Multiple sequence alignment - TraesCS7B01G196500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G196500 chr7B 100.000 4300 0 0 1 4300 337643393 337639094 0.000000e+00 7941.0
1 TraesCS7B01G196500 chr7B 96.491 57 1 1 2130 2185 378356184 378356128 4.580000e-15 93.5
2 TraesCS7B01G196500 chr7D 96.888 1864 39 5 700 2544 192162077 192160214 0.000000e+00 3103.0
3 TraesCS7B01G196500 chr7D 93.922 1777 81 15 2537 4300 192159684 192157922 0.000000e+00 2658.0
4 TraesCS7B01G196500 chr7D 90.529 718 45 14 1 705 192162835 192162128 0.000000e+00 928.0
5 TraesCS7B01G196500 chr7D 96.491 57 1 1 2130 2185 383900725 383900669 4.580000e-15 93.5
6 TraesCS7B01G196500 chr7D 96.429 56 1 1 2135 2190 429575964 429575910 1.650000e-14 91.6
7 TraesCS7B01G196500 chr7A 91.229 1448 97 16 701 2125 201547162 201545722 0.000000e+00 1943.0
8 TraesCS7B01G196500 chr7A 92.480 1343 90 9 2848 4185 201543933 201542597 0.000000e+00 1910.0
9 TraesCS7B01G196500 chr7A 92.363 694 41 4 20 705 201547897 201547208 0.000000e+00 977.0
10 TraesCS7B01G196500 chr7A 88.006 617 49 14 2186 2797 201544528 201543932 0.000000e+00 706.0
11 TraesCS7B01G196500 chr5D 96.552 58 2 0 2134 2191 498683191 498683134 3.540000e-16 97.1
12 TraesCS7B01G196500 chr1D 100.000 52 0 0 2134 2185 96067121 96067172 3.540000e-16 97.1
13 TraesCS7B01G196500 chr4B 93.651 63 3 1 2134 2195 212494747 212494809 4.580000e-15 93.5
14 TraesCS7B01G196500 chr2D 96.429 56 2 0 2134 2189 81020119 81020064 4.580000e-15 93.5
15 TraesCS7B01G196500 chr1B 94.915 59 3 0 2132 2190 70337205 70337263 4.580000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G196500 chr7B 337639094 337643393 4299 True 7941.000000 7941 100.000000 1 4300 1 chr7B.!!$R1 4299
1 TraesCS7B01G196500 chr7D 192157922 192162835 4913 True 2229.666667 3103 93.779667 1 4300 3 chr7D.!!$R3 4299
2 TraesCS7B01G196500 chr7A 201542597 201547897 5300 True 1384.000000 1943 91.019500 20 4185 4 chr7A.!!$R1 4165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 257 0.516877 CGGATGAAAAGCTGTTCGCA 59.483 50.0 12.03 0.0 42.61 5.10 F
232 261 1.662517 TGAAAAGCTGTTCGCAGTGA 58.337 45.0 12.03 0.0 46.58 3.41 F
1757 1872 1.144969 CTTGCCAGCAAAGCACAATG 58.855 50.0 6.52 0.0 40.69 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1838 2.239402 TGGCAAGCATGGACTCAATCTA 59.761 45.455 0.00 0.0 0.0 1.98 R
1956 2072 6.627243 AGTAAAAACCCAAGACACAAAGAAC 58.373 36.000 0.00 0.0 0.0 3.01 R
3670 5461 1.095228 CCTGCGCCGTTACCATCAAT 61.095 55.000 4.18 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.927856 TCTCTGCTTTCGCCCCCA 60.928 61.111 0.00 0.00 34.43 4.96
139 166 2.543637 TCCCCTCCTCTCCCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
160 187 3.297134 TTGCCATCTCCAACCTAATCC 57.703 47.619 0.00 0.00 0.00 3.01
173 201 2.696187 ACCTAATCCTTCTCTTCTCGCC 59.304 50.000 0.00 0.00 0.00 5.54
174 202 2.962421 CCTAATCCTTCTCTTCTCGCCT 59.038 50.000 0.00 0.00 0.00 5.52
182 210 1.603236 CTCTTCTCGCCTGTCTGCCT 61.603 60.000 0.00 0.00 0.00 4.75
212 241 1.899437 AAAGGGCTCGCTCATTCGGA 61.899 55.000 0.00 0.00 0.00 4.55
213 242 1.690219 AAGGGCTCGCTCATTCGGAT 61.690 55.000 0.00 0.00 0.00 4.18
228 257 0.516877 CGGATGAAAAGCTGTTCGCA 59.483 50.000 12.03 0.00 42.61 5.10
232 261 1.662517 TGAAAAGCTGTTCGCAGTGA 58.337 45.000 12.03 0.00 46.58 3.41
339 368 2.379907 AGATGGATTTTGGTGGTCTGGT 59.620 45.455 0.00 0.00 0.00 4.00
408 437 8.893219 TTCTGATAACTGCAGTTTATATCCTG 57.107 34.615 35.20 23.54 39.31 3.86
425 454 9.569122 TTATATCCTGTTTATAGGTTTGCTTCC 57.431 33.333 0.00 0.00 38.99 3.46
446 475 9.860898 GCTTCCTGATTTGTTGATTAATTACTT 57.139 29.630 0.00 0.00 0.00 2.24
538 574 3.942829 TGGAGCTGGTCAGAATAAACTG 58.057 45.455 9.30 0.00 39.02 3.16
637 673 9.612066 ATGATTTTTGGTGTTGACAAAGTTATT 57.388 25.926 0.00 0.00 38.84 1.40
936 1029 6.835174 ACATTATCTGATCATTACCTGCAGT 58.165 36.000 13.81 3.45 0.00 4.40
1053 1146 7.334858 AGGAATCTCTTAGCTTTGTTAAGAGG 58.665 38.462 21.94 10.45 46.27 3.69
1211 1304 4.144297 TCATGGCCAAAATATACTCTGCC 58.856 43.478 10.96 0.00 37.90 4.85
1400 1496 8.219178 TCAAACCAACAAACCCTATCTTTAGTA 58.781 33.333 0.00 0.00 0.00 1.82
1757 1872 1.144969 CTTGCCAGCAAAGCACAATG 58.855 50.000 6.52 0.00 40.69 2.82
1947 2063 5.582665 GGTCATCAGACTTGATACCTTTCAC 59.417 44.000 0.00 0.00 42.12 3.18
2058 2174 2.704572 ACAAGCTGTATTCCACTGAGC 58.295 47.619 0.00 0.00 0.00 4.26
2330 3580 7.532682 AAATAAAAACACACACGATTGCTTT 57.467 28.000 0.00 0.00 0.00 3.51
2505 3755 7.438160 CACATAACTTCTGAACACTTCACTGTA 59.562 37.037 0.00 0.00 35.46 2.74
2845 4636 5.176590 GCTCCTGTCTCATATTTGATCGAAC 59.823 44.000 0.00 0.00 0.00 3.95
3070 4861 1.899814 TCTGTAGCCTGTCGGTTCATT 59.100 47.619 0.00 0.00 0.00 2.57
3302 5093 2.753247 AGCTTCCTTCTCCGATAACCT 58.247 47.619 0.00 0.00 0.00 3.50
3341 5132 3.684305 CAGCACTACGATGAAAATGACCA 59.316 43.478 0.00 0.00 0.00 4.02
3359 5150 2.173382 GACACGGAATGCGTGCAC 59.827 61.111 26.22 16.71 40.61 4.57
3403 5194 2.502295 CTCAGAGCCCATTGCCTTATC 58.498 52.381 0.00 0.00 42.71 1.75
3449 5240 0.393132 TTTGTGATCCGCCCGCATAA 60.393 50.000 0.00 0.00 0.00 1.90
3476 5267 3.732471 GCGCGGATAGTATCTCTGAATCC 60.732 52.174 8.83 0.00 34.08 3.01
3479 5270 4.464597 GCGGATAGTATCTCTGAATCCCTT 59.535 45.833 9.97 0.00 33.91 3.95
3541 5332 7.251704 AGACAAACTTCAGTGTACAATTGAG 57.748 36.000 13.59 0.00 0.00 3.02
3670 5461 2.844946 TGCGACTGATTTCCTGTTCAA 58.155 42.857 0.00 0.00 0.00 2.69
3671 5462 3.411446 TGCGACTGATTTCCTGTTCAAT 58.589 40.909 0.00 0.00 0.00 2.57
3714 5512 7.864379 GGATGGCAAATGTTTAGTTCATATCAG 59.136 37.037 0.00 0.00 0.00 2.90
3735 5533 6.519382 TCAGTTTCTGCTATATCATGGTCAG 58.481 40.000 0.00 0.00 0.00 3.51
3772 5570 1.318158 CCATCCAGGCAGGTGCTTTC 61.318 60.000 1.26 0.00 41.70 2.62
3781 5579 2.561733 CAGGTGCTTTCATCTGCATG 57.438 50.000 0.00 0.00 43.70 4.06
3792 5590 1.248101 ATCTGCATGCTGCTGTTGCA 61.248 50.000 20.33 19.04 45.31 4.08
3811 5609 2.176273 GCTGTGTATCAGGCGCAGG 61.176 63.158 10.83 0.00 43.78 4.85
3839 5637 4.166888 GCTCCTCAGCGGCATGGA 62.167 66.667 1.45 5.62 35.39 3.41
3871 5672 4.058817 AGTTCGTCGCATCTTTCTTTCTT 58.941 39.130 0.00 0.00 0.00 2.52
3874 5675 2.726066 CGTCGCATCTTTCTTTCTTGCC 60.726 50.000 0.00 0.00 0.00 4.52
3876 5677 1.197721 CGCATCTTTCTTTCTTGCCGT 59.802 47.619 0.00 0.00 0.00 5.68
3879 5680 3.119708 GCATCTTTCTTTCTTGCCGTGAT 60.120 43.478 0.00 0.00 0.00 3.06
3892 5693 1.143305 CCGTGATCAGCCATCGATTC 58.857 55.000 0.00 0.00 33.61 2.52
3895 5696 3.552890 CCGTGATCAGCCATCGATTCTTA 60.553 47.826 0.00 0.00 33.61 2.10
3896 5697 3.426859 CGTGATCAGCCATCGATTCTTAC 59.573 47.826 0.00 0.00 33.61 2.34
3931 5732 4.600062 AGAAAGGCGACATAAAATTCCCT 58.400 39.130 0.00 0.00 0.00 4.20
3975 5777 2.446435 GCCTTGGAGTTTTCCTGCATA 58.554 47.619 0.00 0.00 41.58 3.14
3976 5778 2.825532 GCCTTGGAGTTTTCCTGCATAA 59.174 45.455 0.00 0.00 41.58 1.90
3994 5796 4.659480 GCATGTTTGGTGCTGTGG 57.341 55.556 0.00 0.00 39.45 4.17
4034 5836 2.800250 ACCAAGCATTCTCTTTCCCTG 58.200 47.619 0.00 0.00 0.00 4.45
4076 5878 5.008613 TGTTGATGCAGGTGAAAACTAGTTC 59.991 40.000 8.95 0.00 0.00 3.01
4121 5923 5.872963 TGGATATCCCATCATTCAGTGAAG 58.127 41.667 19.34 4.09 40.82 3.02
4144 5947 5.956563 AGATCCATCTTTTGCTTTGGAAGAT 59.043 36.000 0.00 0.00 41.36 2.40
4197 6005 9.489084 GTGGATATACACTAGCATTATTTGTGA 57.511 33.333 11.08 0.00 38.32 3.58
4225 6033 9.319143 ACTTTTGATATAAGTAGATCACACAGC 57.681 33.333 0.00 0.00 34.05 4.40
4226 6034 7.930513 TTTGATATAAGTAGATCACACAGCG 57.069 36.000 0.00 0.00 34.05 5.18
4227 6035 6.877611 TGATATAAGTAGATCACACAGCGA 57.122 37.500 0.00 0.00 29.77 4.93
4228 6036 6.903419 TGATATAAGTAGATCACACAGCGAG 58.097 40.000 0.00 0.00 29.77 5.03
4229 6037 6.710744 TGATATAAGTAGATCACACAGCGAGA 59.289 38.462 0.00 0.00 29.77 4.04
4230 6038 5.836821 ATAAGTAGATCACACAGCGAGAA 57.163 39.130 0.00 0.00 0.00 2.87
4231 6039 3.773860 AGTAGATCACACAGCGAGAAG 57.226 47.619 0.00 0.00 0.00 2.85
4232 6040 3.348119 AGTAGATCACACAGCGAGAAGA 58.652 45.455 0.00 0.00 0.00 2.87
4233 6041 3.951037 AGTAGATCACACAGCGAGAAGAT 59.049 43.478 0.00 0.00 0.00 2.40
4234 6042 3.435105 AGATCACACAGCGAGAAGATC 57.565 47.619 0.00 0.00 33.79 2.75
4235 6043 2.757314 AGATCACACAGCGAGAAGATCA 59.243 45.455 11.95 0.00 35.52 2.92
4238 6046 2.558359 TCACACAGCGAGAAGATCAGAA 59.442 45.455 0.00 0.00 0.00 3.02
4254 6062 6.058183 AGATCAGAATATGCCACAGGTTTAC 58.942 40.000 0.00 0.00 0.00 2.01
4276 6084 8.617290 TTACCAAAACCTTTTAGAGAGACATC 57.383 34.615 0.00 0.00 0.00 3.06
4278 6086 6.712547 ACCAAAACCTTTTAGAGAGACATCTG 59.287 38.462 0.00 0.00 35.30 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.319641 GGTTGGACTCGAGCGAAGTT 60.320 55.000 13.61 0.00 0.00 2.66
85 112 4.688419 CGCAACAGCAACTGGGCG 62.688 66.667 17.19 17.19 46.24 6.13
139 166 3.269381 AGGATTAGGTTGGAGATGGCAAA 59.731 43.478 0.00 0.00 0.00 3.68
160 187 1.735369 GCAGACAGGCGAGAAGAGAAG 60.735 57.143 0.00 0.00 0.00 2.85
182 210 0.035439 GAGCCCTTTGGAATCCGTCA 60.035 55.000 0.00 0.00 0.00 4.35
228 257 2.837947 TGGATGAGATTGGGAGTCACT 58.162 47.619 0.00 0.00 0.00 3.41
232 261 5.198965 CAAGAAATGGATGAGATTGGGAGT 58.801 41.667 0.00 0.00 0.00 3.85
290 319 1.248785 CGGAGTGAGGGTTCTCGGAA 61.249 60.000 0.00 0.00 42.79 4.30
291 320 1.677966 CGGAGTGAGGGTTCTCGGA 60.678 63.158 0.00 0.00 42.79 4.55
339 368 1.272490 AGCGGTGATCAAGAACGAGAA 59.728 47.619 12.62 0.00 0.00 2.87
408 437 7.602753 ACAAATCAGGAAGCAAACCTATAAAC 58.397 34.615 0.00 0.00 35.84 2.01
464 500 5.197451 TCCACAAACAACAGGTACAGATTT 58.803 37.500 0.00 0.00 0.00 2.17
637 673 5.165961 AGAGCTCACAAAAGGTAAGCATA 57.834 39.130 17.77 0.00 35.42 3.14
659 695 8.680039 TTTAAGAAAAGAGAACGGGAACATTA 57.320 30.769 0.00 0.00 0.00 1.90
1211 1304 6.350110 CCAAATATTACCAGGGCCGATTATTG 60.350 42.308 0.00 0.00 0.00 1.90
1400 1496 6.267014 AGAAATGCAATATCCAAGCAGCTAAT 59.733 34.615 0.00 0.00 42.14 1.73
1723 1838 2.239402 TGGCAAGCATGGACTCAATCTA 59.761 45.455 0.00 0.00 0.00 1.98
1747 1862 7.280652 GGGAAATACATATTTGCATTGTGCTTT 59.719 33.333 15.17 0.00 45.31 3.51
1757 1872 7.807977 TCTGAAGAGGGAAATACATATTTGC 57.192 36.000 7.20 7.20 41.47 3.68
1842 1957 8.573885 ACATCATGCATGGAGTAAGATATTTTG 58.426 33.333 25.97 3.06 36.72 2.44
1947 2063 8.522830 ACCCAAGACACAAAGAACATATTTATG 58.477 33.333 0.00 0.00 39.55 1.90
1956 2072 6.627243 AGTAAAAACCCAAGACACAAAGAAC 58.373 36.000 0.00 0.00 0.00 3.01
2309 3559 4.800993 CCAAAGCAATCGTGTGTGTTTTTA 59.199 37.500 0.00 0.00 0.00 1.52
2330 3580 2.061848 TCCCACATCCAAGTTTCTCCA 58.938 47.619 0.00 0.00 0.00 3.86
2827 4618 6.758886 AGAGTTGGTTCGATCAAATATGAGAC 59.241 38.462 3.72 0.00 39.39 3.36
2886 4677 6.153340 ACATGATGCAATGTAAGTTAAAGGCT 59.847 34.615 0.00 0.00 39.01 4.58
3091 4882 1.673477 TGCAGTTCGAGCAGGATGT 59.327 52.632 1.01 0.00 39.31 3.06
3201 4992 8.806429 AATATGAACATCCAGATTGTGTTGTA 57.194 30.769 0.00 0.00 36.30 2.41
3302 5093 2.002586 GCTGATCTTTAGCTCGCAACA 58.997 47.619 0.00 0.00 38.14 3.33
3359 5150 2.654749 TATCACAAGACAGCAGTCCG 57.345 50.000 5.52 0.16 46.15 4.79
3403 5194 2.995466 ACATGATCACAAAAGCACCG 57.005 45.000 0.00 0.00 0.00 4.94
3449 5240 1.170919 AGATACTATCCGCGCACCGT 61.171 55.000 8.75 0.00 34.38 4.83
3479 5270 2.184533 TCGATTTAGCCTGTCCTTCCA 58.815 47.619 0.00 0.00 0.00 3.53
3670 5461 1.095228 CCTGCGCCGTTACCATCAAT 61.095 55.000 4.18 0.00 0.00 2.57
3671 5462 1.743623 CCTGCGCCGTTACCATCAA 60.744 57.895 4.18 0.00 0.00 2.57
3714 5512 4.453819 GGCTGACCATGATATAGCAGAAAC 59.546 45.833 0.00 0.00 36.15 2.78
3735 5533 2.790433 TGGTCTCAAACTTACCATGGC 58.210 47.619 13.04 0.00 38.36 4.40
3743 5541 1.425066 TGCCTGGATGGTCTCAAACTT 59.575 47.619 0.00 0.00 38.35 2.66
3792 5590 1.153489 CTGCGCCTGATACACAGCT 60.153 57.895 4.18 0.00 44.52 4.24
3800 5598 2.124819 CTGCTTCCTGCGCCTGAT 60.125 61.111 4.18 0.00 46.63 2.90
3839 5637 1.202486 TGCGACGAACTTCTTTCAGGT 60.202 47.619 0.00 0.00 33.24 4.00
3874 5675 2.145958 AGAATCGATGGCTGATCACG 57.854 50.000 0.00 0.00 0.00 4.35
3876 5677 4.342092 TCTGTAAGAATCGATGGCTGATCA 59.658 41.667 0.00 0.00 42.31 2.92
3892 5693 5.181433 GCCTTTCTTACCAACCTTCTGTAAG 59.819 44.000 0.00 0.00 41.66 2.34
3895 5696 3.487372 GCCTTTCTTACCAACCTTCTGT 58.513 45.455 0.00 0.00 0.00 3.41
3896 5697 2.484264 CGCCTTTCTTACCAACCTTCTG 59.516 50.000 0.00 0.00 0.00 3.02
3931 5732 1.595109 CGCCATGCTGCCTATCGAA 60.595 57.895 0.00 0.00 0.00 3.71
3950 5751 1.073923 AGGAAAACTCCAAGGCGTCAT 59.926 47.619 0.00 0.00 0.00 3.06
3954 5755 1.172180 TGCAGGAAAACTCCAAGGCG 61.172 55.000 0.00 0.00 0.00 5.52
3983 5785 1.640593 TTCCAGGTCCACAGCACCAA 61.641 55.000 0.00 0.00 36.23 3.67
3984 5786 2.075566 TTCCAGGTCCACAGCACCA 61.076 57.895 0.00 0.00 36.23 4.17
3985 5787 1.600916 GTTCCAGGTCCACAGCACC 60.601 63.158 0.00 0.00 0.00 5.01
3986 5788 0.886490 CAGTTCCAGGTCCACAGCAC 60.886 60.000 0.00 0.00 0.00 4.40
3989 5791 0.764890 TTCCAGTTCCAGGTCCACAG 59.235 55.000 0.00 0.00 0.00 3.66
4010 5812 4.655649 AGGGAAAGAGAATGCTTGGTTTTT 59.344 37.500 0.00 0.00 0.00 1.94
4034 5836 4.214119 TCAACAGAACTGCAGAACTATTGC 59.786 41.667 23.35 0.00 41.86 3.56
4051 5853 3.996150 AGTTTTCACCTGCATCAACAG 57.004 42.857 0.00 0.00 37.42 3.16
4076 5878 7.170277 TCCATTACATACATCTGATCAATGGG 58.830 38.462 13.22 4.33 40.88 4.00
4106 5908 5.622180 AGATGGATCTTCACTGAATGATGG 58.378 41.667 7.88 0.00 37.11 3.51
4121 5923 5.649782 TCTTCCAAAGCAAAAGATGGATC 57.350 39.130 0.00 0.00 41.36 3.36
4144 5947 7.339212 TGTTTCAGAGAAAATCAGAAGAAACCA 59.661 33.333 0.00 0.00 41.51 3.67
4161 5964 6.920758 GCTAGTGTATATCCACTGTTTCAGAG 59.079 42.308 10.97 0.29 45.08 3.35
4203 6011 7.228706 TCTCGCTGTGTGATCTACTTATATCAA 59.771 37.037 0.00 0.00 34.06 2.57
4220 6028 4.150274 GCATATTCTGATCTTCTCGCTGTG 59.850 45.833 0.00 0.00 0.00 3.66
4224 6032 3.431572 GTGGCATATTCTGATCTTCTCGC 59.568 47.826 0.00 0.00 0.00 5.03
4225 6033 4.625028 TGTGGCATATTCTGATCTTCTCG 58.375 43.478 0.00 0.00 0.00 4.04
4226 6034 4.996122 CCTGTGGCATATTCTGATCTTCTC 59.004 45.833 0.00 0.00 0.00 2.87
4227 6035 4.411540 ACCTGTGGCATATTCTGATCTTCT 59.588 41.667 0.00 0.00 0.00 2.85
4228 6036 4.712476 ACCTGTGGCATATTCTGATCTTC 58.288 43.478 0.00 0.00 0.00 2.87
4229 6037 4.785346 ACCTGTGGCATATTCTGATCTT 57.215 40.909 0.00 0.00 0.00 2.40
4230 6038 4.785346 AACCTGTGGCATATTCTGATCT 57.215 40.909 0.00 0.00 0.00 2.75
4231 6039 5.239525 GGTAAACCTGTGGCATATTCTGATC 59.760 44.000 0.00 0.00 0.00 2.92
4232 6040 5.133221 GGTAAACCTGTGGCATATTCTGAT 58.867 41.667 0.00 0.00 0.00 2.90
4233 6041 4.018870 TGGTAAACCTGTGGCATATTCTGA 60.019 41.667 0.02 0.00 36.82 3.27
4234 6042 4.269183 TGGTAAACCTGTGGCATATTCTG 58.731 43.478 0.02 0.00 36.82 3.02
4235 6043 4.584638 TGGTAAACCTGTGGCATATTCT 57.415 40.909 0.02 0.00 36.82 2.40
4238 6046 5.400066 GTTTTGGTAAACCTGTGGCATAT 57.600 39.130 0.02 0.00 38.13 1.78
4254 6062 6.936900 TCAGATGTCTCTCTAAAAGGTTTTGG 59.063 38.462 0.00 0.00 0.00 3.28
4276 6084 4.381079 GCTTAGGACTCCTTGTGTACTCAG 60.381 50.000 1.94 0.00 34.61 3.35
4278 6086 4.112716 GCTTAGGACTCCTTGTGTACTC 57.887 50.000 1.94 0.00 34.61 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.