Multiple sequence alignment - TraesCS7B01G197000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G197000 chr7B 100.000 5560 0 0 1 5560 339618706 339613147 0.000000e+00 10268.0
1 TraesCS7B01G197000 chr7B 82.258 124 17 5 110 231 82695392 82695272 9.850000e-18 102.0
2 TraesCS7B01G197000 chr7B 79.310 87 17 1 129 215 162149037 162148952 6.020000e-05 60.2
3 TraesCS7B01G197000 chrUn 96.324 4108 88 17 825 4912 116434696 116430632 0.000000e+00 6691.0
4 TraesCS7B01G197000 chrUn 84.053 1367 149 36 3419 4748 109117458 109118792 0.000000e+00 1253.0
5 TraesCS7B01G197000 chrUn 83.516 1092 98 43 1726 2772 109115516 109116570 0.000000e+00 944.0
6 TraesCS7B01G197000 chrUn 89.495 495 40 7 2927 3419 109116567 109117051 2.850000e-172 616.0
7 TraesCS7B01G197000 chrUn 86.885 549 58 9 3520 4066 109122638 109123174 2.220000e-168 603.0
8 TraesCS7B01G197000 chrUn 81.358 751 60 43 1726 2431 342729192 342728477 6.340000e-149 538.0
9 TraesCS7B01G197000 chrUn 81.358 751 60 43 1726 2431 349354779 349355494 6.340000e-149 538.0
10 TraesCS7B01G197000 chrUn 95.890 292 11 1 5187 5478 116292548 116292258 6.520000e-129 472.0
11 TraesCS7B01G197000 chrUn 95.041 242 12 0 4930 5171 116429653 116429412 1.130000e-101 381.0
12 TraesCS7B01G197000 chrUn 88.693 283 30 1 1 281 116437268 116436986 1.480000e-90 344.0
13 TraesCS7B01G197000 chrUn 96.703 91 3 0 739 829 116436539 116436449 9.650000e-33 152.0
14 TraesCS7B01G197000 chr7D 96.544 4051 82 15 739 4754 296511869 296507842 0.000000e+00 6652.0
15 TraesCS7B01G197000 chr7D 96.097 538 20 1 4941 5478 296505466 296504930 0.000000e+00 876.0
16 TraesCS7B01G197000 chr7D 94.236 347 19 1 3412 3758 535320100 535319755 3.810000e-146 529.0
17 TraesCS7B01G197000 chr7D 83.436 489 45 14 1 458 296512346 296511863 6.660000e-114 422.0
18 TraesCS7B01G197000 chr7D 92.481 133 5 5 4745 4874 296507686 296507556 9.510000e-43 185.0
19 TraesCS7B01G197000 chr7D 97.590 83 2 0 5478 5560 233289593 233289511 5.810000e-30 143.0
20 TraesCS7B01G197000 chr5A 86.692 1871 157 38 2930 4747 703667817 703665986 0.000000e+00 1991.0
21 TraesCS7B01G197000 chr5A 93.948 347 21 0 3412 3758 629266265 629266611 4.930000e-145 525.0
22 TraesCS7B01G197000 chr5A 93.252 326 20 1 2374 2697 703668186 703667861 3.900000e-131 479.0
23 TraesCS7B01G197000 chr5A 81.365 542 50 26 1873 2369 703668894 703668359 1.450000e-105 394.0
24 TraesCS7B01G197000 chr5A 93.258 89 5 1 5473 5560 537955608 537955520 4.520000e-26 130.0
25 TraesCS7B01G197000 chr2A 95.101 347 17 0 3412 3758 655316663 655316317 1.050000e-151 547.0
26 TraesCS7B01G197000 chr6D 94.813 347 18 0 3412 3758 264000418 264000072 4.900000e-150 542.0
27 TraesCS7B01G197000 chr6D 90.419 167 15 1 2777 2942 8789962 8790128 9.380000e-53 219.0
28 TraesCS7B01G197000 chr4B 81.358 751 60 43 1726 2431 664107584 664108299 6.340000e-149 538.0
29 TraesCS7B01G197000 chr4B 81.358 751 60 43 1726 2431 664131934 664132649 6.340000e-149 538.0
30 TraesCS7B01G197000 chr4B 91.515 165 13 1 2777 2940 28724143 28724307 5.600000e-55 226.0
31 TraesCS7B01G197000 chr4B 97.590 83 2 0 5478 5560 575776239 575776321 5.810000e-30 143.0
32 TraesCS7B01G197000 chr6A 93.948 347 20 1 3412 3758 59350723 59351068 1.770000e-144 523.0
33 TraesCS7B01G197000 chr2B 93.372 347 23 0 3412 3758 330973742 330974088 1.070000e-141 514.0
34 TraesCS7B01G197000 chr2B 86.222 225 17 5 496 707 699290660 699290883 1.200000e-56 231.0
35 TraesCS7B01G197000 chr2B 90.419 167 15 1 2775 2940 76912136 76912302 9.380000e-53 219.0
36 TraesCS7B01G197000 chr2B 79.832 119 22 2 106 223 728630491 728630608 9.920000e-13 86.1
37 TraesCS7B01G197000 chr4D 88.432 389 27 3 4913 5283 54812755 54812367 2.360000e-123 453.0
38 TraesCS7B01G197000 chr4D 90.090 111 9 2 4819 4929 54812878 54812770 5.810000e-30 143.0
39 TraesCS7B01G197000 chr5B 85.778 225 19 1 496 707 314297958 314298182 5.600000e-55 226.0
40 TraesCS7B01G197000 chr5B 87.179 78 8 2 147 223 683499927 683500003 2.760000e-13 87.9
41 TraesCS7B01G197000 chr5B 86.957 69 7 2 157 224 378804384 378804317 5.970000e-10 76.8
42 TraesCS7B01G197000 chr3D 91.975 162 12 1 2777 2937 149764623 149764784 5.600000e-55 226.0
43 TraesCS7B01G197000 chr3D 91.667 84 7 0 5477 5560 64199163 64199246 3.520000e-22 117.0
44 TraesCS7B01G197000 chr5D 90.909 165 14 1 2777 2940 330893583 330893419 2.610000e-53 220.0
45 TraesCS7B01G197000 chr5D 86.905 84 11 0 5477 5560 372110676 372110593 1.650000e-15 95.3
46 TraesCS7B01G197000 chr4A 90.419 167 14 2 2777 2941 97530155 97529989 9.380000e-53 219.0
47 TraesCS7B01G197000 chr2D 88.636 176 18 2 2774 2947 63708573 63708398 4.360000e-51 213.0
48 TraesCS7B01G197000 chr6B 97.590 83 2 0 5478 5560 86095760 86095678 5.810000e-30 143.0
49 TraesCS7B01G197000 chr6B 97.590 83 2 0 5478 5560 715584166 715584084 5.810000e-30 143.0
50 TraesCS7B01G197000 chr3A 93.976 83 5 0 5478 5560 560502415 560502497 5.850000e-25 126.0
51 TraesCS7B01G197000 chr3B 94.737 76 4 0 5485 5560 807715550 807715475 9.780000e-23 119.0
52 TraesCS7B01G197000 chr1B 86.250 80 10 1 138 217 427524828 427524906 9.920000e-13 86.1
53 TraesCS7B01G197000 chr1A 82.653 98 15 2 122 218 505755563 505755467 9.920000e-13 86.1
54 TraesCS7B01G197000 chr1D 86.567 67 7 2 157 222 45132648 45132713 7.730000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G197000 chr7B 339613147 339618706 5559 True 10268.000000 10268 100.00000 1 5560 1 chr7B.!!$R3 5559
1 TraesCS7B01G197000 chrUn 116429412 116437268 7856 True 1892.000000 6691 94.19025 1 5171 4 chrUn.!!$R3 5170
2 TraesCS7B01G197000 chrUn 109115516 109123174 7658 False 854.000000 1253 85.98725 1726 4748 4 chrUn.!!$F2 3022
3 TraesCS7B01G197000 chrUn 342728477 342729192 715 True 538.000000 538 81.35800 1726 2431 1 chrUn.!!$R2 705
4 TraesCS7B01G197000 chrUn 349354779 349355494 715 False 538.000000 538 81.35800 1726 2431 1 chrUn.!!$F1 705
5 TraesCS7B01G197000 chr7D 296504930 296512346 7416 True 2033.750000 6652 92.13950 1 5478 4 chr7D.!!$R3 5477
6 TraesCS7B01G197000 chr5A 703665986 703668894 2908 True 954.666667 1991 87.10300 1873 4747 3 chr5A.!!$R2 2874
7 TraesCS7B01G197000 chr4B 664107584 664108299 715 False 538.000000 538 81.35800 1726 2431 1 chr4B.!!$F3 705
8 TraesCS7B01G197000 chr4B 664131934 664132649 715 False 538.000000 538 81.35800 1726 2431 1 chr4B.!!$F4 705
9 TraesCS7B01G197000 chr4D 54812367 54812878 511 True 298.000000 453 89.26100 4819 5283 2 chr4D.!!$R1 464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 1006 0.163788 CGGACTGCAACGCTGTTAAG 59.836 55.000 0.0 0.0 40.59 1.85 F
717 1011 0.948678 TGCAACGCTGTTAAGAACCC 59.051 50.000 0.0 0.0 0.00 4.11 F
719 1013 1.334689 GCAACGCTGTTAAGAACCCAC 60.335 52.381 0.0 0.0 0.00 4.61 F
835 2886 1.471119 TCCATCCACTCAGTACGGTC 58.529 55.000 0.0 0.0 0.00 4.79 F
1214 3277 1.634757 CGCGAGCTGCAACAACCATA 61.635 55.000 0.0 0.0 46.97 2.74 F
1419 3492 2.124507 TAGTGTCTGGCTGGGTTGGC 62.125 60.000 0.0 0.0 0.00 4.52 F
2997 5304 1.915141 CAAAATGTGCCCTGTCCTCT 58.085 50.000 0.0 0.0 0.00 3.69 F
4084 6817 2.359981 ATGGCATAGCAGCAGACATT 57.640 45.000 0.0 0.0 35.83 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 3650 0.110056 CAACATCAGGCGCAGTGTTC 60.110 55.000 10.83 0.0 32.87 3.18 R
2090 4214 0.322975 TCAGCAGAGAGGAAAGTGCC 59.677 55.000 0.00 0.0 36.54 5.01 R
2239 4373 2.012051 GCTATTGGTTGGTCCTGTCCG 61.012 57.143 0.00 0.0 37.07 4.79 R
2535 4839 2.034878 TCTATGCCGATGCTGACTTCT 58.965 47.619 0.00 0.0 38.71 2.85 R
2997 5304 0.105964 CCCCTCCGTCGAATATGCAA 59.894 55.000 0.00 0.0 0.00 4.08 R
3009 5318 0.473886 ATCCCATAGTTCCCCCTCCG 60.474 60.000 0.00 0.0 0.00 4.63 R
4384 7137 0.748005 CCCCTGTAAGATGGGCAACG 60.748 60.000 0.00 0.0 42.03 4.10 R
5477 13672 0.179054 GGAGCACCCGATACTTTCCC 60.179 60.000 0.00 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.217200 ACATCTGCACTATCCACGTAATTAAT 58.783 34.615 0.00 0.00 0.00 1.40
74 77 6.545298 TCCTAATTAACATGCATGCACATACA 59.455 34.615 25.37 7.91 0.00 2.29
113 116 4.272504 ACAGAAACGAGAGAAATTGCGAAA 59.727 37.500 0.00 0.00 0.00 3.46
114 117 4.608882 CAGAAACGAGAGAAATTGCGAAAC 59.391 41.667 0.00 0.00 0.00 2.78
133 136 2.642139 CAGCATGTGGTTGAATGGTC 57.358 50.000 0.00 0.00 32.40 4.02
174 177 2.347490 CCACCAGGGTCAAGTCCG 59.653 66.667 0.00 0.00 0.00 4.79
241 244 0.813184 TCACACGATTCCCGACTACC 59.187 55.000 0.00 0.00 41.76 3.18
243 246 0.815734 ACACGATTCCCGACTACCAG 59.184 55.000 0.00 0.00 41.76 4.00
249 252 3.801620 CCCGACTACCAGGGTGTT 58.198 61.111 0.06 0.00 42.67 3.32
255 258 1.142262 GACTACCAGGGTGTTTGTGGT 59.858 52.381 0.06 0.00 46.54 4.16
268 271 3.701542 TGTTTGTGGTGCCTTTGTCAATA 59.298 39.130 0.00 0.00 0.00 1.90
270 273 5.163364 TGTTTGTGGTGCCTTTGTCAATATT 60.163 36.000 0.00 0.00 0.00 1.28
282 314 7.864379 GCCTTTGTCAATATTAAGATGATGTGG 59.136 37.037 0.00 0.00 0.00 4.17
283 315 8.906867 CCTTTGTCAATATTAAGATGATGTGGT 58.093 33.333 0.00 0.00 0.00 4.16
285 317 9.460019 TTTGTCAATATTAAGATGATGTGGTGA 57.540 29.630 0.00 0.00 0.00 4.02
286 318 8.437360 TGTCAATATTAAGATGATGTGGTGAC 57.563 34.615 3.11 3.11 0.00 3.67
304 336 2.568956 TGACCCAGTCTTTCAGAGATGG 59.431 50.000 0.00 0.00 36.61 3.51
319 351 4.764823 CAGAGATGGTCATAGAGGTAGGAC 59.235 50.000 0.00 0.00 38.91 3.85
346 378 1.888512 GCGCATATTCATGGGGTTGAT 59.111 47.619 0.30 0.00 43.49 2.57
347 379 2.352030 GCGCATATTCATGGGGTTGATG 60.352 50.000 0.30 0.00 43.49 3.07
348 380 2.886523 CGCATATTCATGGGGTTGATGT 59.113 45.455 0.00 0.00 40.49 3.06
350 382 3.553508 GCATATTCATGGGGTTGATGTGC 60.554 47.826 0.00 0.00 32.36 4.57
357 389 1.555533 TGGGGTTGATGTGCGTATGTA 59.444 47.619 0.00 0.00 0.00 2.29
358 390 2.171659 TGGGGTTGATGTGCGTATGTAT 59.828 45.455 0.00 0.00 0.00 2.29
360 392 3.462982 GGGTTGATGTGCGTATGTATGA 58.537 45.455 0.00 0.00 0.00 2.15
363 395 2.393764 TGATGTGCGTATGTATGAGCG 58.606 47.619 0.00 0.00 0.00 5.03
369 401 2.159296 TGCGTATGTATGAGCGTCTGTT 60.159 45.455 0.00 0.00 0.00 3.16
370 402 2.468040 GCGTATGTATGAGCGTCTGTTC 59.532 50.000 0.00 0.00 0.00 3.18
372 404 3.969352 CGTATGTATGAGCGTCTGTTCTC 59.031 47.826 0.00 0.00 0.00 2.87
384 416 3.179795 CGTCTGTTCTCGTACTGTGTTTG 59.820 47.826 0.00 0.00 0.00 2.93
385 417 4.110482 GTCTGTTCTCGTACTGTGTTTGT 58.890 43.478 0.00 0.00 0.00 2.83
386 418 4.026804 GTCTGTTCTCGTACTGTGTTTGTG 60.027 45.833 0.00 0.00 0.00 3.33
387 419 3.852286 TGTTCTCGTACTGTGTTTGTGT 58.148 40.909 0.00 0.00 0.00 3.72
388 420 4.247258 TGTTCTCGTACTGTGTTTGTGTT 58.753 39.130 0.00 0.00 0.00 3.32
389 421 4.691685 TGTTCTCGTACTGTGTTTGTGTTT 59.308 37.500 0.00 0.00 0.00 2.83
390 422 5.179742 TGTTCTCGTACTGTGTTTGTGTTTT 59.820 36.000 0.00 0.00 0.00 2.43
445 739 7.968405 AGAAATAACGAAATACACAAAGCATCC 59.032 33.333 0.00 0.00 0.00 3.51
458 752 5.010012 CACAAAGCATCCTTAACCTGAGTTT 59.990 40.000 0.00 0.00 37.42 2.66
459 753 6.206634 CACAAAGCATCCTTAACCTGAGTTTA 59.793 38.462 0.00 0.00 37.42 2.01
460 754 6.948309 ACAAAGCATCCTTAACCTGAGTTTAT 59.052 34.615 0.00 0.00 37.42 1.40
461 755 7.121315 ACAAAGCATCCTTAACCTGAGTTTATC 59.879 37.037 0.00 0.00 37.42 1.75
462 756 6.313519 AGCATCCTTAACCTGAGTTTATCA 57.686 37.500 0.00 0.00 37.42 2.15
463 757 6.721318 AGCATCCTTAACCTGAGTTTATCAA 58.279 36.000 0.00 0.00 37.52 2.57
464 758 7.349598 AGCATCCTTAACCTGAGTTTATCAAT 58.650 34.615 0.00 0.00 37.52 2.57
465 759 7.284034 AGCATCCTTAACCTGAGTTTATCAATG 59.716 37.037 0.00 0.00 37.52 2.82
466 760 7.283127 GCATCCTTAACCTGAGTTTATCAATGA 59.717 37.037 0.00 0.00 37.52 2.57
467 761 8.834465 CATCCTTAACCTGAGTTTATCAATGAG 58.166 37.037 0.00 0.00 37.52 2.90
468 762 6.823689 TCCTTAACCTGAGTTTATCAATGAGC 59.176 38.462 0.00 0.00 37.52 4.26
469 763 6.599244 CCTTAACCTGAGTTTATCAATGAGCA 59.401 38.462 0.00 0.00 37.52 4.26
470 764 7.284034 CCTTAACCTGAGTTTATCAATGAGCAT 59.716 37.037 0.00 0.00 37.52 3.79
471 765 8.579850 TTAACCTGAGTTTATCAATGAGCATT 57.420 30.769 0.00 0.00 37.52 3.56
472 766 6.690194 ACCTGAGTTTATCAATGAGCATTC 57.310 37.500 0.00 0.00 37.52 2.67
473 767 6.182627 ACCTGAGTTTATCAATGAGCATTCA 58.817 36.000 0.00 0.00 37.52 2.57
474 768 6.660521 ACCTGAGTTTATCAATGAGCATTCAA 59.339 34.615 0.00 0.00 37.52 2.69
475 769 6.971184 CCTGAGTTTATCAATGAGCATTCAAC 59.029 38.462 0.00 0.00 37.52 3.18
476 770 6.855836 TGAGTTTATCAATGAGCATTCAACC 58.144 36.000 0.00 0.00 34.02 3.77
477 771 6.127647 TGAGTTTATCAATGAGCATTCAACCC 60.128 38.462 0.00 0.00 34.02 4.11
478 772 5.954150 AGTTTATCAATGAGCATTCAACCCT 59.046 36.000 0.00 0.00 36.78 4.34
479 773 5.840243 TTATCAATGAGCATTCAACCCTG 57.160 39.130 0.00 0.00 36.78 4.45
480 774 3.159213 TCAATGAGCATTCAACCCTGT 57.841 42.857 0.00 0.00 36.78 4.00
481 775 2.821378 TCAATGAGCATTCAACCCTGTG 59.179 45.455 0.00 0.00 36.78 3.66
482 776 2.821378 CAATGAGCATTCAACCCTGTGA 59.179 45.455 0.00 0.00 36.78 3.58
483 777 2.655090 TGAGCATTCAACCCTGTGAA 57.345 45.000 0.00 0.00 41.59 3.18
484 778 2.229792 TGAGCATTCAACCCTGTGAAC 58.770 47.619 0.00 0.00 40.22 3.18
485 779 2.158623 TGAGCATTCAACCCTGTGAACT 60.159 45.455 0.00 0.00 40.22 3.01
486 780 2.887152 GAGCATTCAACCCTGTGAACTT 59.113 45.455 0.00 0.00 40.22 2.66
487 781 3.299503 AGCATTCAACCCTGTGAACTTT 58.700 40.909 0.00 0.00 40.22 2.66
488 782 3.319122 AGCATTCAACCCTGTGAACTTTC 59.681 43.478 0.00 0.00 40.22 2.62
489 783 3.068024 GCATTCAACCCTGTGAACTTTCA 59.932 43.478 0.00 0.00 40.22 2.69
490 784 4.441356 GCATTCAACCCTGTGAACTTTCAA 60.441 41.667 0.00 0.00 40.22 2.69
491 785 5.739935 GCATTCAACCCTGTGAACTTTCAAT 60.740 40.000 0.00 0.00 40.22 2.57
492 786 6.516527 GCATTCAACCCTGTGAACTTTCAATA 60.517 38.462 0.00 0.00 40.22 1.90
493 787 6.633500 TTCAACCCTGTGAACTTTCAATAG 57.367 37.500 0.00 0.00 39.21 1.73
494 788 5.070001 TCAACCCTGTGAACTTTCAATAGG 58.930 41.667 13.14 13.14 40.62 2.57
497 791 3.690460 CCTGTGAACTTTCAATAGGGCT 58.310 45.455 12.59 0.00 38.84 5.19
498 792 4.082125 CCTGTGAACTTTCAATAGGGCTT 58.918 43.478 12.59 0.00 38.84 4.35
499 793 4.524328 CCTGTGAACTTTCAATAGGGCTTT 59.476 41.667 12.59 0.00 38.84 3.51
500 794 5.452078 TGTGAACTTTCAATAGGGCTTTG 57.548 39.130 0.00 0.00 39.21 2.77
501 795 5.136828 TGTGAACTTTCAATAGGGCTTTGA 58.863 37.500 0.00 0.00 39.21 2.69
502 796 5.009610 TGTGAACTTTCAATAGGGCTTTGAC 59.990 40.000 0.00 0.00 39.21 3.18
503 797 4.215399 TGAACTTTCAATAGGGCTTTGACG 59.785 41.667 0.00 0.00 33.03 4.35
504 798 3.081804 ACTTTCAATAGGGCTTTGACGG 58.918 45.455 0.00 0.00 33.03 4.79
505 799 3.244770 ACTTTCAATAGGGCTTTGACGGA 60.245 43.478 0.00 0.00 33.03 4.69
506 800 2.396590 TCAATAGGGCTTTGACGGAC 57.603 50.000 0.00 0.00 0.00 4.79
507 801 1.006832 CAATAGGGCTTTGACGGACG 58.993 55.000 0.00 0.00 0.00 4.79
508 802 0.899720 AATAGGGCTTTGACGGACGA 59.100 50.000 0.00 0.00 0.00 4.20
509 803 1.120530 ATAGGGCTTTGACGGACGAT 58.879 50.000 0.00 0.00 0.00 3.73
510 804 0.899720 TAGGGCTTTGACGGACGATT 59.100 50.000 0.00 0.00 0.00 3.34
511 805 0.391263 AGGGCTTTGACGGACGATTC 60.391 55.000 0.00 0.00 0.00 2.52
512 806 1.693083 GGGCTTTGACGGACGATTCG 61.693 60.000 4.14 4.14 0.00 3.34
513 807 1.693083 GGCTTTGACGGACGATTCGG 61.693 60.000 11.29 0.00 0.00 4.30
514 808 1.012486 GCTTTGACGGACGATTCGGT 61.012 55.000 11.29 0.00 37.97 4.69
515 809 1.425412 CTTTGACGGACGATTCGGTT 58.575 50.000 11.29 0.00 35.53 4.44
516 810 2.598589 CTTTGACGGACGATTCGGTTA 58.401 47.619 11.29 0.00 35.53 2.85
517 811 2.721274 TTGACGGACGATTCGGTTAA 57.279 45.000 11.29 0.00 35.53 2.01
518 812 2.945447 TGACGGACGATTCGGTTAAT 57.055 45.000 11.29 0.00 35.53 1.40
519 813 2.801063 TGACGGACGATTCGGTTAATC 58.199 47.619 11.29 0.00 40.63 1.75
520 814 2.122564 GACGGACGATTCGGTTAATCC 58.877 52.381 11.29 6.79 40.91 3.01
533 827 4.931661 GGTTAATCCGTCAGTCTATGGA 57.068 45.455 0.00 0.00 38.90 3.41
534 828 4.618965 GGTTAATCCGTCAGTCTATGGAC 58.381 47.826 0.00 0.00 37.37 4.02
535 829 4.098960 GGTTAATCCGTCAGTCTATGGACA 59.901 45.833 12.16 0.00 44.36 4.02
536 830 5.221461 GGTTAATCCGTCAGTCTATGGACAT 60.221 44.000 12.16 0.00 44.36 3.06
537 831 4.592485 AATCCGTCAGTCTATGGACATC 57.408 45.455 12.16 0.72 44.36 3.06
538 832 3.298686 TCCGTCAGTCTATGGACATCT 57.701 47.619 12.16 0.00 44.36 2.90
539 833 2.952310 TCCGTCAGTCTATGGACATCTG 59.048 50.000 12.16 1.38 44.36 2.90
540 834 2.952310 CCGTCAGTCTATGGACATCTGA 59.048 50.000 12.16 3.87 44.36 3.27
541 835 3.571828 CCGTCAGTCTATGGACATCTGAT 59.428 47.826 12.16 0.00 44.36 2.90
542 836 4.544651 CGTCAGTCTATGGACATCTGATG 58.455 47.826 15.83 15.83 44.36 3.07
543 837 4.276926 CGTCAGTCTATGGACATCTGATGA 59.723 45.833 23.59 2.42 44.36 2.92
544 838 5.048154 CGTCAGTCTATGGACATCTGATGAT 60.048 44.000 23.59 9.69 44.36 2.45
558 852 6.439599 CATCTGATGATGGAAATCAAGAAGC 58.560 40.000 12.27 0.00 44.63 3.86
559 853 4.885907 TCTGATGATGGAAATCAAGAAGCC 59.114 41.667 0.00 0.00 33.76 4.35
560 854 3.956199 TGATGATGGAAATCAAGAAGCCC 59.044 43.478 0.00 0.00 33.83 5.19
561 855 2.738743 TGATGGAAATCAAGAAGCCCC 58.261 47.619 0.00 0.00 0.00 5.80
562 856 2.312741 TGATGGAAATCAAGAAGCCCCT 59.687 45.455 0.00 0.00 0.00 4.79
563 857 2.220653 TGGAAATCAAGAAGCCCCTG 57.779 50.000 0.00 0.00 0.00 4.45
564 858 0.820226 GGAAATCAAGAAGCCCCTGC 59.180 55.000 0.00 0.00 37.95 4.85
565 859 1.549203 GAAATCAAGAAGCCCCTGCA 58.451 50.000 0.00 0.00 41.13 4.41
566 860 1.475682 GAAATCAAGAAGCCCCTGCAG 59.524 52.381 6.78 6.78 41.13 4.41
567 861 0.969409 AATCAAGAAGCCCCTGCAGC 60.969 55.000 8.66 0.00 41.13 5.25
568 862 1.860944 ATCAAGAAGCCCCTGCAGCT 61.861 55.000 8.66 0.00 44.19 4.24
573 867 4.093291 AGCCCCTGCAGCTTCGAG 62.093 66.667 8.66 0.00 37.24 4.04
575 869 4.479993 CCCCTGCAGCTTCGAGGG 62.480 72.222 8.66 8.76 45.57 4.30
576 870 3.710722 CCCTGCAGCTTCGAGGGT 61.711 66.667 8.66 0.00 41.58 4.34
577 871 2.348998 CCTGCAGCTTCGAGGGTT 59.651 61.111 8.66 0.00 0.00 4.11
578 872 1.302832 CCTGCAGCTTCGAGGGTTT 60.303 57.895 8.66 0.00 0.00 3.27
579 873 1.580845 CCTGCAGCTTCGAGGGTTTG 61.581 60.000 8.66 0.00 0.00 2.93
580 874 0.886490 CTGCAGCTTCGAGGGTTTGT 60.886 55.000 0.00 0.00 0.00 2.83
581 875 0.465460 TGCAGCTTCGAGGGTTTGTT 60.465 50.000 0.00 0.00 0.00 2.83
582 876 0.238553 GCAGCTTCGAGGGTTTGTTC 59.761 55.000 0.00 0.00 0.00 3.18
583 877 0.875059 CAGCTTCGAGGGTTTGTTCC 59.125 55.000 0.00 0.00 0.00 3.62
584 878 0.602905 AGCTTCGAGGGTTTGTTCCG 60.603 55.000 0.00 0.00 0.00 4.30
585 879 1.866925 CTTCGAGGGTTTGTTCCGC 59.133 57.895 0.00 0.00 0.00 5.54
586 880 0.602905 CTTCGAGGGTTTGTTCCGCT 60.603 55.000 0.00 0.00 0.00 5.52
587 881 0.179040 TTCGAGGGTTTGTTCCGCTT 60.179 50.000 0.00 0.00 0.00 4.68
588 882 0.179040 TCGAGGGTTTGTTCCGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
589 883 0.666374 CGAGGGTTTGTTCCGCTTTT 59.334 50.000 0.00 0.00 0.00 2.27
590 884 1.874872 CGAGGGTTTGTTCCGCTTTTA 59.125 47.619 0.00 0.00 0.00 1.52
591 885 2.291190 CGAGGGTTTGTTCCGCTTTTAA 59.709 45.455 0.00 0.00 0.00 1.52
592 886 3.057806 CGAGGGTTTGTTCCGCTTTTAAT 60.058 43.478 0.00 0.00 0.00 1.40
593 887 4.557895 CGAGGGTTTGTTCCGCTTTTAATT 60.558 41.667 0.00 0.00 0.00 1.40
594 888 4.627058 AGGGTTTGTTCCGCTTTTAATTG 58.373 39.130 0.00 0.00 0.00 2.32
595 889 4.342665 AGGGTTTGTTCCGCTTTTAATTGA 59.657 37.500 0.00 0.00 0.00 2.57
596 890 5.011635 AGGGTTTGTTCCGCTTTTAATTGAT 59.988 36.000 0.00 0.00 0.00 2.57
597 891 5.347635 GGGTTTGTTCCGCTTTTAATTGATC 59.652 40.000 0.00 0.00 0.00 2.92
598 892 5.923684 GGTTTGTTCCGCTTTTAATTGATCA 59.076 36.000 0.00 0.00 0.00 2.92
599 893 6.589907 GGTTTGTTCCGCTTTTAATTGATCAT 59.410 34.615 0.00 0.00 0.00 2.45
600 894 7.757624 GGTTTGTTCCGCTTTTAATTGATCATA 59.242 33.333 0.00 0.00 0.00 2.15
601 895 9.134734 GTTTGTTCCGCTTTTAATTGATCATAA 57.865 29.630 0.00 0.00 0.00 1.90
602 896 9.868277 TTTGTTCCGCTTTTAATTGATCATAAT 57.132 25.926 0.00 0.00 0.00 1.28
603 897 9.868277 TTGTTCCGCTTTTAATTGATCATAATT 57.132 25.926 0.00 0.00 34.78 1.40
637 931 9.727859 TCTTACTCATAGTCTAGCTAATGTAGG 57.272 37.037 0.00 0.00 32.72 3.18
638 932 8.865420 TTACTCATAGTCTAGCTAATGTAGGG 57.135 38.462 0.00 0.00 32.72 3.53
639 933 7.092748 ACTCATAGTCTAGCTAATGTAGGGA 57.907 40.000 0.00 0.00 32.72 4.20
640 934 7.527796 ACTCATAGTCTAGCTAATGTAGGGAA 58.472 38.462 0.00 0.00 32.72 3.97
641 935 8.005388 ACTCATAGTCTAGCTAATGTAGGGAAA 58.995 37.037 0.00 0.00 32.72 3.13
642 936 8.777578 TCATAGTCTAGCTAATGTAGGGAAAA 57.222 34.615 0.00 0.00 32.72 2.29
643 937 8.639761 TCATAGTCTAGCTAATGTAGGGAAAAC 58.360 37.037 0.00 0.00 32.72 2.43
644 938 8.643324 CATAGTCTAGCTAATGTAGGGAAAACT 58.357 37.037 0.00 0.00 32.72 2.66
645 939 6.879400 AGTCTAGCTAATGTAGGGAAAACTG 58.121 40.000 0.00 0.00 0.00 3.16
646 940 6.049790 GTCTAGCTAATGTAGGGAAAACTGG 58.950 44.000 0.00 0.00 0.00 4.00
647 941 5.962031 TCTAGCTAATGTAGGGAAAACTGGA 59.038 40.000 0.00 0.00 0.00 3.86
648 942 5.104259 AGCTAATGTAGGGAAAACTGGAG 57.896 43.478 0.00 0.00 0.00 3.86
649 943 4.783227 AGCTAATGTAGGGAAAACTGGAGA 59.217 41.667 0.00 0.00 0.00 3.71
650 944 5.430089 AGCTAATGTAGGGAAAACTGGAGAT 59.570 40.000 0.00 0.00 0.00 2.75
651 945 6.615726 AGCTAATGTAGGGAAAACTGGAGATA 59.384 38.462 0.00 0.00 0.00 1.98
652 946 6.931840 GCTAATGTAGGGAAAACTGGAGATAG 59.068 42.308 0.00 0.00 0.00 2.08
653 947 4.755266 TGTAGGGAAAACTGGAGATAGC 57.245 45.455 0.00 0.00 0.00 2.97
654 948 4.101114 TGTAGGGAAAACTGGAGATAGCA 58.899 43.478 0.00 0.00 0.00 3.49
655 949 3.636153 AGGGAAAACTGGAGATAGCAC 57.364 47.619 0.00 0.00 0.00 4.40
656 950 2.239907 AGGGAAAACTGGAGATAGCACC 59.760 50.000 0.00 0.00 0.00 5.01
657 951 2.026262 GGGAAAACTGGAGATAGCACCA 60.026 50.000 0.00 0.00 33.52 4.17
658 952 3.010420 GGAAAACTGGAGATAGCACCAC 58.990 50.000 0.00 0.00 31.18 4.16
659 953 2.789409 AAACTGGAGATAGCACCACC 57.211 50.000 0.00 0.00 31.18 4.61
660 954 1.656587 AACTGGAGATAGCACCACCA 58.343 50.000 0.00 0.00 31.18 4.17
662 956 0.467384 CTGGAGATAGCACCACCAGG 59.533 60.000 0.00 0.00 42.77 4.45
675 969 3.703001 CCACCAGGTTTCAGACAGTAT 57.297 47.619 0.00 0.00 0.00 2.12
676 970 3.600388 CCACCAGGTTTCAGACAGTATC 58.400 50.000 0.00 0.00 0.00 2.24
677 971 3.007940 CCACCAGGTTTCAGACAGTATCA 59.992 47.826 0.00 0.00 0.00 2.15
678 972 4.504864 CCACCAGGTTTCAGACAGTATCAA 60.505 45.833 0.00 0.00 0.00 2.57
679 973 5.063204 CACCAGGTTTCAGACAGTATCAAA 58.937 41.667 0.00 0.00 0.00 2.69
680 974 5.049405 CACCAGGTTTCAGACAGTATCAAAC 60.049 44.000 0.00 0.00 0.00 2.93
681 975 5.063204 CCAGGTTTCAGACAGTATCAAACA 58.937 41.667 0.00 0.00 0.00 2.83
682 976 5.530915 CCAGGTTTCAGACAGTATCAAACAA 59.469 40.000 0.00 0.00 0.00 2.83
683 977 6.430451 CAGGTTTCAGACAGTATCAAACAAC 58.570 40.000 0.00 0.00 0.00 3.32
684 978 6.260936 CAGGTTTCAGACAGTATCAAACAACT 59.739 38.462 0.00 0.00 0.00 3.16
685 979 6.828785 AGGTTTCAGACAGTATCAAACAACTT 59.171 34.615 0.00 0.00 0.00 2.66
686 980 6.912591 GGTTTCAGACAGTATCAAACAACTTG 59.087 38.462 0.00 0.00 36.25 3.16
687 981 7.415206 GGTTTCAGACAGTATCAAACAACTTGT 60.415 37.037 0.00 0.00 36.34 3.16
688 982 8.609176 GTTTCAGACAGTATCAAACAACTTGTA 58.391 33.333 0.00 0.00 36.34 2.41
689 983 8.902540 TTCAGACAGTATCAAACAACTTGTAT 57.097 30.769 0.00 0.00 36.34 2.29
690 984 8.902540 TCAGACAGTATCAAACAACTTGTATT 57.097 30.769 0.00 0.00 36.34 1.89
691 985 9.990360 TCAGACAGTATCAAACAACTTGTATTA 57.010 29.630 0.00 0.00 36.34 0.98
693 987 8.936864 AGACAGTATCAAACAACTTGTATTAGC 58.063 33.333 0.00 0.00 36.34 3.09
694 988 7.739295 ACAGTATCAAACAACTTGTATTAGCG 58.261 34.615 0.00 0.00 36.34 4.26
695 989 7.148474 ACAGTATCAAACAACTTGTATTAGCGG 60.148 37.037 0.00 0.00 36.34 5.52
696 990 7.064134 CAGTATCAAACAACTTGTATTAGCGGA 59.936 37.037 0.00 0.00 36.34 5.54
697 991 5.600908 TCAAACAACTTGTATTAGCGGAC 57.399 39.130 0.00 0.00 36.34 4.79
698 992 5.302360 TCAAACAACTTGTATTAGCGGACT 58.698 37.500 0.00 0.00 36.34 3.85
699 993 5.178623 TCAAACAACTTGTATTAGCGGACTG 59.821 40.000 0.00 0.00 36.34 3.51
700 994 3.000727 ACAACTTGTATTAGCGGACTGC 58.999 45.455 0.00 0.00 46.98 4.40
710 1004 3.945436 CGGACTGCAACGCTGTTA 58.055 55.556 0.00 0.00 40.59 2.41
711 1005 2.230892 CGGACTGCAACGCTGTTAA 58.769 52.632 0.00 0.00 40.59 2.01
712 1006 0.163788 CGGACTGCAACGCTGTTAAG 59.836 55.000 0.00 0.00 40.59 1.85
713 1007 1.508632 GGACTGCAACGCTGTTAAGA 58.491 50.000 0.00 0.00 40.59 2.10
714 1008 1.871039 GGACTGCAACGCTGTTAAGAA 59.129 47.619 0.00 0.00 40.59 2.52
715 1009 2.349532 GGACTGCAACGCTGTTAAGAAC 60.350 50.000 0.00 0.00 40.59 3.01
716 1010 1.602377 ACTGCAACGCTGTTAAGAACC 59.398 47.619 0.00 0.00 37.43 3.62
717 1011 0.948678 TGCAACGCTGTTAAGAACCC 59.051 50.000 0.00 0.00 0.00 4.11
718 1012 0.948678 GCAACGCTGTTAAGAACCCA 59.051 50.000 0.00 0.00 0.00 4.51
719 1013 1.334689 GCAACGCTGTTAAGAACCCAC 60.335 52.381 0.00 0.00 0.00 4.61
720 1014 2.218603 CAACGCTGTTAAGAACCCACT 58.781 47.619 0.00 0.00 0.00 4.00
721 1015 2.616842 CAACGCTGTTAAGAACCCACTT 59.383 45.455 0.00 0.00 0.00 3.16
722 1016 2.927028 ACGCTGTTAAGAACCCACTTT 58.073 42.857 0.00 0.00 0.00 2.66
723 1017 4.075963 ACGCTGTTAAGAACCCACTTTA 57.924 40.909 0.00 0.00 0.00 1.85
724 1018 3.811497 ACGCTGTTAAGAACCCACTTTAC 59.189 43.478 0.00 0.00 32.39 2.01
725 1019 4.062991 CGCTGTTAAGAACCCACTTTACT 58.937 43.478 0.00 0.00 32.79 2.24
726 1020 4.151867 CGCTGTTAAGAACCCACTTTACTC 59.848 45.833 0.00 0.00 32.79 2.59
727 1021 4.151867 GCTGTTAAGAACCCACTTTACTCG 59.848 45.833 0.00 0.00 32.79 4.18
728 1022 4.634199 TGTTAAGAACCCACTTTACTCGG 58.366 43.478 0.00 0.00 32.79 4.63
729 1023 2.853235 AAGAACCCACTTTACTCGGG 57.147 50.000 0.00 0.00 46.22 5.14
730 1024 2.019807 AGAACCCACTTTACTCGGGA 57.980 50.000 0.00 0.00 43.21 5.14
731 1025 2.332117 AGAACCCACTTTACTCGGGAA 58.668 47.619 0.00 0.00 43.21 3.97
732 1026 2.707257 AGAACCCACTTTACTCGGGAAA 59.293 45.455 0.00 0.00 43.21 3.13
733 1027 3.136992 AGAACCCACTTTACTCGGGAAAA 59.863 43.478 0.00 0.00 43.21 2.29
734 1028 3.581265 ACCCACTTTACTCGGGAAAAA 57.419 42.857 0.00 0.00 43.21 1.94
788 1082 4.680237 CCAGACAAGCGCACCGGA 62.680 66.667 9.46 0.00 0.00 5.14
835 2886 1.471119 TCCATCCACTCAGTACGGTC 58.529 55.000 0.00 0.00 0.00 4.79
853 2904 3.229184 GTACTGTCGTCGTCGCGC 61.229 66.667 0.00 0.00 36.96 6.86
944 3003 3.121328 CGTTGGCGCTCTAAATAATCTCG 60.121 47.826 7.64 0.00 0.00 4.04
951 3010 5.562307 GCGCTCTAAATAATCTCGTCCACTA 60.562 44.000 0.00 0.00 0.00 2.74
1100 3159 3.385384 CTCCGTCCAGCTGCTCCA 61.385 66.667 8.66 0.00 0.00 3.86
1214 3277 1.634757 CGCGAGCTGCAACAACCATA 61.635 55.000 0.00 0.00 46.97 2.74
1226 3293 3.191888 ACAACCATAGGTCTGAGGAGT 57.808 47.619 0.00 0.00 33.12 3.85
1419 3492 2.124507 TAGTGTCTGGCTGGGTTGGC 62.125 60.000 0.00 0.00 0.00 4.52
1637 3723 4.202441 GCATGATGATTTACACTCCCTGT 58.798 43.478 0.00 0.00 36.82 4.00
1657 3743 6.465464 CCCTGTCTTGATTGATCAGTGGATAT 60.465 42.308 0.00 0.00 38.19 1.63
1663 3749 9.716531 TCTTGATTGATCAGTGGATATTCATAC 57.283 33.333 0.00 0.00 38.19 2.39
1904 3990 6.665992 TTTGTCTATGTAGAGGTGTTGACT 57.334 37.500 0.00 0.00 32.01 3.41
1905 3991 5.644977 TGTCTATGTAGAGGTGTTGACTG 57.355 43.478 0.00 0.00 32.01 3.51
1906 3992 5.321927 TGTCTATGTAGAGGTGTTGACTGA 58.678 41.667 0.00 0.00 32.01 3.41
1907 3993 5.183331 TGTCTATGTAGAGGTGTTGACTGAC 59.817 44.000 0.00 0.00 32.01 3.51
1908 3994 3.963428 ATGTAGAGGTGTTGACTGACC 57.037 47.619 0.00 0.00 0.00 4.02
1909 3995 2.958818 TGTAGAGGTGTTGACTGACCT 58.041 47.619 0.00 0.00 45.73 3.85
1958 4044 5.185442 TGAAAATGCATAGACAAGAATGGCA 59.815 36.000 0.00 0.00 36.86 4.92
2090 4214 6.148976 AGCTATGCTATGCACATAACTGATTG 59.851 38.462 0.00 0.00 43.04 2.67
2119 4243 3.831333 TCCTCTCTGCTGATGTATCATCC 59.169 47.826 7.18 0.00 36.02 3.51
2141 4266 5.353123 TCCTTGTGCTTAATTACAATCGACC 59.647 40.000 0.00 0.00 36.34 4.79
2405 4707 8.688747 TTTAAACTGCATTCCAAATTCCAATT 57.311 26.923 0.00 0.00 0.00 2.32
2444 4748 9.265901 CAGGTATAAATGAATTACTGAGACAGG 57.734 37.037 0.00 0.00 35.51 4.00
2535 4839 7.520798 AGGATTCATTGTATCCATTGCTAAGA 58.479 34.615 20.50 0.00 43.33 2.10
2773 5079 8.115490 AGAGACATTATTTTTCTTTGTGGGAG 57.885 34.615 0.00 0.00 0.00 4.30
2849 5155 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2882 5188 8.942338 TCTAAAATATGTCCATATACATCCGC 57.058 34.615 0.41 0.00 40.52 5.54
2997 5304 1.915141 CAAAATGTGCCCTGTCCTCT 58.085 50.000 0.00 0.00 0.00 3.69
3009 5318 3.126831 CCTGTCCTCTTGCATATTCGAC 58.873 50.000 0.00 0.00 0.00 4.20
3476 6198 6.712095 TCAACAAATGACAAGACTAATCTGCT 59.288 34.615 0.00 0.00 31.26 4.24
3600 6322 8.613060 AGATATGATTACAAACATGGCTAGTG 57.387 34.615 0.00 0.00 0.00 2.74
3683 6416 6.405538 TCTTGAATGCCAAAATTAATGGGAC 58.594 36.000 11.12 0.58 41.36 4.46
3889 6622 3.007635 CAGATCTTCAGCTGCATCAACA 58.992 45.455 9.47 0.00 0.00 3.33
4077 6810 3.192212 GGAAATCCTTATGGCATAGCAGC 59.808 47.826 7.35 0.00 0.00 5.25
4084 6817 2.359981 ATGGCATAGCAGCAGACATT 57.640 45.000 0.00 0.00 35.83 2.71
4369 7122 4.613925 TCAGAGTGAAGCTGAACTGATT 57.386 40.909 6.30 0.00 39.29 2.57
4384 7137 4.698583 ACTGATTGCTGAGAAAAGATGC 57.301 40.909 0.00 0.00 0.00 3.91
4480 7243 6.878923 TGCTGCTACAGAAATTACTAACATGT 59.121 34.615 0.00 0.00 32.44 3.21
4969 11448 8.327429 ACAAGAACGTTTGCAGAAATTAAATTG 58.673 29.630 0.46 0.00 0.00 2.32
5009 11503 1.841663 CTTCCCGCAACAGAACACCG 61.842 60.000 0.00 0.00 0.00 4.94
5032 11526 5.049060 CGATGGACGAAAGATCATAGTCTCT 60.049 44.000 10.18 1.44 45.77 3.10
5079 11573 6.827641 TGTAAAGAGTCGGATTCAAAAATCG 58.172 36.000 3.25 0.00 41.94 3.34
5090 11584 6.095377 GGATTCAAAAATCGCTTGATGAAGT 58.905 36.000 0.00 0.00 41.94 3.01
5101 11595 1.489481 TGATGAAGTCCCATCTCGCT 58.511 50.000 0.00 0.00 42.49 4.93
5178 11672 1.065126 GGTAGTCCAGCTTTCCTGCAT 60.065 52.381 0.00 0.00 40.36 3.96
5205 12745 0.328258 AATGAACTCCCCTTGTCCCG 59.672 55.000 0.00 0.00 0.00 5.14
5208 12748 0.618981 GAACTCCCCTTGTCCCGAAT 59.381 55.000 0.00 0.00 0.00 3.34
5302 13497 1.166129 GCCTTCCCTTCGGTTTTCTC 58.834 55.000 0.00 0.00 0.00 2.87
5432 13627 5.456921 AATCTTTTCTCCCTGATTAGCCA 57.543 39.130 0.00 0.00 0.00 4.75
5443 13638 4.504864 CCCTGATTAGCCATATTCCGAACA 60.505 45.833 0.00 0.00 0.00 3.18
5474 13669 5.065731 CACTCCCAGAGAAATACAAGCAATC 59.934 44.000 0.00 0.00 33.32 2.67
5475 13670 5.178096 TCCCAGAGAAATACAAGCAATCA 57.822 39.130 0.00 0.00 0.00 2.57
5477 13672 4.337555 CCCAGAGAAATACAAGCAATCAGG 59.662 45.833 0.00 0.00 0.00 3.86
5478 13673 4.337555 CCAGAGAAATACAAGCAATCAGGG 59.662 45.833 0.00 0.00 0.00 4.45
5479 13674 4.337555 CAGAGAAATACAAGCAATCAGGGG 59.662 45.833 0.00 0.00 0.00 4.79
5480 13675 4.228210 AGAGAAATACAAGCAATCAGGGGA 59.772 41.667 0.00 0.00 0.00 4.81
5481 13676 4.934356 AGAAATACAAGCAATCAGGGGAA 58.066 39.130 0.00 0.00 0.00 3.97
5482 13677 5.332743 AGAAATACAAGCAATCAGGGGAAA 58.667 37.500 0.00 0.00 0.00 3.13
5483 13678 5.420104 AGAAATACAAGCAATCAGGGGAAAG 59.580 40.000 0.00 0.00 0.00 2.62
5484 13679 2.683211 ACAAGCAATCAGGGGAAAGT 57.317 45.000 0.00 0.00 0.00 2.66
5485 13680 3.806949 ACAAGCAATCAGGGGAAAGTA 57.193 42.857 0.00 0.00 0.00 2.24
5487 13682 4.273318 ACAAGCAATCAGGGGAAAGTATC 58.727 43.478 0.00 0.00 0.00 2.24
5488 13683 3.199880 AGCAATCAGGGGAAAGTATCG 57.800 47.619 0.00 0.00 0.00 2.92
5489 13684 2.158755 AGCAATCAGGGGAAAGTATCGG 60.159 50.000 0.00 0.00 0.00 4.18
5491 13686 2.172717 CAATCAGGGGAAAGTATCGGGT 59.827 50.000 0.00 0.00 0.00 5.28
5492 13687 1.200519 TCAGGGGAAAGTATCGGGTG 58.799 55.000 0.00 0.00 0.00 4.61
5493 13688 0.463833 CAGGGGAAAGTATCGGGTGC 60.464 60.000 0.00 0.00 0.00 5.01
5494 13689 0.620700 AGGGGAAAGTATCGGGTGCT 60.621 55.000 0.00 0.00 0.00 4.40
5496 13691 0.179054 GGGAAAGTATCGGGTGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
5506 13701 2.045536 GGTGCTCCCAGCCTTGAG 60.046 66.667 0.00 0.00 41.51 3.02
5507 13702 2.045536 GTGCTCCCAGCCTTGAGG 60.046 66.667 0.00 0.00 41.51 3.86
5508 13703 2.530151 TGCTCCCAGCCTTGAGGT 60.530 61.111 0.00 0.00 41.51 3.85
5509 13704 1.229496 TGCTCCCAGCCTTGAGGTA 60.229 57.895 0.00 0.00 41.51 3.08
5510 13705 1.222113 GCTCCCAGCCTTGAGGTAC 59.778 63.158 0.00 0.00 34.48 3.34
5511 13706 1.268283 GCTCCCAGCCTTGAGGTACT 61.268 60.000 0.00 0.00 36.75 2.73
5512 13707 3.180406 GCTCCCAGCCTTGAGGTACTC 62.180 61.905 0.00 0.00 46.08 2.59
5522 13717 2.363925 AGGTACTCCCGGTGCTCC 60.364 66.667 0.00 0.00 38.74 4.70
5523 13718 2.682494 GGTACTCCCGGTGCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
5524 13719 2.288025 GGTACTCCCGGTGCTCCAA 61.288 63.158 0.00 0.00 0.00 3.53
5526 13721 0.462047 GTACTCCCGGTGCTCCAATG 60.462 60.000 0.00 0.00 0.00 2.82
5533 13728 3.054287 TCCCGGTGCTCCAATGTTATAAA 60.054 43.478 0.00 0.00 0.00 1.40
5536 13731 5.099575 CCGGTGCTCCAATGTTATAAAAAC 58.900 41.667 5.52 0.00 0.00 2.43
5538 13733 6.329496 CGGTGCTCCAATGTTATAAAAACAT 58.671 36.000 5.52 0.00 42.19 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 77 9.837525 CTCGTTTCTGTTACTACTAGTAAATGT 57.162 33.333 9.79 1.46 41.80 2.71
113 116 1.888512 GACCATTCAACCACATGCTGT 59.111 47.619 0.00 0.00 0.00 4.40
114 117 1.887854 TGACCATTCAACCACATGCTG 59.112 47.619 0.00 0.00 0.00 4.41
131 134 3.433740 GGGGATACAATTGTCCTCCTGAC 60.434 52.174 26.90 18.51 41.35 3.51
133 136 2.509548 TGGGGATACAATTGTCCTCCTG 59.490 50.000 26.90 0.00 32.27 3.86
174 177 1.448013 GCACCGCTGTCTAAGTCCC 60.448 63.158 0.00 0.00 0.00 4.46
226 229 1.041447 CCCTGGTAGTCGGGAATCGT 61.041 60.000 0.00 0.00 44.90 3.73
241 244 1.042559 AAGGCACCACAAACACCCTG 61.043 55.000 0.00 0.00 0.00 4.45
243 246 0.179086 CAAAGGCACCACAAACACCC 60.179 55.000 0.00 0.00 0.00 4.61
249 252 6.491745 TCTTAATATTGACAAAGGCACCACAA 59.508 34.615 0.00 0.00 0.00 3.33
255 258 8.407832 CACATCATCTTAATATTGACAAAGGCA 58.592 33.333 0.00 0.00 0.00 4.75
268 271 4.228210 ACTGGGTCACCACATCATCTTAAT 59.772 41.667 0.00 0.00 43.37 1.40
270 273 3.181329 ACTGGGTCACCACATCATCTTA 58.819 45.455 0.00 0.00 43.37 2.10
282 314 3.594134 CATCTCTGAAAGACTGGGTCAC 58.406 50.000 0.52 0.00 38.67 3.67
283 315 2.568956 CCATCTCTGAAAGACTGGGTCA 59.431 50.000 0.52 0.00 38.67 4.02
285 317 2.569404 GACCATCTCTGAAAGACTGGGT 59.431 50.000 0.00 0.00 38.67 4.51
286 318 2.568956 TGACCATCTCTGAAAGACTGGG 59.431 50.000 6.23 0.00 38.67 4.45
304 336 1.002684 CGCACGTCCTACCTCTATGAC 60.003 57.143 0.00 0.00 0.00 3.06
338 370 2.319136 TACATACGCACATCAACCCC 57.681 50.000 0.00 0.00 0.00 4.95
346 378 1.404035 AGACGCTCATACATACGCACA 59.596 47.619 0.00 0.00 0.00 4.57
347 379 1.781429 CAGACGCTCATACATACGCAC 59.219 52.381 0.00 0.00 0.00 5.34
348 380 1.404035 ACAGACGCTCATACATACGCA 59.596 47.619 0.00 0.00 0.00 5.24
350 382 3.953766 AGAACAGACGCTCATACATACG 58.046 45.455 0.00 0.00 0.00 3.06
357 389 2.085320 AGTACGAGAACAGACGCTCAT 58.915 47.619 0.00 0.00 0.00 2.90
358 390 1.197036 CAGTACGAGAACAGACGCTCA 59.803 52.381 0.00 0.00 0.00 4.26
360 392 1.069159 CACAGTACGAGAACAGACGCT 60.069 52.381 0.00 0.00 0.00 5.07
363 395 4.026804 CACAAACACAGTACGAGAACAGAC 60.027 45.833 0.00 0.00 0.00 3.51
369 401 6.964741 TTAAAACACAAACACAGTACGAGA 57.035 33.333 0.00 0.00 0.00 4.04
370 402 8.437443 TTTTTAAAACACAAACACAGTACGAG 57.563 30.769 0.00 0.00 0.00 4.18
434 728 4.074970 ACTCAGGTTAAGGATGCTTTGTG 58.925 43.478 4.26 1.00 0.00 3.33
445 739 7.615582 TGCTCATTGATAAACTCAGGTTAAG 57.384 36.000 0.00 0.00 34.68 1.85
458 752 4.641541 CACAGGGTTGAATGCTCATTGATA 59.358 41.667 0.00 0.00 0.00 2.15
459 753 3.446161 CACAGGGTTGAATGCTCATTGAT 59.554 43.478 0.00 0.00 0.00 2.57
460 754 2.821378 CACAGGGTTGAATGCTCATTGA 59.179 45.455 0.00 0.00 0.00 2.57
461 755 2.821378 TCACAGGGTTGAATGCTCATTG 59.179 45.455 0.00 0.00 0.00 2.82
462 756 3.159213 TCACAGGGTTGAATGCTCATT 57.841 42.857 0.00 0.00 0.00 2.57
463 757 2.821969 GTTCACAGGGTTGAATGCTCAT 59.178 45.455 0.00 0.00 37.80 2.90
464 758 2.158623 AGTTCACAGGGTTGAATGCTCA 60.159 45.455 0.00 0.00 37.80 4.26
465 759 2.508526 AGTTCACAGGGTTGAATGCTC 58.491 47.619 0.00 0.00 37.80 4.26
466 760 2.664402 AGTTCACAGGGTTGAATGCT 57.336 45.000 0.00 0.00 37.80 3.79
467 761 3.068024 TGAAAGTTCACAGGGTTGAATGC 59.932 43.478 0.00 0.00 37.80 3.56
468 762 4.916983 TGAAAGTTCACAGGGTTGAATG 57.083 40.909 0.00 0.00 37.80 2.67
469 763 6.209391 CCTATTGAAAGTTCACAGGGTTGAAT 59.791 38.462 10.94 0.00 37.80 2.57
470 764 5.534654 CCTATTGAAAGTTCACAGGGTTGAA 59.465 40.000 10.94 0.00 36.60 2.69
471 765 5.070001 CCTATTGAAAGTTCACAGGGTTGA 58.930 41.667 10.94 0.00 36.60 3.18
472 766 4.218417 CCCTATTGAAAGTTCACAGGGTTG 59.782 45.833 21.75 6.53 45.86 3.77
473 767 4.407365 CCCTATTGAAAGTTCACAGGGTT 58.593 43.478 21.75 0.00 45.86 4.11
474 768 4.034285 CCCTATTGAAAGTTCACAGGGT 57.966 45.455 21.75 1.69 45.86 4.34
476 770 3.690460 AGCCCTATTGAAAGTTCACAGG 58.310 45.455 11.53 11.53 38.49 4.00
477 771 5.241506 TCAAAGCCCTATTGAAAGTTCACAG 59.758 40.000 0.00 0.00 36.83 3.66
478 772 5.009610 GTCAAAGCCCTATTGAAAGTTCACA 59.990 40.000 0.00 0.00 38.44 3.58
479 773 5.461526 GTCAAAGCCCTATTGAAAGTTCAC 58.538 41.667 0.00 0.00 38.44 3.18
480 774 4.215399 CGTCAAAGCCCTATTGAAAGTTCA 59.785 41.667 0.00 0.00 38.44 3.18
481 775 4.379499 CCGTCAAAGCCCTATTGAAAGTTC 60.379 45.833 0.00 0.00 38.44 3.01
482 776 3.506067 CCGTCAAAGCCCTATTGAAAGTT 59.494 43.478 0.00 0.00 38.44 2.66
483 777 3.081804 CCGTCAAAGCCCTATTGAAAGT 58.918 45.455 0.00 0.00 38.44 2.66
484 778 3.127030 GTCCGTCAAAGCCCTATTGAAAG 59.873 47.826 0.00 0.00 38.44 2.62
485 779 3.078837 GTCCGTCAAAGCCCTATTGAAA 58.921 45.455 0.00 0.00 38.44 2.69
486 780 2.706890 GTCCGTCAAAGCCCTATTGAA 58.293 47.619 0.00 0.00 38.44 2.69
487 781 1.404986 CGTCCGTCAAAGCCCTATTGA 60.405 52.381 0.00 0.00 34.56 2.57
488 782 1.006832 CGTCCGTCAAAGCCCTATTG 58.993 55.000 0.00 0.00 0.00 1.90
489 783 0.899720 TCGTCCGTCAAAGCCCTATT 59.100 50.000 0.00 0.00 0.00 1.73
490 784 1.120530 ATCGTCCGTCAAAGCCCTAT 58.879 50.000 0.00 0.00 0.00 2.57
491 785 0.899720 AATCGTCCGTCAAAGCCCTA 59.100 50.000 0.00 0.00 0.00 3.53
492 786 0.391263 GAATCGTCCGTCAAAGCCCT 60.391 55.000 0.00 0.00 0.00 5.19
493 787 1.693083 CGAATCGTCCGTCAAAGCCC 61.693 60.000 0.00 0.00 0.00 5.19
494 788 1.693083 CCGAATCGTCCGTCAAAGCC 61.693 60.000 0.82 0.00 0.00 4.35
495 789 1.012486 ACCGAATCGTCCGTCAAAGC 61.012 55.000 0.82 0.00 0.00 3.51
496 790 1.425412 AACCGAATCGTCCGTCAAAG 58.575 50.000 0.82 0.00 0.00 2.77
497 791 2.721274 TAACCGAATCGTCCGTCAAA 57.279 45.000 0.82 0.00 0.00 2.69
498 792 2.721274 TTAACCGAATCGTCCGTCAA 57.279 45.000 0.82 0.00 0.00 3.18
499 793 2.480073 GGATTAACCGAATCGTCCGTCA 60.480 50.000 0.82 0.00 44.41 4.35
500 794 2.122564 GGATTAACCGAATCGTCCGTC 58.877 52.381 0.82 0.00 44.41 4.79
501 795 2.214387 GGATTAACCGAATCGTCCGT 57.786 50.000 0.82 0.00 44.41 4.69
512 806 4.098960 TGTCCATAGACTGACGGATTAACC 59.901 45.833 0.00 0.00 43.91 2.85
513 807 5.258456 TGTCCATAGACTGACGGATTAAC 57.742 43.478 0.00 0.00 43.91 2.01
514 808 5.833667 AGATGTCCATAGACTGACGGATTAA 59.166 40.000 0.00 0.00 43.91 1.40
515 809 5.241728 CAGATGTCCATAGACTGACGGATTA 59.758 44.000 0.00 0.00 43.91 1.75
516 810 4.038522 CAGATGTCCATAGACTGACGGATT 59.961 45.833 0.00 0.00 43.91 3.01
517 811 3.571828 CAGATGTCCATAGACTGACGGAT 59.428 47.826 0.00 0.00 43.91 4.18
518 812 2.952310 CAGATGTCCATAGACTGACGGA 59.048 50.000 0.00 0.00 43.91 4.69
519 813 2.952310 TCAGATGTCCATAGACTGACGG 59.048 50.000 0.00 0.00 43.91 4.79
520 814 4.276926 TCATCAGATGTCCATAGACTGACG 59.723 45.833 10.34 0.00 43.91 4.35
521 815 5.781210 TCATCAGATGTCCATAGACTGAC 57.219 43.478 10.34 0.00 43.91 3.51
522 816 6.342338 CATCATCAGATGTCCATAGACTGA 57.658 41.667 10.34 0.00 45.28 3.41
535 829 5.535406 GGCTTCTTGATTTCCATCATCAGAT 59.465 40.000 0.00 0.00 39.28 2.90
536 830 4.885907 GGCTTCTTGATTTCCATCATCAGA 59.114 41.667 0.00 0.00 39.28 3.27
537 831 4.037684 GGGCTTCTTGATTTCCATCATCAG 59.962 45.833 0.00 0.00 39.28 2.90
538 832 3.956199 GGGCTTCTTGATTTCCATCATCA 59.044 43.478 0.00 0.00 39.28 3.07
539 833 3.320256 GGGGCTTCTTGATTTCCATCATC 59.680 47.826 0.00 0.00 39.28 2.92
540 834 3.052338 AGGGGCTTCTTGATTTCCATCAT 60.052 43.478 0.00 0.00 39.28 2.45
541 835 2.312741 AGGGGCTTCTTGATTTCCATCA 59.687 45.455 0.00 0.00 37.67 3.07
542 836 2.692041 CAGGGGCTTCTTGATTTCCATC 59.308 50.000 0.00 0.00 0.00 3.51
543 837 2.743553 CAGGGGCTTCTTGATTTCCAT 58.256 47.619 0.00 0.00 0.00 3.41
544 838 1.892329 GCAGGGGCTTCTTGATTTCCA 60.892 52.381 0.00 0.00 36.96 3.53
545 839 0.820226 GCAGGGGCTTCTTGATTTCC 59.180 55.000 0.00 0.00 36.96 3.13
546 840 1.475682 CTGCAGGGGCTTCTTGATTTC 59.524 52.381 5.57 0.00 41.91 2.17
547 841 1.553706 CTGCAGGGGCTTCTTGATTT 58.446 50.000 5.57 0.00 41.91 2.17
548 842 0.969409 GCTGCAGGGGCTTCTTGATT 60.969 55.000 17.12 0.00 41.91 2.57
549 843 1.379576 GCTGCAGGGGCTTCTTGAT 60.380 57.895 17.12 0.00 41.91 2.57
550 844 2.034687 GCTGCAGGGGCTTCTTGA 59.965 61.111 17.12 0.00 41.91 3.02
551 845 1.605738 AAGCTGCAGGGGCTTCTTG 60.606 57.895 17.12 0.00 45.45 3.02
552 846 2.849536 AAGCTGCAGGGGCTTCTT 59.150 55.556 17.12 6.01 45.45 2.52
556 850 4.093291 CTCGAAGCTGCAGGGGCT 62.093 66.667 17.12 4.15 42.31 5.19
558 852 4.479993 CCCTCGAAGCTGCAGGGG 62.480 72.222 17.12 12.48 43.12 4.79
560 854 1.302832 AAACCCTCGAAGCTGCAGG 60.303 57.895 17.12 0.00 0.00 4.85
561 855 0.886490 ACAAACCCTCGAAGCTGCAG 60.886 55.000 10.11 10.11 0.00 4.41
562 856 0.465460 AACAAACCCTCGAAGCTGCA 60.465 50.000 1.02 0.00 0.00 4.41
563 857 0.238553 GAACAAACCCTCGAAGCTGC 59.761 55.000 0.00 0.00 0.00 5.25
564 858 0.875059 GGAACAAACCCTCGAAGCTG 59.125 55.000 0.00 0.00 0.00 4.24
565 859 0.602905 CGGAACAAACCCTCGAAGCT 60.603 55.000 0.00 0.00 0.00 3.74
566 860 1.866925 CGGAACAAACCCTCGAAGC 59.133 57.895 0.00 0.00 0.00 3.86
567 861 0.602905 AGCGGAACAAACCCTCGAAG 60.603 55.000 0.00 0.00 0.00 3.79
568 862 0.179040 AAGCGGAACAAACCCTCGAA 60.179 50.000 0.00 0.00 0.00 3.71
569 863 0.179040 AAAGCGGAACAAACCCTCGA 60.179 50.000 0.00 0.00 0.00 4.04
570 864 0.666374 AAAAGCGGAACAAACCCTCG 59.334 50.000 0.00 0.00 0.00 4.63
571 865 3.994204 TTAAAAGCGGAACAAACCCTC 57.006 42.857 0.00 0.00 0.00 4.30
572 866 4.342665 TCAATTAAAAGCGGAACAAACCCT 59.657 37.500 0.00 0.00 0.00 4.34
573 867 4.623002 TCAATTAAAAGCGGAACAAACCC 58.377 39.130 0.00 0.00 0.00 4.11
574 868 5.923684 TGATCAATTAAAAGCGGAACAAACC 59.076 36.000 0.00 0.00 0.00 3.27
575 869 7.581011 ATGATCAATTAAAAGCGGAACAAAC 57.419 32.000 0.00 0.00 0.00 2.93
576 870 9.868277 ATTATGATCAATTAAAAGCGGAACAAA 57.132 25.926 0.00 0.00 0.00 2.83
577 871 9.868277 AATTATGATCAATTAAAAGCGGAACAA 57.132 25.926 0.00 0.00 0.00 2.83
611 905 9.727859 CCTACATTAGCTAGACTATGAGTAAGA 57.272 37.037 9.59 0.00 0.00 2.10
612 906 8.952278 CCCTACATTAGCTAGACTATGAGTAAG 58.048 40.741 9.59 2.94 0.00 2.34
613 907 8.666821 TCCCTACATTAGCTAGACTATGAGTAA 58.333 37.037 9.59 0.00 0.00 2.24
614 908 8.215954 TCCCTACATTAGCTAGACTATGAGTA 57.784 38.462 9.59 0.00 0.00 2.59
615 909 7.092748 TCCCTACATTAGCTAGACTATGAGT 57.907 40.000 9.59 0.00 0.00 3.41
616 910 8.410673 TTTCCCTACATTAGCTAGACTATGAG 57.589 38.462 9.59 3.93 0.00 2.90
617 911 8.639761 GTTTTCCCTACATTAGCTAGACTATGA 58.360 37.037 9.59 0.00 0.00 2.15
618 912 8.643324 AGTTTTCCCTACATTAGCTAGACTATG 58.357 37.037 0.00 0.00 0.00 2.23
619 913 8.643324 CAGTTTTCCCTACATTAGCTAGACTAT 58.357 37.037 0.00 0.00 0.00 2.12
620 914 7.069578 CCAGTTTTCCCTACATTAGCTAGACTA 59.930 40.741 0.00 0.00 0.00 2.59
621 915 6.127026 CCAGTTTTCCCTACATTAGCTAGACT 60.127 42.308 0.00 0.00 0.00 3.24
622 916 6.049790 CCAGTTTTCCCTACATTAGCTAGAC 58.950 44.000 0.00 0.00 0.00 2.59
623 917 5.962031 TCCAGTTTTCCCTACATTAGCTAGA 59.038 40.000 0.00 0.00 0.00 2.43
624 918 6.098409 TCTCCAGTTTTCCCTACATTAGCTAG 59.902 42.308 0.00 0.00 0.00 3.42
625 919 5.962031 TCTCCAGTTTTCCCTACATTAGCTA 59.038 40.000 0.00 0.00 0.00 3.32
626 920 4.783227 TCTCCAGTTTTCCCTACATTAGCT 59.217 41.667 0.00 0.00 0.00 3.32
627 921 5.099042 TCTCCAGTTTTCCCTACATTAGC 57.901 43.478 0.00 0.00 0.00 3.09
628 922 6.931840 GCTATCTCCAGTTTTCCCTACATTAG 59.068 42.308 0.00 0.00 0.00 1.73
629 923 6.385759 TGCTATCTCCAGTTTTCCCTACATTA 59.614 38.462 0.00 0.00 0.00 1.90
630 924 5.191722 TGCTATCTCCAGTTTTCCCTACATT 59.808 40.000 0.00 0.00 0.00 2.71
631 925 4.721776 TGCTATCTCCAGTTTTCCCTACAT 59.278 41.667 0.00 0.00 0.00 2.29
632 926 4.081087 GTGCTATCTCCAGTTTTCCCTACA 60.081 45.833 0.00 0.00 0.00 2.74
633 927 4.443621 GTGCTATCTCCAGTTTTCCCTAC 58.556 47.826 0.00 0.00 0.00 3.18
634 928 3.454812 GGTGCTATCTCCAGTTTTCCCTA 59.545 47.826 0.00 0.00 0.00 3.53
635 929 2.239907 GGTGCTATCTCCAGTTTTCCCT 59.760 50.000 0.00 0.00 0.00 4.20
636 930 2.026262 TGGTGCTATCTCCAGTTTTCCC 60.026 50.000 0.00 0.00 32.53 3.97
637 931 3.010420 GTGGTGCTATCTCCAGTTTTCC 58.990 50.000 0.00 0.00 36.62 3.13
638 932 3.010420 GGTGGTGCTATCTCCAGTTTTC 58.990 50.000 0.00 0.00 36.62 2.29
639 933 2.375174 TGGTGGTGCTATCTCCAGTTTT 59.625 45.455 0.00 0.00 36.62 2.43
640 934 1.985159 TGGTGGTGCTATCTCCAGTTT 59.015 47.619 0.00 0.00 36.62 2.66
641 935 1.556911 CTGGTGGTGCTATCTCCAGTT 59.443 52.381 11.64 0.00 40.25 3.16
642 936 1.198713 CTGGTGGTGCTATCTCCAGT 58.801 55.000 11.64 0.00 40.25 4.00
643 937 0.467384 CCTGGTGGTGCTATCTCCAG 59.533 60.000 12.41 12.41 43.46 3.86
644 938 0.252696 ACCTGGTGGTGCTATCTCCA 60.253 55.000 0.00 0.00 46.51 3.86
645 939 2.609046 ACCTGGTGGTGCTATCTCC 58.391 57.895 0.00 0.00 46.51 3.71
655 949 3.007940 TGATACTGTCTGAAACCTGGTGG 59.992 47.826 0.00 0.00 39.83 4.61
656 950 4.271696 TGATACTGTCTGAAACCTGGTG 57.728 45.455 0.00 0.00 0.00 4.17
657 951 4.974645 TTGATACTGTCTGAAACCTGGT 57.025 40.909 0.00 0.00 0.00 4.00
658 952 5.063204 TGTTTGATACTGTCTGAAACCTGG 58.937 41.667 5.97 0.00 0.00 4.45
659 953 6.260936 AGTTGTTTGATACTGTCTGAAACCTG 59.739 38.462 5.97 0.00 0.00 4.00
660 954 6.357367 AGTTGTTTGATACTGTCTGAAACCT 58.643 36.000 5.97 0.00 0.00 3.50
661 955 6.619801 AGTTGTTTGATACTGTCTGAAACC 57.380 37.500 5.97 0.00 0.00 3.27
662 956 7.472543 ACAAGTTGTTTGATACTGTCTGAAAC 58.527 34.615 1.64 2.21 39.21 2.78
663 957 7.624360 ACAAGTTGTTTGATACTGTCTGAAA 57.376 32.000 1.64 0.00 39.21 2.69
664 958 8.902540 ATACAAGTTGTTTGATACTGTCTGAA 57.097 30.769 14.90 0.00 39.21 3.02
665 959 8.902540 AATACAAGTTGTTTGATACTGTCTGA 57.097 30.769 14.90 0.00 39.21 3.27
667 961 8.936864 GCTAATACAAGTTGTTTGATACTGTCT 58.063 33.333 14.90 0.00 39.21 3.41
668 962 7.898309 CGCTAATACAAGTTGTTTGATACTGTC 59.102 37.037 14.90 0.00 39.21 3.51
669 963 7.148474 CCGCTAATACAAGTTGTTTGATACTGT 60.148 37.037 14.90 0.00 39.21 3.55
670 964 7.064134 TCCGCTAATACAAGTTGTTTGATACTG 59.936 37.037 14.90 0.00 39.21 2.74
671 965 7.064253 GTCCGCTAATACAAGTTGTTTGATACT 59.936 37.037 14.90 0.00 39.21 2.12
672 966 7.064253 AGTCCGCTAATACAAGTTGTTTGATAC 59.936 37.037 14.90 3.52 39.21 2.24
673 967 7.064134 CAGTCCGCTAATACAAGTTGTTTGATA 59.936 37.037 14.90 0.00 39.21 2.15
674 968 5.938125 AGTCCGCTAATACAAGTTGTTTGAT 59.062 36.000 14.90 0.00 39.21 2.57
675 969 5.178623 CAGTCCGCTAATACAAGTTGTTTGA 59.821 40.000 14.90 0.00 39.21 2.69
676 970 5.382303 CAGTCCGCTAATACAAGTTGTTTG 58.618 41.667 14.90 0.00 42.68 2.93
677 971 4.083484 GCAGTCCGCTAATACAAGTTGTTT 60.083 41.667 14.90 10.59 37.77 2.83
678 972 3.435671 GCAGTCCGCTAATACAAGTTGTT 59.564 43.478 14.90 0.00 37.77 2.83
679 973 3.000727 GCAGTCCGCTAATACAAGTTGT 58.999 45.455 14.05 14.05 37.77 3.32
680 974 3.000041 TGCAGTCCGCTAATACAAGTTG 59.000 45.455 0.00 0.00 43.06 3.16
681 975 3.328382 TGCAGTCCGCTAATACAAGTT 57.672 42.857 0.00 0.00 43.06 2.66
682 976 3.000727 GTTGCAGTCCGCTAATACAAGT 58.999 45.455 0.00 0.00 43.06 3.16
683 977 2.029244 CGTTGCAGTCCGCTAATACAAG 59.971 50.000 0.00 0.00 43.06 3.16
684 978 1.996898 CGTTGCAGTCCGCTAATACAA 59.003 47.619 0.00 0.00 43.06 2.41
685 979 1.635844 CGTTGCAGTCCGCTAATACA 58.364 50.000 0.00 0.00 43.06 2.29
686 980 0.300789 GCGTTGCAGTCCGCTAATAC 59.699 55.000 16.95 0.00 46.08 1.89
687 981 2.673074 GCGTTGCAGTCCGCTAATA 58.327 52.632 16.95 0.00 46.08 0.98
688 982 3.486263 GCGTTGCAGTCCGCTAAT 58.514 55.556 16.95 0.00 46.08 1.73
693 987 0.163788 CTTAACAGCGTTGCAGTCCG 59.836 55.000 0.00 0.00 0.00 4.79
694 988 1.508632 TCTTAACAGCGTTGCAGTCC 58.491 50.000 0.00 0.00 0.00 3.85
695 989 2.349532 GGTTCTTAACAGCGTTGCAGTC 60.350 50.000 0.00 0.00 0.00 3.51
696 990 1.602377 GGTTCTTAACAGCGTTGCAGT 59.398 47.619 0.00 0.00 0.00 4.40
697 991 1.069227 GGGTTCTTAACAGCGTTGCAG 60.069 52.381 0.00 0.00 0.00 4.41
698 992 0.948678 GGGTTCTTAACAGCGTTGCA 59.051 50.000 0.00 0.00 0.00 4.08
699 993 0.948678 TGGGTTCTTAACAGCGTTGC 59.051 50.000 0.00 0.00 0.00 4.17
700 994 2.218603 AGTGGGTTCTTAACAGCGTTG 58.781 47.619 0.00 0.00 0.00 4.10
701 995 2.632987 AGTGGGTTCTTAACAGCGTT 57.367 45.000 0.02 0.02 0.00 4.84
702 996 2.632987 AAGTGGGTTCTTAACAGCGT 57.367 45.000 0.00 0.00 0.00 5.07
703 997 4.062991 AGTAAAGTGGGTTCTTAACAGCG 58.937 43.478 0.00 0.00 0.00 5.18
704 998 4.151867 CGAGTAAAGTGGGTTCTTAACAGC 59.848 45.833 0.00 0.00 0.00 4.40
705 999 4.689345 CCGAGTAAAGTGGGTTCTTAACAG 59.311 45.833 0.00 0.00 0.00 3.16
706 1000 4.503643 CCCGAGTAAAGTGGGTTCTTAACA 60.504 45.833 0.00 0.00 38.18 2.41
707 1001 3.999001 CCCGAGTAAAGTGGGTTCTTAAC 59.001 47.826 0.00 0.00 38.18 2.01
708 1002 3.903090 TCCCGAGTAAAGTGGGTTCTTAA 59.097 43.478 0.00 0.00 43.75 1.85
709 1003 3.509442 TCCCGAGTAAAGTGGGTTCTTA 58.491 45.455 0.00 0.00 43.75 2.10
710 1004 2.332117 TCCCGAGTAAAGTGGGTTCTT 58.668 47.619 0.00 0.00 43.75 2.52
711 1005 2.019807 TCCCGAGTAAAGTGGGTTCT 57.980 50.000 0.00 0.00 43.75 3.01
712 1006 2.845363 TTCCCGAGTAAAGTGGGTTC 57.155 50.000 0.00 0.00 43.75 3.62
713 1007 3.581265 TTTTCCCGAGTAAAGTGGGTT 57.419 42.857 0.00 0.00 43.75 4.11
714 1008 3.581265 TTTTTCCCGAGTAAAGTGGGT 57.419 42.857 0.00 0.00 43.75 4.51
733 1027 4.498009 CGTCCAATCAGCAACTCAGTTTTT 60.498 41.667 0.00 0.00 0.00 1.94
734 1028 3.003689 CGTCCAATCAGCAACTCAGTTTT 59.996 43.478 0.00 0.00 0.00 2.43
735 1029 2.549754 CGTCCAATCAGCAACTCAGTTT 59.450 45.455 0.00 0.00 0.00 2.66
736 1030 2.146342 CGTCCAATCAGCAACTCAGTT 58.854 47.619 0.00 0.00 0.00 3.16
737 1031 1.800805 CGTCCAATCAGCAACTCAGT 58.199 50.000 0.00 0.00 0.00 3.41
738 1032 0.445436 GCGTCCAATCAGCAACTCAG 59.555 55.000 0.00 0.00 0.00 3.35
739 1033 0.035317 AGCGTCCAATCAGCAACTCA 59.965 50.000 0.00 0.00 0.00 3.41
740 1034 0.445436 CAGCGTCCAATCAGCAACTC 59.555 55.000 0.00 0.00 0.00 3.01
741 1035 0.035317 TCAGCGTCCAATCAGCAACT 59.965 50.000 0.00 0.00 0.00 3.16
742 1036 0.166814 GTCAGCGTCCAATCAGCAAC 59.833 55.000 0.00 0.00 0.00 4.17
743 1037 0.250252 TGTCAGCGTCCAATCAGCAA 60.250 50.000 0.00 0.00 0.00 3.91
744 1038 0.036105 ATGTCAGCGTCCAATCAGCA 60.036 50.000 0.00 0.00 0.00 4.41
788 1082 2.649034 CGTGTACGTGGTCTGGCT 59.351 61.111 0.00 0.00 34.11 4.75
835 2886 2.931067 CGCGACGACGACAGTACG 60.931 66.667 12.29 0.00 42.66 3.67
878 2929 2.124903 CGCTACTTATACCCTGCGTTG 58.875 52.381 0.00 0.00 38.81 4.10
914 2973 2.799540 GAGCGCCAACGATTCGGAC 61.800 63.158 11.29 0.00 43.93 4.79
944 3003 0.042881 AGGGGAGGGAGTTAGTGGAC 59.957 60.000 0.00 0.00 0.00 4.02
951 3010 0.400670 GATAGGCAGGGGAGGGAGTT 60.401 60.000 0.00 0.00 0.00 3.01
1214 3277 1.476007 AAAGCGCACTCCTCAGACCT 61.476 55.000 11.47 0.00 0.00 3.85
1226 3293 0.851495 CGCATGAAAACAAAAGCGCA 59.149 45.000 11.47 0.00 38.68 6.09
1546 3632 3.113322 GTTCGCTCAACGCTGTATCATA 58.887 45.455 0.00 0.00 43.23 2.15
1548 3634 1.336424 TGTTCGCTCAACGCTGTATCA 60.336 47.619 0.00 0.00 43.23 2.15
1550 3636 1.068474 GTGTTCGCTCAACGCTGTAT 58.932 50.000 2.56 0.00 41.60 2.29
1564 3650 0.110056 CAACATCAGGCGCAGTGTTC 60.110 55.000 10.83 0.00 32.87 3.18
1637 3723 9.716531 GTATGAATATCCACTGATCAATCAAGA 57.283 33.333 0.00 0.00 36.18 3.02
1657 3743 4.495019 GCACGTTCAATTATGCCGTATGAA 60.495 41.667 0.00 0.00 33.85 2.57
1663 3749 2.542766 AAGCACGTTCAATTATGCCG 57.457 45.000 0.00 0.00 38.92 5.69
1904 3990 4.389374 GAGGAGAATTGTTGACAAGGTCA 58.611 43.478 2.77 0.00 41.09 4.02
1905 3991 3.753797 GGAGGAGAATTGTTGACAAGGTC 59.246 47.826 2.77 3.14 39.47 3.85
1906 3992 3.395941 AGGAGGAGAATTGTTGACAAGGT 59.604 43.478 2.77 0.00 39.47 3.50
1907 3993 4.026356 AGGAGGAGAATTGTTGACAAGG 57.974 45.455 2.77 0.00 39.47 3.61
1908 3994 6.396829 AAAAGGAGGAGAATTGTTGACAAG 57.603 37.500 2.77 0.00 39.47 3.16
1909 3995 8.359642 CAATAAAAGGAGGAGAATTGTTGACAA 58.640 33.333 0.00 0.00 40.51 3.18
2017 4106 7.425224 AGAATTATCACTAGGCAGTACTTGT 57.575 36.000 0.00 0.00 32.21 3.16
2090 4214 0.322975 TCAGCAGAGAGGAAAGTGCC 59.677 55.000 0.00 0.00 36.54 5.01
2119 4243 5.062934 TCGGTCGATTGTAATTAAGCACAAG 59.937 40.000 9.67 0.22 38.01 3.16
2141 4266 8.853345 CAAAATTTCAAGACAAGAATATGGTCG 58.147 33.333 0.00 0.00 36.68 4.79
2239 4373 2.012051 GCTATTGGTTGGTCCTGTCCG 61.012 57.143 0.00 0.00 37.07 4.79
2325 4459 3.968649 TGTTGCTTCTCAAATGTCAAGC 58.031 40.909 10.31 10.31 41.43 4.01
2405 4707 5.765576 TTTATACCTGGGAGTACAGCAAA 57.234 39.130 0.00 0.00 37.16 3.68
2535 4839 2.034878 TCTATGCCGATGCTGACTTCT 58.965 47.619 0.00 0.00 38.71 2.85
2703 5007 7.981789 ACGATTTCATGACAGTATACTTGACAT 59.018 33.333 1.56 8.22 0.00 3.06
2773 5079 2.725221 TAGGAACGGAGGGAGTACTC 57.275 55.000 14.87 14.87 36.76 2.59
2818 5124 9.582431 TCATTTTGCTCTGTATGTAGTACTTAC 57.418 33.333 15.93 15.93 34.27 2.34
2997 5304 0.105964 CCCCTCCGTCGAATATGCAA 59.894 55.000 0.00 0.00 0.00 4.08
3009 5318 0.473886 ATCCCATAGTTCCCCCTCCG 60.474 60.000 0.00 0.00 0.00 4.63
3476 6198 5.863397 GCTAGCTGCAAAAACATTGTGAATA 59.137 36.000 7.70 0.00 42.31 1.75
3600 6322 2.572290 ACTCCAAAGCACTACCAACAC 58.428 47.619 0.00 0.00 0.00 3.32
3683 6416 5.179368 TCTTTGATGACTTCTTTTACTGGCG 59.821 40.000 0.00 0.00 0.00 5.69
3815 6548 5.477984 GCTGGATAGCCATTGGAATGAATAA 59.522 40.000 6.95 0.00 44.91 1.40
3835 6568 4.320456 AGCACACCTCCACGCTGG 62.320 66.667 0.00 0.00 39.43 4.85
3889 6622 1.645034 CATCGACGATGGAAACAGCT 58.355 50.000 26.65 0.00 46.92 4.24
4077 6810 3.547413 CGGCATGCTGAATACAATGTCTG 60.547 47.826 22.55 0.00 0.00 3.51
4158 6891 8.863086 AGTGCAAATTGCCATCTTGTATAATAT 58.137 29.630 15.98 0.00 44.23 1.28
4185 6918 4.631131 TCGCCCTGTATGAATAATGTCAG 58.369 43.478 0.00 0.00 0.00 3.51
4369 7122 1.069022 GCAACGCATCTTTTCTCAGCA 60.069 47.619 0.00 0.00 0.00 4.41
4384 7137 0.748005 CCCCTGTAAGATGGGCAACG 60.748 60.000 0.00 0.00 42.03 4.10
4480 7243 5.840715 ACATTGCAACAACACAACATATGA 58.159 33.333 10.38 0.00 0.00 2.15
4969 11448 2.353109 GCAAGGTCCTTGGATGCTTTTC 60.353 50.000 28.96 8.69 41.31 2.29
5009 11503 6.325919 AGAGACTATGATCTTTCGTCCATC 57.674 41.667 0.00 0.00 0.00 3.51
5079 11573 2.208431 CGAGATGGGACTTCATCAAGC 58.792 52.381 7.46 0.00 44.30 4.01
5178 11672 1.448893 GGGAGTTCATTGCGGCGTA 60.449 57.895 9.37 0.00 0.00 4.42
5205 12745 4.120331 GGGCTGTGTGGCGCATTC 62.120 66.667 10.83 0.00 43.28 2.67
5208 12748 3.899981 CTTAGGGCTGTGTGGCGCA 62.900 63.158 10.83 0.00 45.65 6.09
5302 13497 4.009675 TGCCAGCTATAGTTCAAGTTTGG 58.990 43.478 0.84 0.00 0.00 3.28
5432 13627 4.451900 GAGTGGTGGAATGTTCGGAATAT 58.548 43.478 0.00 0.00 0.00 1.28
5443 13638 2.044793 TTCTCTGGGAGTGGTGGAAT 57.955 50.000 0.00 0.00 0.00 3.01
5474 13669 0.463833 GCACCCGATACTTTCCCCTG 60.464 60.000 0.00 0.00 0.00 4.45
5475 13670 0.620700 AGCACCCGATACTTTCCCCT 60.621 55.000 0.00 0.00 0.00 4.79
5477 13672 0.179054 GGAGCACCCGATACTTTCCC 60.179 60.000 0.00 0.00 0.00 3.97
5478 13673 3.381370 GGAGCACCCGATACTTTCC 57.619 57.895 0.00 0.00 0.00 3.13
5489 13684 2.045536 CTCAAGGCTGGGAGCACC 60.046 66.667 3.81 0.00 44.75 5.01
5491 13686 1.229496 TACCTCAAGGCTGGGAGCA 60.229 57.895 10.16 0.00 44.75 4.26
5492 13687 1.222113 GTACCTCAAGGCTGGGAGC 59.778 63.158 10.16 0.00 41.46 4.70
5493 13688 0.827368 GAGTACCTCAAGGCTGGGAG 59.173 60.000 8.97 8.97 39.32 4.30
5494 13689 0.617820 GGAGTACCTCAAGGCTGGGA 60.618 60.000 8.15 0.00 39.32 4.37
5496 13691 1.908483 GGGAGTACCTCAAGGCTGG 59.092 63.158 0.00 0.00 39.32 4.85
5497 13692 1.517832 CGGGAGTACCTCAAGGCTG 59.482 63.158 0.00 0.00 39.32 4.85
5498 13693 1.686110 CCGGGAGTACCTCAAGGCT 60.686 63.158 0.00 0.00 39.32 4.58
5499 13694 1.988406 ACCGGGAGTACCTCAAGGC 60.988 63.158 6.32 0.00 39.32 4.35
5500 13695 1.898154 CACCGGGAGTACCTCAAGG 59.102 63.158 6.32 0.00 42.17 3.61
5502 13697 1.229082 AGCACCGGGAGTACCTCAA 60.229 57.895 6.32 0.00 36.97 3.02
5504 13699 2.424733 GGAGCACCGGGAGTACCTC 61.425 68.421 6.32 1.58 36.97 3.85
5505 13700 2.363925 GGAGCACCGGGAGTACCT 60.364 66.667 6.32 0.00 36.97 3.08
5506 13701 1.623542 ATTGGAGCACCGGGAGTACC 61.624 60.000 6.32 3.04 39.42 3.34
5507 13702 0.462047 CATTGGAGCACCGGGAGTAC 60.462 60.000 6.32 0.00 39.42 2.73
5508 13703 0.907704 ACATTGGAGCACCGGGAGTA 60.908 55.000 6.32 0.00 39.42 2.59
5509 13704 1.779061 AACATTGGAGCACCGGGAGT 61.779 55.000 6.32 0.00 39.42 3.85
5510 13705 0.251916 TAACATTGGAGCACCGGGAG 59.748 55.000 6.32 0.00 39.42 4.30
5511 13706 0.916086 ATAACATTGGAGCACCGGGA 59.084 50.000 6.32 0.00 39.42 5.14
5512 13707 2.631160 TATAACATTGGAGCACCGGG 57.369 50.000 6.32 0.00 39.42 5.73
5513 13708 4.974368 TTTTATAACATTGGAGCACCGG 57.026 40.909 0.00 0.00 39.42 5.28
5514 13709 5.704888 TGTTTTTATAACATTGGAGCACCG 58.295 37.500 0.00 0.00 39.42 4.94
5515 13710 8.546597 AAATGTTTTTATAACATTGGAGCACC 57.453 30.769 12.94 0.00 46.62 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.