Multiple sequence alignment - TraesCS7B01G196400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G196400 chr7B 100.000 3947 0 0 1 3947 337635891 337639837 0.000000e+00 7289.0
1 TraesCS7B01G196400 chr7D 93.676 3700 196 16 265 3947 192154984 192158662 0.000000e+00 5502.0
2 TraesCS7B01G196400 chr7A 95.137 3331 130 11 4 3320 201539184 201542496 0.000000e+00 5225.0
3 TraesCS7B01G196400 chr7A 88.959 634 61 7 3319 3947 201542597 201543226 0.000000e+00 774.0
4 TraesCS7B01G196400 chr7A 93.478 46 1 2 254 297 201539401 201539446 2.550000e-07 67.6
5 TraesCS7B01G196400 chr3A 80.702 1197 205 14 1634 2823 57890842 57889665 0.000000e+00 907.0
6 TraesCS7B01G196400 chr3A 79.038 1102 209 12 518 1601 57891930 57890833 0.000000e+00 736.0
7 TraesCS7B01G196400 chr3B 79.984 1224 219 15 518 1721 72483784 72482567 0.000000e+00 880.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G196400 chr7B 337635891 337639837 3946 False 7289.0 7289 100.000000 1 3947 1 chr7B.!!$F1 3946
1 TraesCS7B01G196400 chr7D 192154984 192158662 3678 False 5502.0 5502 93.676000 265 3947 1 chr7D.!!$F1 3682
2 TraesCS7B01G196400 chr7A 201539184 201543226 4042 False 2022.2 5225 92.524667 4 3947 3 chr7A.!!$F1 3943
3 TraesCS7B01G196400 chr3A 57889665 57891930 2265 True 821.5 907 79.870000 518 2823 2 chr3A.!!$R1 2305
4 TraesCS7B01G196400 chr3B 72482567 72483784 1217 True 880.0 880 79.984000 518 1721 1 chr3B.!!$R1 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 333 0.042581 TATGGAGACTGCCCACCAGA 59.957 55.0 0.0 0.0 44.64 3.86 F
1024 1039 0.251341 ACTTGTGAGCCATTCCACCC 60.251 55.0 0.0 0.0 32.61 4.61 F
2547 2583 0.107654 GCTACGGGATGGTTCTGCTT 60.108 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1560 0.321122 CCACAGGTGAGGTGAAGCTC 60.321 60.0 0.00 2.54 38.54 4.09 R
2700 2736 1.009829 GAGCAACCTTGATCGCGATT 58.990 50.0 24.55 6.93 33.61 3.34 R
3610 3762 1.143305 CCGTGATCAGCCATCGATTC 58.857 55.0 0.00 0.00 33.61 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.715896 CTGGAAGTCATGAAAACGATGTG 58.284 43.478 0.00 0.00 0.00 3.21
25 26 3.501828 TGGAAGTCATGAAAACGATGTGG 59.498 43.478 0.00 0.00 0.00 4.17
26 27 3.751175 GGAAGTCATGAAAACGATGTGGA 59.249 43.478 0.00 0.00 0.00 4.02
27 28 4.396166 GGAAGTCATGAAAACGATGTGGAT 59.604 41.667 0.00 0.00 0.00 3.41
29 30 5.300969 AGTCATGAAAACGATGTGGATTG 57.699 39.130 0.00 0.00 0.00 2.67
31 32 4.078537 TCATGAAAACGATGTGGATTGGT 58.921 39.130 0.00 0.00 0.00 3.67
230 233 7.839925 TGTTGTAACAAGACATTTTGTCACCTG 60.840 37.037 10.05 6.63 40.87 4.00
241 244 3.552132 TTGTCACCTGTGCTAGAACAA 57.448 42.857 4.75 0.00 0.00 2.83
307 311 5.106277 GGAATTTTCCACCTACAGCTGTTAC 60.106 44.000 27.06 0.00 46.76 2.50
329 333 0.042581 TATGGAGACTGCCCACCAGA 59.957 55.000 0.00 0.00 44.64 3.86
393 397 7.967908 ACTATTTCCTATACCCACTGAGATTG 58.032 38.462 0.00 0.00 0.00 2.67
448 452 5.712152 ATGACTGGATGGTTTTTGAAGAC 57.288 39.130 0.00 0.00 0.00 3.01
503 507 4.719616 GCACGGAGCAAACGTCGC 62.720 66.667 1.80 1.80 43.58 5.19
729 739 3.686726 CACATCCTACCTTCTTCAAGTGC 59.313 47.826 0.00 0.00 0.00 4.40
784 794 3.437049 GCGAATGCTAACTCTCCTGTTTT 59.563 43.478 0.00 0.00 38.39 2.43
1024 1039 0.251341 ACTTGTGAGCCATTCCACCC 60.251 55.000 0.00 0.00 32.61 4.61
1174 1189 4.289342 CATCTACTCTGCGAGTCTCAATG 58.711 47.826 13.24 9.72 42.40 2.82
1222 1237 4.323569 TCAGGGTCTCTTCTATCACAGT 57.676 45.455 0.00 0.00 0.00 3.55
1231 1246 7.415318 GGTCTCTTCTATCACAGTTCGTCATAA 60.415 40.741 0.00 0.00 0.00 1.90
1274 1289 1.067565 CACTTTAGCTGCTGTCCTCGA 60.068 52.381 13.43 0.00 0.00 4.04
1290 1305 1.201181 CTCGATGAGGATGGGTCGATC 59.799 57.143 0.00 0.00 41.58 3.69
1350 1377 1.535202 GCCAACCCCAATCCCACAA 60.535 57.895 0.00 0.00 0.00 3.33
1383 1410 2.430610 GCCAACCCACTGCAAACCA 61.431 57.895 0.00 0.00 0.00 3.67
1427 1454 0.685458 GGATGCCAATGCCCTTCAGT 60.685 55.000 0.00 0.00 36.33 3.41
1463 1490 0.759346 AACTGTGACCCTGGTCTCAC 59.241 55.000 16.81 12.62 44.80 3.51
1468 1495 1.556911 GTGACCCTGGTCTCACATCAT 59.443 52.381 16.81 0.00 44.80 2.45
1476 1503 5.491070 CCTGGTCTCACATCATCTTGTAAA 58.509 41.667 0.00 0.00 0.00 2.01
1509 1536 0.473755 TTCAGCTGGCTCAACTGGAA 59.526 50.000 15.13 0.00 29.65 3.53
1614 1641 2.891936 TGCTCATGCATCGCCGTC 60.892 61.111 13.33 0.00 45.31 4.79
1675 1702 0.737219 GATTGGTAGCTTGCAGCAGG 59.263 55.000 0.00 0.00 45.56 4.85
1685 1712 1.536180 TGCAGCAGGAAGGTGGAAA 59.464 52.632 0.00 0.00 43.30 3.13
1896 1932 0.467384 ATGAGGCTGGTTCATCGGAG 59.533 55.000 0.00 0.00 29.49 4.63
1917 1953 2.297315 GGACGATGGATATCTGCAGACA 59.703 50.000 20.97 8.26 0.00 3.41
2046 2082 1.890979 CCCAGATGGCAGTCGCATC 60.891 63.158 0.00 0.00 41.24 3.91
2067 2103 1.279271 GCTGTAAAGAAGCTGGAGGGA 59.721 52.381 0.00 0.00 37.69 4.20
2073 2109 2.577772 AGAAGCTGGAGGGAATAGGT 57.422 50.000 0.00 0.00 0.00 3.08
2223 2259 2.040412 AGGGTCACTTGAAAGGTGGATC 59.960 50.000 0.00 0.00 35.61 3.36
2251 2287 1.855599 CCAAGGAGGATGATCCCCTTT 59.144 52.381 23.40 7.85 41.42 3.11
2274 2310 5.789574 TGGACTGGGATACAAGGTTTAAT 57.210 39.130 0.00 0.00 39.74 1.40
2316 2352 2.158475 GGGATTGGCATACCTCCATCAA 60.158 50.000 9.65 0.00 32.87 2.57
2445 2481 1.203100 AGGGAGCAGAGCCATGTTTTT 60.203 47.619 0.00 0.00 0.00 1.94
2547 2583 0.107654 GCTACGGGATGGTTCTGCTT 60.108 55.000 0.00 0.00 0.00 3.91
2672 2708 0.254178 ATCCTTGACGCCAAGCTGAT 59.746 50.000 5.87 1.87 46.42 2.90
2700 2736 0.976641 ACAAGGATGAGCGACTGGAA 59.023 50.000 0.00 0.00 0.00 3.53
2772 2808 0.320421 CGTCCATGTCGAAGGTGGTT 60.320 55.000 10.65 0.00 34.61 3.67
2886 2922 3.771160 GAGGGCATGTCGTCGGGT 61.771 66.667 3.98 0.00 0.00 5.28
3085 3121 8.398665 GTTGATCATTATTTCAGGTGGTACTTC 58.601 37.037 0.00 0.00 0.00 3.01
3089 3125 8.934023 TCATTATTTCAGGTGGTACTTCTTTT 57.066 30.769 0.00 0.00 0.00 2.27
3090 3126 9.362151 TCATTATTTCAGGTGGTACTTCTTTTT 57.638 29.630 0.00 0.00 0.00 1.94
3224 3261 3.764972 AGCTTAGGACTCCTTGTGTACTC 59.235 47.826 1.94 0.00 34.61 2.59
3267 3304 4.584638 TGGTAAACCTGTGGCATATTCT 57.415 40.909 0.02 0.00 36.82 2.40
3276 3313 4.996122 CCTGTGGCATATTCTGATCTTCTC 59.004 45.833 0.00 0.00 0.00 2.87
3278 3315 3.431572 GTGGCATATTCTGATCTTCTCGC 59.568 47.826 0.00 0.00 0.00 5.03
3341 3491 6.920758 GCTAGTGTATATCCACTGTTTCAGAG 59.079 42.308 10.97 0.29 45.08 3.35
3358 3508 7.339212 TGTTTCAGAGAAAATCAGAAGAAACCA 59.661 33.333 0.00 0.00 41.51 3.67
3381 3532 5.649782 TCTTCCAAAGCAAAAGATGGATC 57.350 39.130 0.00 0.00 41.36 3.36
3396 3547 5.622180 AGATGGATCTTCACTGAATGATGG 58.378 41.667 7.88 0.00 37.11 3.51
3426 3577 7.170277 TCCATTACATACATCTGATCAATGGG 58.830 38.462 13.22 4.33 40.88 4.00
3451 3602 3.996150 AGTTTTCACCTGCATCAACAG 57.004 42.857 0.00 0.00 37.42 3.16
3468 3619 4.214119 TCAACAGAACTGCAGAACTATTGC 59.786 41.667 23.35 0.00 41.86 3.56
3492 3643 4.655649 AGGGAAAGAGAATGCTTGGTTTTT 59.344 37.500 0.00 0.00 0.00 1.94
3513 3664 0.764890 TTCCAGTTCCAGGTCCACAG 59.235 55.000 0.00 0.00 0.00 3.66
3516 3667 0.886490 CAGTTCCAGGTCCACAGCAC 60.886 60.000 0.00 0.00 0.00 4.40
3518 3669 2.075566 TTCCAGGTCCACAGCACCA 61.076 57.895 0.00 0.00 36.23 4.17
3519 3670 1.640593 TTCCAGGTCCACAGCACCAA 61.641 55.000 0.00 0.00 36.23 3.67
3548 3700 1.172180 TGCAGGAAAACTCCAAGGCG 61.172 55.000 0.00 0.00 0.00 5.52
3552 3704 1.073923 AGGAAAACTCCAAGGCGTCAT 59.926 47.619 0.00 0.00 0.00 3.06
3571 3723 1.595109 CGCCATGCTGCCTATCGAA 60.595 57.895 0.00 0.00 0.00 3.71
3606 3758 2.484264 CGCCTTTCTTACCAACCTTCTG 59.516 50.000 0.00 0.00 0.00 3.02
3607 3759 3.487372 GCCTTTCTTACCAACCTTCTGT 58.513 45.455 0.00 0.00 0.00 3.41
3610 3762 5.181433 GCCTTTCTTACCAACCTTCTGTAAG 59.819 44.000 0.00 0.00 41.66 2.34
3626 3778 4.342092 TCTGTAAGAATCGATGGCTGATCA 59.658 41.667 0.00 0.00 42.31 2.92
3628 3780 2.145958 AGAATCGATGGCTGATCACG 57.854 50.000 0.00 0.00 0.00 4.35
3663 3818 1.202486 TGCGACGAACTTCTTTCAGGT 60.202 47.619 0.00 0.00 33.24 4.00
3702 3857 2.124819 CTGCTTCCTGCGCCTGAT 60.125 61.111 4.18 0.00 46.63 2.90
3710 3865 1.153489 CTGCGCCTGATACACAGCT 60.153 57.895 4.18 0.00 44.52 4.24
3759 3914 1.425066 TGCCTGGATGGTCTCAAACTT 59.575 47.619 0.00 0.00 38.35 2.66
3767 3922 2.790433 TGGTCTCAAACTTACCATGGC 58.210 47.619 13.04 0.00 38.36 4.40
3788 3943 4.453819 GGCTGACCATGATATAGCAGAAAC 59.546 45.833 0.00 0.00 36.15 2.78
3831 3993 1.743623 CCTGCGCCGTTACCATCAA 60.744 57.895 4.18 0.00 0.00 2.57
3832 3994 1.095228 CCTGCGCCGTTACCATCAAT 61.095 55.000 4.18 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.408299 CACATCGTTTTCATGACTTCCAGTA 59.592 40.000 0.00 0.00 0.00 2.74
1 2 4.214119 CACATCGTTTTCATGACTTCCAGT 59.786 41.667 0.00 0.00 0.00 4.00
2 3 4.378770 CCACATCGTTTTCATGACTTCCAG 60.379 45.833 0.00 0.00 0.00 3.86
24 25 3.316868 TGTTCACGGAAAGAAACCAATCC 59.683 43.478 0.00 0.00 0.00 3.01
25 26 4.561735 TGTTCACGGAAAGAAACCAATC 57.438 40.909 0.00 0.00 0.00 2.67
26 27 4.993029 TTGTTCACGGAAAGAAACCAAT 57.007 36.364 0.00 0.00 0.00 3.16
27 28 4.785511 TTTGTTCACGGAAAGAAACCAA 57.214 36.364 0.00 0.00 0.00 3.67
29 30 4.109766 CCTTTTGTTCACGGAAAGAAACC 58.890 43.478 7.02 0.00 33.35 3.27
31 32 3.131400 CCCCTTTTGTTCACGGAAAGAAA 59.869 43.478 7.02 0.00 33.35 2.52
160 163 1.005347 CAAGCTACGCGTATTTTCGGG 60.005 52.381 20.91 7.26 46.40 5.14
179 182 7.844493 ACTATAGGGATTGATAACGGTTACA 57.156 36.000 2.10 1.40 0.00 2.41
230 233 6.554334 TTCCACTAACAATTGTTCTAGCAC 57.446 37.500 26.46 0.00 39.31 4.40
307 311 1.212688 TGGTGGGCAGTCTCCATATTG 59.787 52.381 0.00 0.00 36.58 1.90
383 387 5.120674 TCGCAAGACAATTACAATCTCAGTG 59.879 40.000 0.00 0.00 45.01 3.66
448 452 0.035881 TGAGCTCTTCCAGTTGGCAG 59.964 55.000 16.19 0.00 34.44 4.85
502 506 1.942657 TGAAGCATAATGAAGAGCCGC 59.057 47.619 0.00 0.00 0.00 6.53
503 507 4.825546 AATGAAGCATAATGAAGAGCCG 57.174 40.909 0.00 0.00 0.00 5.52
729 739 0.394352 GTATTGGTGCCCAGGTGGAG 60.394 60.000 0.00 0.00 37.39 3.86
784 794 3.266510 ACTCAAAGCTATCCGAATGCA 57.733 42.857 0.00 0.00 0.00 3.96
879 889 0.688749 TCCAGCAGCTGCATAGAGGA 60.689 55.000 38.24 29.81 45.16 3.71
1024 1039 7.416817 TGAAGTGTATGTGTCATGTTCTTTTG 58.583 34.615 0.00 0.00 0.00 2.44
1166 1181 4.757149 AGTACCAAGAAGTTGCATTGAGAC 59.243 41.667 0.00 0.00 31.64 3.36
1167 1182 4.973168 AGTACCAAGAAGTTGCATTGAGA 58.027 39.130 0.00 0.00 31.64 3.27
1174 1189 8.718102 TTATCATAGAAGTACCAAGAAGTTGC 57.282 34.615 0.00 0.00 31.64 4.17
1257 1272 1.824852 TCATCGAGGACAGCAGCTAAA 59.175 47.619 0.00 0.00 0.00 1.85
1274 1289 1.668294 GCGATCGACCCATCCTCAT 59.332 57.895 21.57 0.00 0.00 2.90
1290 1305 2.288702 ACTCTGCAGCATATAGAAGGCG 60.289 50.000 9.47 0.00 0.00 5.52
1383 1410 7.136822 TGTCCCACTATTGCAAATAGAGTAT 57.863 36.000 17.40 0.00 0.00 2.12
1427 1454 1.078528 TTTGGAGAGGAGCCGAGGA 59.921 57.895 0.00 0.00 0.00 3.71
1463 1490 6.690098 CGCCTCTTTTGATTTACAAGATGATG 59.310 38.462 0.00 0.00 39.77 3.07
1468 1495 6.038825 TGAAACGCCTCTTTTGATTTACAAGA 59.961 34.615 0.00 0.00 39.77 3.02
1476 1503 2.227388 CAGCTGAAACGCCTCTTTTGAT 59.773 45.455 8.42 0.00 0.00 2.57
1509 1536 6.263842 TCGTACCGATATATTCAACTCCACTT 59.736 38.462 0.00 0.00 0.00 3.16
1520 1547 4.765856 AGGTGAAGCTCGTACCGATATATT 59.234 41.667 7.96 0.00 39.46 1.28
1533 1560 0.321122 CCACAGGTGAGGTGAAGCTC 60.321 60.000 0.00 2.54 38.54 4.09
1794 1827 1.522668 CGATGACAGCCAAAGTTCCA 58.477 50.000 0.00 0.00 0.00 3.53
1896 1932 2.297315 TGTCTGCAGATATCCATCGTCC 59.703 50.000 21.47 2.49 36.20 4.79
2046 2082 1.363744 CCTCCAGCTTCTTTACAGCG 58.636 55.000 0.00 0.00 42.55 5.18
2067 2103 4.439860 ACTCTTTCCTCCCTTGACCTATT 58.560 43.478 0.00 0.00 0.00 1.73
2223 2259 2.108168 TCATCCTCCTTGGTACGGAAG 58.892 52.381 0.00 0.00 37.07 3.46
2251 2287 5.586155 TTAAACCTTGTATCCCAGTCCAA 57.414 39.130 0.00 0.00 0.00 3.53
2274 2310 1.908344 TTGCTGCTCCAAGTGCAATA 58.092 45.000 0.00 0.00 39.98 1.90
2316 2352 5.970592 TGAATGATCTTCGATTCACAGTCT 58.029 37.500 2.85 0.00 34.40 3.24
2445 2481 1.719709 CGTGCCTCTCATCGTCGTA 59.280 57.895 0.00 0.00 0.00 3.43
2547 2583 2.381752 TCCTCCCGCTGATAATCTCA 57.618 50.000 0.00 0.00 0.00 3.27
2672 2708 2.683968 GCTCATCCTTGTCGTTGTACA 58.316 47.619 0.00 0.00 0.00 2.90
2700 2736 1.009829 GAGCAACCTTGATCGCGATT 58.990 50.000 24.55 6.93 33.61 3.34
2772 2808 1.137614 GACGCACTCGAGCATCTGA 59.862 57.895 13.61 0.00 39.41 3.27
2886 2922 3.442625 CCTCACTGTTGTAGTCCGACATA 59.557 47.826 0.40 0.00 37.60 2.29
3224 3261 6.712547 ACCAAAACCTTTTAGAGAGACATCTG 59.287 38.462 0.00 0.00 35.30 2.90
3267 3304 2.757314 AGATCACACAGCGAGAAGATCA 59.243 45.455 11.95 0.00 35.52 2.92
3276 3313 7.930513 TTTGATATAAGTAGATCACACAGCG 57.069 36.000 0.00 0.00 34.05 5.18
3358 3508 5.956563 AGATCCATCTTTTGCTTTGGAAGAT 59.043 36.000 0.00 0.00 41.36 2.40
3381 3532 5.872963 TGGATATCCCATCATTCAGTGAAG 58.127 41.667 19.34 4.09 40.82 3.02
3426 3577 5.008613 TGTTGATGCAGGTGAAAACTAGTTC 59.991 40.000 8.95 0.00 0.00 3.01
3468 3619 2.800250 ACCAAGCATTCTCTTTCCCTG 58.200 47.619 0.00 0.00 0.00 4.45
3508 3659 4.659480 GCATGTTTGGTGCTGTGG 57.341 55.556 0.00 0.00 39.45 4.17
3526 3677 2.825532 GCCTTGGAGTTTTCCTGCATAA 59.174 45.455 0.00 0.00 41.58 1.90
3527 3678 2.446435 GCCTTGGAGTTTTCCTGCATA 58.554 47.619 0.00 0.00 41.58 3.14
3571 3723 4.600062 AGAAAGGCGACATAAAATTCCCT 58.400 39.130 0.00 0.00 0.00 4.20
3606 3758 3.426859 CGTGATCAGCCATCGATTCTTAC 59.573 47.826 0.00 0.00 33.61 2.34
3607 3759 3.552890 CCGTGATCAGCCATCGATTCTTA 60.553 47.826 0.00 0.00 33.61 2.10
3610 3762 1.143305 CCGTGATCAGCCATCGATTC 58.857 55.000 0.00 0.00 33.61 2.52
3623 3775 3.119708 GCATCTTTCTTTCTTGCCGTGAT 60.120 43.478 0.00 0.00 0.00 3.06
3626 3778 1.197721 CGCATCTTTCTTTCTTGCCGT 59.802 47.619 0.00 0.00 0.00 5.68
3628 3780 2.726066 CGTCGCATCTTTCTTTCTTGCC 60.726 50.000 0.00 0.00 0.00 4.52
3631 3783 4.058817 AGTTCGTCGCATCTTTCTTTCTT 58.941 39.130 0.00 0.00 0.00 2.52
3663 3818 4.166888 GCTCCTCAGCGGCATGGA 62.167 66.667 1.45 5.62 35.39 3.41
3691 3846 2.176273 GCTGTGTATCAGGCGCAGG 61.176 63.158 10.83 0.00 43.78 4.85
3710 3865 1.248101 ATCTGCATGCTGCTGTTGCA 61.248 50.000 20.33 19.04 45.31 4.08
3721 3876 2.561733 CAGGTGCTTTCATCTGCATG 57.438 50.000 0.00 0.00 43.70 4.06
3730 3885 1.318158 CCATCCAGGCAGGTGCTTTC 61.318 60.000 1.26 0.00 41.70 2.62
3767 3922 6.519382 TCAGTTTCTGCTATATCATGGTCAG 58.481 40.000 0.00 0.00 0.00 3.51
3788 3943 7.864379 GGATGGCAAATGTTTAGTTCATATCAG 59.136 37.037 0.00 0.00 0.00 2.90
3831 3993 3.411446 TGCGACTGATTTCCTGTTCAAT 58.589 40.909 0.00 0.00 0.00 2.57
3832 3994 2.844946 TGCGACTGATTTCCTGTTCAA 58.155 42.857 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.