AutoCloner

Multiple sequence alignment - TraesCS7B01G199300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G199300	chr7B	100.000	2320	0	0	1	2320	358428727	358426408	0.000000e+00	4285.0
1	TraesCS7B01G199300	chr7B	74.269	342	70	14	1146	1472	15609045	15609383	6.730000e-26	128.0
2	TraesCS7B01G199300	chr2B	98.021	1263	24	1	1	1262	36877975	36879237	0.000000e+00	2193.0
3	TraesCS7B01G199300	chr2B	98.261	230	4	0	1253	1482	36888837	36889066	9.980000e-109	403.0
4	TraesCS7B01G199300	chr2B	81.735	219	27	11	1877	2087	311405513	311405300	1.100000e-38	171.0
5	TraesCS7B01G199300	chr3B	79.195	1490	291	17	1	1481	826160195	826158716	0.000000e+00	1016.0
6	TraesCS7B01G199300	chr3B	85.034	147	20	1	1987	2131	316751829	316751683	5.160000e-32	148.0
7	TraesCS7B01G199300	chr7A	79.004	1486	293	17	1	1477	85067227	85068702	0.000000e+00	998.0
8	TraesCS7B01G199300	chr6B	78.859	1490	295	18	1	1481	460065	461543	0.000000e+00	989.0
9	TraesCS7B01G199300	chr5B	78.677	1482	295	19	1	1472	319343187	319344657	0.000000e+00	966.0
10	TraesCS7B01G199300	chr5B	96.970	33	1	0	1445	1477	32641028	32641060	3.220000e-04	56.5
11	TraesCS7B01G199300	chr7D	88.282	751	70	10	1466	2209	293839634	293838895	0.000000e+00	883.0
12	TraesCS7B01G199300	chr7D	76.742	1320	282	20	1	1307	75229123	75227816	0.000000e+00	713.0
13	TraesCS7B01G199300	chr5D	77.258	1495	302	26	2	1477	545108749	545110224	0.000000e+00	843.0
14	TraesCS7B01G199300	chr5D	76.976	1316	286	16	1	1307	278286191	278284884	0.000000e+00	736.0
15	TraesCS7B01G199300	chr2D	82.130	817	112	26	1528	2320	406265457	406266263	0.000000e+00	669.0
16	TraesCS7B01G199300	chr1B	79.920	498	57	36	1734	2204	232230528	232230047	2.220000e-85	326.0
17	TraesCS7B01G199300	chr1B	82.463	268	33	12	1917	2177	525923202	525922942	3.000000e-54	222.0
18	TraesCS7B01G199300	chr1B	76.350	389	80	10	1094	1476	596259759	596259377	5.060000e-47	198.0
19	TraesCS7B01G199300	chr1B	92.308	39	3	0	1445	1483	120470377	120470339	3.220000e-04	56.5
20	TraesCS7B01G199300	chr1B	96.875	32	1	0	1445	1476	635980414	635980445	1.000000e-03	54.7
21	TraesCS7B01G199300	chr3D	78.808	302	52	9	1190	1487	593218750	593218457	2.350000e-45	193.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G199300	chr7B	358426408	358428727	2319	True	4285	4285	100.000	1	2320	1	chr7B.!!$R1	2319
1	TraesCS7B01G199300	chr2B	36877975	36879237	1262	False	2193	2193	98.021	1	1262	1	chr2B.!!$F1	1261
2	TraesCS7B01G199300	chr3B	826158716	826160195	1479	True	1016	1016	79.195	1	1481	1	chr3B.!!$R2	1480
3	TraesCS7B01G199300	chr7A	85067227	85068702	1475	False	998	998	79.004	1	1477	1	chr7A.!!$F1	1476
4	TraesCS7B01G199300	chr6B	460065	461543	1478	False	989	989	78.859	1	1481	1	chr6B.!!$F1	1480
5	TraesCS7B01G199300	chr5B	319343187	319344657	1470	False	966	966	78.677	1	1472	1	chr5B.!!$F2	1471
6	TraesCS7B01G199300	chr7D	293838895	293839634	739	True	883	883	88.282	1466	2209	1	chr7D.!!$R2	743
7	TraesCS7B01G199300	chr7D	75227816	75229123	1307	True	713	713	76.742	1	1307	1	chr7D.!!$R1	1306
8	TraesCS7B01G199300	chr5D	545108749	545110224	1475	False	843	843	77.258	2	1477	1	chr5D.!!$F1	1475
9	TraesCS7B01G199300	chr5D	278284884	278286191	1307	True	736	736	76.976	1	1307	1	chr5D.!!$R1	1306
10	TraesCS7B01G199300	chr2D	406265457	406266263	806	False	669	669	82.130	1528	2320	1	chr2D.!!$F1	792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
601	602	1.530323	GCCGGAGCTGTTTTCCTTTA	58.47	50.0	5.05	0.0	35.5	1.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1428	1439	1.387119	AGAAGGGAAGCAGGGGAAAT	58.613	50.0	0.0	0.0	0.0	2.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
76	77	3.756963	GCCTCTTTCCATTTACCGTCTTT	59.243	43.478	0.00	0.00	0.00	2.52
601	602	1.530323	GCCGGAGCTGTTTTCCTTTA	58.470	50.000	5.05	0.00	35.50	1.85
904	905	4.451774	GCAAATTTTTCATGTGGCTTGCTA	59.548	37.500	0.00	0.00	36.02	3.49
940	941	5.184864	TGTTTGACGGCAGATAATTTGGAAT	59.815	36.000	0.00	0.00	0.00	3.01
1001	1002	1.094785	GCTGCACCCGAAACATGTAT	58.905	50.000	0.00	0.00	0.00	2.29
1028	1029	9.037737	GCATCTATTTGTGCAATGTGAATTTAT	57.962	29.630	0.00	0.00	40.94	1.40
1323	1325	2.171448	AGCGACCTAAATGCCTGATCTT	59.829	45.455	0.00	0.00	0.00	2.40
1325	1327	3.535561	CGACCTAAATGCCTGATCTTGT	58.464	45.455	0.00	0.00	0.00	3.16
1326	1328	4.693283	CGACCTAAATGCCTGATCTTGTA	58.307	43.478	0.00	0.00	0.00	2.41
1338	1340	3.875727	CTGATCTTGTAGGCATGTCTTGG	59.124	47.826	4.49	0.00	0.00	3.61
1341	1343	4.098914	TCTTGTAGGCATGTCTTGGTTT	57.901	40.909	4.49	0.00	0.00	3.27
1348	1350	4.666512	AGGCATGTCTTGGTTTCTTGTAT	58.333	39.130	0.00	0.00	0.00	2.29
1349	1351	5.079643	AGGCATGTCTTGGTTTCTTGTATT	58.920	37.500	0.00	0.00	0.00	1.89
1351	1353	5.863935	GGCATGTCTTGGTTTCTTGTATTTC	59.136	40.000	0.00	0.00	0.00	2.17
1352	1354	6.294731	GGCATGTCTTGGTTTCTTGTATTTCT	60.295	38.462	0.00	0.00	0.00	2.52
1353	1355	6.583806	GCATGTCTTGGTTTCTTGTATTTCTG	59.416	38.462	0.00	0.00	0.00	3.02
1354	1356	7.651808	CATGTCTTGGTTTCTTGTATTTCTGT	58.348	34.615	0.00	0.00	0.00	3.41
1356	1358	8.378172	TGTCTTGGTTTCTTGTATTTCTGTAG	57.622	34.615	0.00	0.00	0.00	2.74
1363	1365	9.665264	GGTTTCTTGTATTTCTGTAGTTTTCTG	57.335	33.333	0.00	0.00	0.00	3.02
1370	1381	9.296400	TGTATTTCTGTAGTTTTCTGTTTTTGC	57.704	29.630	0.00	0.00	0.00	3.68
1374	1385	5.125417	TCTGTAGTTTTCTGTTTTTGCTGCT	59.875	36.000	0.00	0.00	0.00	4.24
1383	1394	0.673437	TTTTTGCTGCTGGGCTGTAC	59.327	50.000	0.00	0.00	0.00	2.90
1384	1395	1.178534	TTTTGCTGCTGGGCTGTACC	61.179	55.000	0.00	0.00	37.93	3.34
1387	1398	2.125512	CTGCTGGGCTGTACCGTC	60.126	66.667	0.00	0.00	40.62	4.79
1388	1399	3.665675	CTGCTGGGCTGTACCGTCC	62.666	68.421	0.17	0.17	40.62	4.79
1390	1401	2.579201	CTGGGCTGTACCGTCCTG	59.421	66.667	9.48	4.98	40.62	3.86
1425	1436	5.404395	AGTTCTCCTAGACTGTAACCCTTT	58.596	41.667	0.00	0.00	0.00	3.11
1426	1437	5.246429	AGTTCTCCTAGACTGTAACCCTTTG	59.754	44.000	0.00	0.00	0.00	2.77
1427	1438	4.748701	TCTCCTAGACTGTAACCCTTTGT	58.251	43.478	0.00	0.00	0.00	2.83
1428	1439	5.895807	TCTCCTAGACTGTAACCCTTTGTA	58.104	41.667	0.00	0.00	0.00	2.41
1429	1440	6.500336	TCTCCTAGACTGTAACCCTTTGTAT	58.500	40.000	0.00	0.00	0.00	2.29
1430	1441	6.958192	TCTCCTAGACTGTAACCCTTTGTATT	59.042	38.462	0.00	0.00	0.00	1.89
1432	1443	7.618137	TCCTAGACTGTAACCCTTTGTATTTC	58.382	38.462	0.00	0.00	0.00	2.17
1433	1444	6.822170	CCTAGACTGTAACCCTTTGTATTTCC	59.178	42.308	0.00	0.00	0.00	3.13
1435	1446	4.669700	ACTGTAACCCTTTGTATTTCCCC	58.330	43.478	0.00	0.00	0.00	4.81
1436	1447	4.355889	ACTGTAACCCTTTGTATTTCCCCT	59.644	41.667	0.00	0.00	0.00	4.79
1437	1448	4.668636	TGTAACCCTTTGTATTTCCCCTG	58.331	43.478	0.00	0.00	0.00	4.45
1444	1459	1.681229	TGTATTTCCCCTGCTTCCCT	58.319	50.000	0.00	0.00	0.00	4.20
1464	1479	5.358725	TCCCTTCTAATAAAATTCGGCCAAC	59.641	40.000	2.24	0.00	0.00	3.77
1479	1494	1.600636	CAACGGCCCTTTGAGAGCA	60.601	57.895	5.93	0.00	0.00	4.26
1480	1495	0.962356	CAACGGCCCTTTGAGAGCAT	60.962	55.000	5.93	0.00	0.00	3.79
1494	1509	5.620738	TGAGAGCATGCCTATTAGAAACT	57.379	39.130	15.66	0.00	0.00	2.66
1514	1529	4.344865	GGAACCAGCTTCCCGCCA	62.345	66.667	0.00	0.00	42.75	5.69
1515	1530	2.044946	GAACCAGCTTCCCGCCAT	60.045	61.111	0.00	0.00	40.39	4.40
1516	1531	2.361610	AACCAGCTTCCCGCCATG	60.362	61.111	0.00	0.00	40.39	3.66
1584	1615	3.865383	CGCTAGCCCTGCATCCCA	61.865	66.667	9.66	0.00	0.00	4.37
1587	1618	2.286045	TAGCCCTGCATCCCACCA	60.286	61.111	0.00	0.00	0.00	4.17
1607	1638	2.100631	CGGCCGTCTCCACATCAAC	61.101	63.158	19.50	0.00	0.00	3.18
1609	1640	0.321653	GGCCGTCTCCACATCAACTT	60.322	55.000	0.00	0.00	0.00	2.66
1626	1657	2.915869	ACTTGATCTGGGTACTTGGGA	58.084	47.619	0.00	0.00	0.00	4.37
1627	1658	2.572104	ACTTGATCTGGGTACTTGGGAC	59.428	50.000	0.00	0.00	0.00	4.46
1646	1677	4.626081	GTGCCACTCACGCCCAGT	62.626	66.667	0.00	0.00	35.76	4.00
1669	1700	3.790437	CATGGCCCAGGCTCGAGT	61.790	66.667	15.13	0.00	41.60	4.18
1691	1722	4.393990	GTGGCGGTAATTTAGTAGCAGTTT	59.606	41.667	0.00	0.00	0.00	2.66
1696	1727	6.672357	GCGGTAATTTAGTAGCAGTTTGACAG	60.672	42.308	0.00	0.00	0.00	3.51
1711	1742	6.256104	CAGTTTGACAGAAAACATTGCATCAA	59.744	34.615	0.00	0.00	41.56	2.57
1834	1869	6.670233	ACAAAAGTTACAAGTTCAAACACGA	58.330	32.000	0.00	0.00	0.00	4.35
1915	1954	6.706270	TGGTAAAAAGTTCAAGTTGCAAAACA	59.294	30.769	12.85	0.00	0.00	2.83
1933	1972	6.313658	GCAAAACAAGAGAAGTCCAAAACATT	59.686	34.615	0.00	0.00	0.00	2.71
1937	1976	7.497925	ACAAGAGAAGTCCAAAACATTACTC	57.502	36.000	0.00	0.00	0.00	2.59
1941	1982	7.234355	AGAGAAGTCCAAAACATTACTCCAAT	58.766	34.615	0.00	0.00	0.00	3.16
2065	2107	9.316730	GATACCGTAAACCATTGAATAGTTACA	57.683	33.333	0.00	0.00	0.00	2.41
2085	2127	5.855740	ACAAGGAAAACCATACCGAAAAA	57.144	34.783	0.00	0.00	0.00	1.94
2109	2151	5.825679	AGCAGAGTAAAGTCGAGTCTATGAT	59.174	40.000	6.32	0.00	0.00	2.45
2134	2176	2.300723	ACGCTCAGTACAAACCCATACA	59.699	45.455	0.00	0.00	0.00	2.29
2142	2184	5.351465	CAGTACAAACCCATACAGACATCAC	59.649	44.000	0.00	0.00	0.00	3.06
2162	2204	8.902806	ACATCACTTCAAATACTCTGTTTTTGA	58.097	29.630	10.59	10.59	39.99	2.69
2166	2208	9.573133	CACTTCAAATACTCTGTTTTTGAAACT	57.427	29.630	20.49	11.71	45.24	2.66
2219	2269	5.164233	CACACACATAGATCAGTTCGAGTT	58.836	41.667	0.00	0.00	0.00	3.01
2230	2280	8.696410	AGATCAGTTCGAGTTCTCTATTTTTC	57.304	34.615	0.00	0.00	0.00	2.29
2231	2281	6.929587	TCAGTTCGAGTTCTCTATTTTTCG	57.070	37.500	0.00	0.00	0.00	3.46
2232	2282	6.675026	TCAGTTCGAGTTCTCTATTTTTCGA	58.325	36.000	0.00	0.00	35.55	3.71
2234	2284	7.485277	TCAGTTCGAGTTCTCTATTTTTCGATC	59.515	37.037	0.00	0.00	37.00	3.69
2235	2285	6.469595	AGTTCGAGTTCTCTATTTTTCGATCG	59.530	38.462	9.36	9.36	37.00	3.69
2236	2286	5.271625	TCGAGTTCTCTATTTTTCGATCGG	58.728	41.667	16.41	0.00	32.80	4.18
2237	2287	5.065602	TCGAGTTCTCTATTTTTCGATCGGA	59.934	40.000	16.41	2.60	32.80	4.55
2238	2288	5.742453	CGAGTTCTCTATTTTTCGATCGGAA	59.258	40.000	16.41	10.66	0.00	4.30
2239	2289	6.252869	CGAGTTCTCTATTTTTCGATCGGAAA	59.747	38.462	17.61	17.61	42.75	3.13
2255	2307	6.293407	CGATCGGAAAATAGCACAATTGGTAT	60.293	38.462	7.38	1.17	46.30	2.73
2259	2311	6.273071	GGAAAATAGCACAATTGGTATCACC	58.727	40.000	10.83	5.21	44.09	4.02
2264	2316	4.523083	AGCACAATTGGTATCACCGTATT	58.477	39.130	10.83	0.00	42.58	1.89

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
601	602	5.844516	TCACCGATCTATCCCTTTTCCTAAT	59.155	40.000	0.00	0.00	0.00	1.73
656	657	3.264193	TGTTAAGCCACCTGAGATGTCAT	59.736	43.478	0.00	0.00	30.18	3.06
904	905	3.684788	GCCGTCAAACATCTTCTGTGTAT	59.315	43.478	0.00	0.00	38.39	2.29
940	941	0.776810	TTGGATGGCCAGTTCCTTCA	59.223	50.000	23.06	3.51	46.91	3.02
1028	1029	1.250328	CTGCAGCCAAACCATTCTGA	58.750	50.000	0.00	0.00	0.00	3.27
1076	1077	1.207089	TGAAGCTGTCCTCCGGTATTG	59.793	52.381	0.00	0.00	0.00	1.90
1256	1258	3.181433	TGCCGATATCTTCTAGGACCAGA	60.181	47.826	0.34	0.00	0.00	3.86
1323	1325	3.788227	AGAAACCAAGACATGCCTACA	57.212	42.857	0.00	0.00	0.00	2.74
1325	1327	4.098914	ACAAGAAACCAAGACATGCCTA	57.901	40.909	0.00	0.00	0.00	3.93
1326	1328	2.949447	ACAAGAAACCAAGACATGCCT	58.051	42.857	0.00	0.00	0.00	4.75
1330	1332	7.823745	ACAGAAATACAAGAAACCAAGACAT	57.176	32.000	0.00	0.00	0.00	3.06
1333	1335	8.974060	AACTACAGAAATACAAGAAACCAAGA	57.026	30.769	0.00	0.00	0.00	3.02
1348	1350	6.310224	GCAGCAAAAACAGAAAACTACAGAAA	59.690	34.615	0.00	0.00	0.00	2.52
1349	1351	5.804979	GCAGCAAAAACAGAAAACTACAGAA	59.195	36.000	0.00	0.00	0.00	3.02
1351	1353	5.230726	CAGCAGCAAAAACAGAAAACTACAG	59.769	40.000	0.00	0.00	0.00	2.74
1352	1354	5.101628	CAGCAGCAAAAACAGAAAACTACA	58.898	37.500	0.00	0.00	0.00	2.74
1353	1355	4.504097	CCAGCAGCAAAAACAGAAAACTAC	59.496	41.667	0.00	0.00	0.00	2.73
1354	1356	4.441356	CCCAGCAGCAAAAACAGAAAACTA	60.441	41.667	0.00	0.00	0.00	2.24
1356	1358	2.609002	CCCAGCAGCAAAAACAGAAAAC	59.391	45.455	0.00	0.00	0.00	2.43
1363	1365	0.673437	TACAGCCCAGCAGCAAAAAC	59.327	50.000	0.00	0.00	34.23	2.43
1364	1366	0.673437	GTACAGCCCAGCAGCAAAAA	59.327	50.000	0.00	0.00	34.23	1.94
1370	1381	2.125512	GACGGTACAGCCCAGCAG	60.126	66.667	0.00	0.00	0.00	4.24
1374	1385	3.000819	CCAGGACGGTACAGCCCA	61.001	66.667	0.64	0.00	0.00	5.36
1388	1399	2.354203	GGAGAACTAGACCTGCAACCAG	60.354	54.545	0.00	0.00	38.85	4.00
1390	1401	1.903183	AGGAGAACTAGACCTGCAACC	59.097	52.381	0.00	0.00	32.39	3.77
1425	1436	1.681229	AGGGAAGCAGGGGAAATACA	58.319	50.000	0.00	0.00	0.00	2.29
1426	1437	2.242452	AGAAGGGAAGCAGGGGAAATAC	59.758	50.000	0.00	0.00	0.00	1.89
1427	1438	2.573463	AGAAGGGAAGCAGGGGAAATA	58.427	47.619	0.00	0.00	0.00	1.40
1428	1439	1.387119	AGAAGGGAAGCAGGGGAAAT	58.613	50.000	0.00	0.00	0.00	2.17
1429	1440	2.053747	TAGAAGGGAAGCAGGGGAAA	57.946	50.000	0.00	0.00	0.00	3.13
1430	1441	2.053747	TTAGAAGGGAAGCAGGGGAA	57.946	50.000	0.00	0.00	0.00	3.97
1432	1443	4.519906	TTTATTAGAAGGGAAGCAGGGG	57.480	45.455	0.00	0.00	0.00	4.79
1433	1444	6.238759	CGAATTTTATTAGAAGGGAAGCAGGG	60.239	42.308	0.00	0.00	0.00	4.45
1435	1446	6.729187	CCGAATTTTATTAGAAGGGAAGCAG	58.271	40.000	0.00	0.00	0.00	4.24
1436	1447	5.067283	GCCGAATTTTATTAGAAGGGAAGCA	59.933	40.000	0.00	0.00	0.00	3.91
1437	1448	5.507482	GGCCGAATTTTATTAGAAGGGAAGC	60.507	44.000	0.00	0.00	0.00	3.86
1444	1459	4.439016	GCCGTTGGCCGAATTTTATTAGAA	60.439	41.667	0.00	0.00	44.06	2.10
1464	1479	2.768492	GCATGCTCTCAAAGGGCCG	61.768	63.158	11.37	0.00	0.00	6.13
1472	1487	5.620738	AGTTTCTAATAGGCATGCTCTCA	57.379	39.130	18.92	0.37	0.00	3.27
1479	1494	7.208064	TGGTTCCTTAGTTTCTAATAGGCAT	57.792	36.000	0.00	0.00	0.00	4.40
1480	1495	6.630203	TGGTTCCTTAGTTTCTAATAGGCA	57.370	37.500	0.00	0.00	0.00	4.75
1535	1550	4.312231	CAGTGCAACACGCGGTGG	62.312	66.667	12.47	4.21	46.97	4.61
1566	1597	3.866582	GGGATGCAGGGCTAGCGT	61.867	66.667	9.00	0.00	33.85	5.07
1587	1618	4.148825	GATGTGGAGACGGCCGCT	62.149	66.667	28.58	23.48	39.20	5.52
1607	1638	2.571653	TGTCCCAAGTACCCAGATCAAG	59.428	50.000	0.00	0.00	0.00	3.02
1609	1640	2.187958	CTGTCCCAAGTACCCAGATCA	58.812	52.381	0.00	0.00	0.00	2.92
1626	1657	4.626081	GGGCGTGAGTGGCACTGT	62.626	66.667	27.45	0.70	45.49	3.55
1627	1658	4.624364	TGGGCGTGAGTGGCACTG	62.624	66.667	27.45	12.21	45.49	3.66
1646	1677	2.060567	GAGCCTGGGCCATGATAGCA	62.061	60.000	13.44	0.00	43.17	3.49
1650	1681	2.769621	TCGAGCCTGGGCCATGAT	60.770	61.111	13.44	6.05	43.17	2.45
1669	1700	3.899052	ACTGCTACTAAATTACCGCCA	57.101	42.857	0.00	0.00	0.00	5.69
1671	1702	5.121142	TGTCAAACTGCTACTAAATTACCGC	59.879	40.000	0.00	0.00	0.00	5.68
1691	1722	6.751157	AGAATTGATGCAATGTTTTCTGTCA	58.249	32.000	0.00	0.00	34.04	3.58
1696	1727	6.033196	CGAGTGAGAATTGATGCAATGTTTTC	59.967	38.462	0.00	0.00	34.04	2.29
1711	1742	7.604657	AATTTACTATCCCTCGAGTGAGAAT	57.395	36.000	12.31	0.00	45.57	2.40
1747	1778	5.503662	TTTTCCTTCGAACTTTTGGTACC	57.496	39.130	4.43	4.43	0.00	3.34
1819	1854	2.616842	GGGTCATCGTGTTTGAACTTGT	59.383	45.455	0.00	0.00	31.32	3.16
1907	1946	5.167845	GTTTTGGACTTCTCTTGTTTTGCA	58.832	37.500	0.00	0.00	0.00	4.08
1915	1954	6.601332	TGGAGTAATGTTTTGGACTTCTCTT	58.399	36.000	0.00	0.00	0.00	2.85
2065	2107	4.342665	TGCTTTTTCGGTATGGTTTTCCTT	59.657	37.500	0.00	0.00	41.38	3.36
2085	2127	5.186942	TCATAGACTCGACTTTACTCTGCT	58.813	41.667	0.00	0.00	0.00	4.24
2109	2151	2.102757	TGGGTTTGTACTGAGCGTGTTA	59.897	45.455	0.00	0.00	0.00	2.41
2134	2176	8.682936	AAAACAGAGTATTTGAAGTGATGTCT	57.317	30.769	0.00	0.00	0.00	3.41
2230	2280	4.201910	ACCAATTGTGCTATTTTCCGATCG	60.202	41.667	8.51	8.51	0.00	3.69
2231	2281	5.248870	ACCAATTGTGCTATTTTCCGATC	57.751	39.130	4.43	0.00	0.00	3.69
2232	2282	6.545666	TGATACCAATTGTGCTATTTTCCGAT	59.454	34.615	4.43	0.00	0.00	4.18
2234	2284	5.971202	GTGATACCAATTGTGCTATTTTCCG	59.029	40.000	4.43	0.00	0.00	4.30
2235	2285	6.273071	GGTGATACCAATTGTGCTATTTTCC	58.727	40.000	4.43	0.00	38.42	3.13
2236	2286	5.971202	CGGTGATACCAATTGTGCTATTTTC	59.029	40.000	4.43	0.00	38.47	2.29
2237	2287	5.417580	ACGGTGATACCAATTGTGCTATTTT	59.582	36.000	4.43	0.00	38.47	1.82
2238	2288	4.947388	ACGGTGATACCAATTGTGCTATTT	59.053	37.500	4.43	0.00	38.47	1.40
2239	2289	4.523083	ACGGTGATACCAATTGTGCTATT	58.477	39.130	4.43	0.00	38.47	1.73
2241	2291	3.620427	ACGGTGATACCAATTGTGCTA	57.380	42.857	4.43	0.00	38.47	3.49
2243	2293	4.261031	GGAATACGGTGATACCAATTGTGC	60.261	45.833	4.43	0.00	38.47	4.57
2244	2294	4.878971	TGGAATACGGTGATACCAATTGTG	59.121	41.667	4.43	0.00	38.47	3.33
2255	2307	6.703319	TGAAGAGTAATTTGGAATACGGTGA	58.297	36.000	0.00	0.00	0.00	4.02
2259	2311	9.840427	AAATGTTGAAGAGTAATTTGGAATACG	57.160	29.630	0.00	0.00	0.00	3.06
2264	2316	8.690203	TCTCAAATGTTGAAGAGTAATTTGGA	57.310	30.769	6.59	1.85	39.58	3.53

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.