Multiple sequence alignment - TraesCS7B01G196800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G196800 chr7B 100.000 9656 0 0 1 9656 339207736 339217391 0.000000e+00 17832.0
1 TraesCS7B01G196800 chr7B 96.386 249 8 1 1677 1924 157165082 157164834 9.030000e-110 409.0
2 TraesCS7B01G196800 chr7B 95.181 249 10 2 1677 1924 634367334 634367087 9.090000e-105 392.0
3 TraesCS7B01G196800 chr7B 87.387 111 9 4 6811 6917 71616640 71616749 1.320000e-23 122.0
4 TraesCS7B01G196800 chr7B 86.087 115 11 4 6808 6918 687407427 687407540 1.700000e-22 119.0
5 TraesCS7B01G196800 chr7B 98.039 51 1 0 9605 9655 560524063 560524013 1.340000e-13 89.8
6 TraesCS7B01G196800 chr7B 94.737 57 1 2 9599 9655 730166426 730166480 4.800000e-13 87.9
7 TraesCS7B01G196800 chr7A 95.276 4276 147 22 5028 9285 335988200 335983962 0.000000e+00 6726.0
8 TraesCS7B01G196800 chr7A 97.145 1296 28 3 1913 3205 335991942 335990653 0.000000e+00 2180.0
9 TraesCS7B01G196800 chr7A 97.335 1276 28 4 406 1679 335993211 335991940 0.000000e+00 2163.0
10 TraesCS7B01G196800 chr7A 94.803 1193 46 5 3853 5029 335990646 335989454 0.000000e+00 1845.0
11 TraesCS7B01G196800 chr7A 89.974 389 34 4 1 384 335993585 335993197 1.870000e-136 497.0
12 TraesCS7B01G196800 chr7A 94.545 55 1 2 9602 9656 139106750 139106698 6.210000e-12 84.2
13 TraesCS7B01G196800 chr7D 94.970 3380 144 15 5030 8397 295318699 295322064 0.000000e+00 5276.0
14 TraesCS7B01G196800 chr7D 94.746 1713 75 1 3332 5029 295315714 295317426 0.000000e+00 2651.0
15 TraesCS7B01G196800 chr7D 96.957 1413 36 5 1920 3328 295312575 295313984 0.000000e+00 2364.0
16 TraesCS7B01G196800 chr7D 97.350 1283 17 6 407 1674 295311300 295312580 0.000000e+00 2165.0
17 TraesCS7B01G196800 chr7D 96.151 1247 34 7 8364 9600 295322144 295323386 0.000000e+00 2025.0
18 TraesCS7B01G196800 chr7D 93.182 88 3 2 6833 6918 237412663 237412577 1.020000e-24 126.0
19 TraesCS7B01G196800 chr7D 94.643 56 0 3 9600 9655 319922268 319922320 6.210000e-12 84.2
20 TraesCS7B01G196800 chr7D 94.340 53 0 3 9602 9654 285679810 285679761 2.890000e-10 78.7
21 TraesCS7B01G196800 chr6A 85.484 1674 221 9 3263 4915 598181426 598183098 0.000000e+00 1725.0
22 TraesCS7B01G196800 chr6A 86.859 761 97 2 5027 5784 598184550 598185310 0.000000e+00 848.0
23 TraesCS7B01G196800 chr6A 89.423 208 20 2 6920 7125 3698532 3698325 2.670000e-65 261.0
24 TraesCS7B01G196800 chr6A 94.595 37 1 1 9462 9498 450311420 450311455 1.000000e-03 56.5
25 TraesCS7B01G196800 chr2B 85.236 1673 221 11 3263 4915 358763418 358765084 0.000000e+00 1698.0
26 TraesCS7B01G196800 chr2B 86.733 799 105 1 5027 5824 358766330 358767128 0.000000e+00 887.0
27 TraesCS7B01G196800 chr2B 96.000 250 8 2 1677 1924 543016003 543015754 1.170000e-108 405.0
28 TraesCS7B01G196800 chr2B 96.653 239 7 1 1677 1914 60981222 60980984 7.030000e-106 396.0
29 TraesCS7B01G196800 chr2B 92.553 94 3 3 6833 6923 603410366 603410458 2.190000e-26 132.0
30 TraesCS7B01G196800 chr2B 96.250 80 1 1 6840 6917 603410175 603410254 7.870000e-26 130.0
31 TraesCS7B01G196800 chr5A 85.033 1677 222 18 3263 4915 331750830 331752501 0.000000e+00 1679.0
32 TraesCS7B01G196800 chr5A 82.940 1653 260 11 3255 4890 548663792 548662145 0.000000e+00 1471.0
33 TraesCS7B01G196800 chr5A 79.712 1804 321 35 5028 6807 548660796 548659014 0.000000e+00 1262.0
34 TraesCS7B01G196800 chr5A 79.415 1812 331 28 3041 4824 106064840 106066637 0.000000e+00 1242.0
35 TraesCS7B01G196800 chr5A 80.047 1699 288 36 5028 6695 328832220 328833898 0.000000e+00 1212.0
36 TraesCS7B01G196800 chr5A 87.484 759 94 1 5027 5784 331753781 331754539 0.000000e+00 874.0
37 TraesCS7B01G196800 chr5A 83.898 826 114 9 3255 4064 328820544 328821366 0.000000e+00 771.0
38 TraesCS7B01G196800 chr5A 89.806 206 17 4 6932 7134 547356027 547355823 2.670000e-65 261.0
39 TraesCS7B01G196800 chr1A 84.360 1688 240 11 3252 4918 30259623 30261307 0.000000e+00 1633.0
40 TraesCS7B01G196800 chr1A 81.091 1851 302 33 5029 6844 30262619 30264456 0.000000e+00 1435.0
41 TraesCS7B01G196800 chr1A 96.364 55 0 2 9602 9656 239894841 239894893 1.340000e-13 89.8
42 TraesCS7B01G196800 chr1A 94.545 55 0 3 9602 9656 227264264 227264315 2.240000e-11 82.4
43 TraesCS7B01G196800 chr1A 92.105 38 3 0 9461 9498 392463127 392463164 5.000000e-03 54.7
44 TraesCS7B01G196800 chr4A 84.292 1687 243 9 3252 4918 637700698 637699014 0.000000e+00 1628.0
45 TraesCS7B01G196800 chr4A 81.297 1850 296 32 5028 6847 637697698 637695869 0.000000e+00 1454.0
46 TraesCS7B01G196800 chr4A 79.842 759 147 6 6092 6847 497817729 497818484 5.100000e-152 549.0
47 TraesCS7B01G196800 chr4A 90.594 202 17 2 6934 7133 3883524 3883725 5.750000e-67 267.0
48 TraesCS7B01G196800 chr2D 82.232 1649 270 14 3264 4893 80231574 80233218 0.000000e+00 1400.0
49 TraesCS7B01G196800 chr2D 82.896 877 128 16 5028 5895 623443670 623444533 0.000000e+00 769.0
50 TraesCS7B01G196800 chr2D 80.574 767 139 10 6091 6852 598810861 598811622 5.030000e-162 582.0
51 TraesCS7B01G196800 chr2D 94.595 37 1 1 9462 9498 63417291 63417256 1.000000e-03 56.5
52 TraesCS7B01G196800 chrUn 80.000 1655 290 29 3052 4678 266836514 266838155 0.000000e+00 1184.0
53 TraesCS7B01G196800 chrUn 89.423 208 20 2 6920 7125 231619326 231619119 2.670000e-65 261.0
54 TraesCS7B01G196800 chr1B 81.332 916 157 11 3041 3949 647663104 647662196 0.000000e+00 732.0
55 TraesCS7B01G196800 chr1B 77.361 720 135 19 6137 6848 647654330 647653631 1.510000e-107 401.0
56 TraesCS7B01G196800 chr5B 81.869 717 120 9 6137 6848 37785940 37785229 6.460000e-166 595.0
57 TraesCS7B01G196800 chr5B 80.403 745 140 6 6107 6848 18342745 18343486 6.550000e-156 562.0
58 TraesCS7B01G196800 chr5B 78.145 787 139 26 6073 6848 461832874 461832110 4.080000e-128 470.0
59 TraesCS7B01G196800 chr5B 96.748 246 7 1 1677 1921 682654144 682654389 9.030000e-110 409.0
60 TraesCS7B01G196800 chr5B 96.356 247 7 1 1677 1921 516403922 516404168 1.170000e-108 405.0
61 TraesCS7B01G196800 chr3A 80.672 714 132 6 6137 6847 150000794 150000084 5.100000e-152 549.0
62 TraesCS7B01G196800 chr3A 90.500 200 18 1 6938 7136 698214650 698214451 7.440000e-66 263.0
63 TraesCS7B01G196800 chr3A 93.443 61 3 1 9596 9656 490620339 490620280 1.340000e-13 89.8
64 TraesCS7B01G196800 chr3A 100.000 47 0 0 9610 9656 683525788 683525742 4.800000e-13 87.9
65 TraesCS7B01G196800 chr3B 96.748 246 7 1 1677 1921 132250796 132251041 9.030000e-110 409.0
66 TraesCS7B01G196800 chr3B 94.253 87 2 2 6833 6917 817426256 817426341 7.870000e-26 130.0
67 TraesCS7B01G196800 chr6B 97.458 236 6 0 1679 1914 606006464 606006699 4.200000e-108 403.0
68 TraesCS7B01G196800 chr6B 95.528 246 10 1 1677 1921 524671186 524671431 9.090000e-105 392.0
69 TraesCS7B01G196800 chr6B 90.640 203 18 1 6932 7133 305729060 305729262 1.600000e-67 268.0
70 TraesCS7B01G196800 chr6B 93.548 62 2 2 9595 9655 267789023 267788963 3.710000e-14 91.6
71 TraesCS7B01G196800 chr6B 96.429 56 1 1 9601 9656 585805807 585805753 3.710000e-14 91.6
72 TraesCS7B01G196800 chr6B 100.000 46 0 0 9610 9655 394668480 394668435 1.730000e-12 86.1
73 TraesCS7B01G196800 chr6B 96.154 52 1 1 9605 9656 150380505 150380555 6.210000e-12 84.2
74 TraesCS7B01G196800 chr6B 94.595 37 1 1 9462 9498 332847672 332847707 1.000000e-03 56.5
75 TraesCS7B01G196800 chr4B 91.795 195 15 1 6940 7133 187444316 187444510 4.440000e-68 270.0
76 TraesCS7B01G196800 chr4B 91.489 94 4 3 6833 6923 187444328 187444236 1.020000e-24 126.0
77 TraesCS7B01G196800 chr4B 93.478 46 0 1 9610 9655 586025494 586025536 2.250000e-06 65.8
78 TraesCS7B01G196800 chr4B 94.595 37 1 1 9462 9498 155031338 155031373 1.000000e-03 56.5
79 TraesCS7B01G196800 chr5D 78.896 308 53 9 9233 9533 23283881 23283579 2.130000e-46 198.0
80 TraesCS7B01G196800 chr5D 95.833 48 2 0 9607 9654 77030281 77030328 2.890000e-10 78.7
81 TraesCS7B01G196800 chr1D 94.643 56 1 2 9601 9656 206839130 206839077 1.730000e-12 86.1
82 TraesCS7B01G196800 chr3D 89.394 66 3 4 9589 9654 584933822 584933883 8.040000e-11 80.5
83 TraesCS7B01G196800 chr3D 95.918 49 0 2 9600 9648 105460484 105460530 2.890000e-10 78.7
84 TraesCS7B01G196800 chr3D 94.595 37 1 1 9462 9498 130800962 130800927 1.000000e-03 56.5
85 TraesCS7B01G196800 chr3D 100.000 29 0 0 9470 9498 355033342 355033370 5.000000e-03 54.7
86 TraesCS7B01G196800 chr4D 97.297 37 0 1 9462 9498 160667068 160667103 2.910000e-05 62.1
87 TraesCS7B01G196800 chr4D 94.595 37 1 1 9462 9498 144209075 144209110 1.000000e-03 56.5
88 TraesCS7B01G196800 chr4D 94.595 37 1 1 9462 9498 236299991 236299956 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G196800 chr7B 339207736 339217391 9655 False 17832.0 17832 100.0000 1 9656 1 chr7B.!!$F2 9655
1 TraesCS7B01G196800 chr7A 335983962 335993585 9623 True 2682.2 6726 94.9066 1 9285 5 chr7A.!!$R2 9284
2 TraesCS7B01G196800 chr7D 295311300 295323386 12086 False 2896.2 5276 96.0348 407 9600 5 chr7D.!!$F2 9193
3 TraesCS7B01G196800 chr6A 598181426 598185310 3884 False 1286.5 1725 86.1715 3263 5784 2 chr6A.!!$F2 2521
4 TraesCS7B01G196800 chr2B 358763418 358767128 3710 False 1292.5 1698 85.9845 3263 5824 2 chr2B.!!$F1 2561
5 TraesCS7B01G196800 chr5A 548659014 548663792 4778 True 1366.5 1471 81.3260 3255 6807 2 chr5A.!!$R2 3552
6 TraesCS7B01G196800 chr5A 331750830 331754539 3709 False 1276.5 1679 86.2585 3263 5784 2 chr5A.!!$F4 2521
7 TraesCS7B01G196800 chr5A 106064840 106066637 1797 False 1242.0 1242 79.4150 3041 4824 1 chr5A.!!$F1 1783
8 TraesCS7B01G196800 chr5A 328832220 328833898 1678 False 1212.0 1212 80.0470 5028 6695 1 chr5A.!!$F3 1667
9 TraesCS7B01G196800 chr5A 328820544 328821366 822 False 771.0 771 83.8980 3255 4064 1 chr5A.!!$F2 809
10 TraesCS7B01G196800 chr1A 30259623 30264456 4833 False 1534.0 1633 82.7255 3252 6844 2 chr1A.!!$F4 3592
11 TraesCS7B01G196800 chr4A 637695869 637700698 4829 True 1541.0 1628 82.7945 3252 6847 2 chr4A.!!$R1 3595
12 TraesCS7B01G196800 chr4A 497817729 497818484 755 False 549.0 549 79.8420 6092 6847 1 chr4A.!!$F2 755
13 TraesCS7B01G196800 chr2D 80231574 80233218 1644 False 1400.0 1400 82.2320 3264 4893 1 chr2D.!!$F1 1629
14 TraesCS7B01G196800 chr2D 623443670 623444533 863 False 769.0 769 82.8960 5028 5895 1 chr2D.!!$F3 867
15 TraesCS7B01G196800 chr2D 598810861 598811622 761 False 582.0 582 80.5740 6091 6852 1 chr2D.!!$F2 761
16 TraesCS7B01G196800 chrUn 266836514 266838155 1641 False 1184.0 1184 80.0000 3052 4678 1 chrUn.!!$F1 1626
17 TraesCS7B01G196800 chr1B 647662196 647663104 908 True 732.0 732 81.3320 3041 3949 1 chr1B.!!$R2 908
18 TraesCS7B01G196800 chr1B 647653631 647654330 699 True 401.0 401 77.3610 6137 6848 1 chr1B.!!$R1 711
19 TraesCS7B01G196800 chr5B 37785229 37785940 711 True 595.0 595 81.8690 6137 6848 1 chr5B.!!$R1 711
20 TraesCS7B01G196800 chr5B 18342745 18343486 741 False 562.0 562 80.4030 6107 6848 1 chr5B.!!$F1 741
21 TraesCS7B01G196800 chr5B 461832110 461832874 764 True 470.0 470 78.1450 6073 6848 1 chr5B.!!$R2 775
22 TraesCS7B01G196800 chr3A 150000084 150000794 710 True 549.0 549 80.6720 6137 6847 1 chr3A.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 224 0.107831 CCCAGGAACGGACACTCAAA 59.892 55.000 0.00 0.0 0.00 2.69 F
387 392 0.603065 GGGATTGCGCTCAGGTTTTT 59.397 50.000 9.73 0.0 0.00 1.94 F
538 543 1.250840 GCAAATCAAAGCCCGACCCT 61.251 55.000 0.00 0.0 0.00 4.34 F
1906 1927 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.0 38.63 4.69 F
3063 3088 1.148310 AAACGTGATGGAAGCGTCTG 58.852 50.000 0.00 0.0 37.92 3.51 F
3653 5415 1.755959 TGGCATGTTTCTTTGCACACT 59.244 42.857 0.00 0.0 40.66 3.55 F
4380 6163 1.446907 AAAGATCTGTCAAGCCTGCG 58.553 50.000 0.00 0.0 0.00 5.18 F
5837 9118 0.109723 GTGTTGTTGTAGGAGGGGCA 59.890 55.000 0.00 0.0 0.00 5.36 F
6745 10136 0.034337 GGTGTTGTAGTTGAGGCCGA 59.966 55.000 0.00 0.0 0.00 5.54 F
7615 11013 2.169832 TCGTTCTTTCCTGCCTTCTG 57.830 50.000 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1917 0.033699 GGTACTACCTCCGTCCTGGT 60.034 60.000 0.00 0.0 39.52 4.00 R
1897 1918 2.804549 GGTACTACCTCCGTCCTGG 58.195 63.158 0.00 0.0 34.73 4.45 R
2433 2454 1.727880 CATGTCAAAATTGCAAGGGCG 59.272 47.619 4.94 0.0 45.35 6.13 R
3129 3156 1.128809 TTGCCAACCGAACCCTCCTA 61.129 55.000 0.00 0.0 0.00 2.94 R
4362 6145 0.322975 ACGCAGGCTTGACAGATCTT 59.677 50.000 0.00 0.0 0.00 2.40 R
4922 6710 1.590147 CCGCTGGTTCTTCCGTAGT 59.410 57.895 0.00 0.0 39.52 2.73 R
5977 9348 1.022982 GGCGGCTACAACAACCCTAC 61.023 60.000 0.00 0.0 0.00 3.18 R
7812 11212 1.357079 ACTCGTACAGGTAGGGTTCCT 59.643 52.381 0.00 0.0 37.71 3.36 R
8040 11440 0.685458 ATGAATGCCAACCTGCCTCC 60.685 55.000 0.00 0.0 0.00 4.30 R
9403 12928 0.684535 TGGAGATGCCGTTGAGTTCA 59.315 50.000 0.00 0.0 40.66 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.115152 CCAGCTTTCCCTTCCCCTTT 59.885 55.000 0.00 0.00 0.00 3.11
43 44 2.074922 TTCCCTTCCCCTTTGATCCT 57.925 50.000 0.00 0.00 0.00 3.24
45 46 0.259938 CCCTTCCCCTTTGATCCTGG 59.740 60.000 0.00 0.00 0.00 4.45
48 49 1.918957 CTTCCCCTTTGATCCTGGAGT 59.081 52.381 1.52 0.00 0.00 3.85
94 95 7.186804 CCATAAGCTTGTCGAACGAAAAATAT 58.813 34.615 9.86 0.00 0.00 1.28
96 97 9.864034 CATAAGCTTGTCGAACGAAAAATATAT 57.136 29.630 9.86 0.00 0.00 0.86
110 112 5.340439 AAAATATATCGATCTCCCCGGTC 57.660 43.478 0.00 0.00 0.00 4.79
140 142 4.120589 CAGCGGAGATAAAGAACCCTAAC 58.879 47.826 0.00 0.00 0.00 2.34
142 144 3.743584 GCGGAGATAAAGAACCCTAACCC 60.744 52.174 0.00 0.00 0.00 4.11
159 161 4.715130 CCCCCGGGTGAGGAGACA 62.715 72.222 21.85 0.00 0.00 3.41
211 213 2.511600 CGTGATCGGCCCAGGAAC 60.512 66.667 0.00 0.00 0.00 3.62
215 217 3.735037 GATCGGCCCAGGAACGGAC 62.735 68.421 0.00 0.00 0.00 4.79
222 224 0.107831 CCCAGGAACGGACACTCAAA 59.892 55.000 0.00 0.00 0.00 2.69
226 228 1.210967 AGGAACGGACACTCAAACCAA 59.789 47.619 0.00 0.00 0.00 3.67
229 231 0.812412 ACGGACACTCAAACCAACGG 60.812 55.000 0.00 0.00 0.00 4.44
261 263 2.202892 GGGTCTCAACGATCGCCC 60.203 66.667 16.60 12.79 0.00 6.13
262 264 2.582498 GGTCTCAACGATCGCCCG 60.582 66.667 16.60 3.65 0.00 6.13
290 292 3.212685 CGAGAGGAACGATAACCCTAGT 58.787 50.000 0.00 0.00 0.00 2.57
292 294 3.952967 GAGAGGAACGATAACCCTAGTGT 59.047 47.826 0.00 0.00 0.00 3.55
293 295 5.121380 AGAGGAACGATAACCCTAGTGTA 57.879 43.478 0.00 0.00 0.00 2.90
310 312 4.694339 AGTGTAGGGAAAAGATATCACGC 58.306 43.478 5.32 0.00 0.00 5.34
320 325 7.238571 GGAAAAGATATCACGCGAAAAAGTAA 58.761 34.615 15.93 0.00 0.00 2.24
337 342 2.564062 AGTAAGTGCGCTAGGGTTACAA 59.436 45.455 9.73 5.15 0.00 2.41
352 357 9.462606 CTAGGGTTACAAGGAAAGTCAATTTAT 57.537 33.333 0.00 0.00 0.00 1.40
358 363 6.795399 ACAAGGAAAGTCAATTTATATGGCG 58.205 36.000 0.00 0.00 0.00 5.69
373 378 4.814294 GCGGCTCGACACGGGATT 62.814 66.667 0.00 0.00 0.00 3.01
374 379 2.885644 CGGCTCGACACGGGATTG 60.886 66.667 0.00 0.00 0.00 2.67
375 380 3.195698 GGCTCGACACGGGATTGC 61.196 66.667 0.00 0.00 0.00 3.56
376 381 3.554692 GCTCGACACGGGATTGCG 61.555 66.667 0.00 0.00 0.00 4.85
377 382 3.554692 CTCGACACGGGATTGCGC 61.555 66.667 0.00 0.00 0.00 6.09
378 383 3.989698 CTCGACACGGGATTGCGCT 62.990 63.158 9.73 0.00 0.00 5.92
379 384 3.554692 CGACACGGGATTGCGCTC 61.555 66.667 9.73 0.00 0.00 5.03
380 385 2.434185 GACACGGGATTGCGCTCA 60.434 61.111 9.73 0.00 0.00 4.26
381 386 2.434884 ACACGGGATTGCGCTCAG 60.435 61.111 9.73 0.00 0.00 3.35
382 387 3.197790 CACGGGATTGCGCTCAGG 61.198 66.667 9.73 0.00 0.00 3.86
383 388 3.706373 ACGGGATTGCGCTCAGGT 61.706 61.111 9.73 0.00 0.00 4.00
384 389 2.436646 CGGGATTGCGCTCAGGTT 60.437 61.111 9.73 0.00 0.00 3.50
385 390 2.040544 CGGGATTGCGCTCAGGTTT 61.041 57.895 9.73 0.00 0.00 3.27
386 391 1.586154 CGGGATTGCGCTCAGGTTTT 61.586 55.000 9.73 0.00 0.00 2.43
387 392 0.603065 GGGATTGCGCTCAGGTTTTT 59.397 50.000 9.73 0.00 0.00 1.94
538 543 1.250840 GCAAATCAAAGCCCGACCCT 61.251 55.000 0.00 0.00 0.00 4.34
708 728 2.159435 GGAGCGCGTGTCCAAATTAATT 60.159 45.455 20.77 0.00 33.84 1.40
1308 1329 3.554960 CGGAGGATGACAAGTTTCAGACA 60.555 47.826 0.00 0.00 0.00 3.41
1413 1434 1.302949 GATAGGTTGGGGCAGCACA 59.697 57.895 0.00 0.00 0.00 4.57
1645 1666 9.958180 TTTTCTCATCATCTTTACTACCAATCA 57.042 29.630 0.00 0.00 0.00 2.57
1676 1697 5.701290 GCTTTCCAATGCGGTCTACTATTAT 59.299 40.000 0.00 0.00 35.57 1.28
1677 1698 6.872020 GCTTTCCAATGCGGTCTACTATTATA 59.128 38.462 0.00 0.00 35.57 0.98
1678 1699 7.148623 GCTTTCCAATGCGGTCTACTATTATAC 60.149 40.741 0.00 0.00 35.57 1.47
1679 1700 7.534723 TTCCAATGCGGTCTACTATTATACT 57.465 36.000 0.00 0.00 35.57 2.12
1680 1701 8.640063 TTCCAATGCGGTCTACTATTATACTA 57.360 34.615 0.00 0.00 35.57 1.82
1681 1702 8.048534 TCCAATGCGGTCTACTATTATACTAC 57.951 38.462 0.00 0.00 35.57 2.73
1682 1703 7.121759 TCCAATGCGGTCTACTATTATACTACC 59.878 40.741 0.00 0.00 35.57 3.18
1683 1704 7.122353 CCAATGCGGTCTACTATTATACTACCT 59.878 40.741 0.00 0.00 0.00 3.08
1684 1705 7.862512 ATGCGGTCTACTATTATACTACCTC 57.137 40.000 0.00 0.00 0.00 3.85
1685 1706 7.013823 TGCGGTCTACTATTATACTACCTCT 57.986 40.000 0.00 0.00 0.00 3.69
1686 1707 6.877855 TGCGGTCTACTATTATACTACCTCTG 59.122 42.308 0.00 0.00 0.00 3.35
1687 1708 6.878389 GCGGTCTACTATTATACTACCTCTGT 59.122 42.308 0.00 0.00 0.00 3.41
1688 1709 7.064490 GCGGTCTACTATTATACTACCTCTGTC 59.936 44.444 0.00 0.00 0.00 3.51
1689 1710 7.548780 CGGTCTACTATTATACTACCTCTGTCC 59.451 44.444 0.00 0.00 0.00 4.02
1690 1711 8.605065 GGTCTACTATTATACTACCTCTGTCCT 58.395 40.741 0.00 0.00 0.00 3.85
1691 1712 9.439500 GTCTACTATTATACTACCTCTGTCCTG 57.561 40.741 0.00 0.00 0.00 3.86
1692 1713 8.604184 TCTACTATTATACTACCTCTGTCCTGG 58.396 40.741 0.00 0.00 0.00 4.45
1693 1714 7.164233 ACTATTATACTACCTCTGTCCTGGT 57.836 40.000 0.00 0.00 40.12 4.00
1694 1715 7.593653 ACTATTATACTACCTCTGTCCTGGTT 58.406 38.462 0.00 0.00 37.74 3.67
1695 1716 8.066247 ACTATTATACTACCTCTGTCCTGGTTT 58.934 37.037 0.00 0.00 37.74 3.27
1696 1717 9.584008 CTATTATACTACCTCTGTCCTGGTTTA 57.416 37.037 0.00 0.00 37.74 2.01
1698 1719 8.849543 TTATACTACCTCTGTCCTGGTTTATT 57.150 34.615 0.00 0.00 37.74 1.40
1699 1720 9.940974 TTATACTACCTCTGTCCTGGTTTATTA 57.059 33.333 0.00 0.00 37.74 0.98
1700 1721 6.793505 ACTACCTCTGTCCTGGTTTATTAG 57.206 41.667 0.00 0.00 37.74 1.73
1701 1722 6.262207 ACTACCTCTGTCCTGGTTTATTAGT 58.738 40.000 0.00 0.00 37.74 2.24
1702 1723 5.678955 ACCTCTGTCCTGGTTTATTAGTC 57.321 43.478 0.00 0.00 31.62 2.59
1703 1724 4.470304 ACCTCTGTCCTGGTTTATTAGTCC 59.530 45.833 0.00 0.00 31.62 3.85
1704 1725 4.141688 CCTCTGTCCTGGTTTATTAGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
1705 1726 4.695606 TCTGTCCTGGTTTATTAGTCCCT 58.304 43.478 0.00 0.00 0.00 4.20
1706 1727 5.098663 TCTGTCCTGGTTTATTAGTCCCTT 58.901 41.667 0.00 0.00 0.00 3.95
1707 1728 5.550403 TCTGTCCTGGTTTATTAGTCCCTTT 59.450 40.000 0.00 0.00 0.00 3.11
1708 1729 6.731919 TCTGTCCTGGTTTATTAGTCCCTTTA 59.268 38.462 0.00 0.00 0.00 1.85
1709 1730 6.954232 TGTCCTGGTTTATTAGTCCCTTTAG 58.046 40.000 0.00 0.00 0.00 1.85
1710 1731 6.502863 TGTCCTGGTTTATTAGTCCCTTTAGT 59.497 38.462 0.00 0.00 0.00 2.24
1711 1732 7.679453 TGTCCTGGTTTATTAGTCCCTTTAGTA 59.321 37.037 0.00 0.00 0.00 1.82
1712 1733 8.712103 GTCCTGGTTTATTAGTCCCTTTAGTAT 58.288 37.037 0.00 0.00 0.00 2.12
1713 1734 9.287818 TCCTGGTTTATTAGTCCCTTTAGTATT 57.712 33.333 0.00 0.00 0.00 1.89
1714 1735 9.916360 CCTGGTTTATTAGTCCCTTTAGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
1720 1741 9.742144 TTATTAGTCCCTTTAGTATTTTGTGCA 57.258 29.630 0.00 0.00 0.00 4.57
1721 1742 8.644374 ATTAGTCCCTTTAGTATTTTGTGCAA 57.356 30.769 0.00 0.00 0.00 4.08
1722 1743 6.969993 AGTCCCTTTAGTATTTTGTGCAAA 57.030 33.333 0.00 0.00 0.00 3.68
1723 1744 7.354751 AGTCCCTTTAGTATTTTGTGCAAAA 57.645 32.000 11.77 11.77 43.48 2.44
1724 1745 7.207383 AGTCCCTTTAGTATTTTGTGCAAAAC 58.793 34.615 11.64 2.47 42.32 2.43
1725 1746 7.069455 AGTCCCTTTAGTATTTTGTGCAAAACT 59.931 33.333 11.64 9.08 42.32 2.66
1726 1747 7.709182 GTCCCTTTAGTATTTTGTGCAAAACTT 59.291 33.333 11.64 1.38 42.32 2.66
1727 1748 8.261522 TCCCTTTAGTATTTTGTGCAAAACTTT 58.738 29.630 11.64 0.75 42.32 2.66
1728 1749 8.334632 CCCTTTAGTATTTTGTGCAAAACTTTG 58.665 33.333 11.64 0.00 42.32 2.77
1729 1750 9.092876 CCTTTAGTATTTTGTGCAAAACTTTGA 57.907 29.630 11.64 0.00 42.32 2.69
1730 1751 9.900264 CTTTAGTATTTTGTGCAAAACTTTGAC 57.100 29.630 11.64 6.30 42.32 3.18
1731 1752 6.902224 AGTATTTTGTGCAAAACTTTGACC 57.098 33.333 11.64 0.00 42.32 4.02
1732 1753 6.639563 AGTATTTTGTGCAAAACTTTGACCT 58.360 32.000 11.64 0.00 42.32 3.85
1733 1754 7.102993 AGTATTTTGTGCAAAACTTTGACCTT 58.897 30.769 11.64 0.00 42.32 3.50
1734 1755 8.254508 AGTATTTTGTGCAAAACTTTGACCTTA 58.745 29.630 11.64 0.00 42.32 2.69
1735 1756 6.959671 TTTTGTGCAAAACTTTGACCTTAG 57.040 33.333 6.37 0.00 40.55 2.18
1736 1757 5.906113 TTGTGCAAAACTTTGACCTTAGA 57.094 34.783 6.37 0.00 40.55 2.10
1737 1758 6.463995 TTGTGCAAAACTTTGACCTTAGAT 57.536 33.333 6.37 0.00 40.55 1.98
1738 1759 6.463995 TGTGCAAAACTTTGACCTTAGATT 57.536 33.333 6.37 0.00 40.55 2.40
1739 1760 6.872920 TGTGCAAAACTTTGACCTTAGATTT 58.127 32.000 6.37 0.00 40.55 2.17
1740 1761 8.001881 TGTGCAAAACTTTGACCTTAGATTTA 57.998 30.769 6.37 0.00 40.55 1.40
1741 1762 8.470805 TGTGCAAAACTTTGACCTTAGATTTAA 58.529 29.630 6.37 0.00 40.55 1.52
1742 1763 9.476202 GTGCAAAACTTTGACCTTAGATTTAAT 57.524 29.630 6.37 0.00 40.55 1.40
1802 1823 9.653287 ATCTCTCAAAACTATGTTCAAATACGA 57.347 29.630 0.00 0.00 0.00 3.43
1803 1824 9.483916 TCTCTCAAAACTATGTTCAAATACGAA 57.516 29.630 0.00 0.00 0.00 3.85
1806 1827 9.490663 CTCAAAACTATGTTCAAATACGAATCC 57.509 33.333 0.00 0.00 0.00 3.01
1807 1828 9.004717 TCAAAACTATGTTCAAATACGAATCCA 57.995 29.630 0.00 0.00 0.00 3.41
1808 1829 9.277565 CAAAACTATGTTCAAATACGAATCCAG 57.722 33.333 0.00 0.00 0.00 3.86
1809 1830 7.553881 AACTATGTTCAAATACGAATCCAGG 57.446 36.000 0.00 0.00 0.00 4.45
1810 1831 6.055588 ACTATGTTCAAATACGAATCCAGGG 58.944 40.000 0.00 0.00 0.00 4.45
1811 1832 4.561500 TGTTCAAATACGAATCCAGGGA 57.438 40.909 0.00 0.00 0.00 4.20
1812 1833 5.110814 TGTTCAAATACGAATCCAGGGAT 57.889 39.130 0.00 0.00 36.23 3.85
1813 1834 6.241882 TGTTCAAATACGAATCCAGGGATA 57.758 37.500 0.32 0.00 33.97 2.59
1814 1835 6.837312 TGTTCAAATACGAATCCAGGGATAT 58.163 36.000 0.32 0.00 33.97 1.63
1815 1836 7.969004 TGTTCAAATACGAATCCAGGGATATA 58.031 34.615 0.32 0.00 33.97 0.86
1816 1837 8.433599 TGTTCAAATACGAATCCAGGGATATAA 58.566 33.333 0.32 0.00 33.97 0.98
1817 1838 9.449719 GTTCAAATACGAATCCAGGGATATAAT 57.550 33.333 0.32 0.00 33.97 1.28
1823 1844 6.981722 ACGAATCCAGGGATATAATTTTTGC 58.018 36.000 0.32 0.00 33.97 3.68
1824 1845 6.777580 ACGAATCCAGGGATATAATTTTTGCT 59.222 34.615 0.32 0.00 33.97 3.91
1825 1846 7.942341 ACGAATCCAGGGATATAATTTTTGCTA 59.058 33.333 0.32 0.00 33.97 3.49
1826 1847 8.792633 CGAATCCAGGGATATAATTTTTGCTAA 58.207 33.333 0.32 0.00 33.97 3.09
1827 1848 9.914131 GAATCCAGGGATATAATTTTTGCTAAC 57.086 33.333 0.32 0.00 33.97 2.34
1828 1849 9.432982 AATCCAGGGATATAATTTTTGCTAACA 57.567 29.630 0.32 0.00 33.97 2.41
1829 1850 9.605951 ATCCAGGGATATAATTTTTGCTAACAT 57.394 29.630 0.00 0.00 32.36 2.71
1830 1851 8.859090 TCCAGGGATATAATTTTTGCTAACATG 58.141 33.333 0.00 0.00 0.00 3.21
1831 1852 7.599998 CCAGGGATATAATTTTTGCTAACATGC 59.400 37.037 0.00 0.00 0.00 4.06
1832 1853 8.143193 CAGGGATATAATTTTTGCTAACATGCA 58.857 33.333 0.00 0.00 41.65 3.96
1833 1854 8.873144 AGGGATATAATTTTTGCTAACATGCAT 58.127 29.630 0.00 0.00 42.96 3.96
1834 1855 9.492973 GGGATATAATTTTTGCTAACATGCATT 57.507 29.630 0.00 0.00 42.96 3.56
1872 1893 7.531857 TTAAATCTATGGTCAAAGTTTGGCA 57.468 32.000 21.09 8.42 36.88 4.92
1873 1894 5.391312 AATCTATGGTCAAAGTTTGGCAC 57.609 39.130 21.09 10.24 36.88 5.01
1874 1895 3.826524 TCTATGGTCAAAGTTTGGCACA 58.173 40.909 21.09 16.04 36.88 4.57
1889 1910 3.626930 TGGCACAAAATACTATGGGGAC 58.373 45.455 0.00 0.00 31.92 4.46
1890 1911 3.626222 TGGCACAAAATACTATGGGGACC 60.626 47.826 0.00 0.00 45.01 4.46
1904 1925 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
1905 1926 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
1906 1927 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
1907 1928 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
1908 1929 1.280998 ACCAATAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
1909 1930 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
1910 1931 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
1911 1932 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
1979 2000 5.344743 TTGCTCTAGATCCTTTTCGATGT 57.655 39.130 0.00 0.00 0.00 3.06
2333 2354 7.675170 GCAAGATTCCGTTTTGAAGTAGAGATC 60.675 40.741 0.00 0.00 0.00 2.75
2354 2375 4.094476 TCGGTAAATCTCCTCCACTTTCT 58.906 43.478 0.00 0.00 0.00 2.52
2433 2454 5.890334 TGCCAAGTTGTTGCTTATATTAGC 58.110 37.500 6.77 6.77 41.59 3.09
2501 2522 6.910536 AATGATAGTCAGGAACATCGTTTC 57.089 37.500 0.00 0.00 28.64 2.78
2779 2801 1.359848 CTCTTGATGGCGTGTACCAC 58.640 55.000 0.00 0.00 44.17 4.16
2838 2862 1.652124 GTCATCAAAATTGCTGCGCTG 59.348 47.619 9.73 10.04 0.00 5.18
2865 2889 5.924825 AGGCCTAGCGAATAACTAATTAACG 59.075 40.000 1.29 0.00 0.00 3.18
3063 3088 1.148310 AAACGTGATGGAAGCGTCTG 58.852 50.000 0.00 0.00 37.92 3.51
3653 5415 1.755959 TGGCATGTTTCTTTGCACACT 59.244 42.857 0.00 0.00 40.66 3.55
3762 5524 7.499232 AGAAAAAGCACTAACAAGTGTAGATGT 59.501 33.333 7.32 0.00 41.53 3.06
3869 5634 3.758023 TGGTGCATGAAGGTATTGACAAG 59.242 43.478 0.00 0.00 0.00 3.16
4029 5810 4.499037 GTTTACAACCCTGTAAGCCAAG 57.501 45.455 1.68 0.00 46.21 3.61
4127 5909 5.796424 ACCAAGAAAGAAATGCAAGTCAT 57.204 34.783 0.00 0.00 36.87 3.06
4175 5958 7.264221 TGAGTTCAAATCTGATAAGAGAGCTC 58.736 38.462 5.27 5.27 34.04 4.09
4177 5960 8.532186 AGTTCAAATCTGATAAGAGAGCTCTA 57.468 34.615 18.25 0.64 39.39 2.43
4330 6113 4.184629 ACTTTGCACTTAGGCGAGAATAG 58.815 43.478 0.00 0.00 36.28 1.73
4362 6145 4.522789 GGGAGCTTGTTTCAGTCCATAAAA 59.477 41.667 0.00 0.00 0.00 1.52
4380 6163 1.446907 AAAGATCTGTCAAGCCTGCG 58.553 50.000 0.00 0.00 0.00 5.18
4471 6254 2.086869 CCATGAAGGAACGCATTCTGT 58.913 47.619 0.00 0.00 41.22 3.41
4550 6333 5.523916 CGAATAGTAGCAGCCTTAACAACAT 59.476 40.000 0.00 0.00 0.00 2.71
4604 6387 5.048846 TCTCTGTTTGAAACCTTTAGCCT 57.951 39.130 5.50 0.00 0.00 4.58
4726 6509 7.148373 GGAACTAAATGCCACGTGTTATTTCTA 60.148 37.037 22.57 11.34 0.00 2.10
4737 6520 7.762615 CCACGTGTTATTTCTATGAAGAACCTA 59.237 37.037 15.65 0.00 41.48 3.08
4837 6622 7.848223 AGCAGCCAAACCATATTTAATTTTC 57.152 32.000 0.00 0.00 0.00 2.29
4922 6710 1.456196 CGCAGAAGATCCGAGCCCTA 61.456 60.000 0.00 0.00 0.00 3.53
4934 6722 1.065251 CGAGCCCTACTACGGAAGAAC 59.935 57.143 0.00 0.00 0.00 3.01
4943 6749 2.501223 TACGGAAGAACCAGCGGCAG 62.501 60.000 1.45 0.00 38.90 4.85
5039 8315 3.399181 CAGGGGAAGTGGGCGCTA 61.399 66.667 7.64 0.00 0.00 4.26
5117 8394 8.945195 AGAAATAGGATATGCCAATTGATGAA 57.055 30.769 7.12 0.00 40.02 2.57
5145 8422 3.676646 GCTCTTTGGCATGAATCACAAAC 59.323 43.478 0.00 0.00 0.00 2.93
5173 8450 4.821805 TCTGAATTTCTCTCACCAACAACC 59.178 41.667 0.00 0.00 0.00 3.77
5377 8655 5.248640 GTGACCTGATCCTTGATCAAAAGA 58.751 41.667 9.88 9.72 46.51 2.52
5422 8701 7.902920 AAGACATTGTTATCAAGGGCAATAT 57.097 32.000 6.79 0.00 44.64 1.28
5431 8710 4.149511 TCAAGGGCAATATGATGAACGA 57.850 40.909 0.00 0.00 0.00 3.85
5762 9042 8.410673 TTGGCAAGATGGTTAGTTATTTTACA 57.589 30.769 0.00 0.00 0.00 2.41
5837 9118 0.109723 GTGTTGTTGTAGGAGGGGCA 59.890 55.000 0.00 0.00 0.00 5.36
5870 9151 3.149648 GCCGCCGGAGTTACCCTA 61.150 66.667 7.68 0.00 34.64 3.53
5977 9348 1.599047 CCACCAGACTAGCCACCAG 59.401 63.158 0.00 0.00 0.00 4.00
6001 9390 1.894756 TTGTTGTAGCCGCCACCAC 60.895 57.895 0.00 0.00 0.00 4.16
6430 9821 3.161866 GAGAGGGAGACAACTGAGAACT 58.838 50.000 0.00 0.00 0.00 3.01
6660 10051 7.561356 TGATCTATATAGCCATACAAGCTAGCA 59.439 37.037 18.83 0.00 45.52 3.49
6695 10086 2.433145 CGCTTGAGCTCGCCAGAA 60.433 61.111 9.64 0.00 39.32 3.02
6745 10136 0.034337 GGTGTTGTAGTTGAGGCCGA 59.966 55.000 0.00 0.00 0.00 5.54
6931 10326 3.057969 TCAACAAGACGCTTCCATCAT 57.942 42.857 0.00 0.00 0.00 2.45
7079 10474 5.205056 GGGGGTGTTGAAATATATTGTCCA 58.795 41.667 0.00 0.00 0.00 4.02
7085 10480 7.721399 GGTGTTGAAATATATTGTCCATCTCCT 59.279 37.037 0.00 0.00 0.00 3.69
7126 10521 2.492012 GATGAGTTGGCTGGAGCATAG 58.508 52.381 0.20 0.00 44.36 2.23
7143 10538 4.002982 GCATAGATTCAACAGTGTCCACA 58.997 43.478 0.00 0.00 0.00 4.17
7167 10562 7.611467 ACATTTTCTGTGAGTGATAATGGCTTA 59.389 33.333 0.00 0.00 37.26 3.09
7169 10564 7.792374 TTTCTGTGAGTGATAATGGCTTATC 57.208 36.000 8.74 8.74 42.39 1.75
7170 10565 5.858381 TCTGTGAGTGATAATGGCTTATCC 58.142 41.667 11.57 6.03 41.69 2.59
7171 10566 4.973168 TGTGAGTGATAATGGCTTATCCC 58.027 43.478 11.57 3.89 41.69 3.85
7173 10568 3.330701 TGAGTGATAATGGCTTATCCCCC 59.669 47.826 11.57 0.00 41.69 5.40
7545 10942 8.258007 TGTTATTTCTCTCGGTGATGAAGTAAT 58.742 33.333 0.00 0.00 0.00 1.89
7549 10946 4.870426 TCTCTCGGTGATGAAGTAATTTGC 59.130 41.667 0.00 0.00 0.00 3.68
7594 10992 3.181510 ACCGAAGTGCGCATAAGATTTTC 60.182 43.478 15.91 8.38 39.11 2.29
7615 11013 2.169832 TCGTTCTTTCCTGCCTTCTG 57.830 50.000 0.00 0.00 0.00 3.02
7635 11035 7.707035 CCTTCTGTGAGACGTTTATAGCTTATT 59.293 37.037 0.00 0.00 0.00 1.40
7636 11036 8.997621 TTCTGTGAGACGTTTATAGCTTATTT 57.002 30.769 0.00 0.00 0.00 1.40
7787 11187 6.402222 CCTTAGAAGCTGATTAACACAGAGT 58.598 40.000 13.47 2.70 37.54 3.24
7812 11212 4.260985 TCTGAACTGCTGTGAGAAAAACA 58.739 39.130 0.00 0.00 0.00 2.83
8040 11440 4.126437 TGCAATATCACAGGTACCATTCG 58.874 43.478 15.94 1.72 0.00 3.34
8097 11497 2.976185 TGACCACTATGGACTGGAAACA 59.024 45.455 0.84 0.00 40.96 2.83
8208 11608 3.409026 AAGTCAAGCTACAAGGGACAG 57.591 47.619 0.00 0.00 0.00 3.51
8415 11930 5.646360 TGTTAAGCTCCAACATTTAGTAGCC 59.354 40.000 9.21 0.00 31.13 3.93
8519 12034 3.561143 ACAAGTACCAATGGCTCACAAA 58.439 40.909 0.00 0.00 0.00 2.83
8520 12035 3.317993 ACAAGTACCAATGGCTCACAAAC 59.682 43.478 0.00 0.00 0.00 2.93
8557 12072 1.068588 TGTTCGCTGGATTAGATCGGG 59.931 52.381 0.00 0.00 0.00 5.14
8577 12092 6.633856 TCGGGATACTTAGTTTAGTTTCCAC 58.366 40.000 12.95 4.61 43.79 4.02
8608 12123 5.411669 CAGGTGTACAAATACCTTCCAAGAC 59.588 44.000 0.00 0.00 44.26 3.01
8825 12348 5.261216 ACGGTTATTCATTCACCCTTCAAT 58.739 37.500 0.00 0.00 0.00 2.57
8827 12350 6.210584 ACGGTTATTCATTCACCCTTCAATTT 59.789 34.615 0.00 0.00 0.00 1.82
8945 12470 7.470289 AATTGCAAGTGTAATTTAACGCAAA 57.530 28.000 4.94 0.00 41.01 3.68
8962 12487 3.609175 CGCAAATCTTTGTGGTGGTGTAG 60.609 47.826 8.07 0.00 43.10 2.74
9107 12632 0.551396 GCAAATAGTAGGGGTGGCCT 59.449 55.000 3.32 0.00 0.00 5.19
9301 12826 9.025020 CAGCATCTATACATTATTTAGGCGTAG 57.975 37.037 0.00 0.00 0.00 3.51
9380 12905 4.335594 GGCTCATAACACACTGGGAAATAC 59.664 45.833 0.00 0.00 0.00 1.89
9403 12928 0.040646 TGGGACACATCCTAGTCGGT 59.959 55.000 0.00 0.00 45.46 4.69
9425 12950 0.320771 ACTCAACGGCATCTCCACAC 60.321 55.000 0.00 0.00 34.01 3.82
9466 12991 2.318908 TCTGGCCAAAATCAACAAGCT 58.681 42.857 7.01 0.00 0.00 3.74
9569 13094 5.422331 TCACCCATAAAACAACAACTCCAAA 59.578 36.000 0.00 0.00 0.00 3.28
9580 13105 5.163416 ACAACAACTCCAAATCCAAGAAAGG 60.163 40.000 0.00 0.00 0.00 3.11
9596 13121 2.636768 AAGGCATAAAAAGCAGCGAC 57.363 45.000 0.00 0.00 0.00 5.19
9600 13125 3.947834 AGGCATAAAAAGCAGCGACTATT 59.052 39.130 0.00 0.00 0.00 1.73
9601 13126 4.399303 AGGCATAAAAAGCAGCGACTATTT 59.601 37.500 0.00 0.00 0.00 1.40
9602 13127 5.102313 GGCATAAAAAGCAGCGACTATTTT 58.898 37.500 0.00 0.00 0.00 1.82
9603 13128 5.576774 GGCATAAAAAGCAGCGACTATTTTT 59.423 36.000 7.10 7.10 38.18 1.94
9622 13147 4.868450 TTTTCTTCTTCGAGAAAACGCA 57.132 36.364 8.30 0.00 45.66 5.24
9623 13148 4.868450 TTTCTTCTTCGAGAAAACGCAA 57.132 36.364 0.00 0.00 41.35 4.85
9624 13149 4.452890 TTCTTCTTCGAGAAAACGCAAG 57.547 40.909 0.00 0.00 37.25 4.01
9625 13150 3.713288 TCTTCTTCGAGAAAACGCAAGA 58.287 40.909 0.00 0.00 35.43 3.02
9626 13151 4.116961 TCTTCTTCGAGAAAACGCAAGAA 58.883 39.130 0.00 0.00 37.24 2.52
9627 13152 4.209288 TCTTCTTCGAGAAAACGCAAGAAG 59.791 41.667 21.49 21.49 45.15 2.85
9628 13153 3.713288 TCTTCGAGAAAACGCAAGAAGA 58.287 40.909 2.07 2.07 40.89 2.87
9629 13154 3.736252 TCTTCGAGAAAACGCAAGAAGAG 59.264 43.478 2.07 0.00 39.07 2.85
9630 13155 1.792949 TCGAGAAAACGCAAGAAGAGC 59.207 47.619 0.00 0.00 43.62 4.09
9631 13156 1.795286 CGAGAAAACGCAAGAAGAGCT 59.205 47.619 0.00 0.00 43.62 4.09
9632 13157 2.221981 CGAGAAAACGCAAGAAGAGCTT 59.778 45.455 0.00 0.00 43.62 3.74
9643 13168 5.763444 CAAGAAGAGCTTGCATTTCATTG 57.237 39.130 0.00 8.25 46.67 2.82
9644 13169 3.846360 AGAAGAGCTTGCATTTCATTGC 58.154 40.909 0.00 0.00 43.07 3.56
9645 13170 3.510360 AGAAGAGCTTGCATTTCATTGCT 59.490 39.130 0.00 0.00 43.18 3.91
9646 13171 3.955650 AGAGCTTGCATTTCATTGCTT 57.044 38.095 0.00 0.00 43.18 3.91
9647 13172 4.267349 AGAGCTTGCATTTCATTGCTTT 57.733 36.364 0.00 0.00 43.18 3.51
9648 13173 3.994392 AGAGCTTGCATTTCATTGCTTTG 59.006 39.130 0.00 0.00 43.18 2.77
9649 13174 3.071479 AGCTTGCATTTCATTGCTTTGG 58.929 40.909 0.00 0.00 43.18 3.28
9650 13175 3.068560 GCTTGCATTTCATTGCTTTGGA 58.931 40.909 0.00 0.00 43.18 3.53
9651 13176 3.499157 GCTTGCATTTCATTGCTTTGGAA 59.501 39.130 0.00 0.00 43.18 3.53
9652 13177 4.023878 GCTTGCATTTCATTGCTTTGGAAA 60.024 37.500 0.00 0.00 43.18 3.13
9653 13178 5.676532 TTGCATTTCATTGCTTTGGAAAG 57.323 34.783 0.00 0.00 43.18 2.62
9654 13179 4.958509 TGCATTTCATTGCTTTGGAAAGA 58.041 34.783 3.23 0.00 43.18 2.52
9655 13180 5.366460 TGCATTTCATTGCTTTGGAAAGAA 58.634 33.333 3.23 0.00 43.18 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.342496 GCATCATCGACTCCAGGATCA 59.658 52.381 0.00 0.00 0.00 2.92
45 46 0.033228 CCAGGGAGCATCATCGACTC 59.967 60.000 0.00 0.00 36.25 3.36
48 49 0.465705 GAACCAGGGAGCATCATCGA 59.534 55.000 0.00 0.00 36.25 3.59
76 77 8.691727 AGATCGATATATTTTTCGTTCGACAAG 58.308 33.333 0.00 0.00 38.29 3.16
94 95 1.339824 GCTAGACCGGGGAGATCGATA 60.340 57.143 6.32 0.00 0.00 2.92
96 97 1.228184 GCTAGACCGGGGAGATCGA 60.228 63.158 6.32 0.00 0.00 3.59
110 112 0.952280 TTATCTCCGCTGGTCGCTAG 59.048 55.000 0.00 0.00 36.73 3.42
123 125 4.434545 GGGGGTTAGGGTTCTTTATCTC 57.565 50.000 0.00 0.00 0.00 2.75
142 144 4.715130 TGTCTCCTCACCCGGGGG 62.715 72.222 27.92 24.30 42.03 5.40
146 148 1.185618 TGGTTCTGTCTCCTCACCCG 61.186 60.000 0.00 0.00 0.00 5.28
149 151 2.608261 CGTCTTGGTTCTGTCTCCTCAC 60.608 54.545 0.00 0.00 0.00 3.51
159 161 2.067197 CTTCCCCCGTCTTGGTTCT 58.933 57.895 0.00 0.00 35.15 3.01
208 210 1.004292 CGTTGGTTTGAGTGTCCGTTC 60.004 52.381 0.00 0.00 0.00 3.95
211 213 0.531090 TCCGTTGGTTTGAGTGTCCG 60.531 55.000 0.00 0.00 0.00 4.79
215 217 1.070134 TCTCCTCCGTTGGTTTGAGTG 59.930 52.381 0.00 0.00 0.00 3.51
222 224 0.977395 CTTCCTTCTCCTCCGTTGGT 59.023 55.000 0.00 0.00 0.00 3.67
226 228 0.966370 CCGTCTTCCTTCTCCTCCGT 60.966 60.000 0.00 0.00 0.00 4.69
229 231 0.818938 GACCCGTCTTCCTTCTCCTC 59.181 60.000 0.00 0.00 0.00 3.71
261 263 2.573689 GTTCCTCTCGTCGTCGCG 60.574 66.667 0.00 0.00 36.96 5.87
262 264 2.307137 ATCGTTCCTCTCGTCGTCGC 62.307 60.000 0.00 0.00 36.96 5.19
265 267 1.399791 GGTTATCGTTCCTCTCGTCGT 59.600 52.381 0.00 0.00 0.00 4.34
290 292 3.382227 TCGCGTGATATCTTTTCCCTACA 59.618 43.478 5.77 0.00 0.00 2.74
292 294 4.659111 TTCGCGTGATATCTTTTCCCTA 57.341 40.909 5.77 0.00 0.00 3.53
293 295 3.536956 TTCGCGTGATATCTTTTCCCT 57.463 42.857 5.77 0.00 0.00 4.20
297 299 7.744715 CACTTACTTTTTCGCGTGATATCTTTT 59.255 33.333 5.77 0.00 0.00 2.27
306 308 1.305482 CGCACTTACTTTTTCGCGTG 58.695 50.000 5.77 0.00 38.03 5.34
310 312 2.093783 CCCTAGCGCACTTACTTTTTCG 59.906 50.000 11.47 0.00 0.00 3.46
320 325 0.249398 CCTTGTAACCCTAGCGCACT 59.751 55.000 11.47 0.00 0.00 4.40
337 342 4.278419 GCCGCCATATAAATTGACTTTCCT 59.722 41.667 0.00 0.00 0.00 3.36
352 357 4.201679 CCGTGTCGAGCCGCCATA 62.202 66.667 0.00 0.00 0.00 2.74
358 363 3.195698 GCAATCCCGTGTCGAGCC 61.196 66.667 0.00 0.00 0.00 4.70
394 399 3.314913 TGAGCGCAATCTTGTCTCAAAAA 59.685 39.130 11.47 0.00 37.16 1.94
395 400 2.877786 TGAGCGCAATCTTGTCTCAAAA 59.122 40.909 11.47 0.00 37.16 2.44
396 401 2.481568 CTGAGCGCAATCTTGTCTCAAA 59.518 45.455 11.47 0.00 38.45 2.69
397 402 2.071540 CTGAGCGCAATCTTGTCTCAA 58.928 47.619 11.47 0.00 38.45 3.02
398 403 1.673923 CCTGAGCGCAATCTTGTCTCA 60.674 52.381 11.47 0.00 37.48 3.27
399 404 1.005340 CCTGAGCGCAATCTTGTCTC 58.995 55.000 11.47 0.00 33.59 3.36
400 405 0.322975 ACCTGAGCGCAATCTTGTCT 59.677 50.000 11.47 0.00 0.00 3.41
401 406 0.445436 CACCTGAGCGCAATCTTGTC 59.555 55.000 11.47 0.00 0.00 3.18
402 407 1.580845 GCACCTGAGCGCAATCTTGT 61.581 55.000 11.47 0.00 0.00 3.16
403 408 1.136147 GCACCTGAGCGCAATCTTG 59.864 57.895 11.47 1.57 0.00 3.02
404 409 1.002868 AGCACCTGAGCGCAATCTT 60.003 52.632 11.47 0.00 40.15 2.40
708 728 1.140452 GATGATGCTCTTGCTGGGAGA 59.860 52.381 5.58 0.00 40.48 3.71
914 935 1.025113 CCATGTGCTCACAGCCTCAG 61.025 60.000 8.74 0.00 45.48 3.35
1036 1057 0.609957 TCCTCTACGGCGAACCAGAA 60.610 55.000 16.62 0.00 34.57 3.02
1308 1329 1.222936 CTCGGCCTTGCTCTTCCAT 59.777 57.895 0.00 0.00 0.00 3.41
1413 1434 2.501128 CAGTCACCATCGCCGGAT 59.499 61.111 5.05 0.00 0.00 4.18
1645 1666 1.216178 GCATTGGAAAGCGGTGCAT 59.784 52.632 0.00 0.00 35.93 3.96
1676 1697 7.416731 ACTAATAAACCAGGACAGAGGTAGTA 58.583 38.462 0.00 0.00 37.07 1.82
1677 1698 6.262207 ACTAATAAACCAGGACAGAGGTAGT 58.738 40.000 0.00 0.00 37.07 2.73
1678 1699 6.183360 GGACTAATAAACCAGGACAGAGGTAG 60.183 46.154 0.00 0.00 37.07 3.18
1679 1700 5.659971 GGACTAATAAACCAGGACAGAGGTA 59.340 44.000 0.00 0.00 37.07 3.08
1680 1701 4.470304 GGACTAATAAACCAGGACAGAGGT 59.530 45.833 0.00 0.00 40.61 3.85
1681 1702 4.141688 GGGACTAATAAACCAGGACAGAGG 60.142 50.000 0.00 0.00 0.00 3.69
1682 1703 4.717280 AGGGACTAATAAACCAGGACAGAG 59.283 45.833 0.00 0.00 36.02 3.35
1683 1704 4.695606 AGGGACTAATAAACCAGGACAGA 58.304 43.478 0.00 0.00 36.02 3.41
1684 1705 5.437191 AAGGGACTAATAAACCAGGACAG 57.563 43.478 0.00 0.00 38.49 3.51
1685 1706 5.853572 AAAGGGACTAATAAACCAGGACA 57.146 39.130 0.00 0.00 38.49 4.02
1686 1707 6.955364 ACTAAAGGGACTAATAAACCAGGAC 58.045 40.000 0.00 0.00 38.49 3.85
1687 1708 8.865244 ATACTAAAGGGACTAATAAACCAGGA 57.135 34.615 0.00 0.00 38.49 3.86
1688 1709 9.916360 AAATACTAAAGGGACTAATAAACCAGG 57.084 33.333 0.00 0.00 38.49 4.45
1694 1715 9.742144 TGCACAAAATACTAAAGGGACTAATAA 57.258 29.630 0.00 0.00 38.49 1.40
1695 1716 9.742144 TTGCACAAAATACTAAAGGGACTAATA 57.258 29.630 0.00 0.00 38.49 0.98
1696 1717 8.644374 TTGCACAAAATACTAAAGGGACTAAT 57.356 30.769 0.00 0.00 38.49 1.73
1697 1718 8.466617 TTTGCACAAAATACTAAAGGGACTAA 57.533 30.769 0.00 0.00 38.49 2.24
1698 1719 8.354426 GTTTTGCACAAAATACTAAAGGGACTA 58.646 33.333 11.39 0.00 41.64 2.59
1699 1720 7.069455 AGTTTTGCACAAAATACTAAAGGGACT 59.931 33.333 11.39 0.00 41.64 3.85
1700 1721 7.207383 AGTTTTGCACAAAATACTAAAGGGAC 58.793 34.615 11.39 0.00 41.64 4.46
1701 1722 7.354751 AGTTTTGCACAAAATACTAAAGGGA 57.645 32.000 11.39 0.00 41.64 4.20
1702 1723 8.334632 CAAAGTTTTGCACAAAATACTAAAGGG 58.665 33.333 11.39 0.00 41.64 3.95
1703 1724 9.092876 TCAAAGTTTTGCACAAAATACTAAAGG 57.907 29.630 11.39 0.00 41.64 3.11
1704 1725 9.900264 GTCAAAGTTTTGCACAAAATACTAAAG 57.100 29.630 11.39 1.55 41.64 1.85
1705 1726 8.874816 GGTCAAAGTTTTGCACAAAATACTAAA 58.125 29.630 11.39 0.00 41.64 1.85
1706 1727 8.254508 AGGTCAAAGTTTTGCACAAAATACTAA 58.745 29.630 11.39 0.00 41.64 2.24
1707 1728 7.777095 AGGTCAAAGTTTTGCACAAAATACTA 58.223 30.769 11.39 0.00 41.64 1.82
1708 1729 6.639563 AGGTCAAAGTTTTGCACAAAATACT 58.360 32.000 11.39 3.61 41.64 2.12
1709 1730 6.902224 AGGTCAAAGTTTTGCACAAAATAC 57.098 33.333 11.39 1.39 41.64 1.89
1710 1731 8.470805 TCTAAGGTCAAAGTTTTGCACAAAATA 58.529 29.630 11.39 0.00 41.64 1.40
1711 1732 7.327214 TCTAAGGTCAAAGTTTTGCACAAAAT 58.673 30.769 11.39 0.00 41.64 1.82
1712 1733 6.692486 TCTAAGGTCAAAGTTTTGCACAAAA 58.308 32.000 4.47 4.47 38.05 2.44
1713 1734 6.274157 TCTAAGGTCAAAGTTTTGCACAAA 57.726 33.333 0.00 0.00 38.05 2.83
1714 1735 5.906113 TCTAAGGTCAAAGTTTTGCACAA 57.094 34.783 0.00 0.00 38.05 3.33
1715 1736 6.463995 AATCTAAGGTCAAAGTTTTGCACA 57.536 33.333 0.00 0.00 38.05 4.57
1716 1737 8.865590 TTAAATCTAAGGTCAAAGTTTTGCAC 57.134 30.769 0.00 0.62 38.05 4.57
1776 1797 9.653287 TCGTATTTGAACATAGTTTTGAGAGAT 57.347 29.630 0.00 0.00 0.00 2.75
1777 1798 9.483916 TTCGTATTTGAACATAGTTTTGAGAGA 57.516 29.630 0.00 0.00 0.00 3.10
1780 1801 9.490663 GGATTCGTATTTGAACATAGTTTTGAG 57.509 33.333 0.00 0.00 0.00 3.02
1781 1802 9.004717 TGGATTCGTATTTGAACATAGTTTTGA 57.995 29.630 0.00 0.00 0.00 2.69
1782 1803 9.277565 CTGGATTCGTATTTGAACATAGTTTTG 57.722 33.333 0.00 0.00 0.00 2.44
1783 1804 8.458843 CCTGGATTCGTATTTGAACATAGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
1784 1805 7.067008 CCCTGGATTCGTATTTGAACATAGTTT 59.933 37.037 0.00 0.00 0.00 2.66
1785 1806 6.542370 CCCTGGATTCGTATTTGAACATAGTT 59.458 38.462 0.00 0.00 0.00 2.24
1786 1807 6.055588 CCCTGGATTCGTATTTGAACATAGT 58.944 40.000 0.00 0.00 0.00 2.12
1787 1808 6.288294 TCCCTGGATTCGTATTTGAACATAG 58.712 40.000 0.00 0.00 0.00 2.23
1788 1809 6.241882 TCCCTGGATTCGTATTTGAACATA 57.758 37.500 0.00 0.00 0.00 2.29
1789 1810 5.110814 TCCCTGGATTCGTATTTGAACAT 57.889 39.130 0.00 0.00 0.00 2.71
1790 1811 4.561500 TCCCTGGATTCGTATTTGAACA 57.438 40.909 0.00 0.00 0.00 3.18
1791 1812 8.842358 TTATATCCCTGGATTCGTATTTGAAC 57.158 34.615 3.59 0.00 36.17 3.18
1797 1818 8.739972 GCAAAAATTATATCCCTGGATTCGTAT 58.260 33.333 3.59 0.00 36.17 3.06
1798 1819 7.942341 AGCAAAAATTATATCCCTGGATTCGTA 59.058 33.333 3.59 0.00 36.17 3.43
1799 1820 6.777580 AGCAAAAATTATATCCCTGGATTCGT 59.222 34.615 3.59 0.00 36.17 3.85
1800 1821 7.219484 AGCAAAAATTATATCCCTGGATTCG 57.781 36.000 3.59 0.00 36.17 3.34
1801 1822 9.914131 GTTAGCAAAAATTATATCCCTGGATTC 57.086 33.333 3.59 0.00 36.17 2.52
1802 1823 9.432982 TGTTAGCAAAAATTATATCCCTGGATT 57.567 29.630 3.59 0.00 36.17 3.01
1803 1824 9.605951 ATGTTAGCAAAAATTATATCCCTGGAT 57.394 29.630 3.79 3.79 38.54 3.41
1804 1825 8.859090 CATGTTAGCAAAAATTATATCCCTGGA 58.141 33.333 0.00 0.00 0.00 3.86
1805 1826 7.599998 GCATGTTAGCAAAAATTATATCCCTGG 59.400 37.037 0.00 0.00 0.00 4.45
1806 1827 8.143193 TGCATGTTAGCAAAAATTATATCCCTG 58.857 33.333 0.00 0.00 42.46 4.45
1807 1828 8.248904 TGCATGTTAGCAAAAATTATATCCCT 57.751 30.769 0.00 0.00 42.46 4.20
1846 1867 8.592809 TGCCAAACTTTGACCATAGATTTAATT 58.407 29.630 2.87 0.00 0.00 1.40
1847 1868 8.034804 GTGCCAAACTTTGACCATAGATTTAAT 58.965 33.333 2.87 0.00 0.00 1.40
1848 1869 7.014711 TGTGCCAAACTTTGACCATAGATTTAA 59.985 33.333 2.87 0.00 0.00 1.52
1849 1870 6.491745 TGTGCCAAACTTTGACCATAGATTTA 59.508 34.615 2.87 0.00 0.00 1.40
1850 1871 5.304101 TGTGCCAAACTTTGACCATAGATTT 59.696 36.000 2.87 0.00 0.00 2.17
1851 1872 4.832266 TGTGCCAAACTTTGACCATAGATT 59.168 37.500 2.87 0.00 0.00 2.40
1852 1873 4.406456 TGTGCCAAACTTTGACCATAGAT 58.594 39.130 2.87 0.00 0.00 1.98
1853 1874 3.826524 TGTGCCAAACTTTGACCATAGA 58.173 40.909 2.87 0.00 0.00 1.98
1854 1875 4.582701 TTGTGCCAAACTTTGACCATAG 57.417 40.909 2.87 0.00 0.00 2.23
1855 1876 5.344743 TTTTGTGCCAAACTTTGACCATA 57.655 34.783 2.87 0.00 0.00 2.74
1856 1877 3.902881 TTTGTGCCAAACTTTGACCAT 57.097 38.095 2.87 0.00 0.00 3.55
1857 1878 3.685139 TTTTGTGCCAAACTTTGACCA 57.315 38.095 2.87 0.00 0.00 4.02
1858 1879 5.356426 AGTATTTTGTGCCAAACTTTGACC 58.644 37.500 2.87 0.00 0.00 4.02
1859 1880 7.116233 CCATAGTATTTTGTGCCAAACTTTGAC 59.884 37.037 2.87 0.00 0.00 3.18
1860 1881 7.151308 CCATAGTATTTTGTGCCAAACTTTGA 58.849 34.615 2.87 0.00 0.00 2.69
1861 1882 6.368516 CCCATAGTATTTTGTGCCAAACTTTG 59.631 38.462 0.52 0.00 0.00 2.77
1862 1883 6.463360 CCCATAGTATTTTGTGCCAAACTTT 58.537 36.000 0.52 0.00 0.00 2.66
1863 1884 5.046663 CCCCATAGTATTTTGTGCCAAACTT 60.047 40.000 0.52 0.00 0.00 2.66
1864 1885 4.466015 CCCCATAGTATTTTGTGCCAAACT 59.534 41.667 0.52 0.00 0.00 2.66
1865 1886 4.464597 TCCCCATAGTATTTTGTGCCAAAC 59.535 41.667 0.52 0.00 0.00 2.93
1866 1887 4.464597 GTCCCCATAGTATTTTGTGCCAAA 59.535 41.667 0.00 0.00 0.00 3.28
1867 1888 4.020543 GTCCCCATAGTATTTTGTGCCAA 58.979 43.478 0.00 0.00 0.00 4.52
1868 1889 3.626222 GGTCCCCATAGTATTTTGTGCCA 60.626 47.826 0.00 0.00 0.00 4.92
1869 1890 2.956333 GGTCCCCATAGTATTTTGTGCC 59.044 50.000 0.00 0.00 0.00 5.01
1870 1891 3.626930 TGGTCCCCATAGTATTTTGTGC 58.373 45.455 0.00 0.00 0.00 4.57
1871 1892 7.889873 TTATTGGTCCCCATAGTATTTTGTG 57.110 36.000 0.00 0.00 31.53 3.33
1872 1893 7.343574 GGTTTATTGGTCCCCATAGTATTTTGT 59.656 37.037 0.00 0.00 31.53 2.83
1873 1894 7.343316 TGGTTTATTGGTCCCCATAGTATTTTG 59.657 37.037 0.00 0.00 31.53 2.44
1874 1895 7.423341 TGGTTTATTGGTCCCCATAGTATTTT 58.577 34.615 0.00 0.00 31.53 1.82
1875 1896 6.987557 TGGTTTATTGGTCCCCATAGTATTT 58.012 36.000 0.00 0.00 31.53 1.40
1876 1897 6.411554 CCTGGTTTATTGGTCCCCATAGTATT 60.412 42.308 0.00 0.00 31.53 1.89
1877 1898 5.074515 CCTGGTTTATTGGTCCCCATAGTAT 59.925 44.000 0.00 0.00 31.53 2.12
1878 1899 4.414182 CCTGGTTTATTGGTCCCCATAGTA 59.586 45.833 0.00 0.00 31.53 1.82
1879 1900 3.204382 CCTGGTTTATTGGTCCCCATAGT 59.796 47.826 0.00 0.00 31.53 2.12
1880 1901 3.461831 TCCTGGTTTATTGGTCCCCATAG 59.538 47.826 0.00 0.00 31.53 2.23
1881 1902 3.203487 GTCCTGGTTTATTGGTCCCCATA 59.797 47.826 0.00 0.00 31.53 2.74
1882 1903 2.024369 GTCCTGGTTTATTGGTCCCCAT 60.024 50.000 0.00 0.00 31.53 4.00
1883 1904 1.356398 GTCCTGGTTTATTGGTCCCCA 59.644 52.381 0.00 0.00 0.00 4.96
1884 1905 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
1885 1906 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
1886 1907 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
1887 1908 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
1888 1909 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
1889 1910 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
1890 1911 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
1891 1912 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
1892 1913 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
1893 1914 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
1894 1915 2.174360 GTACTACCTCCGTCCTGGTTT 58.826 52.381 0.00 0.00 39.52 3.27
1895 1916 1.618074 GGTACTACCTCCGTCCTGGTT 60.618 57.143 0.00 0.00 39.52 3.67
1896 1917 0.033699 GGTACTACCTCCGTCCTGGT 60.034 60.000 0.00 0.00 39.52 4.00
1897 1918 2.804549 GGTACTACCTCCGTCCTGG 58.195 63.158 0.00 0.00 34.73 4.45
1935 1956 6.613233 CAATGTTGCACGGTAATAAGGTTTA 58.387 36.000 0.00 0.00 0.00 2.01
1979 2000 5.030147 AGTTCCCCAACATCTGTATGACTA 58.970 41.667 0.00 0.00 36.54 2.59
2333 2354 4.081642 TCAGAAAGTGGAGGAGATTTACCG 60.082 45.833 0.00 0.00 0.00 4.02
2354 2375 3.095332 CTCTGACCAGAACTCCTCATCA 58.905 50.000 1.08 0.00 36.94 3.07
2433 2454 1.727880 CATGTCAAAATTGCAAGGGCG 59.272 47.619 4.94 0.00 45.35 6.13
2501 2522 2.073816 AGATAAATTTATCGGGCCGCG 58.926 47.619 25.34 0.00 43.30 6.46
2739 2761 9.046296 CAAGAGGAATGCTATACGAACTTAATT 57.954 33.333 0.00 0.00 0.00 1.40
2838 2862 8.706936 GTTAATTAGTTATTCGCTAGGCCTAAC 58.293 37.037 14.85 8.71 0.00 2.34
2865 2889 4.214758 ACAACATTAGTCTTAACCGCCAAC 59.785 41.667 0.00 0.00 0.00 3.77
2899 2923 6.672266 AACTTAGATCAGTTGACCTCTTCA 57.328 37.500 0.00 0.00 35.57 3.02
2908 2932 7.065563 CAGATCAGGGAAAACTTAGATCAGTTG 59.934 40.741 0.00 0.00 37.07 3.16
3084 3110 5.344884 TCGCTCGATCAATATAACACAACA 58.655 37.500 0.00 0.00 0.00 3.33
3123 3150 3.646637 CCAACCGAACCCTCCTATATCTT 59.353 47.826 0.00 0.00 0.00 2.40
3129 3156 1.128809 TTGCCAACCGAACCCTCCTA 61.129 55.000 0.00 0.00 0.00 2.94
3413 5170 7.773489 TTGATTATCATTTTGTGAGGGAACA 57.227 32.000 0.00 0.00 40.92 3.18
3653 5415 6.261435 TCTTTGGTCCTAACTTGATCTCCTA 58.739 40.000 0.00 0.00 0.00 2.94
3762 5524 4.274147 TGGGTTAACTTTCAGCAAGTCAA 58.726 39.130 5.42 0.00 45.77 3.18
3802 5567 5.909054 CGCAAAACGCATATTGAGATATGTT 59.091 36.000 7.89 0.00 44.56 2.71
3869 5634 9.801873 TGATATTTCCTTTGCAGTAAATAAAGC 57.198 29.630 8.14 0.00 31.71 3.51
4029 5810 1.876156 CCACTGACCTTTTGAGCAGAC 59.124 52.381 0.00 0.00 32.86 3.51
4088 5869 8.617290 TTTCTTGGTATTGAGGTTAAGAGAAC 57.383 34.615 0.00 0.00 0.00 3.01
4127 5909 6.382282 TCAGAATTTGCTCTCAAGGATCTAGA 59.618 38.462 0.00 0.00 33.12 2.43
4175 5958 3.681897 AGCTCGTCAAATGAAGCAGTTAG 59.318 43.478 9.16 0.00 0.00 2.34
4177 5960 2.498167 AGCTCGTCAAATGAAGCAGTT 58.502 42.857 9.16 0.00 0.00 3.16
4362 6145 0.322975 ACGCAGGCTTGACAGATCTT 59.677 50.000 0.00 0.00 0.00 2.40
4471 6254 4.080299 TGGAGTCTCAGACAGCTAGATGTA 60.080 45.833 14.74 0.00 34.60 2.29
4550 6333 9.591792 CATAGATTATGAAGACACTTTCAGTCA 57.408 33.333 0.00 0.00 40.16 3.41
4622 6405 6.776116 AGAAGGTATGATGGTACGATAAGTCA 59.224 38.462 0.00 0.00 0.00 3.41
4625 6408 8.888579 AAAAGAAGGTATGATGGTACGATAAG 57.111 34.615 0.00 0.00 0.00 1.73
4640 6423 7.231925 GTGGGTTTTCAGGATAAAAAGAAGGTA 59.768 37.037 0.00 0.00 30.53 3.08
4726 6509 6.846505 TGGAGGATGAGTATTAGGTTCTTCAT 59.153 38.462 0.00 0.00 0.00 2.57
4737 6520 4.596643 AGCAAGCTATGGAGGATGAGTATT 59.403 41.667 0.00 0.00 0.00 1.89
4837 6622 7.679638 GCAGGTGTTATTCAGCCTACAAATTAG 60.680 40.741 0.00 0.00 44.62 1.73
4922 6710 1.590147 CCGCTGGTTCTTCCGTAGT 59.410 57.895 0.00 0.00 39.52 2.73
4934 6722 2.512515 GGAAGCTACTGCCGCTGG 60.513 66.667 2.06 0.00 40.80 4.85
4943 6749 3.626154 CTTCGTCCGAGGAAGCTAC 57.374 57.895 15.85 0.00 34.01 3.58
5072 8349 6.964807 TTCTACTAGTGTGTCTACCAAACA 57.035 37.500 5.39 0.00 33.30 2.83
5145 8422 6.038603 TGTTGGTGAGAGAAATTCAGAAACTG 59.961 38.462 0.00 0.00 0.00 3.16
5173 8450 8.647226 CAAATTCTTAGCAAAAATAAACTCCCG 58.353 33.333 0.00 0.00 0.00 5.14
5422 8701 7.309177 TCAAAAACACTTCTTTTCGTTCATCA 58.691 30.769 0.00 0.00 0.00 3.07
5431 8710 8.257306 TCCTAATGCTTCAAAAACACTTCTTTT 58.743 29.630 0.00 0.00 0.00 2.27
5837 9118 1.600638 GGCGGCTACAACCTTAGGT 59.399 57.895 0.00 0.00 37.65 3.08
5923 9294 2.758327 TCACGGTGGCGGCTATCT 60.758 61.111 11.43 0.00 0.00 1.98
5977 9348 1.022982 GGCGGCTACAACAACCCTAC 61.023 60.000 0.00 0.00 0.00 3.18
6096 9485 3.855950 GCTTCAAATCTTCAGGAAATGCG 59.144 43.478 0.00 0.00 0.00 4.73
6099 9488 3.445096 CCGGCTTCAAATCTTCAGGAAAT 59.555 43.478 0.00 0.00 0.00 2.17
6448 9839 1.475034 GGAAACCTCGCATGCCATCTA 60.475 52.381 13.15 0.00 0.00 1.98
6695 10086 2.165845 CTCTCCCGGACGAACTATGTTT 59.834 50.000 0.73 0.00 0.00 2.83
6745 10136 2.863484 TGCCACCCCCATCACCTT 60.863 61.111 0.00 0.00 0.00 3.50
6931 10326 5.172687 TGGCTCTGATACCATGTAAAACA 57.827 39.130 0.00 0.00 0.00 2.83
7076 10471 2.432146 CGAACTGATGGAAGGAGATGGA 59.568 50.000 0.00 0.00 0.00 3.41
7079 10474 2.432510 GTCCGAACTGATGGAAGGAGAT 59.567 50.000 0.00 0.00 35.67 2.75
7085 10480 3.146066 CCAAAAGTCCGAACTGATGGAA 58.854 45.455 0.36 0.00 41.39 3.53
7126 10521 5.916883 CAGAAAATGTGGACACTGTTGAATC 59.083 40.000 3.91 0.91 0.00 2.52
7143 10538 8.757982 ATAAGCCATTATCACTCACAGAAAAT 57.242 30.769 0.00 0.00 0.00 1.82
7594 10992 2.481952 CAGAAGGCAGGAAAGAACGAAG 59.518 50.000 0.00 0.00 0.00 3.79
7648 11048 8.713737 ATCCTAACTCGTTGGTTTATTAAGAC 57.286 34.615 0.00 0.00 0.00 3.01
7727 11127 7.097192 CCTAGTTCTGCAGTTACATGAAACTA 58.903 38.462 14.67 15.20 37.61 2.24
7787 11187 6.542005 TGTTTTTCTCACAGCAGTTCAGATAA 59.458 34.615 0.00 0.00 0.00 1.75
7812 11212 1.357079 ACTCGTACAGGTAGGGTTCCT 59.643 52.381 0.00 0.00 37.71 3.36
7861 11261 8.615878 AACTACATGTTAGCTGTAAAATGTGA 57.384 30.769 13.26 0.78 43.97 3.58
7869 11269 8.118976 ACTTACAGAACTACATGTTAGCTGTA 57.881 34.615 18.46 18.46 41.20 2.74
8040 11440 0.685458 ATGAATGCCAACCTGCCTCC 60.685 55.000 0.00 0.00 0.00 4.30
8097 11497 3.547567 GGTGACTGCAGCTTGATCT 57.452 52.632 15.27 0.00 39.38 2.75
8391 11906 5.646360 GGCTACTAAATGTTGGAGCTTAACA 59.354 40.000 16.61 16.61 41.72 2.41
8415 11930 6.138110 TGCATTGCATCATCCAAAAGATGTG 61.138 40.000 7.38 2.80 42.71 3.21
8519 12034 5.452917 GCGAACAGGTACTCCTAATTATGGT 60.453 44.000 0.00 0.00 43.07 3.55
8520 12035 4.989168 GCGAACAGGTACTCCTAATTATGG 59.011 45.833 0.00 0.00 43.07 2.74
8577 12092 6.024552 AGGTATTTGTACACCTGCAAAATG 57.975 37.500 0.00 0.00 43.64 2.32
8945 12470 4.389374 CTTGACTACACCACCACAAAGAT 58.611 43.478 0.00 0.00 0.00 2.40
9301 12826 1.424638 TTACCCTGATAGAGGCCTGC 58.575 55.000 12.00 1.09 41.19 4.85
9380 12905 2.035632 GACTAGGATGTGTCCCAGGAG 58.964 57.143 0.00 0.00 46.34 3.69
9403 12928 0.684535 TGGAGATGCCGTTGAGTTCA 59.315 50.000 0.00 0.00 40.66 3.18
9425 12950 1.194781 CCCGAGGATCACCCCTATGG 61.195 65.000 0.00 0.00 36.49 2.74
9569 13094 5.727434 CTGCTTTTTATGCCTTTCTTGGAT 58.273 37.500 0.00 0.00 0.00 3.41
9580 13105 6.632171 AAAAATAGTCGCTGCTTTTTATGC 57.368 33.333 7.30 0.00 31.10 3.14
9600 13125 5.224562 TGCGTTTTCTCGAAGAAGAAAAA 57.775 34.783 12.04 0.00 41.44 1.94
9601 13126 4.868450 TGCGTTTTCTCGAAGAAGAAAA 57.132 36.364 7.52 7.52 39.44 2.29
9602 13127 4.569162 TCTTGCGTTTTCTCGAAGAAGAAA 59.431 37.500 0.00 0.00 35.37 2.52
9603 13128 4.116961 TCTTGCGTTTTCTCGAAGAAGAA 58.883 39.130 0.00 0.00 35.37 2.52
9604 13129 3.713288 TCTTGCGTTTTCTCGAAGAAGA 58.287 40.909 0.00 0.00 35.37 2.87
9605 13130 4.209288 TCTTCTTGCGTTTTCTCGAAGAAG 59.791 41.667 20.58 20.58 44.30 2.85
9606 13131 4.116961 TCTTCTTGCGTTTTCTCGAAGAA 58.883 39.130 0.00 0.00 35.35 2.52
9607 13132 3.713288 TCTTCTTGCGTTTTCTCGAAGA 58.287 40.909 0.00 0.00 35.76 2.87
9608 13133 3.662973 GCTCTTCTTGCGTTTTCTCGAAG 60.663 47.826 0.00 0.00 0.00 3.79
9609 13134 2.221055 GCTCTTCTTGCGTTTTCTCGAA 59.779 45.455 0.00 0.00 0.00 3.71
9610 13135 1.792949 GCTCTTCTTGCGTTTTCTCGA 59.207 47.619 0.00 0.00 0.00 4.04
9611 13136 1.795286 AGCTCTTCTTGCGTTTTCTCG 59.205 47.619 0.00 0.00 35.28 4.04
9612 13137 3.549574 CAAGCTCTTCTTGCGTTTTCTC 58.450 45.455 0.00 0.00 44.85 2.87
9613 13138 3.615849 CAAGCTCTTCTTGCGTTTTCT 57.384 42.857 0.00 0.00 44.85 2.52
9622 13147 4.243270 GCAATGAAATGCAAGCTCTTCTT 58.757 39.130 0.00 0.00 45.70 2.52
9623 13148 3.846360 GCAATGAAATGCAAGCTCTTCT 58.154 40.909 0.00 0.00 45.70 2.85
9633 13158 5.927954 TTCTTTCCAAAGCAATGAAATGC 57.072 34.783 0.00 0.00 46.78 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.