGGTT 59.706 33.333 0.00 0.00 32.11 4.11
602 1456 8.817876 CCTTTGGTATTTTTAAATGGAGGGTTA 58.182 33.333 0.00 0.00 0.00 2.85
605 1459 7.787028 TGGTATTTTTAAATGGAGGGTTATGC 58.213 34.615 0.00 0.00 0.00 3.14
606 1460 7.400339 TGGTATTTTTAAATGGAGGGTTATGCA 59.600 33.333 0.00 0.00 0.00 3.96
607 1461 8.261522 GGTATTTTTAAATGGAGGGTTATGCAA 58.738 33.333 0.00 0.00 0.00 4.08
608 1462 9.660180 GTATTTTTAAATGGAGGGTTATGCAAA 57.340 29.630 0.00 0.00 0.00 3.68
610 1464 9.752228 ATTTTTAAATGGAGGGTTATGCAAAAT 57.248 25.926 0.00 0.00 0.00 1.82
611 1465 8.558973 TTTTAAATGGAGGGTTATGCAAAATG 57.441 30.769 0.00 0.00 0.00 2.32
612 1466 4.758773 AATGGAGGGTTATGCAAAATGG 57.241 40.909 0.00 0.00 0.00 3.16
613 1467 1.830477 TGGAGGGTTATGCAAAATGGC 59.170 47.619 0.00 0.00 0.00 4.40
620 1474 2.254951 TGCAAAATGGCACTCGCG 59.745 55.556 0.00 0.00 39.25 5.87
621 1475 2.504681 GCAAAATGGCACTCGCGG 60.505 61.111 6.13 0.00 39.92 6.46
622 1476 2.976840 GCAAAATGGCACTCGCGGA 61.977 57.895 6.13 0.00 39.92 5.54
623 1477 1.802636 CAAAATGGCACTCGCGGAT 59.197 52.632 6.13 0.00 39.92 4.18
624 1478 1.013596 CAAAATGGCACTCGCGGATA 58.986 50.000 6.13 0.00 39.92 2.59
625 1479 1.003545 CAAAATGGCACTCGCGGATAG 60.004 52.381 6.13 0.00 39.92 2.08
626 1480 0.532862 AAATGGCACTCGCGGATAGG 60.533 55.000 6.13 0.00 39.92 2.57
627 1481 2.996168 AATGGCACTCGCGGATAGGC 62.996 60.000 6.13 7.33 39.92 3.93
628 1482 3.917760 GGCACTCGCGGATAGGCT 61.918 66.667 6.13 0.00 39.92 4.58
629 1483 2.659897 GCACTCGCGGATAGGCTG 60.660 66.667 6.13 0.00 0.00 4.85
630 1484 2.659897 CACTCGCGGATAGGCTGC 60.660 66.667 6.13 0.00 45.70 5.25
636 1490 3.849951 CGGATAGGCTGCGGTGGT 61.850 66.667 0.00 0.00 34.67 4.16
637 1491 2.495409 CGGATAGGCTGCGGTGGTA 61.495 63.158 0.00 0.00 34.67 3.25
638 1492 1.816863 CGGATAGGCTGCGGTGGTAT 61.817 60.000 0.00 0.00 34.67 2.73
639 1493 0.396811 GGATAGGCTGCGGTGGTATT 59.603 55.000 0.00 0.00 0.00 1.89
640 1494 1.202770 GGATAGGCTGCGGTGGTATTT 60.203 52.381 0.00 0.00 0.00 1.40
641 1495 2.572290 GATAGGCTGCGGTGGTATTTT 58.428 47.619 0.00 0.00 0.00 1.82
642 1496 2.500392 TAGGCTGCGGTGGTATTTTT 57.500 45.000 0.00 0.00 0.00 1.94
683 1537 8.884124 TTTTTCTGATGAAGGTGAGGATTTAT 57.116 30.769 0.00 0.00 33.28 1.40
684 1538 8.884124 TTTTCTGATGAAGGTGAGGATTTATT 57.116 30.769 0.00 0.00 33.28 1.40
685 1539 9.973661 TTTTCTGATGAAGGTGAGGATTTATTA 57.026 29.630 0.00 0.00 33.28 0.98
686 1540 9.973661 TTTCTGATGAAGGTGAGGATTTATTAA 57.026 29.630 0.00 0.00 33.28 1.40
687 1541 9.618890 TTCTGATGAAGGTGAGGATTTATTAAG 57.381 33.333 0.00 0.00 0.00 1.85
688 1542 8.992349 TCTGATGAAGGTGAGGATTTATTAAGA 58.008 33.333 0.00 0.00 0.00 2.10
689 1543 9.790344 CTGATGAAGGTGAGGATTTATTAAGAT 57.210 33.333 0.00 0.00 0.00 2.40
715 1569 5.668558 TTTTTAGACAAAAGCGAGGACTC 57.331 39.130 0.00 0.00 35.15 3.36
716 1570 4.602340 TTTAGACAAAAGCGAGGACTCT 57.398 40.909 0.00 0.00 0.00 3.24
717 1571 5.717078 TTTAGACAAAAGCGAGGACTCTA 57.283 39.130 0.00 0.00 0.00 2.43
718 1572 5.916661 TTAGACAAAAGCGAGGACTCTAT 57.083 39.130 0.00 0.00 0.00 1.98
719 1573 7.400599 TTTAGACAAAAGCGAGGACTCTATA 57.599 36.000 0.00 0.00 0.00 1.31
720 1574 7.584122 TTAGACAAAAGCGAGGACTCTATAT 57.416 36.000 0.00 0.00 0.00 0.86
721 1575 8.687292 TTAGACAAAAGCGAGGACTCTATATA 57.313 34.615 0.00 0.00 0.00 0.86
722 1576 7.768807 AGACAAAAGCGAGGACTCTATATAT 57.231 36.000 0.00 0.00 0.00 0.86
723 1577 8.184304 AGACAAAAGCGAGGACTCTATATATT 57.816 34.615 0.00 0.00 0.00 1.28
724 1578 8.643324 AGACAAAAGCGAGGACTCTATATATTT 58.357 33.333 0.00 0.00 0.00 1.40
725 1579 9.262358 GACAAAAGCGAGGACTCTATATATTTT 57.738 33.333 0.00 0.00 0.00 1.82
726 1580 9.614792 ACAAAAGCGAGGACTCTATATATTTTT 57.385 29.630 0.00 0.00 0.00 1.94
769 1623 3.744559 TTTTTCTCAAGCGGCGCT 58.255 50.000 31.35 31.35 42.56 5.92
770 1624 2.921374 TTTTTCTCAAGCGGCGCTA 58.079 47.368 36.59 20.13 38.25 4.26
771 1625 0.515564 TTTTTCTCAAGCGGCGCTAC 59.484 50.000 36.59 4.51 38.25 3.58
772 1626 0.601576 TTTTCTCAAGCGGCGCTACA 60.602 50.000 36.59 22.80 38.25 2.74
773 1627 1.014044 TTTCTCAAGCGGCGCTACAG 61.014 55.000 36.59 30.32 38.25 2.74
774 1628 1.873270 TTCTCAAGCGGCGCTACAGA 61.873 55.000 36.59 31.97 38.25 3.41
775 1629 1.875813 CTCAAGCGGCGCTACAGAG 60.876 63.158 36.59 32.76 38.25 3.35
776 1630 2.125912 CAAGCGGCGCTACAGAGT 60.126 61.111 36.59 16.15 38.25 3.24
777 1631 1.138883 CAAGCGGCGCTACAGAGTA 59.861 57.895 36.59 0.00 38.25 2.59
778 1632 0.457853 CAAGCGGCGCTACAGAGTAA 60.458 55.000 36.59 0.00 38.25 2.24
779 1633 0.458025 AAGCGGCGCTACAGAGTAAC 60.458 55.000 36.59 0.00 38.25 2.50
780 1634 2.222217 GCGGCGCTACAGAGTAACG 61.222 63.158 26.86 0.00 0.00 3.18
782 1636 3.689411 GCGCTACAGAGTAACGCC 58.311 61.111 12.40 0.00 43.58 5.68
783 1637 1.877165 GCGCTACAGAGTAACGCCC 60.877 63.158 12.40 0.00 43.58 6.13
784 1638 1.226888 CGCTACAGAGTAACGCCCC 60.227 63.158 0.00 0.00 0.00 5.80
785 1639 1.895238 GCTACAGAGTAACGCCCCA 59.105 57.895 0.00 0.00 0.00 4.96
786 1640 0.248289 GCTACAGAGTAACGCCCCAA 59.752 55.000 0.00 0.00 0.00 4.12
787 1641 2.005560 GCTACAGAGTAACGCCCCAAC 61.006 57.143 0.00 0.00 0.00 3.77
788 1642 0.609662 TACAGAGTAACGCCCCAACC 59.390 55.000 0.00 0.00 0.00 3.77
789 1643 1.373435 CAGAGTAACGCCCCAACCA 59.627 57.895 0.00 0.00 0.00 3.67
790 1644 0.953960 CAGAGTAACGCCCCAACCAC 60.954 60.000 0.00 0.00 0.00 4.16
791 1645 1.125711 AGAGTAACGCCCCAACCACT 61.126 55.000 0.00 0.00 0.00 4.00
792 1646 0.609662 GAGTAACGCCCCAACCACTA 59.390 55.000 0.00 0.00 0.00 2.74
793 1647 0.611714 AGTAACGCCCCAACCACTAG 59.388 55.000 0.00 0.00 0.00 2.57
838 1692 4.508662 AGGAGAATTCCAGACAATTCGAC 58.491 43.478 0.65 0.00 46.64 4.20
896 1751 7.093068 GGCCTAATTCTTCCCCAATTCTAAAAA 60.093 37.037 0.00 0.00 0.00 1.94
914 1769 2.830651 AACTCCCCGTCTCTAGACAT 57.169 50.000 10.55 0.00 44.99 3.06
915 1770 2.351706 ACTCCCCGTCTCTAGACATC 57.648 55.000 10.55 0.00 44.99 3.06
916 1771 1.564818 ACTCCCCGTCTCTAGACATCA 59.435 52.381 10.55 0.00 44.99 3.07
917 1772 2.226330 CTCCCCGTCTCTAGACATCAG 58.774 57.143 10.55 0.00 44.99 2.90
918 1773 1.564818 TCCCCGTCTCTAGACATCAGT 59.435 52.381 10.55 0.00 44.99 3.41
919 1774 2.025226 TCCCCGTCTCTAGACATCAGTT 60.025 50.000 10.55 0.00 44.99 3.16
1731 2608 7.842982 ACATCTATGAGATCTTGATGGATGAG 58.157 38.462 29.35 16.15 38.88 2.90
1827 2704 2.224670 TGGGTCCATCACAGGTGTTAAC 60.225 50.000 0.00 0.00 0.00 2.01
1917 2794 7.982354 GTCCATTCTACAGTAAGTTCTATGCTT 59.018 37.037 0.00 0.00 0.00 3.91
1934 2811 9.851686 TTCTATGCTTAAAGACATCATTATGGT 57.148 29.630 0.00 0.00 37.43 3.55
1961 2838 5.067153 TGTGCTTGCTTGTGTTATGTAGTTT 59.933 36.000 0.00 0.00 0.00 2.66
1976 2853 0.107268 AGTTTTACCGCTCCACCGTT 59.893 50.000 0.00 0.00 0.00 4.44
1994 2871 4.243270 CCGTTCGGTATTTGATAGGGATC 58.757 47.826 2.82 0.00 0.00 3.36
1999 2876 5.342017 TCGGTATTTGATAGGGATCCATCT 58.658 41.667 15.23 4.81 0.00 2.90
2029 2906 7.542025 GGTATTTGATAGGGATGCATGAAATC 58.458 38.462 2.46 2.47 0.00 2.17
2128 3005 8.813643 ATTATTACTTCCATACAGTTAGACGC 57.186 34.615 0.00 0.00 0.00 5.19
2151 3028 0.252197 GGTAAGAACGGGCCATCTGT 59.748 55.000 4.39 0.00 36.31 3.41
2272 3310 3.395639 AGCACCATGTTCAGCAAAAATG 58.604 40.909 0.00 0.00 0.00 2.32
2303 3341 6.057533 TCTAGTATGGCATTTGAGGTTGATG 58.942 40.000 4.78 0.00 0.00 3.07
2366 3404 9.734620 GATGAGAGGAGAGATTTTCATATATCG 57.265 37.037 0.00 0.00 0.00 2.92
2383 3421 8.817876 TCATATATCGTACCAATTACCATGGAA 58.182 33.333 21.47 8.96 40.56 3.53
2386 3424 6.877611 ATCGTACCAATTACCATGGAAATC 57.122 37.500 21.47 0.00 40.56 2.17
2389 3427 6.540914 TCGTACCAATTACCATGGAAATCTTC 59.459 38.462 21.47 0.19 40.56 2.87
2390 3428 5.835113 ACCAATTACCATGGAAATCTTCG 57.165 39.130 21.47 0.85 40.56 3.79
2471 3514 5.815581 TGTCTACCTGTTGCCATAGAATTT 58.184 37.500 0.00 0.00 0.00 1.82
2472 3515 6.245408 TGTCTACCTGTTGCCATAGAATTTT 58.755 36.000 0.00 0.00 0.00 1.82
2485 3528 7.552687 TGCCATAGAATTTTAGTCTGTTACCAG 59.447 37.037 0.00 0.00 40.25 4.00
2536 3579 7.741785 TGAGTCCAGTCTACCATTTTTAGAAA 58.258 34.615 0.00 0.00 0.00 2.52
2579 3622 9.911788 AGAATGGTTTCACTTCATATTGTATCT 57.088 29.630 0.00 0.00 34.08 1.98
2701 3746 2.111384 TCAAGGGATGTCAGAGTAGCC 58.889 52.381 0.00 0.00 0.00 3.93
2708 3753 0.969149 TGTCAGAGTAGCCACAGTGG 59.031 55.000 16.16 16.16 41.55 4.00
2733 3778 3.873801 GCCTAACATTCCTTCCTTGCAGA 60.874 47.826 0.00 0.00 0.00 4.26
2775 3820 8.884124 AATATGCATATGGTTATTTGCCTACT 57.116 30.769 19.77 0.00 39.57 2.57
2811 3856 6.349300 TCTTTTCCTAGCTGCCTTACTAATG 58.651 40.000 0.00 0.00 0.00 1.90
2849 3895 3.531934 GCTTGGCCAGCTGATATTTTT 57.468 42.857 17.39 0.00 46.27 1.94
3016 4062 2.093921 GCCAGAGGAAGACAGGTACTTC 60.094 54.545 0.00 0.00 41.79 3.01
3226 4272 6.040729 TCTGAAAAAGCATCTTTGACATCCAA 59.959 34.615 0.00 0.00 0.00 3.53
3349 4398 7.327518 GGGAATTGAAAAATACGTGTTACCTTG 59.672 37.037 0.00 0.00 0.00 3.61
3350 4399 7.863877 GGAATTGAAAAATACGTGTTACCTTGT 59.136 33.333 0.00 0.00 0.00 3.16
3351 4400 9.881529 GAATTGAAAAATACGTGTTACCTTGTA 57.118 29.630 0.00 0.00 0.00 2.41
3352 4401 9.667989 AATTGAAAAATACGTGTTACCTTGTAC 57.332 29.630 0.00 0.00 0.00 2.90
3353 4402 7.783090 TGAAAAATACGTGTTACCTTGTACA 57.217 32.000 0.00 0.00 0.00 2.90
3379 4428 1.237285 ATCACGCTGGGTTGTGCTTC 61.237 55.000 0.00 0.00 36.06 3.86
3393 4442 0.039437 TGCTTCGAAGTCGTCACTCC 60.039 55.000 25.24 6.84 40.80 3.85
3403 4452 4.138487 AGTCGTCACTCCTGAAAGTTTT 57.862 40.909 0.00 0.00 0.00 2.43
3404 4453 3.871594 AGTCGTCACTCCTGAAAGTTTTG 59.128 43.478 0.00 0.00 0.00 2.44
3455 4504 2.941453 TGGTCGCTGAGTGACTATTC 57.059 50.000 23.55 9.26 42.03 1.75
3472 4521 6.144078 ACTATTCTTTTTGTTCCTTGCGTT 57.856 33.333 0.00 0.00 0.00 4.84
3498 4547 9.693739 TTGTATGACATGGTACCAGATAAATTT 57.306 29.630 21.41 0.00 0.00 1.82
3530 4579 4.521130 TCTAGTTCTACAAGCACCACTG 57.479 45.455 0.00 0.00 0.00 3.66
3546 4595 3.606065 CTGCGAGTGCTGCTTTGCC 62.606 63.158 0.00 0.00 43.34 4.52
3578 4627 6.412653 TCGTGAAAAACTTCGAAAATAAGTGC 59.587 34.615 0.00 0.00 37.26 4.40
3641 4692 6.346096 CACTTTAAATTCCATCCTCGACCTA 58.654 40.000 0.00 0.00 0.00 3.08
3670 4721 6.716628 ACACAGTTTCATGTTACCATCAAGAT 59.283 34.615 0.00 0.00 0.00 2.40
3676 4727 8.299570 GTTTCATGTTACCATCAAGATGAGTTT 58.700 33.333 11.48 0.00 38.82 2.66
3677 4728 8.408043 TTCATGTTACCATCAAGATGAGTTTT 57.592 30.769 11.48 0.00 38.82 2.43
3697 4748 9.922305 GAGTTTTCATTATAGACGATTTGAAGG 57.078 33.333 0.00 0.00 0.00 3.46
3717 4872 1.265462 TTTTTGCGCGACGTTGCATC 61.265 50.000 26.71 17.54 41.42 3.91
3718 4873 2.380304 TTTTGCGCGACGTTGCATCA 62.380 50.000 26.71 19.79 41.42 3.07
3719 4874 2.181372 TTTGCGCGACGTTGCATCAT 62.181 50.000 26.71 0.00 41.42 2.45
3721 4876 1.366494 GCGCGACGTTGCATCATAC 60.366 57.895 26.71 5.50 34.15 2.39
3724 4879 1.331161 CGCGACGTTGCATCATACTTC 60.331 52.381 26.71 0.00 34.15 3.01
3733 4929 5.497439 CGTTGCATCATACTTCGCAAAAATG 60.497 40.000 0.00 0.00 45.19 2.32
3764 4960 0.470766 TGGTGGTTTGCTCTACCGTT 59.529 50.000 0.00 0.00 41.00 4.44
3767 4963 1.529865 GTGGTTTGCTCTACCGTTGAC 59.470 52.381 0.00 0.00 38.55 3.18
3811 5030 2.915738 ACGTTGGCTCTAAGACGTAG 57.084 50.000 0.00 0.00 45.68 3.51
3848 5067 1.348036 CCTTTTGTCTTCTCCTCCCGT 59.652 52.381 0.00 0.00 0.00 5.28
3862 5081 2.186644 CCGTGATGGCATGTCCGA 59.813 61.111 3.81 0.00 37.80 4.55
3863 5082 1.227645 CCGTGATGGCATGTCCGAT 60.228 57.895 3.81 0.00 37.80 4.18
3864 5083 0.815213 CCGTGATGGCATGTCCGATT 60.815 55.000 3.81 0.00 37.80 3.34
3865 5084 0.583438 CGTGATGGCATGTCCGATTC 59.417 55.000 3.81 0.00 37.80 2.52
3866 5085 0.583438 GTGATGGCATGTCCGATTCG 59.417 55.000 3.81 0.00 37.80 3.34
3876 5095 3.712907 CCGATTCGGTGGGGTGGT 61.713 66.667 17.08 0.00 42.73 4.16
3877 5096 2.349755 CGATTCGGTGGGGTGGTT 59.650 61.111 0.00 0.00 0.00 3.67
3878 5097 2.038269 CGATTCGGTGGGGTGGTTG 61.038 63.158 0.00 0.00 0.00 3.77
3879 5098 1.074248 GATTCGGTGGGGTGGTTGT 59.926 57.895 0.00 0.00 0.00 3.32
3880 5099 1.228429 ATTCGGTGGGGTGGTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
3881 5100 2.002018 ATTCGGTGGGGTGGTTGTGT 62.002 55.000 0.00 0.00 0.00 3.72
3882 5101 2.593436 CGGTGGGGTGGTTGTGTC 60.593 66.667 0.00 0.00 0.00 3.67
3883 5102 2.203437 GGTGGGGTGGTTGTGTCC 60.203 66.667 0.00 0.00 0.00 4.02
3944 5163 4.304048 TTCTCTAGAACGGAAGAGGAGT 57.696 45.455 0.00 0.00 39.79 3.85
3949 5168 1.827399 GAACGGAAGAGGAGTGGCCA 61.827 60.000 0.00 0.00 40.02 5.36
4013 5232 3.274288 GAATCCCTCTTTCATCGCAACT 58.726 45.455 0.00 0.00 0.00 3.16
4055 5274 0.609131 CTCCGGTCAAGGGCATTTGT 60.609 55.000 0.00 0.00 0.00 2.83
4066 5285 1.378531 GGCATTTGTAGGTCATCGCA 58.621 50.000 0.00 0.00 0.00 5.10
4189 5408 2.286772 CCTTTGTTTTTGTCGTCCTCGG 60.287 50.000 0.00 0.00 37.69 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.259625 GGAGTATAATGTCTGGCCCTCTC 59.740 52.174 0.00 0.00 0.00 3.20
17 18 5.703130 GGAGAATTGGAGTATAATGTCTGGC 59.297 44.000 0.00 0.00 0.00 4.85
20 21 6.846505 TGAGGGAGAATTGGAGTATAATGTCT 59.153 38.462 0.00 0.00 0.00 3.41
23 24 7.456725 ACATGAGGGAGAATTGGAGTATAATG 58.543 38.462 0.00 0.00 0.00 1.90
33 34 4.970711 AGCATAGACATGAGGGAGAATTG 58.029 43.478 0.00 0.00 33.67 2.32
40 41 3.881688 CCAAAGAAGCATAGACATGAGGG 59.118 47.826 0.00 0.00 33.67 4.30
74 75 4.082523 CTCCGCTTCCGCTTCCCA 62.083 66.667 0.00 0.00 0.00 4.37
75 76 3.771160 TCTCCGCTTCCGCTTCCC 61.771 66.667 0.00 0.00 0.00 3.97
76 77 2.509561 GTCTCCGCTTCCGCTTCC 60.510 66.667 0.00 0.00 0.00 3.46
77 78 1.807573 CTGTCTCCGCTTCCGCTTC 60.808 63.158 0.00 0.00 0.00 3.86
78 79 2.262915 CTGTCTCCGCTTCCGCTT 59.737 61.111 0.00 0.00 0.00 4.68
79 80 3.764466 CCTGTCTCCGCTTCCGCT 61.764 66.667 0.00 0.00 0.00 5.52
81 82 4.821589 GGCCTGTCTCCGCTTCCG 62.822 72.222 0.00 0.00 0.00 4.30
90 91 6.490040 ACATAATAAATAATTGCGGCCTGTCT 59.510 34.615 0.00 0.00 0.00 3.41
92 93 6.490040 AGACATAATAAATAATTGCGGCCTGT 59.510 34.615 0.00 0.00 0.00 4.00
95 96 8.040716 AGTAGACATAATAAATAATTGCGGCC 57.959 34.615 0.00 0.00 0.00 6.13
114 115 6.157904 GGTTCAGAGTCAAAACCTAGTAGAC 58.842 44.000 15.78 0.00 39.48 2.59
123 124 6.706270 TCACATCTAAGGTTCAGAGTCAAAAC 59.294 38.462 0.00 0.00 0.00 2.43
128 129 5.906113 TCTCACATCTAAGGTTCAGAGTC 57.094 43.478 0.00 0.00 0.00 3.36
134 135 5.757320 CCACATCATCTCACATCTAAGGTTC 59.243 44.000 0.00 0.00 0.00 3.62
137 138 4.639334 CCCACATCATCTCACATCTAAGG 58.361 47.826 0.00 0.00 0.00 2.69
139 140 3.181451 GGCCCACATCATCTCACATCTAA 60.181 47.826 0.00 0.00 0.00 2.10
140 141 2.369860 GGCCCACATCATCTCACATCTA 59.630 50.000 0.00 0.00 0.00 1.98
141 142 1.142465 GGCCCACATCATCTCACATCT 59.858 52.381 0.00 0.00 0.00 2.90
143 144 0.179037 CGGCCCACATCATCTCACAT 60.179 55.000 0.00 0.00 0.00 3.21
157 1010 2.455674 AAAGAAAGATTTTGCGGCCC 57.544 45.000 0.00 0.00 0.00 5.80
160 1013 8.183830 TGCAATATTAAAGAAAGATTTTGCGG 57.816 30.769 0.00 0.00 39.20 5.69
181 1034 9.725565 ATTGAGTTCAAGACTTTGCCAATGCAA 62.726 37.037 0.00 0.00 46.60 4.08
193 1046 5.106555 CCAACGCATTATTGAGTTCAAGACT 60.107 40.000 4.08 0.00 42.95 3.24
216 1069 1.305219 TTAGTTGGCTGCATCGTGCC 61.305 55.000 7.73 7.73 44.23 5.01
224 1078 3.942130 ACTTTTGGATTAGTTGGCTGC 57.058 42.857 0.00 0.00 0.00 5.25
228 1082 9.030301 CACAGTTTAAACTTTTGGATTAGTTGG 57.970 33.333 18.25 4.79 37.08 3.77
246 1100 7.818997 ATATACGGTCATCTCTCACAGTTTA 57.181 36.000 0.00 0.00 0.00 2.01
252 1106 8.614346 GGAGTATAATATACGGTCATCTCTCAC 58.386 40.741 4.92 0.00 0.00 3.51
254 1108 8.734218 TGGAGTATAATATACGGTCATCTCTC 57.266 38.462 4.92 0.00 0.00 3.20
258 1112 6.971184 CCGTTGGAGTATAATATACGGTCATC 59.029 42.308 4.92 0.00 41.40 2.92
264 1118 5.798934 GCAGACCGTTGGAGTATAATATACG 59.201 44.000 4.92 0.00 0.00 3.06
266 1120 5.620654 GCGCAGACCGTTGGAGTATAATATA 60.621 44.000 0.30 0.00 39.71 0.86
275 1129 2.434884 ATGCGCAGACCGTTGGAG 60.435 61.111 18.32 0.00 39.71 3.86
276 1130 1.600511 TAGATGCGCAGACCGTTGGA 61.601 55.000 18.32 0.00 39.71 3.53
277 1131 1.153647 TAGATGCGCAGACCGTTGG 60.154 57.895 18.32 0.00 39.71 3.77
278 1132 0.458543 AGTAGATGCGCAGACCGTTG 60.459 55.000 18.32 0.00 39.71 4.10
279 1133 0.179134 GAGTAGATGCGCAGACCGTT 60.179 55.000 18.32 0.00 39.71 4.44
280 1134 1.433879 GAGTAGATGCGCAGACCGT 59.566 57.895 18.32 0.00 39.71 4.83
281 1135 1.655654 CGAGTAGATGCGCAGACCG 60.656 63.158 18.32 14.51 40.75 4.79
282 1136 4.310672 CGAGTAGATGCGCAGACC 57.689 61.111 18.32 7.74 0.00 3.85
288 1142 0.366871 GTGTTGTGCGAGTAGATGCG 59.633 55.000 0.00 0.00 0.00 4.73
289 1143 0.366871 CGTGTTGTGCGAGTAGATGC 59.633 55.000 0.00 0.00 0.00 3.91
290 1144 0.992072 CCGTGTTGTGCGAGTAGATG 59.008 55.000 0.00 0.00 0.00 2.90
310 1164 1.576421 CGGCAGAACAACCTTCAGC 59.424 57.895 0.00 0.00 0.00 4.26
333 1187 0.538516 ACCGCCATGTGCCAAAACTA 60.539 50.000 0.00 0.00 36.24 2.24
358 1212 7.000575 ACTCACGAAACCAATAACAATATCG 57.999 36.000 0.00 0.00 35.36 2.92
361 1215 6.035220 CGCTACTCACGAAACCAATAACAATA 59.965 38.462 0.00 0.00 0.00 1.90
376 1230 4.514545 TTTTTGCATATCGCTACTCACG 57.485 40.909 0.00 0.00 43.06 4.35
396 1250 5.912149 TCCACTGATCCTAGCCATATTTT 57.088 39.130 0.00 0.00 0.00 1.82
397 1251 5.912149 TTCCACTGATCCTAGCCATATTT 57.088 39.130 0.00 0.00 0.00 1.40
399 1253 7.574021 TTAATTCCACTGATCCTAGCCATAT 57.426 36.000 0.00 0.00 0.00 1.78
400 1254 7.224297 GTTTAATTCCACTGATCCTAGCCATA 58.776 38.462 0.00 0.00 0.00 2.74
401 1255 5.912149 TTAATTCCACTGATCCTAGCCAT 57.088 39.130 0.00 0.00 0.00 4.40
402 1256 5.437060 GTTTAATTCCACTGATCCTAGCCA 58.563 41.667 0.00 0.00 0.00 4.75
403 1257 4.822350 GGTTTAATTCCACTGATCCTAGCC 59.178 45.833 0.00 0.00 0.00 3.93
404 1258 4.822350 GGGTTTAATTCCACTGATCCTAGC 59.178 45.833 0.00 0.00 0.00 3.42
405 1259 6.001449 TGGGTTTAATTCCACTGATCCTAG 57.999 41.667 0.00 0.00 0.00 3.02
406 1260 6.590656 ATGGGTTTAATTCCACTGATCCTA 57.409 37.500 0.11 0.00 35.67 2.94
410 1264 6.897413 AGCTTAATGGGTTTAATTCCACTGAT 59.103 34.615 0.11 0.00 35.67 2.90
412 1266 6.530019 AGCTTAATGGGTTTAATTCCACTG 57.470 37.500 0.11 0.00 35.67 3.66
440 1294 4.966787 TGGTTGGCCGCCCTTCAC 62.967 66.667 7.03 0.00 37.67 3.18
441 1295 4.659172 CTGGTTGGCCGCCCTTCA 62.659 66.667 7.03 1.26 37.67 3.02
445 1299 4.506255 ATAGCTGGTTGGCCGCCC 62.506 66.667 7.03 8.51 37.67 6.13
446 1300 3.211963 CATAGCTGGTTGGCCGCC 61.212 66.667 1.04 1.04 37.67 6.13
447 1301 3.892581 GCATAGCTGGTTGGCCGC 61.893 66.667 0.00 0.00 37.67 6.53
448 1302 3.211963 GGCATAGCTGGTTGGCCG 61.212 66.667 0.00 0.00 37.67 6.13
449 1303 1.456331 ATGGCATAGCTGGTTGGCC 60.456 57.895 0.00 12.70 44.82 5.36
450 1304 1.039233 ACATGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
451 1305 0.742505 CACATGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
452 1306 0.742505 CCACATGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
453 1307 3.196040 CCACATGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
454 1308 4.993307 CCACATGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
464 1318 1.068610 CAACCAGTTTACGCCACATGG 60.069 52.381 0.00 0.00 38.53 3.66
465 1319 1.068610 CCAACCAGTTTACGCCACATG 60.069 52.381 0.00 0.00 0.00 3.21
466 1320 1.243902 CCAACCAGTTTACGCCACAT 58.756 50.000 0.00 0.00 0.00 3.21
467 1321 1.448922 GCCAACCAGTTTACGCCACA 61.449 55.000 0.00 0.00 0.00 4.17
468 1322 1.284715 GCCAACCAGTTTACGCCAC 59.715 57.895 0.00 0.00 0.00 5.01
469 1323 1.899534 GGCCAACCAGTTTACGCCA 60.900 57.895 0.00 0.00 36.38 5.69
470 1324 2.959372 GGCCAACCAGTTTACGCC 59.041 61.111 0.00 0.00 35.26 5.68
471 1325 2.559330 CGGCCAACCAGTTTACGC 59.441 61.111 2.24 0.00 34.57 4.42
472 1326 2.182614 CTGCGGCCAACCAGTTTACG 62.183 60.000 2.24 0.00 34.57 3.18
473 1327 1.170290 ACTGCGGCCAACCAGTTTAC 61.170 55.000 13.30 0.00 39.11 2.01
474 1328 1.149627 ACTGCGGCCAACCAGTTTA 59.850 52.632 13.30 0.00 39.11 2.01
475 1329 2.123897 ACTGCGGCCAACCAGTTT 60.124 55.556 13.30 0.00 39.11 2.66
476 1330 2.902423 TTCACTGCGGCCAACCAGTT 62.902 55.000 15.72 2.39 40.12 3.16
477 1331 2.902423 TTTCACTGCGGCCAACCAGT 62.902 55.000 13.30 13.30 42.67 4.00
478 1332 1.733402 TTTTCACTGCGGCCAACCAG 61.733 55.000 2.24 8.59 34.57 4.00
479 1333 1.112315 ATTTTCACTGCGGCCAACCA 61.112 50.000 2.24 0.00 34.57 3.67
480 1334 0.388520 GATTTTCACTGCGGCCAACC 60.389 55.000 2.24 0.00 0.00 3.77
481 1335 0.598065 AGATTTTCACTGCGGCCAAC 59.402 50.000 2.24 0.00 0.00 3.77
482 1336 1.327303 AAGATTTTCACTGCGGCCAA 58.673 45.000 2.24 0.00 0.00 4.52
483 1337 1.327303 AAAGATTTTCACTGCGGCCA 58.673 45.000 2.24 0.00 0.00 5.36
484 1338 2.061028 CAAAAGATTTTCACTGCGGCC 58.939 47.619 0.00 0.00 0.00 6.13
485 1339 2.061028 CCAAAAGATTTTCACTGCGGC 58.939 47.619 0.00 0.00 0.00 6.53
486 1340 3.641437 TCCAAAAGATTTTCACTGCGG 57.359 42.857 0.00 0.00 0.00 5.69
487 1341 5.922544 AGAATTCCAAAAGATTTTCACTGCG 59.077 36.000 0.65 0.00 0.00 5.18
488 1342 7.719778 AAGAATTCCAAAAGATTTTCACTGC 57.280 32.000 0.65 0.00 0.00 4.40
551 1405 9.020731 GGTCCTCACCTTCATCTAAAAATTTAA 57.979 33.333 0.00 0.00 40.00 1.52
552 1406 8.575649 GGTCCTCACCTTCATCTAAAAATTTA 57.424 34.615 0.00 0.00 40.00 1.40
553 1407 7.468141 GGTCCTCACCTTCATCTAAAAATTT 57.532 36.000 0.00 0.00 40.00 1.82
568 1422 6.904463 TTAAAAATACCAAAGGTCCTCACC 57.096 37.500 0.00 0.00 44.19 4.02
569 1423 7.817478 CCATTTAAAAATACCAAAGGTCCTCAC 59.183 37.037 0.00 0.00 37.09 3.51
570 1424 7.730784 TCCATTTAAAAATACCAAAGGTCCTCA 59.269 33.333 0.00 0.00 37.09 3.86
571 1425 8.129496 TCCATTTAAAAATACCAAAGGTCCTC 57.871 34.615 0.00 0.00 37.09 3.71
573 1427 7.327975 CCTCCATTTAAAAATACCAAAGGTCC 58.672 38.462 0.00 0.00 37.09 4.46
574 1428 7.038587 ACCCTCCATTTAAAAATACCAAAGGTC 60.039 37.037 0.00 0.00 37.09 3.85
576 1430 7.252612 ACCCTCCATTTAAAAATACCAAAGG 57.747 36.000 0.00 0.00 0.00 3.11
579 1433 8.261522 GCATAACCCTCCATTTAAAAATACCAA 58.738 33.333 0.00 0.00 0.00 3.67
580 1434 7.400339 TGCATAACCCTCCATTTAAAAATACCA 59.600 33.333 0.00 0.00 0.00 3.25
581 1435 7.787028 TGCATAACCCTCCATTTAAAAATACC 58.213 34.615 0.00 0.00 0.00 2.73
582 1436 9.660180 TTTGCATAACCCTCCATTTAAAAATAC 57.340 29.630 0.00 0.00 0.00 1.89
585 1439 9.007901 CATTTTGCATAACCCTCCATTTAAAAA 57.992 29.630 0.00 0.00 0.00 1.94
586 1440 7.609532 CCATTTTGCATAACCCTCCATTTAAAA 59.390 33.333 0.00 0.00 0.00 1.52
587 1441 7.108847 CCATTTTGCATAACCCTCCATTTAAA 58.891 34.615 0.00 0.00 0.00 1.52
588 1442 6.648192 CCATTTTGCATAACCCTCCATTTAA 58.352 36.000 0.00 0.00 0.00 1.52
589 1443 5.396213 GCCATTTTGCATAACCCTCCATTTA 60.396 40.000 0.00 0.00 0.00 1.40
590 1444 4.626046 GCCATTTTGCATAACCCTCCATTT 60.626 41.667 0.00 0.00 0.00 2.32
591 1445 3.118298 GCCATTTTGCATAACCCTCCATT 60.118 43.478 0.00 0.00 0.00 3.16
592 1446 2.435437 GCCATTTTGCATAACCCTCCAT 59.565 45.455 0.00 0.00 0.00 3.41
593 1447 1.830477 GCCATTTTGCATAACCCTCCA 59.170 47.619 0.00 0.00 0.00 3.86
594 1448 1.830477 TGCCATTTTGCATAACCCTCC 59.170 47.619 0.00 0.00 36.04 4.30
595 1449 2.497273 AGTGCCATTTTGCATAACCCTC 59.503 45.455 0.00 0.00 44.30 4.30
596 1450 2.497273 GAGTGCCATTTTGCATAACCCT 59.503 45.455 0.00 0.00 44.30 4.34
597 1451 2.735126 CGAGTGCCATTTTGCATAACCC 60.735 50.000 0.00 0.00 44.30 4.11
598 1452 2.529151 CGAGTGCCATTTTGCATAACC 58.471 47.619 0.00 0.00 44.30 2.85
599 1453 1.919918 GCGAGTGCCATTTTGCATAAC 59.080 47.619 0.00 0.00 44.30 1.89
600 1454 1.467204 CGCGAGTGCCATTTTGCATAA 60.467 47.619 0.00 0.00 44.30 1.90
601 1455 0.098552 CGCGAGTGCCATTTTGCATA 59.901 50.000 0.00 0.00 44.30 3.14
602 1456 1.153978 CGCGAGTGCCATTTTGCAT 60.154 52.632 0.00 0.00 44.30 3.96
603 1457 2.254951 CGCGAGTGCCATTTTGCA 59.745 55.556 0.00 0.00 39.37 4.08
604 1458 2.270297 ATCCGCGAGTGCCATTTTGC 62.270 55.000 8.23 0.00 38.08 3.68
605 1459 1.003545 CTATCCGCGAGTGCCATTTTG 60.004 52.381 8.23 0.00 38.08 2.44
606 1460 1.299541 CTATCCGCGAGTGCCATTTT 58.700 50.000 8.23 0.00 38.08 1.82
607 1461 0.532862 CCTATCCGCGAGTGCCATTT 60.533 55.000 8.23 0.00 38.08 2.32
608 1462 1.069765 CCTATCCGCGAGTGCCATT 59.930 57.895 8.23 0.00 38.08 3.16
609 1463 2.737180 CCTATCCGCGAGTGCCAT 59.263 61.111 8.23 0.00 38.08 4.40
610 1464 4.221422 GCCTATCCGCGAGTGCCA 62.221 66.667 8.23 0.00 38.08 4.92
611 1465 3.917760 AGCCTATCCGCGAGTGCC 61.918 66.667 8.23 0.00 38.08 5.01
612 1466 2.659897 CAGCCTATCCGCGAGTGC 60.660 66.667 8.23 2.43 37.91 4.40
613 1467 2.659897 GCAGCCTATCCGCGAGTG 60.660 66.667 8.23 0.00 0.00 3.51
619 1473 1.816863 ATACCACCGCAGCCTATCCG 61.817 60.000 0.00 0.00 0.00 4.18
620 1474 0.396811 AATACCACCGCAGCCTATCC 59.603 55.000 0.00 0.00 0.00 2.59
621 1475 2.256117 AAATACCACCGCAGCCTATC 57.744 50.000 0.00 0.00 0.00 2.08
622 1476 2.729028 AAAATACCACCGCAGCCTAT 57.271 45.000 0.00 0.00 0.00 2.57
623 1477 2.500392 AAAAATACCACCGCAGCCTA 57.500 45.000 0.00 0.00 0.00 3.93
624 1478 3.356814 AAAAATACCACCGCAGCCT 57.643 47.368 0.00 0.00 0.00 4.58
658 1512 8.884124 ATAAATCCTCACCTTCATCAGAAAAA 57.116 30.769 0.00 0.00 32.35 1.94
659 1513 8.884124 AATAAATCCTCACCTTCATCAGAAAA 57.116 30.769 0.00 0.00 32.35 2.29
660 1514 9.973661 TTAATAAATCCTCACCTTCATCAGAAA 57.026 29.630 0.00 0.00 32.35 2.52
661 1515 9.618890 CTTAATAAATCCTCACCTTCATCAGAA 57.381 33.333 0.00 0.00 0.00 3.02
662 1516 8.992349 TCTTAATAAATCCTCACCTTCATCAGA 58.008 33.333 0.00 0.00 0.00 3.27
663 1517 9.790344 ATCTTAATAAATCCTCACCTTCATCAG 57.210 33.333 0.00 0.00 0.00 2.90
693 1547 5.365619 AGAGTCCTCGCTTTTGTCTAAAAA 58.634 37.500 0.00 0.00 33.57 1.94
694 1548 4.957296 AGAGTCCTCGCTTTTGTCTAAAA 58.043 39.130 0.00 0.00 33.22 1.52
695 1549 4.602340 AGAGTCCTCGCTTTTGTCTAAA 57.398 40.909 0.00 0.00 34.09 1.85
696 1550 5.916661 ATAGAGTCCTCGCTTTTGTCTAA 57.083 39.130 0.00 0.00 34.09 2.10
697 1551 8.865420 ATATATAGAGTCCTCGCTTTTGTCTA 57.135 34.615 0.00 0.00 34.09 2.59
698 1552 7.768807 ATATATAGAGTCCTCGCTTTTGTCT 57.231 36.000 0.00 0.00 34.09 3.41
699 1553 8.819643 AAATATATAGAGTCCTCGCTTTTGTC 57.180 34.615 0.00 0.00 34.09 3.18
700 1554 9.614792 AAAAATATATAGAGTCCTCGCTTTTGT 57.385 29.630 0.00 0.00 34.09 2.83
752 1606 0.515564 GTAGCGCCGCTTGAGAAAAA 59.484 50.000 20.18 0.00 40.44 1.94
753 1607 0.601576 TGTAGCGCCGCTTGAGAAAA 60.602 50.000 20.18 0.00 40.44 2.29
754 1608 1.005512 TGTAGCGCCGCTTGAGAAA 60.006 52.632 20.18 0.00 40.44 2.52
755 1609 1.446099 CTGTAGCGCCGCTTGAGAA 60.446 57.895 20.18 0.00 40.44 2.87
756 1610 2.181777 CTGTAGCGCCGCTTGAGA 59.818 61.111 20.18 0.00 40.44 3.27
757 1611 1.875813 CTCTGTAGCGCCGCTTGAG 60.876 63.158 20.18 18.25 40.44 3.02
758 1612 1.310216 TACTCTGTAGCGCCGCTTGA 61.310 55.000 20.18 12.70 40.44 3.02
759 1613 0.457853 TTACTCTGTAGCGCCGCTTG 60.458 55.000 20.18 8.58 40.44 4.01
760 1614 0.458025 GTTACTCTGTAGCGCCGCTT 60.458 55.000 20.18 0.00 40.44 4.68
761 1615 1.139095 GTTACTCTGTAGCGCCGCT 59.861 57.895 18.67 18.67 43.41 5.52
762 1616 2.222217 CGTTACTCTGTAGCGCCGC 61.222 63.158 2.29 0.00 0.00 6.53
763 1617 2.222217 GCGTTACTCTGTAGCGCCG 61.222 63.158 21.90 0.00 40.42 6.46
764 1618 3.689411 GCGTTACTCTGTAGCGCC 58.311 61.111 21.90 9.15 40.42 6.53
765 1619 1.877165 GGGCGTTACTCTGTAGCGC 60.877 63.158 23.51 23.51 44.41 5.92
766 1620 1.226888 GGGGCGTTACTCTGTAGCG 60.227 63.158 9.06 9.06 0.00 4.26
767 1621 0.248289 TTGGGGCGTTACTCTGTAGC 59.752 55.000 0.00 0.00 0.00 3.58
768 1622 1.405121 GGTTGGGGCGTTACTCTGTAG 60.405 57.143 0.00 0.00 0.00 2.74
769 1623 0.609662 GGTTGGGGCGTTACTCTGTA 59.390 55.000 0.00 0.00 0.00 2.74
770 1624 1.373812 GGTTGGGGCGTTACTCTGT 59.626 57.895 0.00 0.00 0.00 3.41
771 1625 0.953960 GTGGTTGGGGCGTTACTCTG 60.954 60.000 0.00 0.00 0.00 3.35
772 1626 1.125711 AGTGGTTGGGGCGTTACTCT 61.126 55.000 0.00 0.00 0.00 3.24
773 1627 0.609662 TAGTGGTTGGGGCGTTACTC 59.390 55.000 0.00 0.00 0.00 2.59
774 1628 0.611714 CTAGTGGTTGGGGCGTTACT 59.388 55.000 0.00 0.00 0.00 2.24
775 1629 0.322648 ACTAGTGGTTGGGGCGTTAC 59.677 55.000 0.00 0.00 0.00 2.50
776 1630 1.935799 TACTAGTGGTTGGGGCGTTA 58.064 50.000 5.39 0.00 0.00 3.18
777 1631 1.282382 ATACTAGTGGTTGGGGCGTT 58.718 50.000 5.39 0.00 0.00 4.84
778 1632 2.163810 TATACTAGTGGTTGGGGCGT 57.836 50.000 5.39 0.00 0.00 5.68
779 1633 3.764237 AATATACTAGTGGTTGGGGCG 57.236 47.619 5.39 0.00 0.00 6.13
780 1634 8.357402 CAAATAAAATATACTAGTGGTTGGGGC 58.643 37.037 5.39 0.00 0.00 5.80
781 1635 9.416284 ACAAATAAAATATACTAGTGGTTGGGG 57.584 33.333 5.39 0.00 0.00 4.96
811 1665 7.119262 TCGAATTGTCTGGAATTCTCCTTTTAC 59.881 37.037 5.23 0.00 42.94 2.01
820 1674 2.223044 GCGGTCGAATTGTCTGGAATTC 60.223 50.000 0.00 0.00 38.47 2.17
914 1769 1.399343 CGTCTGAGCGTACGAAACTGA 60.399 52.381 21.65 14.41 41.55 3.41
915 1770 0.975544 CGTCTGAGCGTACGAAACTG 59.024 55.000 21.65 12.43 41.55 3.16
916 1771 0.870393 TCGTCTGAGCGTACGAAACT 59.130 50.000 21.65 6.51 44.47 2.66
917 1772 3.373020 TCGTCTGAGCGTACGAAAC 57.627 52.632 21.65 9.52 44.47 2.78
1290 2155 2.993264 TTGACGACCCCCGACTCC 60.993 66.667 0.00 0.00 41.76 3.85
1562 2427 2.039405 GGAGCAGGAGCAACAGCTG 61.039 63.158 13.48 13.48 45.49 4.24
1563 2428 1.776975 AAGGAGCAGGAGCAACAGCT 61.777 55.000 0.00 0.00 45.49 4.24
1731 2608 1.954382 GTGAAACCCTTCCACCTGTTC 59.046 52.381 0.00 0.00 0.00 3.18
1827 2704 2.186384 CCTTCCTGCAGCTCCTCG 59.814 66.667 8.66 0.00 0.00 4.63
1917 2794 8.978874 AGCACAATACCATAATGATGTCTTTA 57.021 30.769 0.00 0.00 0.00 1.85
1934 2811 5.703978 ACATAACACAAGCAAGCACAATA 57.296 34.783 0.00 0.00 0.00 1.90
1961 2838 2.259204 CGAACGGTGGAGCGGTAA 59.741 61.111 3.00 0.00 0.00 2.85
1976 2853 5.187772 CAGATGGATCCCTATCAAATACCGA 59.812 44.000 9.90 0.00 33.41 4.69
1994 2871 4.997395 CCCTATCAAATACCGAACAGATGG 59.003 45.833 0.00 0.00 0.00 3.51
1999 2876 4.141597 TGCATCCCTATCAAATACCGAACA 60.142 41.667 0.00 0.00 0.00 3.18
2113 2990 1.200483 CAGCGCGTCTAACTGTATGG 58.800 55.000 8.43 0.00 0.00 2.74
2128 3005 2.818274 GGCCCGTTCTTACCAGCG 60.818 66.667 0.00 0.00 0.00 5.18
2272 3310 3.710209 AATGCCATACTAGAGATGCCC 57.290 47.619 0.00 0.00 0.00 5.36
2366 3404 6.725246 CGAAGATTTCCATGGTAATTGGTAC 58.275 40.000 16.78 5.10 35.64 3.34
2383 3421 4.125703 CAAGGCTAGAATCTGCGAAGATT 58.874 43.478 18.95 18.95 40.81 2.40
2386 3424 2.898705 ACAAGGCTAGAATCTGCGAAG 58.101 47.619 0.00 0.00 0.00 3.79
2389 3427 2.131183 GCTACAAGGCTAGAATCTGCG 58.869 52.381 0.00 0.00 0.00 5.18
2390 3428 2.488952 GGCTACAAGGCTAGAATCTGC 58.511 52.381 0.00 0.00 37.85 4.26
2536 3579 5.902431 ACCATTCTTCTAGCTAGGACTCATT 59.098 40.000 20.58 0.00 0.00 2.57
2701 3746 0.960364 AATGTTAGGCGGCCACTGTG 60.960 55.000 23.09 0.00 0.00 3.66
2708 3753 0.107165 AGGAAGGAATGTTAGGCGGC 60.107 55.000 0.00 0.00 0.00 6.53
2709 3754 2.017049 CAAGGAAGGAATGTTAGGCGG 58.983 52.381 0.00 0.00 0.00 6.13
2710 3755 1.401905 GCAAGGAAGGAATGTTAGGCG 59.598 52.381 0.00 0.00 0.00 5.52
2733 3778 5.118990 GCATATTACGGCATGGAGATACAT 58.881 41.667 0.00 0.00 0.00 2.29
2775 3820 3.795688 AGGAAAAGAGACATGGAGCAA 57.204 42.857 0.00 0.00 0.00 3.91
2811 3856 6.092807 GGCCAAGCATATTAAGCACTAGTATC 59.907 42.308 0.00 0.00 0.00 2.24
2849 3895 5.411831 ACAGAACATCACTAGCAAGATGA 57.588 39.130 20.74 5.19 43.28 2.92
3016 4062 9.092876 TCAAAAGTTTAAAGCACAATAACTTGG 57.907 29.630 0.00 0.00 38.60 3.61
3023 4069 8.504812 ACCAATTCAAAAGTTTAAAGCACAAT 57.495 26.923 0.00 0.00 0.00 2.71
3349 4398 3.123804 CCCAGCGTGATGAATACTGTAC 58.876 50.000 0.00 0.00 0.00 2.90
3350 4399 2.764010 ACCCAGCGTGATGAATACTGTA 59.236 45.455 0.00 0.00 0.00 2.74
3351 4400 1.555075 ACCCAGCGTGATGAATACTGT 59.445 47.619 0.00 0.00 0.00 3.55
3352 4401 2.315925 ACCCAGCGTGATGAATACTG 57.684 50.000 0.00 0.00 0.00 2.74
3353 4402 2.027192 ACAACCCAGCGTGATGAATACT 60.027 45.455 0.00 0.00 0.00 2.12
3379 4428 2.287668 ACTTTCAGGAGTGACGACTTCG 60.288 50.000 0.00 0.00 46.33 3.79
3393 4442 4.142403 TGAGTCACAAGCCAAAACTTTCAG 60.142 41.667 0.00 0.00 0.00 3.02
3403 4452 2.234661 CCTCTACATGAGTCACAAGCCA 59.765 50.000 0.00 0.00 41.11 4.75
3404 4453 2.898705 CCTCTACATGAGTCACAAGCC 58.101 52.381 0.00 0.00 41.11 4.35
3455 4504 5.746245 TCATACAAACGCAAGGAACAAAAAG 59.254 36.000 0.00 0.00 46.39 2.27
3472 4521 9.693739 AAATTTATCTGGTACCATGTCATACAA 57.306 29.630 16.75 1.31 0.00 2.41
3498 4547 8.372459 TGCTTGTAGAACTAGAACCTTCAATAA 58.628 33.333 0.00 0.00 0.00 1.40
3530 4579 2.682256 TTTGGCAAAGCAGCACTCGC 62.682 55.000 8.93 0.00 35.83 5.03
3546 4595 6.547493 TTCGAAGTTTTTCACGACATTTTG 57.453 33.333 0.00 0.00 34.59 2.44
3641 4692 4.637276 TGGTAACATGAAACTGTGTCGAT 58.363 39.130 0.00 0.00 46.17 3.59
3697 4748 1.536462 ATGCAACGTCGCGCAAAAAC 61.536 50.000 8.75 0.00 42.37 2.43
3717 4872 9.767684 TTATGTTCTACATTTTTGCGAAGTATG 57.232 29.630 8.55 8.55 39.88 2.39
3721 4876 8.586273 CCAATTATGTTCTACATTTTTGCGAAG 58.414 33.333 0.00 0.00 39.88 3.79
3724 4879 7.201427 CCACCAATTATGTTCTACATTTTTGCG 60.201 37.037 0.00 0.00 39.88 4.85
3733 4929 6.151144 AGAGCAAACCACCAATTATGTTCTAC 59.849 38.462 0.00 0.00 0.00 2.59
3811 5030 2.512515 GTGCTCCTCCATGGCGAC 60.513 66.667 6.96 0.00 35.26 5.19
3848 5067 2.990642 CGAATCGGACATGCCATCA 58.009 52.632 0.00 0.00 35.94 3.07
3862 5081 1.228429 CACAACCACCCCACCGAAT 60.228 57.895 0.00 0.00 0.00 3.34
3863 5082 2.193517 CACAACCACCCCACCGAA 59.806 61.111 0.00 0.00 0.00 4.30
3864 5083 3.091190 ACACAACCACCCCACCGA 61.091 61.111 0.00 0.00 0.00 4.69
3865 5084 2.593436 GACACAACCACCCCACCG 60.593 66.667 0.00 0.00 0.00 4.94
3866 5085 2.203437 GGACACAACCACCCCACC 60.203 66.667 0.00 0.00 0.00 4.61
3867 5086 2.406002 ATCGGACACAACCACCCCAC 62.406 60.000 0.00 0.00 0.00 4.61
3868 5087 1.710996 AATCGGACACAACCACCCCA 61.711 55.000 0.00 0.00 0.00 4.96
3869 5088 0.958876 GAATCGGACACAACCACCCC 60.959 60.000 0.00 0.00 0.00 4.95
3870 5089 1.296056 CGAATCGGACACAACCACCC 61.296 60.000 0.00 0.00 0.00 4.61
3871 5090 2.159181 CGAATCGGACACAACCACC 58.841 57.895 0.00 0.00 0.00 4.61
3883 5102 2.038269 CAACCACCCCACCGAATCG 61.038 63.158 0.00 0.00 0.00 3.34
4055 5274 2.004808 CTCGTGGCTGCGATGACCTA 62.005 60.000 2.21 0.00 40.29 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.