Multiple sequence alignment - TraesCS7B01G198400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G198400 chr7B 100.000 3841 0 0 1 3841 352715817 352719657 0.000000e+00 7094.0
1 TraesCS7B01G198400 chr7B 95.469 309 14 0 296 604 704665667 704665359 9.590000e-136 494.0
2 TraesCS7B01G198400 chr7B 94.098 305 18 0 296 600 731129224 731129528 7.520000e-127 464.0
3 TraesCS7B01G198400 chr7D 92.203 1475 66 18 651 2102 349945227 349946675 0.000000e+00 2041.0
4 TraesCS7B01G198400 chr7D 93.013 1145 48 15 2098 3233 349946744 349947865 0.000000e+00 1642.0
5 TraesCS7B01G198400 chr7D 94.137 307 18 0 295 601 82851131 82851437 5.810000e-128 468.0
6 TraesCS7B01G198400 chr7D 91.640 311 21 4 3518 3827 349950011 349950317 3.550000e-115 425.0
7 TraesCS7B01G198400 chr3A 91.523 1451 60 20 681 2102 72670453 72671869 0.000000e+00 1940.0
8 TraesCS7B01G198400 chr3A 94.196 1051 48 8 2098 3138 72671938 72672985 0.000000e+00 1591.0
9 TraesCS7B01G198400 chr3A 92.732 743 40 11 2398 3129 72493249 72492510 0.000000e+00 1061.0
10 TraesCS7B01G198400 chr3A 92.614 176 13 0 2 177 72669783 72669958 1.770000e-63 254.0
11 TraesCS7B01G198400 chr2A 96.066 305 12 0 296 600 434579960 434580264 7.410000e-137 497.0
12 TraesCS7B01G198400 chr2A 77.570 214 44 4 3606 3817 330712512 330712723 4.030000e-25 126.0
13 TraesCS7B01G198400 chr2B 93.375 317 19 2 286 601 734073830 734073515 5.810000e-128 468.0
14 TraesCS7B01G198400 chr2B 94.118 306 17 1 296 601 142654524 142654828 7.520000e-127 464.0
15 TraesCS7B01G198400 chr2B 87.611 113 13 1 3279 3391 616933169 616933058 3.110000e-26 130.0
16 TraesCS7B01G198400 chr2B 86.957 115 13 2 3279 3392 200522152 200522039 1.120000e-25 128.0
17 TraesCS7B01G198400 chr2B 83.333 84 6 7 3410 3490 151220588 151220510 1.910000e-08 71.3
18 TraesCS7B01G198400 chr2B 82.759 87 7 7 3407 3490 377925816 377925897 1.910000e-08 71.3
19 TraesCS7B01G198400 chr2B 83.333 84 6 7 3410 3490 592682855 592682777 1.910000e-08 71.3
20 TraesCS7B01G198400 chr1B 94.389 303 17 0 296 598 683992175 683991873 2.090000e-127 466.0
21 TraesCS7B01G198400 chr1B 94.098 305 18 0 296 600 662015018 662015322 7.520000e-127 464.0
22 TraesCS7B01G198400 chr1B 86.555 119 13 3 3279 3397 200471752 200471637 1.120000e-25 128.0
23 TraesCS7B01G198400 chr1B 83.333 84 6 7 3410 3490 223595857 223595779 1.910000e-08 71.3
24 TraesCS7B01G198400 chr2D 93.831 308 18 1 296 603 632796365 632796059 2.700000e-126 462.0
25 TraesCS7B01G198400 chr2D 87.719 114 13 1 3279 3392 257443023 257443135 8.660000e-27 132.0
26 TraesCS7B01G198400 chr6B 87.719 114 13 1 3279 3392 30348355 30348243 8.660000e-27 132.0
27 TraesCS7B01G198400 chr3D 87.611 113 13 1 3279 3391 600658250 600658139 3.110000e-26 130.0
28 TraesCS7B01G198400 chr6D 87.500 112 13 1 3279 3390 358593040 358592930 1.120000e-25 128.0
29 TraesCS7B01G198400 chr6D 86.842 114 14 1 3279 3392 416447311 416447199 4.030000e-25 126.0
30 TraesCS7B01G198400 chr4A 86.957 115 14 1 3279 3393 472926004 472926117 1.120000e-25 128.0
31 TraesCS7B01G198400 chr4D 87.324 71 9 0 223 293 159589121 159589191 8.840000e-12 82.4
32 TraesCS7B01G198400 chr3B 84.524 84 5 7 3410 3490 37532261 37532183 4.110000e-10 76.8
33 TraesCS7B01G198400 chr3B 83.908 87 6 7 3407 3490 511697134 511697215 4.110000e-10 76.8
34 TraesCS7B01G198400 chr7A 82.759 87 7 7 3407 3490 460055878 460055959 1.910000e-08 71.3
35 TraesCS7B01G198400 chr5B 83.333 84 6 7 3410 3490 338047225 338047147 1.910000e-08 71.3
36 TraesCS7B01G198400 chr5A 83.333 84 6 7 3410 3490 221820741 221820663 1.910000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G198400 chr7B 352715817 352719657 3840 False 7094.000000 7094 100.000000 1 3841 1 chr7B.!!$F1 3840
1 TraesCS7B01G198400 chr7D 349945227 349950317 5090 False 1369.333333 2041 92.285333 651 3827 3 chr7D.!!$F2 3176
2 TraesCS7B01G198400 chr3A 72669783 72672985 3202 False 1261.666667 1940 92.777667 2 3138 3 chr3A.!!$F1 3136
3 TraesCS7B01G198400 chr3A 72492510 72493249 739 True 1061.000000 1061 92.732000 2398 3129 1 chr3A.!!$R1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 821 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.0 0.0 0.00 2.69 F
542 823 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.0 0.0 0.0 0.00 3.18 F
1911 2260 0.105964 TGCACCTTCGTGTTGTAGCT 59.894 50.0 0.0 0.0 42.39 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 2116 0.100682 CAAGCAGCACATCAGCCATC 59.899 55.0 0.00 0.0 34.23 3.51 R
2170 2604 0.530744 CGTCTGGCCACTACTGCTAA 59.469 55.0 0.00 0.0 0.00 3.09 R
3772 6241 0.333312 TTGGGGTGTCACAAACCTGT 59.667 50.0 5.12 0.0 37.85 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.677288 TACACCCTGTCTTCCACGTG 59.323 55.000 9.08 9.08 0.00 4.49
56 57 0.600255 CACCCTGTCTTCCACGTGTC 60.600 60.000 15.65 0.26 0.00 3.67
60 61 1.278172 CTGTCTTCCACGTGTCGCAG 61.278 60.000 15.65 10.91 0.00 5.18
89 90 4.554036 GCTCCTCCCCGGCATCAC 62.554 72.222 0.00 0.00 0.00 3.06
121 122 1.230635 GCTGCCAACGAGCTCTGAAA 61.231 55.000 12.85 0.00 33.37 2.69
130 131 0.784778 GAGCTCTGAAAACACGACGG 59.215 55.000 6.43 0.00 0.00 4.79
134 135 0.748450 TCTGAAAACACGACGGTCCT 59.252 50.000 1.91 0.00 0.00 3.85
136 137 0.460722 TGAAAACACGACGGTCCTGA 59.539 50.000 12.99 0.00 0.00 3.86
188 414 0.606401 AACAACATCCCAGAGTGGCG 60.606 55.000 0.00 0.00 35.79 5.69
192 418 1.296392 CATCCCAGAGTGGCGTTGA 59.704 57.895 0.00 0.00 35.79 3.18
196 422 2.029073 CAGAGTGGCGTTGACGGT 59.971 61.111 5.62 0.00 40.23 4.83
200 426 3.041940 GTGGCGTTGACGGTCCAG 61.042 66.667 5.55 0.00 40.23 3.86
209 435 2.927856 ACGGTCCAGCCCATCACA 60.928 61.111 0.00 0.00 0.00 3.58
212 438 1.304282 GGTCCAGCCCATCACATGT 59.696 57.895 0.00 0.00 0.00 3.21
214 440 0.813184 GTCCAGCCCATCACATGTTG 59.187 55.000 0.00 0.00 0.00 3.33
229 510 3.558418 ACATGTTGTACTTGACACGAACC 59.442 43.478 0.00 0.00 37.96 3.62
230 511 2.553086 TGTTGTACTTGACACGAACCC 58.447 47.619 0.00 0.00 37.96 4.11
238 519 0.906775 TGACACGAACCCTATTCCCC 59.093 55.000 0.00 0.00 0.00 4.81
252 533 4.950475 CCTATTCCCCTTTTCCTGTTCTTC 59.050 45.833 0.00 0.00 0.00 2.87
266 547 4.440250 CCTGTTCTTCGATTCGTGTATCCT 60.440 45.833 5.89 0.00 0.00 3.24
268 549 6.198650 TGTTCTTCGATTCGTGTATCCTAA 57.801 37.500 5.89 0.00 0.00 2.69
273 554 4.357142 TCGATTCGTGTATCCTAACTTGC 58.643 43.478 5.89 0.00 0.00 4.01
276 557 5.234329 CGATTCGTGTATCCTAACTTGCAAT 59.766 40.000 0.00 0.00 0.00 3.56
277 558 6.562270 CGATTCGTGTATCCTAACTTGCAATC 60.562 42.308 0.00 0.00 0.00 2.67
296 577 3.587797 TCGCAACTCGAGTTATTCCTT 57.412 42.857 29.28 3.98 43.16 3.36
297 578 3.921677 TCGCAACTCGAGTTATTCCTTT 58.078 40.909 29.28 3.15 43.16 3.11
298 579 4.312443 TCGCAACTCGAGTTATTCCTTTT 58.688 39.130 29.28 2.35 43.16 2.27
299 580 4.753107 TCGCAACTCGAGTTATTCCTTTTT 59.247 37.500 29.28 1.54 43.16 1.94
324 605 6.480524 TTGAACATCAGTACATACACAAGC 57.519 37.500 0.00 0.00 0.00 4.01
325 606 4.625311 TGAACATCAGTACATACACAAGCG 59.375 41.667 0.00 0.00 0.00 4.68
326 607 2.930040 ACATCAGTACATACACAAGCGC 59.070 45.455 0.00 0.00 0.00 5.92
327 608 3.190079 CATCAGTACATACACAAGCGCT 58.810 45.455 2.64 2.64 0.00 5.92
328 609 2.876091 TCAGTACATACACAAGCGCTC 58.124 47.619 12.06 0.00 0.00 5.03
329 610 2.230266 TCAGTACATACACAAGCGCTCA 59.770 45.455 12.06 0.00 0.00 4.26
330 611 3.119137 TCAGTACATACACAAGCGCTCAT 60.119 43.478 12.06 0.00 0.00 2.90
331 612 4.097286 TCAGTACATACACAAGCGCTCATA 59.903 41.667 12.06 0.81 0.00 2.15
332 613 4.984785 CAGTACATACACAAGCGCTCATAT 59.015 41.667 12.06 3.50 0.00 1.78
333 614 6.016610 TCAGTACATACACAAGCGCTCATATA 60.017 38.462 12.06 1.64 0.00 0.86
334 615 6.088217 CAGTACATACACAAGCGCTCATATAC 59.912 42.308 12.06 5.98 0.00 1.47
335 616 4.944048 ACATACACAAGCGCTCATATACA 58.056 39.130 12.06 0.00 0.00 2.29
336 617 4.745125 ACATACACAAGCGCTCATATACAC 59.255 41.667 12.06 0.00 0.00 2.90
337 618 3.245518 ACACAAGCGCTCATATACACA 57.754 42.857 12.06 0.00 0.00 3.72
338 619 3.797039 ACACAAGCGCTCATATACACAT 58.203 40.909 12.06 0.00 0.00 3.21
339 620 3.557185 ACACAAGCGCTCATATACACATG 59.443 43.478 12.06 3.16 0.00 3.21
340 621 2.545526 ACAAGCGCTCATATACACATGC 59.454 45.455 12.06 0.00 0.00 4.06
341 622 2.531522 AGCGCTCATATACACATGCA 57.468 45.000 2.64 0.00 0.00 3.96
342 623 3.049708 AGCGCTCATATACACATGCAT 57.950 42.857 2.64 0.00 0.00 3.96
343 624 4.192429 AGCGCTCATATACACATGCATA 57.808 40.909 2.64 0.00 0.00 3.14
344 625 3.928992 AGCGCTCATATACACATGCATAC 59.071 43.478 2.64 0.00 0.00 2.39
345 626 3.679502 GCGCTCATATACACATGCATACA 59.320 43.478 0.00 0.00 0.00 2.29
346 627 4.434725 GCGCTCATATACACATGCATACAC 60.435 45.833 0.00 0.00 0.00 2.90
347 628 4.925646 CGCTCATATACACATGCATACACT 59.074 41.667 0.00 0.00 0.00 3.55
348 629 5.061435 CGCTCATATACACATGCATACACTC 59.939 44.000 0.00 0.00 0.00 3.51
349 630 5.928264 GCTCATATACACATGCATACACTCA 59.072 40.000 0.00 0.00 0.00 3.41
350 631 6.592994 GCTCATATACACATGCATACACTCAT 59.407 38.462 0.00 0.00 0.00 2.90
351 632 7.201504 GCTCATATACACATGCATACACTCATC 60.202 40.741 0.00 0.00 0.00 2.92
352 633 7.099120 TCATATACACATGCATACACTCATCC 58.901 38.462 0.00 0.00 0.00 3.51
353 634 2.923121 ACACATGCATACACTCATCCC 58.077 47.619 0.00 0.00 0.00 3.85
354 635 2.507058 ACACATGCATACACTCATCCCT 59.493 45.455 0.00 0.00 0.00 4.20
355 636 3.711190 ACACATGCATACACTCATCCCTA 59.289 43.478 0.00 0.00 0.00 3.53
356 637 4.349048 ACACATGCATACACTCATCCCTAT 59.651 41.667 0.00 0.00 0.00 2.57
357 638 4.694037 CACATGCATACACTCATCCCTATG 59.306 45.833 0.00 0.00 0.00 2.23
358 639 4.594491 ACATGCATACACTCATCCCTATGA 59.406 41.667 0.00 0.00 39.87 2.15
359 640 5.072193 ACATGCATACACTCATCCCTATGAA 59.928 40.000 0.00 0.00 41.57 2.57
360 641 4.960938 TGCATACACTCATCCCTATGAAC 58.039 43.478 0.00 0.00 41.57 3.18
361 642 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
362 643 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
363 644 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
364 645 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
365 646 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
366 647 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
367 648 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
368 649 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
369 650 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
370 651 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
371 652 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
372 653 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
373 654 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
374 655 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
375 656 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
378 659 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
379 660 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
380 661 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
381 662 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
382 663 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
383 664 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
384 665 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
385 666 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
386 667 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
387 668 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
388 669 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
389 670 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
390 671 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
391 672 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
392 673 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
393 674 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
394 675 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
395 676 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
396 677 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
397 678 2.511452 CCCCTATGAGCACCTCCGG 61.511 68.421 0.00 0.00 0.00 5.14
398 679 1.457643 CCCTATGAGCACCTCCGGA 60.458 63.158 2.93 2.93 0.00 5.14
399 680 1.048724 CCCTATGAGCACCTCCGGAA 61.049 60.000 5.23 0.00 0.00 4.30
400 681 0.390860 CCTATGAGCACCTCCGGAAG 59.609 60.000 5.23 0.57 0.00 3.46
412 693 4.697756 CGGAAGGTTGAGCCGGCA 62.698 66.667 31.54 5.56 43.70 5.69
413 694 2.044946 GGAAGGTTGAGCCGGCAT 60.045 61.111 31.54 14.28 43.70 4.40
414 695 1.223487 GGAAGGTTGAGCCGGCATA 59.777 57.895 31.54 14.63 43.70 3.14
415 696 0.179018 GGAAGGTTGAGCCGGCATAT 60.179 55.000 31.54 8.11 43.70 1.78
416 697 1.230324 GAAGGTTGAGCCGGCATATC 58.770 55.000 31.54 18.63 43.70 1.63
417 698 0.546122 AAGGTTGAGCCGGCATATCA 59.454 50.000 31.54 21.33 43.70 2.15
418 699 0.767375 AGGTTGAGCCGGCATATCAT 59.233 50.000 31.54 6.18 43.70 2.45
419 700 1.160137 GGTTGAGCCGGCATATCATC 58.840 55.000 31.54 20.99 0.00 2.92
420 701 1.271054 GGTTGAGCCGGCATATCATCT 60.271 52.381 31.54 4.27 0.00 2.90
421 702 2.498167 GTTGAGCCGGCATATCATCTT 58.502 47.619 31.54 3.33 0.00 2.40
422 703 2.174363 TGAGCCGGCATATCATCTTG 57.826 50.000 31.54 0.00 0.00 3.02
423 704 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
424 705 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
425 706 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
426 707 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
427 708 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
428 709 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
429 710 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
430 711 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
431 712 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
432 713 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
433 714 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
434 715 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
435 716 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
436 717 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
437 718 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
438 719 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
439 720 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
440 721 4.482386 TCTTGAGATTTACGAAGTCACCG 58.518 43.478 0.00 0.00 43.93 4.94
441 722 3.928727 TGAGATTTACGAAGTCACCGT 57.071 42.857 0.00 0.00 43.93 4.83
442 723 5.181811 TCTTGAGATTTACGAAGTCACCGTA 59.818 40.000 0.00 0.00 43.93 4.02
443 724 4.978186 TGAGATTTACGAAGTCACCGTAG 58.022 43.478 0.00 0.00 43.93 3.51
456 737 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
457 738 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
478 759 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
479 760 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
480 761 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
481 762 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
482 763 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
483 764 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
484 765 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
485 766 0.615331 GTCTCCTCCCACTGAATGCA 59.385 55.000 0.00 0.00 0.00 3.96
486 767 0.615331 TCTCCTCCCACTGAATGCAC 59.385 55.000 0.00 0.00 0.00 4.57
487 768 0.325933 CTCCTCCCACTGAATGCACA 59.674 55.000 0.00 0.00 0.00 4.57
488 769 0.994247 TCCTCCCACTGAATGCACAT 59.006 50.000 0.00 0.00 0.00 3.21
489 770 1.065199 TCCTCCCACTGAATGCACATC 60.065 52.381 0.00 0.00 0.00 3.06
490 771 1.012086 CTCCCACTGAATGCACATCG 58.988 55.000 0.00 0.00 0.00 3.84
491 772 1.026182 TCCCACTGAATGCACATCGC 61.026 55.000 0.00 0.00 42.89 4.58
492 773 1.430632 CCACTGAATGCACATCGCC 59.569 57.895 0.00 0.00 41.33 5.54
493 774 1.061411 CACTGAATGCACATCGCCG 59.939 57.895 0.00 0.00 41.33 6.46
494 775 2.108514 ACTGAATGCACATCGCCGG 61.109 57.895 0.00 0.00 41.33 6.13
495 776 1.815003 CTGAATGCACATCGCCGGA 60.815 57.895 5.05 0.00 41.33 5.14
496 777 1.368345 CTGAATGCACATCGCCGGAA 61.368 55.000 5.05 0.00 41.33 4.30
497 778 0.957888 TGAATGCACATCGCCGGAAA 60.958 50.000 5.05 0.00 41.33 3.13
498 779 0.381801 GAATGCACATCGCCGGAAAT 59.618 50.000 5.05 0.00 41.33 2.17
499 780 0.381801 AATGCACATCGCCGGAAATC 59.618 50.000 5.05 0.00 41.33 2.17
500 781 1.447317 ATGCACATCGCCGGAAATCC 61.447 55.000 5.05 0.00 41.33 3.01
501 782 1.819632 GCACATCGCCGGAAATCCT 60.820 57.895 5.05 0.00 32.94 3.24
502 783 2.016961 CACATCGCCGGAAATCCTG 58.983 57.895 5.05 0.00 0.00 3.86
503 784 0.461870 CACATCGCCGGAAATCCTGA 60.462 55.000 5.05 0.00 0.00 3.86
504 785 0.251916 ACATCGCCGGAAATCCTGAA 59.748 50.000 5.05 0.00 0.00 3.02
505 786 1.339631 ACATCGCCGGAAATCCTGAAA 60.340 47.619 5.05 0.00 0.00 2.69
506 787 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
507 788 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
508 789 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
509 790 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
510 791 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
511 792 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
512 793 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
513 794 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
514 795 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
515 796 5.827797 CCGGAAATCCTGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
516 797 6.321181 CCGGAAATCCTGAAATAAATCCAGAA 59.679 38.462 0.00 0.00 0.00 3.02
517 798 7.147915 CCGGAAATCCTGAAATAAATCCAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
518 799 8.416329 CGGAAATCCTGAAATAAATCCAGAAAT 58.584 33.333 0.00 0.00 0.00 2.17
525 806 8.971321 CCTGAAATAAATCCAGAAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
526 807 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
527 808 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
528 809 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
529 810 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
530 811 4.558538 ATCCAGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
531 812 2.682856 TCCAGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
532 813 2.423185 CCAGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
533 814 3.488047 CCAGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.00 0.00 4.00
534 815 2.684881 AGAAATAAATGCGAGCACCAGG 59.315 45.455 0.00 0.00 0.00 4.45
535 816 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
536 817 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
537 818 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
538 819 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
539 820 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
540 821 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
541 822 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
542 823 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
543 824 1.522668 CGAGCACCAGGATTTGAACA 58.477 50.000 0.00 0.00 0.00 3.18
544 825 1.197721 CGAGCACCAGGATTTGAACAC 59.802 52.381 0.00 0.00 0.00 3.32
545 826 2.508526 GAGCACCAGGATTTGAACACT 58.491 47.619 0.00 0.00 0.00 3.55
546 827 2.227388 GAGCACCAGGATTTGAACACTG 59.773 50.000 0.00 0.00 0.00 3.66
551 832 3.347216 CCAGGATTTGAACACTGGTAGG 58.653 50.000 0.00 0.00 44.21 3.18
552 833 2.749621 CAGGATTTGAACACTGGTAGGC 59.250 50.000 0.00 0.00 0.00 3.93
553 834 2.644798 AGGATTTGAACACTGGTAGGCT 59.355 45.455 0.00 0.00 0.00 4.58
554 835 2.749621 GGATTTGAACACTGGTAGGCTG 59.250 50.000 0.00 0.00 0.00 4.85
555 836 2.270352 TTTGAACACTGGTAGGCTGG 57.730 50.000 0.00 0.00 0.00 4.85
556 837 1.429930 TTGAACACTGGTAGGCTGGA 58.570 50.000 0.00 0.00 0.00 3.86
557 838 0.976641 TGAACACTGGTAGGCTGGAG 59.023 55.000 0.00 0.00 0.00 3.86
558 839 1.267121 GAACACTGGTAGGCTGGAGA 58.733 55.000 0.00 0.00 0.00 3.71
559 840 1.834263 GAACACTGGTAGGCTGGAGAT 59.166 52.381 0.00 0.00 0.00 2.75
560 841 2.848678 ACACTGGTAGGCTGGAGATA 57.151 50.000 0.00 0.00 0.00 1.98
561 842 2.389715 ACACTGGTAGGCTGGAGATAC 58.610 52.381 0.00 0.00 0.00 2.24
562 843 1.689273 CACTGGTAGGCTGGAGATACC 59.311 57.143 0.00 0.00 39.57 2.73
563 844 1.291033 ACTGGTAGGCTGGAGATACCA 59.709 52.381 4.60 4.60 45.13 3.25
564 845 1.689273 CTGGTAGGCTGGAGATACCAC 59.311 57.143 0.00 0.00 43.06 4.16
565 846 1.007842 TGGTAGGCTGGAGATACCACA 59.992 52.381 0.00 0.00 43.06 4.17
566 847 1.689273 GGTAGGCTGGAGATACCACAG 59.311 57.143 0.00 0.00 44.64 3.66
567 848 2.389715 GTAGGCTGGAGATACCACAGT 58.610 52.381 0.00 0.00 44.64 3.55
568 849 1.490574 AGGCTGGAGATACCACAGTC 58.509 55.000 0.00 0.00 44.64 3.51
569 850 0.466124 GGCTGGAGATACCACAGTCC 59.534 60.000 0.00 0.00 44.64 3.85
570 851 0.466124 GCTGGAGATACCACAGTCCC 59.534 60.000 0.00 0.00 44.64 4.46
571 852 1.967274 GCTGGAGATACCACAGTCCCT 60.967 57.143 0.00 0.00 44.64 4.20
572 853 2.035632 CTGGAGATACCACAGTCCCTC 58.964 57.143 0.00 0.00 44.64 4.30
573 854 1.646447 TGGAGATACCACAGTCCCTCT 59.354 52.381 0.00 0.00 44.64 3.69
574 855 2.856864 TGGAGATACCACAGTCCCTCTA 59.143 50.000 0.00 0.00 44.64 2.43
575 856 3.271225 TGGAGATACCACAGTCCCTCTAA 59.729 47.826 0.00 0.00 44.64 2.10
576 857 3.637694 GGAGATACCACAGTCCCTCTAAC 59.362 52.174 0.00 0.00 38.79 2.34
577 858 3.637694 GAGATACCACAGTCCCTCTAACC 59.362 52.174 0.00 0.00 0.00 2.85
578 859 3.012502 AGATACCACAGTCCCTCTAACCA 59.987 47.826 0.00 0.00 0.00 3.67
579 860 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
580 861 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
581 862 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
582 863 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
583 864 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
584 865 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
585 866 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
586 867 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
587 868 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
588 869 1.406887 CCCTCTAACCATCCAACCACG 60.407 57.143 0.00 0.00 0.00 4.94
589 870 1.406887 CCTCTAACCATCCAACCACGG 60.407 57.143 0.00 0.00 0.00 4.94
590 871 0.616371 TCTAACCATCCAACCACGGG 59.384 55.000 0.00 0.00 0.00 5.28
591 872 0.326927 CTAACCATCCAACCACGGGT 59.673 55.000 0.00 0.00 37.65 5.28
601 882 2.902846 CCACGGGTTGGTTCGCAA 60.903 61.111 0.00 0.00 41.10 4.85
602 883 2.330041 CACGGGTTGGTTCGCAAC 59.670 61.111 0.00 0.00 0.00 4.17
603 884 2.184167 CACGGGTTGGTTCGCAACT 61.184 57.895 0.00 0.00 33.41 3.16
604 885 1.890510 ACGGGTTGGTTCGCAACTC 60.891 57.895 0.00 0.00 33.41 3.01
605 886 2.943653 GGGTTGGTTCGCAACTCG 59.056 61.111 0.00 0.00 40.15 4.18
606 887 1.595929 GGGTTGGTTCGCAACTCGA 60.596 57.895 0.00 0.00 46.88 4.04
616 897 2.876091 TCGCAACTCGAGTTATTCCTG 58.124 47.619 29.28 18.12 43.16 3.86
626 907 6.039941 ACTCGAGTTATTCCTGAGACAATAGG 59.960 42.308 13.58 0.00 35.34 2.57
638 919 3.821421 GACAATAGGTCGATCCACCTT 57.179 47.619 17.73 0.00 45.24 3.50
801 1118 0.670546 CCCACGTCTCAGTTCGCATT 60.671 55.000 0.00 0.00 0.00 3.56
885 1202 5.430089 ACCAGCTATAAATTTCACCCTCTCT 59.570 40.000 0.00 0.00 0.00 3.10
888 1205 7.015682 CCAGCTATAAATTTCACCCTCTCTCTA 59.984 40.741 0.00 0.00 0.00 2.43
1053 1371 1.198759 GGAACCACCTAGACCCAGCA 61.199 60.000 0.00 0.00 35.41 4.41
1535 1856 1.536766 ACGGTCATTGCTGTTGTGATG 59.463 47.619 0.00 0.00 0.00 3.07
1562 1883 9.888878 CACTTATCATTTGTTTAGATGCTATGG 57.111 33.333 0.00 0.00 0.00 2.74
1577 1898 7.696981 AGATGCTATGGGATCTACATCAAATT 58.303 34.615 11.46 0.00 46.36 1.82
1614 1935 6.822442 TCAGTGTATGTTGTAGTCCTTGAAA 58.178 36.000 0.00 0.00 0.00 2.69
1658 2001 2.417933 GACTATTGTTGCACCTCTGCTG 59.582 50.000 0.00 0.00 44.57 4.41
1736 2079 4.725790 AAAAGCTGTTCTTTGAAGCAGT 57.274 36.364 0.00 0.00 43.84 4.40
1752 2095 1.002502 AGTAGCGGCCAGAAAACCC 60.003 57.895 2.24 0.00 0.00 4.11
1766 2109 5.047660 CCAGAAAACCCTAGAGATAGATCCG 60.048 48.000 0.00 0.00 0.00 4.18
1773 2116 3.631686 CCTAGAGATAGATCCGCAGATGG 59.368 52.174 0.00 0.00 30.90 3.51
1783 2126 1.235281 CCGCAGATGGATGGCTGATG 61.235 60.000 0.00 0.00 34.06 3.07
1874 2217 5.991328 AGTCAGCATTACACAAATATCCG 57.009 39.130 0.00 0.00 0.00 4.18
1911 2260 0.105964 TGCACCTTCGTGTTGTAGCT 59.894 50.000 0.00 0.00 42.39 3.32
1929 2278 9.175312 GTTGTAGCTGTGCTAGTAGGATATATA 57.825 37.037 0.00 0.00 42.11 0.86
1951 2301 1.959282 CTGGTGCAAAAGGAGAAGCTT 59.041 47.619 0.00 0.00 0.00 3.74
1970 2320 1.672356 CTCCTTTGTCACCAGCGGG 60.672 63.158 0.00 0.00 41.29 6.13
1989 2339 4.201783 GCGGGTAATGACAACTGTTGATAC 60.202 45.833 26.00 19.35 0.00 2.24
1990 2340 5.175859 CGGGTAATGACAACTGTTGATACT 58.824 41.667 26.00 4.27 0.00 2.12
2170 2604 2.417719 GTTCACACGATCCTGCTTCTT 58.582 47.619 0.00 0.00 0.00 2.52
2193 2627 2.181021 GTAGTGGCCAGACGACCG 59.819 66.667 5.11 0.00 0.00 4.79
2271 2705 9.581099 TGATTTCTTTCTTTGTTTCAACCTAAC 57.419 29.630 0.00 0.00 0.00 2.34
2336 2770 4.888326 TTGTTGATTTTATTGCAGGGCT 57.112 36.364 0.00 0.00 0.00 5.19
2418 2852 2.930682 CTCTGCACATGTGATCTGACAG 59.069 50.000 29.80 22.72 0.00 3.51
2421 2855 3.479489 TGCACATGTGATCTGACAGTTT 58.521 40.909 29.80 0.00 0.00 2.66
2471 2905 6.291377 TGCTGACTACTCTCTTGATTTTGTT 58.709 36.000 0.00 0.00 0.00 2.83
2487 2921 6.998074 TGATTTTGTTCTAGGTCATTGTGAGT 59.002 34.615 0.00 0.00 0.00 3.41
2535 2969 0.721718 CGATGAAGTTCAAGGACGGC 59.278 55.000 10.14 0.00 0.00 5.68
2848 3287 2.637872 TGGTTGAGGTCTAAAGTCCCAG 59.362 50.000 0.00 0.00 0.00 4.45
2888 3327 3.536158 AACGTCACATCATTTTGGTCG 57.464 42.857 0.00 0.00 0.00 4.79
2945 3384 2.785562 TGCAACGCTTGGTTACCTATT 58.214 42.857 2.07 0.00 36.49 1.73
3017 3456 8.967552 TTTCGTTTAAACTAAGTTTTGCTGAA 57.032 26.923 16.01 5.08 37.01 3.02
3030 3473 5.869350 GTTTTGCTGAAACGAGCTATGTAT 58.131 37.500 0.00 0.00 38.38 2.29
3061 3504 5.473066 ACCTTTGTTTGGATTGATTCTGG 57.527 39.130 0.00 0.00 0.00 3.86
3071 3514 2.408271 TTGATTCTGGCCAGCTAGTG 57.592 50.000 28.91 4.17 0.00 2.74
3107 3550 4.379339 TTGTGCCACCTTTTTACTGTTC 57.621 40.909 0.00 0.00 0.00 3.18
3109 3552 2.614983 GTGCCACCTTTTTACTGTTCGA 59.385 45.455 0.00 0.00 0.00 3.71
3110 3553 3.065648 GTGCCACCTTTTTACTGTTCGAA 59.934 43.478 0.00 0.00 0.00 3.71
3125 3570 4.548494 TGTTCGAAGTGTTCTTATGCGTA 58.452 39.130 0.00 0.00 33.64 4.42
3126 3571 5.165676 TGTTCGAAGTGTTCTTATGCGTAT 58.834 37.500 0.00 0.00 33.64 3.06
3130 3575 7.997107 TCGAAGTGTTCTTATGCGTATATTT 57.003 32.000 0.00 0.00 33.64 1.40
3173 3634 7.447853 ACTTAAATGTTTACCCATCCACGTAAA 59.552 33.333 0.00 0.00 33.24 2.01
3175 3636 6.651975 AATGTTTACCCATCCACGTAAAAA 57.348 33.333 0.00 0.00 36.49 1.94
3176 3637 5.435820 TGTTTACCCATCCACGTAAAAAC 57.564 39.130 0.00 0.00 36.49 2.43
3183 3644 5.054477 CCCATCCACGTAAAAACTATCGAT 58.946 41.667 2.16 2.16 0.00 3.59
3189 3650 6.869913 TCCACGTAAAAACTATCGATCAAACT 59.130 34.615 0.00 0.00 0.00 2.66
3225 3686 9.959749 AATTTATTCTGTGAAAAACGCTTTCTA 57.040 25.926 10.81 1.87 0.00 2.10
3230 3691 7.500807 TCTGTGAAAAACGCTTTCTAAAAAC 57.499 32.000 10.81 2.94 0.00 2.43
3231 3692 7.085116 TCTGTGAAAAACGCTTTCTAAAAACA 58.915 30.769 10.81 6.41 0.00 2.83
3232 3693 7.757624 TCTGTGAAAAACGCTTTCTAAAAACAT 59.242 29.630 10.81 0.00 0.00 2.71
3233 3694 7.670916 TGTGAAAAACGCTTTCTAAAAACATG 58.329 30.769 10.81 0.00 0.00 3.21
3236 3697 8.926710 TGAAAAACGCTTTCTAAAAACATGAAA 58.073 25.926 0.00 0.00 0.00 2.69
3256 3751 9.631452 CATGAAAATTTTCTTCCTAGAAGAACC 57.369 33.333 26.73 1.21 41.25 3.62
3264 3759 9.771140 TTTTCTTCCTAGAAGAACCTACTATCT 57.229 33.333 17.12 0.00 41.25 1.98
3273 3768 7.653647 AGAAGAACCTACTATCTAAGATTGCG 58.346 38.462 0.00 0.00 0.00 4.85
3274 3769 6.963083 AGAACCTACTATCTAAGATTGCGT 57.037 37.500 0.00 0.00 0.00 5.24
3275 3770 7.349412 AGAACCTACTATCTAAGATTGCGTT 57.651 36.000 0.00 0.00 0.00 4.84
3278 3773 9.525409 GAACCTACTATCTAAGATTGCGTTTTA 57.475 33.333 0.00 0.00 0.00 1.52
3279 3774 9.880157 AACCTACTATCTAAGATTGCGTTTTAA 57.120 29.630 0.00 0.00 0.00 1.52
3287 3782 9.774742 ATCTAAGATTGCGTTTTAATTCTTGTC 57.225 29.630 0.00 0.00 0.00 3.18
3288 3783 8.999431 TCTAAGATTGCGTTTTAATTCTTGTCT 58.001 29.630 0.00 0.00 0.00 3.41
3289 3784 9.612620 CTAAGATTGCGTTTTAATTCTTGTCTT 57.387 29.630 0.00 0.00 0.00 3.01
3291 3786 9.612620 AAGATTGCGTTTTAATTCTTGTCTTAG 57.387 29.630 0.00 0.00 0.00 2.18
3292 3787 8.999431 AGATTGCGTTTTAATTCTTGTCTTAGA 58.001 29.630 0.00 0.00 0.00 2.10
3293 3788 9.774742 GATTGCGTTTTAATTCTTGTCTTAGAT 57.225 29.630 0.00 0.00 0.00 1.98
3295 3790 9.959749 TTGCGTTTTAATTCTTGTCTTAGATTT 57.040 25.926 0.00 0.00 0.00 2.17
3296 3791 9.393249 TGCGTTTTAATTCTTGTCTTAGATTTG 57.607 29.630 0.00 0.00 0.00 2.32
3297 3792 9.394477 GCGTTTTAATTCTTGTCTTAGATTTGT 57.606 29.630 0.00 0.00 0.00 2.83
3307 3802 8.717821 TCTTGTCTTAGATTTGTCCAAAATACG 58.282 33.333 0.00 0.00 33.56 3.06
3308 3803 7.972832 TGTCTTAGATTTGTCCAAAATACGT 57.027 32.000 0.00 0.00 33.56 3.57
3309 3804 8.385898 TGTCTTAGATTTGTCCAAAATACGTT 57.614 30.769 0.00 0.00 33.56 3.99
3310 3805 8.842280 TGTCTTAGATTTGTCCAAAATACGTTT 58.158 29.630 0.00 0.00 33.56 3.60
3311 3806 9.113876 GTCTTAGATTTGTCCAAAATACGTTTG 57.886 33.333 0.00 0.00 45.36 2.93
3312 3807 8.842280 TCTTAGATTTGTCCAAAATACGTTTGT 58.158 29.630 0.00 0.00 44.46 2.83
3315 3810 8.964420 AGATTTGTCCAAAATACGTTTGTATG 57.036 30.769 0.00 0.00 44.46 2.39
3316 3811 8.788806 AGATTTGTCCAAAATACGTTTGTATGA 58.211 29.630 0.00 0.00 44.46 2.15
3317 3812 9.400638 GATTTGTCCAAAATACGTTTGTATGAA 57.599 29.630 0.00 0.00 44.46 2.57
3318 3813 9.751542 ATTTGTCCAAAATACGTTTGTATGAAA 57.248 25.926 0.00 0.00 44.46 2.69
3319 3814 9.751542 TTTGTCCAAAATACGTTTGTATGAAAT 57.248 25.926 0.00 0.00 44.46 2.17
3320 3815 9.751542 TTGTCCAAAATACGTTTGTATGAAATT 57.248 25.926 0.00 0.00 44.46 1.82
3321 3816 9.186323 TGTCCAAAATACGTTTGTATGAAATTG 57.814 29.630 0.00 0.00 44.46 2.32
3322 3817 9.187455 GTCCAAAATACGTTTGTATGAAATTGT 57.813 29.630 0.00 0.00 44.46 2.71
3323 3818 9.186323 TCCAAAATACGTTTGTATGAAATTGTG 57.814 29.630 0.00 0.00 44.46 3.33
3324 3819 8.973378 CCAAAATACGTTTGTATGAAATTGTGT 58.027 29.630 0.00 0.00 44.46 3.72
3515 4034 6.603940 TGCTAAAGAATAAGGTTTGCCATT 57.396 33.333 0.00 0.00 37.19 3.16
3516 4035 7.710676 TGCTAAAGAATAAGGTTTGCCATTA 57.289 32.000 0.00 0.00 37.19 1.90
3544 6012 9.788960 TCTCAGTTATGTGATAATATATCGCAC 57.211 33.333 13.96 4.50 40.74 5.34
3547 6015 9.794685 CAGTTATGTGATAATATATCGCACTCT 57.205 33.333 13.96 10.33 40.74 3.24
3563 6031 4.872691 CGCACTCTAAATTGGAGTCAGAAT 59.127 41.667 9.10 0.00 41.45 2.40
3564 6032 6.042777 CGCACTCTAAATTGGAGTCAGAATA 58.957 40.000 9.10 0.00 41.45 1.75
3570 6038 9.454859 CTCTAAATTGGAGTCAGAATAAGGTTT 57.545 33.333 0.00 0.00 0.00 3.27
3587 6055 5.104259 AGGTTTGACATATGAGGAAGACC 57.896 43.478 10.38 9.21 0.00 3.85
3602 6070 2.094762 AGACCCGTCAGAATTTTCGG 57.905 50.000 0.00 0.00 42.22 4.30
3621 6089 2.616842 CGGTAAAGTGAAGCAAACCACT 59.383 45.455 0.00 0.00 44.69 4.00
3689 6158 7.013846 ACGTTCAAAGGAAAAATGATACCTGAA 59.986 33.333 0.00 0.00 34.13 3.02
3692 6161 9.709495 TTCAAAGGAAAAATGATACCTGAATTG 57.291 29.630 0.00 0.00 32.73 2.32
3693 6162 8.313292 TCAAAGGAAAAATGATACCTGAATTGG 58.687 33.333 0.00 0.00 32.73 3.16
3712 6181 5.744666 TTGGAAACGGTTTTCTAAGTCAG 57.255 39.130 12.84 0.00 40.98 3.51
3719 6188 9.756461 GAAACGGTTTTCTAAGTCAGAATATTC 57.244 33.333 7.65 7.41 42.88 1.75
3772 6241 6.676632 TGAGGACAAGATTTATCTTAAGGGGA 59.323 38.462 1.85 0.00 44.84 4.81
3789 6258 0.822121 GGACAGGTTTGTGACACCCC 60.822 60.000 2.45 0.55 37.76 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.490890 GGCTTGAGCTTGTAGGCG 58.509 61.111 2.66 0.00 41.70 5.52
7 8 3.909086 GAGGTGGCGGCTTGAGCTT 62.909 63.158 11.43 0.00 41.70 3.74
32 33 1.053424 GTGGAAGACAGGGTGTACCA 58.947 55.000 3.11 0.00 43.89 3.25
42 43 1.299850 CTGCGACACGTGGAAGACA 60.300 57.895 21.57 9.42 0.00 3.41
121 122 0.677288 TTGATCAGGACCGTCGTGTT 59.323 50.000 18.24 11.74 34.22 3.32
134 135 3.009363 TCTTGAATCCAGCACCTTGATCA 59.991 43.478 0.00 0.00 0.00 2.92
136 137 3.726557 TCTTGAATCCAGCACCTTGAT 57.273 42.857 0.00 0.00 0.00 2.57
147 148 3.507233 TCTTGTTGCACCATCTTGAATCC 59.493 43.478 0.00 0.00 0.00 3.01
150 151 3.698539 TGTTCTTGTTGCACCATCTTGAA 59.301 39.130 0.00 0.00 0.00 2.69
188 414 1.745489 GATGGGCTGGACCGTCAAC 60.745 63.158 9.64 0.00 44.33 3.18
192 418 2.300967 ATGTGATGGGCTGGACCGT 61.301 57.895 0.00 0.00 40.62 4.83
196 422 0.405198 ACAACATGTGATGGGCTGGA 59.595 50.000 0.00 0.00 33.60 3.86
200 426 3.081061 TCAAGTACAACATGTGATGGGC 58.919 45.455 0.00 0.00 33.60 5.36
209 435 3.135994 GGGTTCGTGTCAAGTACAACAT 58.864 45.455 0.00 0.00 40.63 2.71
212 438 4.877378 ATAGGGTTCGTGTCAAGTACAA 57.123 40.909 0.00 0.00 40.63 2.41
214 440 4.179298 GGAATAGGGTTCGTGTCAAGTAC 58.821 47.826 0.00 0.00 0.00 2.73
229 510 4.592997 AGAACAGGAAAAGGGGAATAGG 57.407 45.455 0.00 0.00 0.00 2.57
230 511 4.636206 CGAAGAACAGGAAAAGGGGAATAG 59.364 45.833 0.00 0.00 0.00 1.73
238 519 4.211374 ACACGAATCGAAGAACAGGAAAAG 59.789 41.667 10.55 0.00 43.58 2.27
252 533 4.109766 TGCAAGTTAGGATACACGAATCG 58.890 43.478 0.00 0.00 41.41 3.34
277 558 4.663636 AAAAGGAATAACTCGAGTTGCG 57.336 40.909 35.24 3.90 38.90 4.85
298 579 7.860373 GCTTGTGTATGTACTGATGTTCAAAAA 59.140 33.333 0.00 0.00 0.00 1.94
299 580 7.359595 GCTTGTGTATGTACTGATGTTCAAAA 58.640 34.615 0.00 0.00 0.00 2.44
300 581 6.347321 CGCTTGTGTATGTACTGATGTTCAAA 60.347 38.462 0.00 0.00 0.00 2.69
301 582 5.120053 CGCTTGTGTATGTACTGATGTTCAA 59.880 40.000 0.00 0.00 0.00 2.69
302 583 4.625311 CGCTTGTGTATGTACTGATGTTCA 59.375 41.667 0.00 0.00 0.00 3.18
303 584 4.492570 GCGCTTGTGTATGTACTGATGTTC 60.493 45.833 0.00 0.00 0.00 3.18
304 585 3.370978 GCGCTTGTGTATGTACTGATGTT 59.629 43.478 0.00 0.00 0.00 2.71
305 586 2.930040 GCGCTTGTGTATGTACTGATGT 59.070 45.455 0.00 0.00 0.00 3.06
306 587 3.190079 AGCGCTTGTGTATGTACTGATG 58.810 45.455 2.64 0.00 0.00 3.07
307 588 3.119137 TGAGCGCTTGTGTATGTACTGAT 60.119 43.478 13.26 0.00 0.00 2.90
308 589 2.230266 TGAGCGCTTGTGTATGTACTGA 59.770 45.455 13.26 0.00 0.00 3.41
309 590 2.606108 TGAGCGCTTGTGTATGTACTG 58.394 47.619 13.26 0.00 0.00 2.74
310 591 3.526931 ATGAGCGCTTGTGTATGTACT 57.473 42.857 13.26 0.00 0.00 2.73
311 592 5.918576 TGTATATGAGCGCTTGTGTATGTAC 59.081 40.000 13.26 13.66 0.00 2.90
312 593 5.918576 GTGTATATGAGCGCTTGTGTATGTA 59.081 40.000 13.26 1.96 0.00 2.29
313 594 4.745125 GTGTATATGAGCGCTTGTGTATGT 59.255 41.667 13.26 2.92 0.00 2.29
314 595 4.744631 TGTGTATATGAGCGCTTGTGTATG 59.255 41.667 13.26 0.00 0.00 2.39
315 596 4.944048 TGTGTATATGAGCGCTTGTGTAT 58.056 39.130 13.26 10.35 0.00 2.29
316 597 4.379339 TGTGTATATGAGCGCTTGTGTA 57.621 40.909 13.26 3.18 0.00 2.90
317 598 3.245518 TGTGTATATGAGCGCTTGTGT 57.754 42.857 13.26 4.27 0.00 3.72
318 599 3.605461 GCATGTGTATATGAGCGCTTGTG 60.605 47.826 13.26 0.03 0.00 3.33
319 600 2.545526 GCATGTGTATATGAGCGCTTGT 59.454 45.455 13.26 5.98 0.00 3.16
320 601 2.545106 TGCATGTGTATATGAGCGCTTG 59.455 45.455 13.26 2.09 0.00 4.01
321 602 2.837498 TGCATGTGTATATGAGCGCTT 58.163 42.857 13.26 0.00 0.00 4.68
322 603 2.531522 TGCATGTGTATATGAGCGCT 57.468 45.000 11.27 11.27 0.00 5.92
323 604 3.679502 TGTATGCATGTGTATATGAGCGC 59.320 43.478 10.16 0.00 0.00 5.92
324 605 4.925646 AGTGTATGCATGTGTATATGAGCG 59.074 41.667 10.16 0.00 0.00 5.03
325 606 5.928264 TGAGTGTATGCATGTGTATATGAGC 59.072 40.000 10.16 0.00 0.00 4.26
326 607 7.277319 GGATGAGTGTATGCATGTGTATATGAG 59.723 40.741 10.16 0.00 0.00 2.90
327 608 7.099120 GGATGAGTGTATGCATGTGTATATGA 58.901 38.462 10.16 0.00 0.00 2.15
328 609 6.314648 GGGATGAGTGTATGCATGTGTATATG 59.685 42.308 10.16 0.00 0.00 1.78
329 610 6.214208 AGGGATGAGTGTATGCATGTGTATAT 59.786 38.462 10.16 0.00 0.00 0.86
330 611 5.543790 AGGGATGAGTGTATGCATGTGTATA 59.456 40.000 10.16 0.00 0.00 1.47
331 612 4.349048 AGGGATGAGTGTATGCATGTGTAT 59.651 41.667 10.16 0.00 0.00 2.29
332 613 3.711190 AGGGATGAGTGTATGCATGTGTA 59.289 43.478 10.16 0.00 0.00 2.90
333 614 2.507058 AGGGATGAGTGTATGCATGTGT 59.493 45.455 10.16 0.00 0.00 3.72
334 615 3.204306 AGGGATGAGTGTATGCATGTG 57.796 47.619 10.16 0.00 0.00 3.21
335 616 4.594491 TCATAGGGATGAGTGTATGCATGT 59.406 41.667 10.16 0.00 37.15 3.21
336 617 5.156608 TCATAGGGATGAGTGTATGCATG 57.843 43.478 10.16 0.00 37.15 4.06
337 618 5.555017 GTTCATAGGGATGAGTGTATGCAT 58.445 41.667 3.79 3.79 43.03 3.96
338 619 4.501400 CGTTCATAGGGATGAGTGTATGCA 60.501 45.833 0.00 0.00 43.03 3.96
339 620 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
340 621 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
341 622 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
342 623 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
343 624 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
344 625 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
345 626 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
346 627 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
347 628 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
348 629 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
349 630 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
350 631 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
351 632 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
352 633 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
353 634 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
354 635 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
355 636 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
356 637 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
357 638 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
358 639 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
361 642 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
362 643 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
363 644 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
364 645 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
365 646 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
366 647 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
367 648 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
368 649 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
369 650 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
370 651 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
371 652 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
372 653 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
373 654 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
374 655 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
375 656 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
376 657 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
377 658 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
378 659 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
379 660 3.142393 CGGAGGTGCTCATAGGGG 58.858 66.667 0.00 0.00 31.08 4.79
392 673 2.125512 CGGCTCAACCTTCCGGAG 60.126 66.667 3.34 0.00 39.52 4.63
395 676 2.587322 TATGCCGGCTCAACCTTCCG 62.587 60.000 29.70 0.00 42.58 4.30
396 677 0.179018 ATATGCCGGCTCAACCTTCC 60.179 55.000 29.70 0.00 35.61 3.46
397 678 1.230324 GATATGCCGGCTCAACCTTC 58.770 55.000 29.70 10.80 35.61 3.46
398 679 0.546122 TGATATGCCGGCTCAACCTT 59.454 50.000 29.70 5.10 35.61 3.50
399 680 0.767375 ATGATATGCCGGCTCAACCT 59.233 50.000 29.70 5.43 35.61 3.50
400 681 1.160137 GATGATATGCCGGCTCAACC 58.840 55.000 29.70 14.79 0.00 3.77
401 682 2.175878 AGATGATATGCCGGCTCAAC 57.824 50.000 29.70 20.80 0.00 3.18
402 683 2.104622 TCAAGATGATATGCCGGCTCAA 59.895 45.455 29.70 13.42 0.00 3.02
403 684 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
404 685 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
405 686 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
406 687 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
407 688 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
408 689 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
409 690 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
410 691 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
411 692 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
412 693 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
413 694 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
414 695 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
415 696 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
416 697 5.004821 CGGTGACTTCGTAAATCTCAAGATG 59.995 44.000 0.00 0.00 34.49 2.90
417 698 5.103000 CGGTGACTTCGTAAATCTCAAGAT 58.897 41.667 0.00 0.00 36.07 2.40
418 699 4.022589 ACGGTGACTTCGTAAATCTCAAGA 60.023 41.667 0.00 0.00 39.22 3.02
419 700 4.235360 ACGGTGACTTCGTAAATCTCAAG 58.765 43.478 0.00 0.00 39.22 3.02
420 701 4.247267 ACGGTGACTTCGTAAATCTCAA 57.753 40.909 0.00 0.00 39.22 3.02
421 702 3.928727 ACGGTGACTTCGTAAATCTCA 57.071 42.857 0.00 0.00 39.22 3.27
422 703 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
423 704 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
424 705 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
425 706 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
426 707 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
427 708 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
428 709 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
429 710 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
430 711 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
431 712 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
434 715 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
436 717 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
439 720 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
462 743 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
463 744 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
464 745 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
465 746 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
466 747 0.615331 TGCATTCAGTGGGAGGAGAC 59.385 55.000 0.00 0.00 0.00 3.36
467 748 0.615331 GTGCATTCAGTGGGAGGAGA 59.385 55.000 0.00 0.00 0.00 3.71
468 749 0.325933 TGTGCATTCAGTGGGAGGAG 59.674 55.000 0.00 0.00 0.00 3.69
469 750 0.994247 ATGTGCATTCAGTGGGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
470 751 1.386533 GATGTGCATTCAGTGGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
471 752 1.012086 CGATGTGCATTCAGTGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
472 753 1.026182 GCGATGTGCATTCAGTGGGA 61.026 55.000 0.00 0.00 45.45 4.37
473 754 1.430632 GCGATGTGCATTCAGTGGG 59.569 57.895 0.00 0.00 45.45 4.61
483 764 1.819632 AGGATTTCCGGCGATGTGC 60.820 57.895 9.30 0.00 42.08 4.57
484 765 0.461870 TCAGGATTTCCGGCGATGTG 60.462 55.000 9.30 0.00 42.08 3.21
485 766 0.251916 TTCAGGATTTCCGGCGATGT 59.748 50.000 9.30 0.00 42.08 3.06
486 767 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
487 768 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
488 769 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
489 770 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
490 771 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
491 772 5.827797 TCTGGATTTATTTCAGGATTTCCGG 59.172 40.000 0.00 0.00 42.08 5.14
492 773 6.942532 TCTGGATTTATTTCAGGATTTCCG 57.057 37.500 0.00 0.00 42.08 4.30
499 780 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
500 781 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
501 782 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
502 783 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
503 784 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
504 785 7.649306 GTGCTCGCATTTATTTCTGGATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
505 786 7.141363 GTGCTCGCATTTATTTCTGGATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
506 787 6.459573 GGTGCTCGCATTTATTTCTGGATTTA 60.460 38.462 0.00 0.00 0.00 1.40
507 788 5.343249 GTGCTCGCATTTATTTCTGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
508 789 4.202050 GGTGCTCGCATTTATTTCTGGATT 60.202 41.667 0.00 0.00 0.00 3.01
509 790 3.316308 GGTGCTCGCATTTATTTCTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
510 791 2.682856 GGTGCTCGCATTTATTTCTGGA 59.317 45.455 0.00 0.00 0.00 3.86
511 792 2.423185 TGGTGCTCGCATTTATTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
512 793 3.488047 CCTGGTGCTCGCATTTATTTCTG 60.488 47.826 0.00 0.00 0.00 3.02
513 794 2.684881 CCTGGTGCTCGCATTTATTTCT 59.315 45.455 0.00 0.00 0.00 2.52
514 795 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
515 796 2.722094 TCCTGGTGCTCGCATTTATTT 58.278 42.857 0.00 0.00 0.00 1.40
516 797 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
517 798 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
518 799 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
519 800 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
520 801 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
521 802 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
522 803 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
523 804 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
524 805 1.197721 GTGTTCAAATCCTGGTGCTCG 59.802 52.381 0.00 0.00 0.00 5.03
525 806 2.227388 CAGTGTTCAAATCCTGGTGCTC 59.773 50.000 0.00 0.00 0.00 4.26
526 807 2.233271 CAGTGTTCAAATCCTGGTGCT 58.767 47.619 0.00 0.00 0.00 4.40
527 808 1.270550 CCAGTGTTCAAATCCTGGTGC 59.729 52.381 0.00 0.00 39.70 5.01
531 812 2.749621 GCCTACCAGTGTTCAAATCCTG 59.250 50.000 0.00 0.00 0.00 3.86
532 813 2.644798 AGCCTACCAGTGTTCAAATCCT 59.355 45.455 0.00 0.00 0.00 3.24
533 814 2.749621 CAGCCTACCAGTGTTCAAATCC 59.250 50.000 0.00 0.00 0.00 3.01
534 815 2.749621 CCAGCCTACCAGTGTTCAAATC 59.250 50.000 0.00 0.00 0.00 2.17
535 816 2.375174 TCCAGCCTACCAGTGTTCAAAT 59.625 45.455 0.00 0.00 0.00 2.32
536 817 1.771854 TCCAGCCTACCAGTGTTCAAA 59.228 47.619 0.00 0.00 0.00 2.69
537 818 1.347707 CTCCAGCCTACCAGTGTTCAA 59.652 52.381 0.00 0.00 0.00 2.69
538 819 0.976641 CTCCAGCCTACCAGTGTTCA 59.023 55.000 0.00 0.00 0.00 3.18
539 820 1.267121 TCTCCAGCCTACCAGTGTTC 58.733 55.000 0.00 0.00 0.00 3.18
540 821 1.958288 ATCTCCAGCCTACCAGTGTT 58.042 50.000 0.00 0.00 0.00 3.32
541 822 2.389715 GTATCTCCAGCCTACCAGTGT 58.610 52.381 0.00 0.00 0.00 3.55
542 823 1.689273 GGTATCTCCAGCCTACCAGTG 59.311 57.143 0.00 0.00 35.90 3.66
543 824 1.291033 TGGTATCTCCAGCCTACCAGT 59.709 52.381 0.00 0.00 39.89 4.00
544 825 2.088104 TGGTATCTCCAGCCTACCAG 57.912 55.000 0.00 0.00 39.89 4.00
551 832 3.859808 GAGGGACTGTGGTATCTCCAGC 61.860 59.091 0.00 0.00 44.13 4.85
552 833 2.035632 GAGGGACTGTGGTATCTCCAG 58.964 57.143 0.00 0.00 44.13 3.86
553 834 1.646447 AGAGGGACTGTGGTATCTCCA 59.354 52.381 0.00 0.00 41.55 3.86
554 835 2.463047 AGAGGGACTGTGGTATCTCC 57.537 55.000 0.00 0.00 41.55 3.71
555 836 3.637694 GGTTAGAGGGACTGTGGTATCTC 59.362 52.174 0.00 0.00 41.55 2.75
556 837 3.012502 TGGTTAGAGGGACTGTGGTATCT 59.987 47.826 0.00 0.00 41.55 1.98
557 838 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
558 839 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
559 840 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
560 841 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
561 842 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
562 843 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
563 844 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
564 845 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
566 847 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
567 848 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
568 849 1.406887 CGTGGTTGGATGGTTAGAGGG 60.407 57.143 0.00 0.00 0.00 4.30
569 850 1.406887 CCGTGGTTGGATGGTTAGAGG 60.407 57.143 0.00 0.00 0.00 3.69
570 851 1.406887 CCCGTGGTTGGATGGTTAGAG 60.407 57.143 0.00 0.00 0.00 2.43
571 852 0.616371 CCCGTGGTTGGATGGTTAGA 59.384 55.000 0.00 0.00 0.00 2.10
572 853 0.326927 ACCCGTGGTTGGATGGTTAG 59.673 55.000 0.00 0.00 27.29 2.34
573 854 0.772384 AACCCGTGGTTGGATGGTTA 59.228 50.000 7.42 0.00 45.07 2.85
574 855 1.539665 AACCCGTGGTTGGATGGTT 59.460 52.632 7.42 0.00 45.07 3.67
575 856 3.257133 AACCCGTGGTTGGATGGT 58.743 55.556 7.42 0.00 45.07 3.55
585 866 2.330041 GTTGCGAACCAACCCGTG 59.670 61.111 0.00 0.00 46.44 4.94
597 878 2.854777 CTCAGGAATAACTCGAGTTGCG 59.145 50.000 35.24 18.60 38.90 4.85
598 879 3.860536 GTCTCAGGAATAACTCGAGTTGC 59.139 47.826 35.24 24.25 38.90 4.17
599 880 5.060662 TGTCTCAGGAATAACTCGAGTTG 57.939 43.478 35.24 21.18 38.90 3.16
600 881 5.723672 TTGTCTCAGGAATAACTCGAGTT 57.276 39.130 31.70 31.70 41.73 3.01
601 882 5.923733 ATTGTCTCAGGAATAACTCGAGT 57.076 39.130 13.58 13.58 0.00 4.18
602 883 6.039941 ACCTATTGTCTCAGGAATAACTCGAG 59.960 42.308 11.84 11.84 35.76 4.04
603 884 5.892119 ACCTATTGTCTCAGGAATAACTCGA 59.108 40.000 0.00 0.00 35.76 4.04
604 885 6.150396 ACCTATTGTCTCAGGAATAACTCG 57.850 41.667 0.00 0.00 35.76 4.18
605 886 6.039493 TCGACCTATTGTCTCAGGAATAACTC 59.961 42.308 0.00 0.00 42.13 3.01
606 887 5.892119 TCGACCTATTGTCTCAGGAATAACT 59.108 40.000 0.00 0.00 42.13 2.24
616 897 2.959707 AGGTGGATCGACCTATTGTCTC 59.040 50.000 26.31 0.00 45.09 3.36
626 907 1.079503 GAACAGCAAGGTGGATCGAC 58.920 55.000 0.00 0.00 0.00 4.20
809 1126 2.766400 GCGGAGAGACGAGGACTGG 61.766 68.421 0.00 0.00 35.47 4.00
810 1127 1.587043 TTGCGGAGAGACGAGGACTG 61.587 60.000 0.00 0.00 35.47 3.51
811 1128 0.681564 ATTGCGGAGAGACGAGGACT 60.682 55.000 0.00 0.00 35.47 3.85
812 1129 0.526524 CATTGCGGAGAGACGAGGAC 60.527 60.000 0.00 0.00 35.47 3.85
813 1130 1.809869 CATTGCGGAGAGACGAGGA 59.190 57.895 0.00 0.00 35.47 3.71
885 1202 2.019272 GGGAGAGGGGGAGGGTAGA 61.019 68.421 0.00 0.00 0.00 2.59
1053 1371 3.148084 CTGGGGACGGCGGAATAT 58.852 61.111 13.24 0.00 0.00 1.28
1486 1807 4.614555 CAACGCCTTGCATCTACAAATA 57.385 40.909 0.00 0.00 0.00 1.40
1516 1837 1.730121 GCATCACAACAGCAATGACCG 60.730 52.381 0.00 0.00 0.00 4.79
1522 1843 3.819902 TGATAAGTGCATCACAACAGCAA 59.180 39.130 0.00 0.00 40.35 3.91
1523 1844 3.410508 TGATAAGTGCATCACAACAGCA 58.589 40.909 0.00 0.00 36.74 4.41
1535 1856 9.390795 CATAGCATCTAAACAAATGATAAGTGC 57.609 33.333 0.00 0.00 28.62 4.40
1577 1898 9.283768 ACAACATACACTGAAACATCAAATAGA 57.716 29.630 0.00 0.00 0.00 1.98
1614 1935 4.749245 CTTCCTTACGAAGTGTGCAAAT 57.251 40.909 0.00 0.00 45.73 2.32
1658 2001 1.276421 TCAGAAAGCAGGGCAGAGTAC 59.724 52.381 0.00 0.00 0.00 2.73
1712 2055 4.597079 TGCTTCAAAGAACAGCTTTTACG 58.403 39.130 0.00 0.00 44.24 3.18
1736 2079 0.539986 CTAGGGTTTTCTGGCCGCTA 59.460 55.000 0.00 0.00 0.00 4.26
1747 2090 3.829601 CTGCGGATCTATCTCTAGGGTTT 59.170 47.826 0.00 0.00 0.00 3.27
1752 2095 4.522114 TCCATCTGCGGATCTATCTCTAG 58.478 47.826 4.63 0.00 0.00 2.43
1766 2109 0.952280 CACATCAGCCATCCATCTGC 59.048 55.000 0.00 0.00 0.00 4.26
1773 2116 0.100682 CAAGCAGCACATCAGCCATC 59.899 55.000 0.00 0.00 34.23 3.51
1783 2126 4.181309 AGAACTAGTAGACAAGCAGCAC 57.819 45.455 3.59 0.00 0.00 4.40
1874 2217 2.230992 TGCAACATAACCACTGCATTCC 59.769 45.455 0.00 0.00 39.77 3.01
1911 2260 7.093902 GCACCAGTTATATATCCTACTAGCACA 60.094 40.741 0.00 0.00 0.00 4.57
1929 2278 1.683385 GCTTCTCCTTTTGCACCAGTT 59.317 47.619 0.00 0.00 0.00 3.16
1951 2301 1.371183 CCGCTGGTGACAAAGGAGA 59.629 57.895 0.00 0.00 42.06 3.71
1970 2320 7.549134 TGGATCAGTATCAACAGTTGTCATTAC 59.451 37.037 13.14 10.50 33.41 1.89
1971 2321 7.549134 GTGGATCAGTATCAACAGTTGTCATTA 59.451 37.037 13.14 0.00 36.24 1.90
1972 2322 6.372659 GTGGATCAGTATCAACAGTTGTCATT 59.627 38.462 13.14 0.50 36.24 2.57
1973 2323 5.877012 GTGGATCAGTATCAACAGTTGTCAT 59.123 40.000 13.14 3.16 36.24 3.06
1974 2324 5.221621 TGTGGATCAGTATCAACAGTTGTCA 60.222 40.000 13.14 0.00 40.49 3.58
1975 2325 5.237815 TGTGGATCAGTATCAACAGTTGTC 58.762 41.667 13.14 1.58 40.49 3.18
1976 2326 5.227569 TGTGGATCAGTATCAACAGTTGT 57.772 39.130 13.14 3.72 40.49 3.32
1989 2339 2.228059 GGCCATTCATCTGTGGATCAG 58.772 52.381 0.00 0.00 44.85 2.90
1990 2340 1.565288 TGGCCATTCATCTGTGGATCA 59.435 47.619 0.00 0.00 37.72 2.92
2128 2562 7.830697 TGAACCATTCTCACAATCATCATAGTT 59.169 33.333 0.00 0.00 0.00 2.24
2170 2604 0.530744 CGTCTGGCCACTACTGCTAA 59.469 55.000 0.00 0.00 0.00 3.09
2254 2688 5.355910 AGAAAGCGTTAGGTTGAAACAAAGA 59.644 36.000 0.00 0.00 38.21 2.52
2271 2705 7.164826 GCAGAAATATAACATCAACAGAAAGCG 59.835 37.037 0.00 0.00 0.00 4.68
2336 2770 2.472695 AGCGAAGAACACCATAGCAA 57.527 45.000 0.00 0.00 0.00 3.91
2471 2905 2.256306 TGCCACTCACAATGACCTAGA 58.744 47.619 0.00 0.00 0.00 2.43
2535 2969 4.558178 GCTGACCAGATGAGATCATGTAG 58.442 47.826 0.00 0.00 36.57 2.74
2848 3287 2.680312 TCATGGTCTGCTTGCTCTAC 57.320 50.000 0.00 0.00 0.00 2.59
2888 3327 6.466885 TCACAGGGATAGAAAACTAGCTAC 57.533 41.667 0.00 0.00 0.00 3.58
3014 3453 3.871006 CAGGCAATACATAGCTCGTTTCA 59.129 43.478 0.00 0.00 0.00 2.69
3017 3456 3.819564 TCAGGCAATACATAGCTCGTT 57.180 42.857 0.00 0.00 0.00 3.85
3030 3473 2.834549 TCCAAACAAAGGTTTCAGGCAA 59.165 40.909 0.00 0.00 45.18 4.52
3061 3504 4.386413 AGCAACACACTAGCTGGC 57.614 55.556 0.00 0.00 37.20 4.85
3071 3514 1.544686 CACAAACGGAACAGCAACAC 58.455 50.000 0.00 0.00 0.00 3.32
3107 3550 7.837505 TGAAATATACGCATAAGAACACTTCG 58.162 34.615 0.00 0.00 34.02 3.79
3125 3570 5.557138 AGTGGGGACATGGGATATGAAATAT 59.443 40.000 0.00 0.00 46.14 1.28
3126 3571 4.919510 AGTGGGGACATGGGATATGAAATA 59.080 41.667 0.00 0.00 46.14 1.40
3130 3575 2.512910 AGTGGGGACATGGGATATGA 57.487 50.000 0.00 0.00 46.14 2.15
3210 3671 8.467402 TTCATGTTTTTAGAAAGCGTTTTTCA 57.533 26.923 14.19 0.00 0.00 2.69
3230 3691 9.631452 GGTTCTTCTAGGAAGAAAATTTTCATG 57.369 33.333 28.00 13.38 41.19 3.07
3231 3692 9.593565 AGGTTCTTCTAGGAAGAAAATTTTCAT 57.406 29.630 28.00 19.21 41.19 2.57
3232 3693 8.996651 AGGTTCTTCTAGGAAGAAAATTTTCA 57.003 30.769 28.00 10.03 41.19 2.69
3247 3742 8.784994 CGCAATCTTAGATAGTAGGTTCTTCTA 58.215 37.037 0.00 0.00 0.00 2.10
3265 3760 9.612620 CTAAGACAAGAATTAAAACGCAATCTT 57.387 29.630 0.00 0.00 0.00 2.40
3267 3762 9.774742 ATCTAAGACAAGAATTAAAACGCAATC 57.225 29.630 0.00 0.00 0.00 2.67
3271 3766 9.394477 ACAAATCTAAGACAAGAATTAAAACGC 57.606 29.630 0.00 0.00 0.00 4.84
3281 3776 8.717821 CGTATTTTGGACAAATCTAAGACAAGA 58.282 33.333 0.00 0.00 0.00 3.02
3282 3777 8.504005 ACGTATTTTGGACAAATCTAAGACAAG 58.496 33.333 0.00 0.00 0.00 3.16
3283 3778 8.385898 ACGTATTTTGGACAAATCTAAGACAA 57.614 30.769 0.00 0.00 0.00 3.18
3285 3780 9.113876 CAAACGTATTTTGGACAAATCTAAGAC 57.886 33.333 0.00 0.00 40.98 3.01
3428 3923 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
3492 3999 6.603940 AATGGCAAACCTTATTCTTTAGCA 57.396 33.333 0.00 0.00 36.63 3.49
3493 4000 9.249457 GATTAATGGCAAACCTTATTCTTTAGC 57.751 33.333 0.00 0.00 36.63 3.09
3496 4003 9.034800 TGAGATTAATGGCAAACCTTATTCTTT 57.965 29.630 0.00 0.00 36.63 2.52
3497 4004 8.593945 TGAGATTAATGGCAAACCTTATTCTT 57.406 30.769 0.00 0.00 36.63 2.52
3544 6012 9.454859 AAACCTTATTCTGACTCCAATTTAGAG 57.545 33.333 1.45 1.45 37.39 2.43
3547 6015 9.010029 GTCAAACCTTATTCTGACTCCAATTTA 57.990 33.333 0.00 0.00 36.18 1.40
3563 6031 6.352737 GGGTCTTCCTCATATGTCAAACCTTA 60.353 42.308 1.90 0.00 0.00 2.69
3564 6032 5.501156 GGTCTTCCTCATATGTCAAACCTT 58.499 41.667 1.90 0.00 0.00 3.50
3570 6038 2.693591 GACGGGTCTTCCTCATATGTCA 59.306 50.000 1.90 0.00 0.00 3.58
3602 6070 4.893424 TGAGTGGTTTGCTTCACTTTAC 57.107 40.909 0.00 0.00 43.41 2.01
3621 6089 5.182487 TGCGATCTTATTACCTTGCTTTGA 58.818 37.500 0.00 0.00 0.00 2.69
3655 6123 2.421751 TCCTTTGAACGTTGTTCCCA 57.578 45.000 5.00 0.00 0.00 4.37
3665 6133 9.710900 AATTCAGGTATCATTTTTCCTTTGAAC 57.289 29.630 0.00 0.00 0.00 3.18
3689 6158 6.059484 TCTGACTTAGAAAACCGTTTCCAAT 58.941 36.000 0.00 0.00 43.65 3.16
3692 6161 5.996669 TTCTGACTTAGAAAACCGTTTCC 57.003 39.130 0.00 0.00 43.65 3.13
3726 6195 7.890127 TCCTCAAGATTTGGTTACTCAATGAAT 59.110 33.333 0.00 0.00 0.00 2.57
3768 6237 0.822121 GGTGTCACAAACCTGTCCCC 60.822 60.000 5.12 0.00 34.66 4.81
3772 6241 0.333312 TTGGGGTGTCACAAACCTGT 59.667 50.000 5.12 0.00 37.85 4.00
3797 6266 9.942850 ATCAAAGAAAAGAAAAGAAAAGAACCA 57.057 25.926 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.