AutoCloner

Multiple sequence alignment - TraesCS7B01G198100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G198100	chr7B	100.000	5044	0	0	1	5044	348981667	348976624	0.000000e+00	9315.0
1	TraesCS7B01G198100	chr7B	89.831	59	4	2	4821	4877	504631425	504631483	1.950000e-09	75.0
2	TraesCS7B01G198100	chr7A	97.267	4171	85	8	896	5044	385427108	385431271	0.000000e+00	7044.0
3	TraesCS7B01G198100	chr7A	90.461	629	50	8	270	892	385424708	385425332	0.000000e+00	821.0
4	TraesCS7B01G198100	chr7D	98.434	3066	44	2	896	3961	319900618	319903679	0.000000e+00	5393.0
5	TraesCS7B01G198100	chr7D	96.605	648	18	1	4397	5044	319904788	319905431	0.000000e+00	1072.0
6	TraesCS7B01G198100	chr7D	94.928	552	25	3	1	550	319794331	319794881	0.000000e+00	861.0
7	TraesCS7B01G198100	chr7D	98.086	418	7	1	3958	4375	319904023	319904439	0.000000e+00	726.0
8	TraesCS7B01G198100	chr7D	89.136	359	34	5	544	898	319807807	319808164	4.630000e-120	442.0
9	TraesCS7B01G198100	chr6D	85.307	667	79	11	1	662	81676431	81675779	0.000000e+00	671.0
10	TraesCS7B01G198100	chr6D	85.155	613	80	7	1	610	35216419	35217023	7.170000e-173	617.0
11	TraesCS7B01G198100	chr2A	83.483	666	88	9	1	662	709864164	709863517	7.230000e-168	601.0
12	TraesCS7B01G198100	chr3B	82.960	669	95	13	1	663	451856122	451855467	2.020000e-163	586.0
13	TraesCS7B01G198100	chr3B	78.662	314	42	17	4735	5038	636112483	636112185	8.620000e-43	185.0
14	TraesCS7B01G198100	chr3B	91.525	59	3	2	4821	4877	169904984	169904926	4.190000e-11	80.5
15	TraesCS7B01G198100	chr6B	83.680	625	79	17	1	618	72400818	72401426	7.330000e-158	568.0
16	TraesCS7B01G198100	chr6B	91.525	59	3	2	4821	4877	98051819	98051877	4.190000e-11	80.5
17	TraesCS7B01G198100	chr4D	86.735	490	52	11	3	488	491970006	491969526	2.670000e-147	532.0
18	TraesCS7B01G198100	chr1B	81.532	666	104	9	1	662	658752655	658753305	9.620000e-147	531.0
19	TraesCS7B01G198100	chr1B	96.154	52	1	1	4829	4879	169837452	169837503	3.240000e-12	84.2
20	TraesCS7B01G198100	chr4B	86.410	493	55	7	4	494	631167500	631167018	3.460000e-146	529.0
21	TraesCS7B01G198100	chr4B	89.831	59	4	2	4821	4877	491944150	491944092	1.950000e-09	75.0
22	TraesCS7B01G198100	chr5B	90.000	60	3	3	4821	4877	557185118	557185059	1.950000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G198100	chr7B	348976624	348981667	5043	True	9315.0	9315	100.000000	1	5044	1	chr7B.!!$R1	5043
1	TraesCS7B01G198100	chr7A	385424708	385431271	6563	False	3932.5	7044	93.864000	270	5044	2	chr7A.!!$F1	4774
2	TraesCS7B01G198100	chr7D	319900618	319905431	4813	False	2397.0	5393	97.708333	896	5044	3	chr7D.!!$F3	4148
3	TraesCS7B01G198100	chr7D	319794331	319794881	550	False	861.0	861	94.928000	1	550	1	chr7D.!!$F1	549
4	TraesCS7B01G198100	chr6D	81675779	81676431	652	True	671.0	671	85.307000	1	662	1	chr6D.!!$R1	661
5	TraesCS7B01G198100	chr6D	35216419	35217023	604	False	617.0	617	85.155000	1	610	1	chr6D.!!$F1	609
6	TraesCS7B01G198100	chr2A	709863517	709864164	647	True	601.0	601	83.483000	1	662	1	chr2A.!!$R1	661
7	TraesCS7B01G198100	chr3B	451855467	451856122	655	True	586.0	586	82.960000	1	663	1	chr3B.!!$R2	662
8	TraesCS7B01G198100	chr6B	72400818	72401426	608	False	568.0	568	83.680000	1	618	1	chr6B.!!$F1	617
9	TraesCS7B01G198100	chr1B	658752655	658753305	650	False	531.0	531	81.532000	1	662	1	chr1B.!!$F2	661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
148	150	0.319083	TGCCATTGTTCGACGTACCT	59.681	50.000	1.99	0.00	0.00	3.08	F
1441	3233	0.179132	TGTGTTCACGTACACTGCGT	60.179	50.000	19.42	0.00	46.67	5.24	F
1680	3472	0.466922	GCTACTGCAATGCTGGGGAT	60.467	55.000	16.21	0.00	39.41	3.85	F
1882	3674	0.899720	AATTCAGGGGCAGTGCAATG	59.100	50.000	18.61	10.38	0.00	2.82	F
3153	4945	2.866762	GCAAGATTATCGTCCTGGTGAC	59.133	50.000	0.00	0.00	40.81	3.67	F
3808	5600	1.371183	GCCCCTTGCCAACCTTTTC	59.629	57.895	0.00	0.00	0.00	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1882	3674	0.174162	GCACATTCCAACTGCCCATC	59.826	55.000	0.00	0.00	3.51	R
3302	5094	1.202687	CGGGCAGAAGATATGCTGGAA	60.203	52.381	0.00	43.35	3.53	R
3588	5380	4.944962	TTCCATTAGAGAACACAATGCG	57.055	40.909	0.00	0.00	4.73	R
3808	5600	1.331756	GTCAGCCAATACTGGAATGCG	59.668	52.381	0.00	46.92	4.73	R
3978	6117	1.005215	CTCCAAGGGATGAAACAGCCT	59.995	52.381	6.03	40.16	4.58	R
4767	7235	1.702491	GCCTTCCGGTTACGCATGAC	61.702	60.000	0.00	39.22	3.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	5.858581	GTCAACATTTGTGAAGACCATTAGC	59.141	40.000	0.00	0.00	0.00	3.09
148	150	0.319083	TGCCATTGTTCGACGTACCT	59.681	50.000	1.99	0.00	0.00	3.08
188	192	6.360618	AGAAATCCCTAGAAACATCATGACC	58.639	40.000	0.00	0.00	0.00	4.02
389	395	0.950555	TCGTTGAGCATCTGTGGCAC	60.951	55.000	11.55	11.55	34.92	5.01
390	396	0.952497	CGTTGAGCATCTGTGGCACT	60.952	55.000	19.83	0.00	34.92	4.40
618	627	9.827411	GTTGAAAATCTAGAATTTACGAAGCTT	57.173	29.630	5.76	0.00	0.00	3.74
647	657	1.432251	CGGTACCGCGAAGTCTCAT	59.568	57.895	23.44	0.00	0.00	2.90
683	693	7.872061	ATCCTATATTGTGGGATGAGTTACA	57.128	36.000	0.00	0.00	45.62	2.41
684	694	7.872061	TCCTATATTGTGGGATGAGTTACAT	57.128	36.000	0.00	0.00	42.47	2.29
690	701	6.806668	TTGTGGGATGAGTTACATGATCTA	57.193	37.500	0.00	0.00	39.56	1.98
696	707	7.933577	TGGGATGAGTTACATGATCTATTTCAC	59.066	37.037	0.00	0.00	39.56	3.18
697	708	7.116948	GGGATGAGTTACATGATCTATTTCACG	59.883	40.741	0.00	0.00	39.56	4.35
698	709	7.653713	GGATGAGTTACATGATCTATTTCACGT	59.346	37.037	0.00	0.00	39.56	4.49
704	715	4.338400	ACATGATCTATTTCACGTCGGAGA	59.662	41.667	0.00	0.00	0.00	3.71
717	728	0.738975	TCGGAGACCTTGCAGTATCG	59.261	55.000	0.00	0.00	0.00	2.92
724	735	6.278363	GGAGACCTTGCAGTATCGTAATTTA	58.722	40.000	0.00	0.00	0.00	1.40
726	737	7.441458	GGAGACCTTGCAGTATCGTAATTTATT	59.559	37.037	0.00	0.00	0.00	1.40
754	765	6.262273	ACAAGTGTCCTGTAAATGAATTTCGT	59.738	34.615	0.00	0.00	0.00	3.85
759	770	7.267600	GTGTCCTGTAAATGAATTTCGTAAACG	59.732	37.037	0.00	0.00	41.45	3.60
773	784	5.481200	TCGTAAACGAATTTTGTTGGACA	57.519	34.783	2.10	0.00	46.30	4.02
774	785	5.503498	TCGTAAACGAATTTTGTTGGACAG	58.497	37.500	2.10	3.03	46.30	3.51
780	792	6.194796	ACGAATTTTGTTGGACAGGATATG	57.805	37.500	0.00	0.00	0.00	1.78
805	817	5.423015	TGGATCTGCTAGTCTAAAAAGCTG	58.577	41.667	0.00	0.00	37.16	4.24
843	857	7.148804	GGAGTTTGTTTGACACTTCTTGTTTTC	60.149	37.037	0.00	0.00	39.17	2.29
845	859	4.728534	TGTTTGACACTTCTTGTTTTCGG	58.271	39.130	0.00	0.00	39.17	4.30
872	886	8.531622	AGACTAAATCTGATAATCAATCGCAG	57.468	34.615	0.00	0.00	37.42	5.18
873	887	7.117523	AGACTAAATCTGATAATCAATCGCAGC	59.882	37.037	0.00	0.00	37.42	5.25
893	907	4.597032	CCCAAACAAGGCACCTCA	57.403	55.556	0.00	0.00	0.00	3.86
894	908	2.344535	CCCAAACAAGGCACCTCAG	58.655	57.895	0.00	0.00	0.00	3.35
1441	3233	0.179132	TGTGTTCACGTACACTGCGT	60.179	50.000	19.42	0.00	46.67	5.24
1594	3386	1.623811	GAACTGGTGAGGCAGAGGTTA	59.376	52.381	0.00	0.00	0.00	2.85
1600	3392	2.501723	GGTGAGGCAGAGGTTATTCTCA	59.498	50.000	0.00	0.00	36.30	3.27
1680	3472	0.466922	GCTACTGCAATGCTGGGGAT	60.467	55.000	16.21	0.00	39.41	3.85
1804	3596	1.679311	GTGGACAGAGCCATGGTGA	59.321	57.895	14.67	0.00	40.68	4.02
1882	3674	0.899720	AATTCAGGGGCAGTGCAATG	59.100	50.000	18.61	10.38	0.00	2.82
2066	3858	6.629128	ACAGAGTGAATGAGATTGTCTACAG	58.371	40.000	0.00	0.00	0.00	2.74
2263	4055	4.351407	TGGTGAAAGGAGTACAACCCAATA	59.649	41.667	0.00	0.00	0.00	1.90
2361	4153	4.147321	AGATGATTGCGGCAGGAATTAAT	58.853	39.130	4.92	2.85	38.56	1.40
2917	4709	6.872020	AGCTTTGACATTTCTTGATTCAATGG	59.128	34.615	0.00	0.00	33.00	3.16
3016	4808	4.341235	AGACTGCTAAAAAGGTTTTGGGTC	59.659	41.667	0.00	0.00	0.00	4.46
3144	4936	3.643320	TGATGGAGGAGCAAGATTATCGT	59.357	43.478	0.00	0.00	0.00	3.73
3153	4945	2.866762	GCAAGATTATCGTCCTGGTGAC	59.133	50.000	0.00	0.00	40.81	3.67
3290	5082	4.023450	CGAGGCATATGCATTTTCATGTCT	60.023	41.667	28.07	12.91	44.36	3.41
3291	5083	5.449107	AGGCATATGCATTTTCATGTCTC	57.551	39.130	28.07	6.82	44.36	3.36
3292	5084	4.891168	AGGCATATGCATTTTCATGTCTCA	59.109	37.500	28.07	0.00	44.36	3.27
3302	5094	6.405508	GCATTTTCATGTCTCATCAGTTCCAT	60.406	38.462	0.00	0.00	32.28	3.41
3529	5321	6.429385	AGTCTTTCATCAGTGACCAAGAATTC	59.571	38.462	10.59	0.00	34.60	2.17
3588	5380	8.593492	AAAAACAGAATGGAAAGCTAAATCAC	57.407	30.769	0.00	0.00	43.62	3.06
3808	5600	1.371183	GCCCCTTGCCAACCTTTTC	59.629	57.895	0.00	0.00	0.00	2.29
3961	6100	4.970662	TTTGCATCTTTCCTGTGATAGC	57.029	40.909	0.00	0.00	0.00	2.97
4032	6171	5.765182	CCTTTCAGAATACCACACAAACTCT	59.235	40.000	0.00	0.00	0.00	3.24
4139	6278	3.175240	CGGAGAGCAACGTGAGCG	61.175	66.667	7.50	0.00	44.93	5.03
4326	6465	9.221775	CCTTCGTTGTTGAGTTATATTAAATGC	57.778	33.333	0.00	0.00	0.00	3.56
4327	6466	9.767684	CTTCGTTGTTGAGTTATATTAAATGCA	57.232	29.630	0.00	0.00	0.00	3.96
4388	6529	2.618241	TGTGCACTGAAGGATGTGTTTC	59.382	45.455	19.41	0.00	36.63	2.78
4390	6531	3.058639	GTGCACTGAAGGATGTGTTTCTC	60.059	47.826	10.32	0.00	36.63	2.87
4468	6936	5.099575	ACACCGAAGTTGAATTGTTTGTTC	58.900	37.500	0.00	0.00	0.00	3.18
4683	7151	8.100135	AGGATAGTCAAATTCTGGAAGATTCT	57.900	34.615	0.00	0.00	46.36	2.40
4696	7164	5.371526	TGGAAGATTCTATGGATGCAACTC	58.628	41.667	0.00	0.00	0.00	3.01
4767	7235	1.068741	GGCAGTAACCTCGATAGGGTG	59.931	57.143	0.00	0.00	45.00	4.61
4771	7239	3.637229	CAGTAACCTCGATAGGGTGTCAT	59.363	47.826	0.00	0.00	45.00	3.06
4855	7323	2.237893	CACGGTGGAGGTAAAACCCTAT	59.762	50.000	0.00	0.00	39.75	2.57
4959	7427	9.862371	CACATAGGTGTATCCAGATTAGATAAC	57.138	37.037	0.00	0.00	40.24	1.89

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	0.313987	GCTTCTTGGTTTTGGGGTCG	59.686	55.000	0.00	0.00	0.00	4.79
148	150	4.202264	GGATTTCTTATCCCAGAAGCGAGA	60.202	45.833	0.00	0.00	34.22	4.04
207	211	4.380761	CCTCTCATCCTCGATGATCATGTC	60.381	50.000	14.30	0.00	46.16	3.06
382	388	1.951209	TCTCCCATAGAAGTGCCACA	58.049	50.000	0.00	0.00	0.00	4.17
640	650	1.460504	TCTGTTCCGCGTATGAGACT	58.539	50.000	4.92	0.00	0.00	3.24
678	688	5.975344	TCCGACGTGAAATAGATCATGTAAC	59.025	40.000	0.00	0.00	46.73	2.50
682	692	4.677378	GTCTCCGACGTGAAATAGATCATG	59.323	45.833	0.00	0.00	41.21	3.07
683	693	4.261656	GGTCTCCGACGTGAAATAGATCAT	60.262	45.833	0.00	0.00	32.65	2.45
684	694	3.066342	GGTCTCCGACGTGAAATAGATCA	59.934	47.826	0.00	0.00	32.65	2.92
690	701	1.939838	GCAAGGTCTCCGACGTGAAAT	60.940	52.381	0.00	0.00	32.65	2.17
696	707	0.456221	ATACTGCAAGGTCTCCGACG	59.544	55.000	0.00	0.00	39.30	5.12
697	708	1.534175	CGATACTGCAAGGTCTCCGAC	60.534	57.143	0.00	0.00	39.30	4.79
698	709	0.738975	CGATACTGCAAGGTCTCCGA	59.261	55.000	0.00	0.00	39.30	4.55
726	737	9.959749	GAAATTCATTTACAGGACACTTGTAAA	57.040	29.630	16.85	16.85	40.70	2.01
734	745	7.171167	TCGTTTACGAAATTCATTTACAGGACA	59.829	33.333	1.95	0.00	46.30	4.02
736	747	7.655236	TCGTTTACGAAATTCATTTACAGGA	57.345	32.000	1.95	0.00	46.30	3.86
754	765	6.642707	ATCCTGTCCAACAAAATTCGTTTA	57.357	33.333	0.00	0.00	0.00	2.01
759	770	6.813152	CCAACATATCCTGTCCAACAAAATTC	59.187	38.462	0.00	0.00	36.98	2.17
768	779	3.181451	GCAGATCCAACATATCCTGTCCA	60.181	47.826	0.00	0.00	36.98	4.02
771	782	4.904251	ACTAGCAGATCCAACATATCCTGT	59.096	41.667	0.00	0.00	40.84	4.00
772	783	5.245751	AGACTAGCAGATCCAACATATCCTG	59.754	44.000	0.00	0.00	0.00	3.86
773	784	5.401750	AGACTAGCAGATCCAACATATCCT	58.598	41.667	0.00	0.00	0.00	3.24
774	785	5.736951	AGACTAGCAGATCCAACATATCC	57.263	43.478	0.00	0.00	0.00	2.59
780	792	5.877564	AGCTTTTTAGACTAGCAGATCCAAC	59.122	40.000	0.00	0.00	37.37	3.77
811	823	4.862371	AGTGTCAAACAAACTCCCCTAAA	58.138	39.130	0.00	0.00	0.00	1.85
830	844	6.598753	TTAGTCTTCCGAAAACAAGAAGTG	57.401	37.500	0.00	0.00	38.50	3.16
843	857	8.642885	CGATTGATTATCAGATTTAGTCTTCCG	58.357	37.037	0.00	0.00	34.00	4.30
845	859	8.982685	TGCGATTGATTATCAGATTTAGTCTTC	58.017	33.333	0.00	0.00	34.00	2.87
892	906	0.183731	GGGATCCTGGGCCTTTACTG	59.816	60.000	12.58	0.00	0.00	2.74
893	907	0.253630	TGGGATCCTGGGCCTTTACT	60.254	55.000	12.58	0.00	0.00	2.24
894	908	0.853530	ATGGGATCCTGGGCCTTTAC	59.146	55.000	12.58	0.00	0.00	2.01
955	2741	4.849310	TATGAAGGTGGGCGGCGC	62.849	66.667	26.17	26.17	0.00	6.53
1173	2965	1.137872	GATGCGAAGGACTCCATGTCT	59.862	52.381	0.00	0.00	44.74	3.41
1217	3009	2.250031	TGATAAGGGTGGTGTACGTGT	58.750	47.619	0.00	0.00	0.00	4.49
1441	3233	1.604308	CACACAGCCCATGGAGCAA	60.604	57.895	22.33	0.00	0.00	3.91
1594	3386	0.749454	GCCATTGCCTCCGTGAGAAT	60.749	55.000	2.84	0.00	0.00	2.40
1600	3392	2.270205	CTCAGCCATTGCCTCCGT	59.730	61.111	0.00	0.00	38.69	4.69
1680	3472	1.511305	CTTAACCGCGAGCTCCAGA	59.489	57.895	8.23	0.00	0.00	3.86
1804	3596	0.327924	TCAACCATCCGGCTGAACAT	59.672	50.000	6.92	0.00	34.37	2.71
1882	3674	0.174162	GCACATTCCAACTGCCCATC	59.826	55.000	0.00	0.00	0.00	3.51
2066	3858	2.089980	ACAGTCCATCAATCAAGCTGC	58.910	47.619	0.00	0.00	0.00	5.25
2263	4055	7.778083	TCAATTAGAATGGTATACGTGACAGT	58.222	34.615	0.00	0.00	0.00	3.55
2361	4153	4.061357	TGTGTACGTGAAAACATCAGGA	57.939	40.909	0.00	0.00	44.81	3.86
2376	4168	5.796350	AGGAGCGAACAAATATTGTGTAC	57.204	39.130	0.00	0.00	44.59	2.90
2565	4357	2.097825	GACTCCTCATTTGGCTTGCAT	58.902	47.619	0.00	0.00	0.00	3.96
3016	4808	7.630242	AGTTGTATTCCTCCAATAACATGTG	57.370	36.000	0.00	0.00	0.00	3.21
3099	4891	4.202295	ACTGAGAGCAGAATCAAACACTCA	60.202	41.667	0.00	0.00	45.17	3.41
3144	4936	2.022764	CATACAATGCGTCACCAGGA	57.977	50.000	0.00	0.00	0.00	3.86
3290	5082	3.657398	ATGCTGGAATGGAACTGATGA	57.343	42.857	0.00	0.00	0.00	2.92
3291	5083	5.314529	AGATATGCTGGAATGGAACTGATG	58.685	41.667	0.00	0.00	0.00	3.07
3292	5084	5.579753	AGATATGCTGGAATGGAACTGAT	57.420	39.130	0.00	0.00	0.00	2.90
3302	5094	1.202687	CGGGCAGAAGATATGCTGGAA	60.203	52.381	0.00	0.00	43.35	3.53
3548	5340	6.959639	TCTGTTTTTACATCAAGCTTTCCT	57.040	33.333	0.00	0.00	0.00	3.36
3588	5380	4.944962	TTCCATTAGAGAACACAATGCG	57.055	40.909	0.00	0.00	0.00	4.73
3692	5484	7.543947	TGTATCACAGAGTGCTTAATCATTG	57.456	36.000	0.00	0.00	32.98	2.82
3743	5535	6.763135	GTCTGCCATAAATCTGTGAATGACTA	59.237	38.462	0.00	0.00	0.00	2.59
3808	5600	1.331756	GTCAGCCAATACTGGAATGCG	59.668	52.381	0.00	0.00	46.92	4.73
3978	6117	1.005215	CTCCAAGGGATGAAACAGCCT	59.995	52.381	6.03	0.00	40.16	4.58
4032	6171	6.295518	CCATTGGCTGAGAGCTATTCTATGTA	60.296	42.308	0.00	0.00	41.99	2.29
4129	6268	2.513065	GAATGCACCCGCTCACGTTG	62.513	60.000	0.00	0.00	39.64	4.10
4139	6278	4.365723	CATCTGCAAAATAGAATGCACCC	58.634	43.478	0.00	0.00	46.87	4.61
4388	6529	6.886459	TCCCTGATCCTGACAAATAAAAAGAG	59.114	38.462	0.00	0.00	0.00	2.85
4390	6531	7.651027	ATCCCTGATCCTGACAAATAAAAAG	57.349	36.000	0.00	0.00	0.00	2.27
4468	6936	4.275689	TCACCAAGTTACAGCAATCAACTG	59.724	41.667	0.00	0.00	41.08	3.16
4767	7235	1.702491	GCCTTCCGGTTACGCATGAC	61.702	60.000	0.00	0.00	39.22	3.06
4771	7239	2.677765	TTTGGCCTTCCGGTTACGCA	62.678	55.000	3.32	0.00	39.22	5.24
4855	7323	7.174413	TCACCATCAATTCAATCAAGTAGGAA	58.826	34.615	0.00	0.00	0.00	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.