Multiple sequence alignment - TraesCS7B01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G200300 chr7B 100.000 2716 0 0 412 3127 363251596 363254311 0.000000e+00 5016.0
1 TraesCS7B01G200300 chr7B 100.000 130 0 0 1 130 363251185 363251314 1.120000e-59 241.0
2 TraesCS7B01G200300 chr3D 94.859 2723 121 13 412 3127 58419724 58422434 0.000000e+00 4235.0
3 TraesCS7B01G200300 chr3D 95.833 48 1 1 7 54 301335427 301335381 3.340000e-10 76.8
4 TraesCS7B01G200300 chr3D 92.593 54 3 1 1 54 405507835 405507887 3.340000e-10 76.8
5 TraesCS7B01G200300 chr1B 94.471 2713 128 13 421 3127 498732050 498734746 0.000000e+00 4159.0
6 TraesCS7B01G200300 chr1D 94.399 2696 129 16 445 3127 339309366 339312052 0.000000e+00 4122.0
7 TraesCS7B01G200300 chr1D 94.014 2723 131 15 412 3127 232137588 232134891 0.000000e+00 4096.0
8 TraesCS7B01G200300 chr1D 94.179 2697 132 18 445 3127 462971661 462974346 0.000000e+00 4087.0
9 TraesCS7B01G200300 chr1D 95.471 2495 105 5 637 3127 467392319 467394809 0.000000e+00 3975.0
10 TraesCS7B01G200300 chr5D 95.595 2497 99 7 637 3127 354713239 354710748 0.000000e+00 3991.0
11 TraesCS7B01G200300 chr6B 93.236 2735 145 23 418 3127 127034723 127032004 0.000000e+00 3989.0
12 TraesCS7B01G200300 chr6B 92.654 2736 152 30 421 3124 548443975 548446693 0.000000e+00 3893.0
13 TraesCS7B01G200300 chr2D 95.351 2495 106 6 639 3127 437672473 437669983 0.000000e+00 3956.0
14 TraesCS7B01G200300 chr2D 92.593 54 3 1 1 54 59638191 59638243 3.340000e-10 76.8
15 TraesCS7B01G200300 chr2D 88.679 53 3 1 80 129 33992190 33992242 9.360000e-06 62.1
16 TraesCS7B01G200300 chr3B 92.533 2732 174 19 412 3127 682998253 682995536 0.000000e+00 3888.0
17 TraesCS7B01G200300 chr3B 95.833 48 1 1 7 54 145878064 145878018 3.340000e-10 76.8
18 TraesCS7B01G200300 chr2B 92.045 2728 180 24 415 3127 241125159 241127864 0.000000e+00 3801.0
19 TraesCS7B01G200300 chr6D 92.593 54 3 1 1 54 463375896 463375948 3.340000e-10 76.8
20 TraesCS7B01G200300 chr4B 92.000 50 4 0 1 50 581502997 581503046 1.560000e-08 71.3
21 TraesCS7B01G200300 chr2A 93.750 48 2 1 7 54 409187908 409187954 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G200300 chr7B 363251185 363254311 3126 False 2628.5 5016 100.000 1 3127 2 chr7B.!!$F1 3126
1 TraesCS7B01G200300 chr3D 58419724 58422434 2710 False 4235.0 4235 94.859 412 3127 1 chr3D.!!$F1 2715
2 TraesCS7B01G200300 chr1B 498732050 498734746 2696 False 4159.0 4159 94.471 421 3127 1 chr1B.!!$F1 2706
3 TraesCS7B01G200300 chr1D 339309366 339312052 2686 False 4122.0 4122 94.399 445 3127 1 chr1D.!!$F1 2682
4 TraesCS7B01G200300 chr1D 232134891 232137588 2697 True 4096.0 4096 94.014 412 3127 1 chr1D.!!$R1 2715
5 TraesCS7B01G200300 chr1D 462971661 462974346 2685 False 4087.0 4087 94.179 445 3127 1 chr1D.!!$F2 2682
6 TraesCS7B01G200300 chr1D 467392319 467394809 2490 False 3975.0 3975 95.471 637 3127 1 chr1D.!!$F3 2490
7 TraesCS7B01G200300 chr5D 354710748 354713239 2491 True 3991.0 3991 95.595 637 3127 1 chr5D.!!$R1 2490
8 TraesCS7B01G200300 chr6B 127032004 127034723 2719 True 3989.0 3989 93.236 418 3127 1 chr6B.!!$R1 2709
9 TraesCS7B01G200300 chr6B 548443975 548446693 2718 False 3893.0 3893 92.654 421 3124 1 chr6B.!!$F1 2703
10 TraesCS7B01G200300 chr2D 437669983 437672473 2490 True 3956.0 3956 95.351 639 3127 1 chr2D.!!$R1 2488
11 TraesCS7B01G200300 chr3B 682995536 682998253 2717 True 3888.0 3888 92.533 412 3127 1 chr3B.!!$R2 2715
12 TraesCS7B01G200300 chr2B 241125159 241127864 2705 False 3801.0 3801 92.045 415 3127 1 chr2B.!!$F1 2712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.813184 TAAGGACGTGGTGATCGGTC 59.187 55.000 0.0 0.0 0.0 4.79 F
55 56 2.202570 GGACGTGGTGATCGGTCG 60.203 66.667 0.0 0.0 0.0 4.79 F
1629 1679 2.029290 GGAGGTGAACGCTCTCAAAGTA 60.029 50.000 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 1219 0.036022 GGAGAAAGTGCAGAGCCTGT 59.964 55.0 0.00 0.00 33.43 4.00 R
1658 1708 0.540597 GCCCTTCTTCTTGCCCTTGT 60.541 55.0 0.00 0.00 0.00 3.16 R
2813 2882 0.317479 GGCCTAACCTATCGTGCGAT 59.683 55.0 11.87 11.87 38.54 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.493743 CTCCTATGGATTTCATGAAGAAGTG 57.506 40.000 8.41 0.00 37.57 3.16
25 26 6.359804 TCCTATGGATTTCATGAAGAAGTGG 58.640 40.000 8.41 6.89 37.57 4.00
26 27 6.158520 TCCTATGGATTTCATGAAGAAGTGGA 59.841 38.462 8.41 8.90 37.57 4.02
27 28 7.002879 CCTATGGATTTCATGAAGAAGTGGAT 58.997 38.462 8.41 0.00 37.57 3.41
28 29 6.710597 ATGGATTTCATGAAGAAGTGGATG 57.289 37.500 8.41 0.00 37.57 3.51
29 30 4.400251 TGGATTTCATGAAGAAGTGGATGC 59.600 41.667 8.41 3.65 37.57 3.91
30 31 4.400251 GGATTTCATGAAGAAGTGGATGCA 59.600 41.667 8.41 0.00 37.57 3.96
31 32 5.068723 GGATTTCATGAAGAAGTGGATGCAT 59.931 40.000 8.41 0.00 37.57 3.96
32 33 5.571784 TTTCATGAAGAAGTGGATGCATC 57.428 39.130 18.81 18.81 37.57 3.91
33 34 4.224991 TCATGAAGAAGTGGATGCATCA 57.775 40.909 27.25 11.43 0.00 3.07
34 35 4.788679 TCATGAAGAAGTGGATGCATCAT 58.211 39.130 27.25 10.50 0.00 2.45
35 36 5.198207 TCATGAAGAAGTGGATGCATCATT 58.802 37.500 27.25 17.96 0.00 2.57
36 37 6.358991 TCATGAAGAAGTGGATGCATCATTA 58.641 36.000 27.25 10.87 0.00 1.90
37 38 6.829811 TCATGAAGAAGTGGATGCATCATTAA 59.170 34.615 27.25 7.69 0.00 1.40
38 39 6.688637 TGAAGAAGTGGATGCATCATTAAG 57.311 37.500 27.25 0.00 0.00 1.85
39 40 5.591472 TGAAGAAGTGGATGCATCATTAAGG 59.409 40.000 27.25 0.00 0.00 2.69
40 41 5.378230 AGAAGTGGATGCATCATTAAGGA 57.622 39.130 27.25 0.00 0.00 3.36
41 42 5.128919 AGAAGTGGATGCATCATTAAGGAC 58.871 41.667 27.25 8.54 0.00 3.85
42 43 3.470709 AGTGGATGCATCATTAAGGACG 58.529 45.455 27.25 0.00 0.00 4.79
43 44 3.118261 AGTGGATGCATCATTAAGGACGT 60.118 43.478 27.25 0.00 0.00 4.34
44 45 3.002656 GTGGATGCATCATTAAGGACGTG 59.997 47.826 27.25 0.00 0.00 4.49
45 46 2.549754 GGATGCATCATTAAGGACGTGG 59.450 50.000 27.25 0.00 0.00 4.94
46 47 2.779755 TGCATCATTAAGGACGTGGT 57.220 45.000 0.00 0.00 0.00 4.16
47 48 2.355197 TGCATCATTAAGGACGTGGTG 58.645 47.619 0.00 0.00 0.00 4.17
48 49 2.027653 TGCATCATTAAGGACGTGGTGA 60.028 45.455 0.00 0.00 0.00 4.02
49 50 3.206150 GCATCATTAAGGACGTGGTGAT 58.794 45.455 0.00 0.00 0.00 3.06
50 51 3.248602 GCATCATTAAGGACGTGGTGATC 59.751 47.826 0.00 0.00 0.00 2.92
51 52 3.159353 TCATTAAGGACGTGGTGATCG 57.841 47.619 0.00 0.00 0.00 3.69
52 53 2.159156 TCATTAAGGACGTGGTGATCGG 60.159 50.000 0.00 0.00 0.00 4.18
53 54 1.259609 TTAAGGACGTGGTGATCGGT 58.740 50.000 0.00 0.00 0.00 4.69
54 55 0.813184 TAAGGACGTGGTGATCGGTC 59.187 55.000 0.00 0.00 0.00 4.79
55 56 2.202570 GGACGTGGTGATCGGTCG 60.203 66.667 0.00 0.00 0.00 4.79
56 57 2.202570 GACGTGGTGATCGGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
57 58 4.430765 ACGTGGTGATCGGTCGGC 62.431 66.667 0.00 0.00 0.00 5.54
59 60 4.832608 GTGGTGATCGGTCGGCCC 62.833 72.222 0.00 0.00 0.00 5.80
62 63 4.832608 GTGATCGGTCGGCCCCAC 62.833 72.222 0.00 2.43 0.00 4.61
64 65 4.530857 GATCGGTCGGCCCCACTG 62.531 72.222 0.00 0.00 0.00 3.66
74 75 4.217210 CCCCACTGGCCCACAACA 62.217 66.667 0.00 0.00 0.00 3.33
75 76 2.912025 CCCACTGGCCCACAACAC 60.912 66.667 0.00 0.00 0.00 3.32
76 77 2.912025 CCACTGGCCCACAACACC 60.912 66.667 0.00 0.00 0.00 4.16
77 78 2.912025 CACTGGCCCACAACACCC 60.912 66.667 0.00 0.00 0.00 4.61
78 79 4.579384 ACTGGCCCACAACACCCG 62.579 66.667 0.00 0.00 0.00 5.28
462 467 2.467962 GCTTGGAAACCCTAGCGAC 58.532 57.895 2.50 0.00 41.33 5.19
681 726 9.902196 CCTGTTTTTACGTGTAATTTATTCCTT 57.098 29.630 0.00 0.00 0.00 3.36
797 842 6.156256 TGGGCTAGTTTTCACATACTAGATGT 59.844 38.462 12.17 0.00 44.18 3.06
985 1034 7.558161 TTACCTGCTGTAATCTCATGATTTG 57.442 36.000 0.00 0.00 42.37 2.32
1004 1053 5.981088 TTTGTGCATAAATCACAGATGGT 57.019 34.783 4.30 0.00 44.18 3.55
1160 1209 3.146066 CCACTGATCCCAAGTTCGAAAA 58.854 45.455 0.00 0.00 0.00 2.29
1170 1219 4.321156 CCCAAGTTCGAAAATGAGAATGCA 60.321 41.667 0.00 0.00 0.00 3.96
1406 1456 5.029807 TGTATGACTCTTTGGTTGTGTGA 57.970 39.130 0.00 0.00 0.00 3.58
1459 1509 2.781681 AACCCTATCCACTTTCCACG 57.218 50.000 0.00 0.00 0.00 4.94
1629 1679 2.029290 GGAGGTGAACGCTCTCAAAGTA 60.029 50.000 0.00 0.00 0.00 2.24
1658 1708 2.634940 CTCAACAGAAGAAGAGGGGTCA 59.365 50.000 0.00 0.00 0.00 4.02
1834 1892 3.417275 CTCGGAAGGCGCGTGAGAT 62.417 63.158 8.43 0.00 0.00 2.75
1836 1894 2.125512 GGAAGGCGCGTGAGATGT 60.126 61.111 8.43 0.00 0.00 3.06
1923 1981 0.543277 CCTTGCTGCACCCATAGAGA 59.457 55.000 0.00 0.00 0.00 3.10
1967 2025 1.078759 CAGCTTTGGCGGTCTCTACG 61.079 60.000 0.00 0.00 44.37 3.51
1977 2035 2.034532 TCTCTACGGACGCCCACA 59.965 61.111 0.00 0.00 0.00 4.17
2243 2304 5.007034 TCTTTACTTTGGCGATTGGATGAA 58.993 37.500 0.00 0.00 0.00 2.57
2245 2306 3.575965 ACTTTGGCGATTGGATGAAAC 57.424 42.857 0.00 0.00 0.00 2.78
2386 2455 1.376683 CGCCCGAATGGAGGAAACA 60.377 57.895 0.00 0.00 37.49 2.83
2395 2464 0.112995 TGGAGGAAACATGCCTTGCT 59.887 50.000 2.30 2.30 35.44 3.91
2398 2467 1.200948 GAGGAAACATGCCTTGCTGAC 59.799 52.381 6.85 0.00 35.44 3.51
2514 2583 1.414181 CTCACATAGTTGGCTCCGGAT 59.586 52.381 3.57 0.00 0.00 4.18
2526 2595 2.160822 CTCCGGATGAGCCACTATTG 57.839 55.000 3.57 0.00 35.94 1.90
2595 2664 1.324134 CGGAGTCGACTCGTACTCTTC 59.676 57.143 33.07 18.68 43.76 2.87
2644 2713 2.202797 CCATGCTGAGACCGACGG 60.203 66.667 13.61 13.61 0.00 4.79
2653 2722 0.318107 GAGACCGACGGTGAAAACGA 60.318 55.000 27.26 0.00 35.25 3.85
2706 2775 4.013728 TGCAGGTGGTAAACATGTTATCC 58.986 43.478 12.39 16.61 42.63 2.59
2798 2867 3.056749 TCAAGACCGTCTTTAGAAGCTCC 60.057 47.826 11.24 0.00 33.78 4.70
2813 2882 3.648507 AGCTCCGAACTCTTCTACCTA 57.351 47.619 0.00 0.00 0.00 3.08
2815 2884 4.139038 AGCTCCGAACTCTTCTACCTATC 58.861 47.826 0.00 0.00 0.00 2.08
2838 2907 1.342674 ACGATAGGTTAGGCCACCTCA 60.343 52.381 17.79 6.06 44.63 3.86
2921 2991 4.080356 ACTTCCTGAATCCCGATGATTTCA 60.080 41.667 2.33 0.00 43.81 2.69
2960 3030 5.130643 GCTAAGGGGAAGTTAGTCATTAGGT 59.869 44.000 0.00 0.00 31.22 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.485984 CCACTTCTTCATGAAATCCATAGGAG 59.514 42.308 9.88 2.41 34.05 3.69
1 2 6.158520 TCCACTTCTTCATGAAATCCATAGGA 59.841 38.462 9.88 8.30 33.79 2.94
3 4 7.521748 GCATCCACTTCTTCATGAAATCCATAG 60.522 40.741 9.88 3.64 33.79 2.23
4 5 6.263842 GCATCCACTTCTTCATGAAATCCATA 59.736 38.462 9.88 0.00 33.79 2.74
5 6 5.068723 GCATCCACTTCTTCATGAAATCCAT 59.931 40.000 9.88 0.00 33.79 3.41
6 7 4.400251 GCATCCACTTCTTCATGAAATCCA 59.600 41.667 9.88 0.00 33.79 3.41
7 8 4.400251 TGCATCCACTTCTTCATGAAATCC 59.600 41.667 9.88 0.00 33.79 3.01
8 9 5.571784 TGCATCCACTTCTTCATGAAATC 57.428 39.130 9.88 0.00 33.79 2.17
9 10 5.655090 TGATGCATCCACTTCTTCATGAAAT 59.345 36.000 23.67 0.00 33.79 2.17
11 12 4.591929 TGATGCATCCACTTCTTCATGAA 58.408 39.130 23.67 8.12 0.00 2.57
12 13 4.224991 TGATGCATCCACTTCTTCATGA 57.775 40.909 23.67 0.00 0.00 3.07
14 15 6.264744 CCTTAATGATGCATCCACTTCTTCAT 59.735 38.462 23.67 6.04 0.00 2.57
15 16 5.591472 CCTTAATGATGCATCCACTTCTTCA 59.409 40.000 23.67 3.65 0.00 3.02
16 17 5.824624 TCCTTAATGATGCATCCACTTCTTC 59.175 40.000 23.67 0.00 0.00 2.87
17 18 5.591877 GTCCTTAATGATGCATCCACTTCTT 59.408 40.000 23.67 9.82 0.00 2.52
18 19 5.128919 GTCCTTAATGATGCATCCACTTCT 58.871 41.667 23.67 4.64 0.00 2.85
19 20 4.024556 CGTCCTTAATGATGCATCCACTTC 60.025 45.833 23.67 0.00 0.00 3.01
20 21 3.879295 CGTCCTTAATGATGCATCCACTT 59.121 43.478 23.67 15.86 0.00 3.16
21 22 3.118261 ACGTCCTTAATGATGCATCCACT 60.118 43.478 23.67 10.45 0.00 4.00
22 23 3.002656 CACGTCCTTAATGATGCATCCAC 59.997 47.826 23.67 7.89 0.00 4.02
23 24 3.205338 CACGTCCTTAATGATGCATCCA 58.795 45.455 23.67 12.20 0.00 3.41
24 25 2.549754 CCACGTCCTTAATGATGCATCC 59.450 50.000 23.67 6.71 0.00 3.51
25 26 3.002656 CACCACGTCCTTAATGATGCATC 59.997 47.826 20.14 20.14 0.00 3.91
26 27 2.945008 CACCACGTCCTTAATGATGCAT 59.055 45.455 0.00 0.00 0.00 3.96
27 28 2.027653 TCACCACGTCCTTAATGATGCA 60.028 45.455 0.00 0.00 0.00 3.96
28 29 2.627945 TCACCACGTCCTTAATGATGC 58.372 47.619 0.34 0.00 0.00 3.91
29 30 3.490896 CGATCACCACGTCCTTAATGATG 59.509 47.826 0.00 0.00 0.00 3.07
30 31 3.492656 CCGATCACCACGTCCTTAATGAT 60.493 47.826 0.00 0.00 0.00 2.45
31 32 2.159156 CCGATCACCACGTCCTTAATGA 60.159 50.000 0.00 0.00 0.00 2.57
32 33 2.201732 CCGATCACCACGTCCTTAATG 58.798 52.381 0.00 0.00 0.00 1.90
33 34 1.829222 ACCGATCACCACGTCCTTAAT 59.171 47.619 0.00 0.00 0.00 1.40
34 35 1.203052 GACCGATCACCACGTCCTTAA 59.797 52.381 0.00 0.00 0.00 1.85
35 36 0.813184 GACCGATCACCACGTCCTTA 59.187 55.000 0.00 0.00 0.00 2.69
36 37 1.590147 GACCGATCACCACGTCCTT 59.410 57.895 0.00 0.00 0.00 3.36
37 38 2.697761 CGACCGATCACCACGTCCT 61.698 63.158 0.00 0.00 0.00 3.85
38 39 2.202570 CGACCGATCACCACGTCC 60.203 66.667 0.00 0.00 0.00 4.79
39 40 2.202570 CCGACCGATCACCACGTC 60.203 66.667 0.00 0.00 0.00 4.34
40 41 4.430765 GCCGACCGATCACCACGT 62.431 66.667 0.00 0.00 0.00 4.49
42 43 4.832608 GGGCCGACCGATCACCAC 62.833 72.222 0.00 0.00 36.48 4.16
45 46 4.832608 GTGGGGCCGACCGATCAC 62.833 72.222 7.56 0.00 41.60 3.06
47 48 4.530857 CAGTGGGGCCGACCGATC 62.531 72.222 15.64 0.00 41.60 3.69
57 58 4.217210 TGTTGTGGGCCAGTGGGG 62.217 66.667 6.40 0.00 40.85 4.96
58 59 2.912025 GTGTTGTGGGCCAGTGGG 60.912 66.667 6.40 0.00 37.18 4.61
59 60 2.912025 GGTGTTGTGGGCCAGTGG 60.912 66.667 6.40 4.20 0.00 4.00
60 61 2.912025 GGGTGTTGTGGGCCAGTG 60.912 66.667 6.40 0.00 0.00 3.66
61 62 4.579384 CGGGTGTTGTGGGCCAGT 62.579 66.667 6.40 0.00 0.00 4.00
577 610 1.904287 TGTCTGCAGGCCGTAAAATT 58.096 45.000 17.28 0.00 0.00 1.82
582 615 0.602638 CAGTTTGTCTGCAGGCCGTA 60.603 55.000 17.28 0.00 37.36 4.02
583 616 1.893808 CAGTTTGTCTGCAGGCCGT 60.894 57.895 17.28 0.00 37.36 5.68
681 726 5.470098 GGGCTTCTATGCGAAATATTTCAGA 59.530 40.000 24.23 17.02 37.01 3.27
797 842 7.552330 TCATGTTACAAGATAGCATGTTAAGCA 59.448 33.333 9.62 0.00 37.40 3.91
985 1034 3.002656 CCGACCATCTGTGATTTATGCAC 59.997 47.826 0.00 0.00 36.81 4.57
996 1045 1.628340 TGGACAATTCCGACCATCTGT 59.372 47.619 0.00 0.00 46.37 3.41
1004 1053 1.697432 ACTCCTTGTGGACAATTCCGA 59.303 47.619 0.00 0.00 46.37 4.55
1160 1209 2.017623 GCAGAGCCTGTGCATTCTCAT 61.018 52.381 9.24 0.00 40.86 2.90
1170 1219 0.036022 GGAGAAAGTGCAGAGCCTGT 59.964 55.000 0.00 0.00 33.43 4.00
1406 1456 4.141228 TCTGGGAGTCGGTAATCTCAGTAT 60.141 45.833 3.00 0.00 43.31 2.12
1629 1679 2.574006 TCTTCTGTTGAGGCTTGCAT 57.426 45.000 0.00 0.00 0.00 3.96
1658 1708 0.540597 GCCCTTCTTCTTGCCCTTGT 60.541 55.000 0.00 0.00 0.00 3.16
1834 1892 1.348064 CTGAACCAGGGTGAGGTACA 58.652 55.000 0.00 0.00 38.76 2.90
1845 1903 1.298014 GTGCTCCCTCCTGAACCAG 59.702 63.158 0.00 0.00 0.00 4.00
1913 1971 1.075450 GGGGGTCGTCTCTATGGGT 60.075 63.158 0.00 0.00 0.00 4.51
1967 2025 4.856801 ATGGCGATGTGGGCGTCC 62.857 66.667 0.00 0.00 34.76 4.79
1977 2035 1.224592 GGTCAACCTCCATGGCGAT 59.775 57.895 6.96 0.00 40.22 4.58
2178 2239 6.183309 AGAGCTTACAACCAAATCGAATTC 57.817 37.500 0.00 0.00 0.00 2.17
2351 2420 1.135689 GGCGCCACACACATTCTAAAG 60.136 52.381 24.80 0.00 0.00 1.85
2359 2428 4.634703 ATTCGGGCGCCACACACA 62.635 61.111 30.85 5.53 0.00 3.72
2386 2455 3.437795 GCGCTGTCAGCAAGGCAT 61.438 61.111 24.13 0.00 42.58 4.40
2395 2464 1.540435 TATGAGTGGTGGCGCTGTCA 61.540 55.000 7.64 0.00 0.00 3.58
2398 2467 1.815421 GGTATGAGTGGTGGCGCTG 60.815 63.158 7.64 0.00 0.00 5.18
2456 2525 9.057089 GTGATTTTCATAATACTTTCCGGAGAT 57.943 33.333 3.34 0.00 0.00 2.75
2514 2583 3.116096 AGGGAGTACAATAGTGGCTCA 57.884 47.619 15.36 0.00 34.72 4.26
2595 2664 2.468831 GCGGATGTCTCTAAAGCTCAG 58.531 52.381 0.00 0.00 0.00 3.35
2644 2713 1.002792 GGCACTCCTTGTCGTTTTCAC 60.003 52.381 0.00 0.00 0.00 3.18
2706 2775 2.357637 TGTCAAACGAAGGAAGCCTTTG 59.642 45.455 11.09 11.09 44.82 2.77
2798 2867 3.619729 GTGCGATAGGTAGAAGAGTTCG 58.380 50.000 0.00 0.00 34.02 3.95
2813 2882 0.317479 GGCCTAACCTATCGTGCGAT 59.683 55.000 11.87 11.87 38.54 4.58
2815 2884 0.874607 GTGGCCTAACCTATCGTGCG 60.875 60.000 3.32 0.00 40.22 5.34
2960 3030 1.612146 TCACCTTGAGGGGCGATGA 60.612 57.895 1.54 0.00 38.88 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.