Multiple sequence alignment - TraesCS7B01G195100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G195100 chr7B 100.000 3395 0 0 1 3395 335443534 335446928 0.000000e+00 6270.0
1 TraesCS7B01G195100 chr7D 91.785 3299 225 17 2 3267 190446084 190449369 0.000000e+00 4549.0
2 TraesCS7B01G195100 chr7D 89.509 753 59 4 2 738 190402421 190403169 0.000000e+00 935.0
3 TraesCS7B01G195100 chr7A 92.472 2816 191 8 597 3395 199237022 199239833 0.000000e+00 4006.0
4 TraesCS7B01G195100 chr7A 88.496 565 50 6 3 552 199220411 199220975 0.000000e+00 669.0
5 TraesCS7B01G195100 chr7A 97.917 48 1 0 544 591 199229819 199229866 2.170000e-12 84.2
6 TraesCS7B01G195100 chr6A 90.769 65 5 1 463 526 427156050 427155986 6.040000e-13 86.1
7 TraesCS7B01G195100 chr1B 100.000 28 0 0 217 244 633969635 633969662 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G195100 chr7B 335443534 335446928 3394 False 6270 6270 100.000 1 3395 1 chr7B.!!$F1 3394
1 TraesCS7B01G195100 chr7D 190446084 190449369 3285 False 4549 4549 91.785 2 3267 1 chr7D.!!$F2 3265
2 TraesCS7B01G195100 chr7D 190402421 190403169 748 False 935 935 89.509 2 738 1 chr7D.!!$F1 736
3 TraesCS7B01G195100 chr7A 199237022 199239833 2811 False 4006 4006 92.472 597 3395 1 chr7A.!!$F3 2798
4 TraesCS7B01G195100 chr7A 199220411 199220975 564 False 669 669 88.496 3 552 1 chr7A.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 622 0.242017 GCGCATCCAGTCTTGCTTTT 59.758 50.0 0.30 0.0 36.71 2.27 F
1068 1100 0.117541 TTGGTAGTAGTGGAGGGCCA 59.882 55.0 6.18 0.0 43.47 5.36 F
2188 2221 0.250553 GTCCAATGTCCCGAACACCA 60.251 55.0 0.00 0.0 41.75 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2348 2381 0.608640 GGGTGTCGATCCTGTTGACT 59.391 55.000 8.99 0.0 41.16 3.41 R
2352 2385 1.983224 CTGGGGTGTCGATCCTGTT 59.017 57.895 8.99 0.0 0.00 3.16 R
3360 3396 1.027815 ATTCCCTACTCCTCCCCTGT 58.972 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.496899 TCTGGCTCCATGGACTTTTC 57.503 50.000 11.44 0.00 0.00 2.29
43 54 8.178313 TGGACTTTTCCTCCTAAAAGATTTTC 57.822 34.615 14.20 3.47 45.33 2.29
67 78 7.338710 TCTGGAAATCTATCGAACTTGGAAAT 58.661 34.615 0.00 0.00 0.00 2.17
148 165 5.163723 CGATGTAGTTCATGCAATTGAAGGT 60.164 40.000 10.34 0.00 36.34 3.50
268 285 6.653020 TGCAACTTTCCATACATCTCATACT 58.347 36.000 0.00 0.00 0.00 2.12
270 287 7.710907 TGCAACTTTCCATACATCTCATACTAC 59.289 37.037 0.00 0.00 0.00 2.73
295 312 1.880027 GTTTGGAGCCATCAGACGTTT 59.120 47.619 0.00 0.00 0.00 3.60
306 323 4.094442 CCATCAGACGTTTAGTTTTAGGCC 59.906 45.833 0.00 0.00 0.00 5.19
307 324 4.612264 TCAGACGTTTAGTTTTAGGCCT 57.388 40.909 11.78 11.78 0.00 5.19
353 371 4.612939 CGATCTCGTTGGATGCTTCGTATA 60.613 45.833 0.00 0.00 34.11 1.47
364 382 3.824133 TGCTTCGTATAGTGGGCTACTA 58.176 45.455 13.37 13.37 45.50 1.82
377 395 6.821388 AGTGGGCTACTACTCTAATGAAATG 58.179 40.000 0.00 0.00 38.04 2.32
400 418 7.898014 TGCCGATACATTATCATATAGACCT 57.102 36.000 0.00 0.00 34.87 3.85
401 419 8.306313 TGCCGATACATTATCATATAGACCTT 57.694 34.615 0.00 0.00 34.87 3.50
426 444 6.107901 AGCTTCAAGGATATGATACCTCAC 57.892 41.667 0.00 0.00 35.25 3.51
442 460 3.118482 ACCTCACGATGCTCATCTTGAAT 60.118 43.478 16.38 8.08 42.83 2.57
453 471 4.999311 GCTCATCTTGAATTTGCCCTTTTT 59.001 37.500 0.00 0.00 0.00 1.94
529 547 5.886960 ATCTTTACTGTCATGCAAGAACC 57.113 39.130 0.00 0.00 0.00 3.62
532 550 2.645838 ACTGTCATGCAAGAACCTGT 57.354 45.000 0.00 0.00 0.00 4.00
542 560 3.780294 TGCAAGAACCTGTATATCACCCT 59.220 43.478 0.00 0.00 0.00 4.34
543 561 4.130118 GCAAGAACCTGTATATCACCCTG 58.870 47.826 0.00 0.00 0.00 4.45
559 577 6.471233 TCACCCTGACATAGACATAGAAAG 57.529 41.667 0.00 0.00 0.00 2.62
566 584 7.373617 TGACATAGACATAGAAAGCCCATAA 57.626 36.000 0.00 0.00 0.00 1.90
586 604 8.774586 CCCATAATATGTGTTAGTTCACTAAGC 58.225 37.037 0.00 0.00 38.94 3.09
593 611 3.259064 GTTAGTTCACTAAGCGCATCCA 58.741 45.455 11.47 0.00 38.94 3.41
600 618 0.654683 CTAAGCGCATCCAGTCTTGC 59.345 55.000 11.47 0.00 35.50 4.01
603 621 0.607489 AGCGCATCCAGTCTTGCTTT 60.607 50.000 11.47 0.00 36.71 3.51
604 622 0.242017 GCGCATCCAGTCTTGCTTTT 59.758 50.000 0.30 0.00 36.71 2.27
605 623 1.336240 GCGCATCCAGTCTTGCTTTTT 60.336 47.619 0.30 0.00 36.71 1.94
629 647 4.883083 TCCAGTTAGTTAGCTTCACACAG 58.117 43.478 0.00 0.00 0.00 3.66
676 694 4.537751 AGTGTATCACTAGCTGGCTAAGA 58.462 43.478 0.00 5.55 43.46 2.10
686 704 5.826737 ACTAGCTGGCTAAGACGAGTTATAA 59.173 40.000 0.00 0.00 0.00 0.98
864 895 1.098050 GATTGCTCGCACATCCCTTT 58.902 50.000 0.00 0.00 0.00 3.11
940 972 7.896496 TCTCTTCTAGACATTTTAACCCTCTCT 59.104 37.037 0.00 0.00 0.00 3.10
978 1010 4.078863 AGGATAGCCTAGAAACAGAGGAGT 60.079 45.833 0.00 0.00 44.74 3.85
1068 1100 0.117541 TTGGTAGTAGTGGAGGGCCA 59.882 55.000 6.18 0.00 43.47 5.36
1087 1119 3.064324 GCGGGGCATGCAAGTTCT 61.064 61.111 21.36 0.00 0.00 3.01
1141 1173 2.418746 GCACCTTATTTCGGCTCAGAGA 60.419 50.000 0.00 0.00 0.00 3.10
1203 1235 3.193267 GTGCCAGCAATGTTTCCAAGATA 59.807 43.478 0.00 0.00 0.00 1.98
1269 1301 5.764686 CACTATATGTTATGAGGCAAAGGCA 59.235 40.000 0.00 0.00 43.71 4.75
1311 1343 0.457853 GCTGTGTCGGCGACATCTTA 60.458 55.000 40.61 26.14 44.63 2.10
1354 1386 5.266733 TGTATGAACACCCGGAATACTAC 57.733 43.478 0.73 0.00 0.00 2.73
1422 1454 3.882888 TGGCGGATATTGAATTGGTTCTC 59.117 43.478 0.00 0.00 35.33 2.87
1476 1508 4.162651 AGTTCTGATTTGGCCTTTTGGAT 58.837 39.130 3.32 0.00 44.07 3.41
1525 1557 3.769300 GAGTGGGCCTCCATTTTTAACAT 59.231 43.478 4.53 0.00 46.09 2.71
1531 1563 6.179756 GGGCCTCCATTTTTAACATGAAAAT 58.820 36.000 0.84 0.00 37.22 1.82
1545 1577 5.846203 ACATGAAAATCCAACAAGTCAAGG 58.154 37.500 0.00 0.00 0.00 3.61
1686 1718 8.252417 ACATGATATGTAGTTTGTTGGTACGTA 58.748 33.333 0.00 0.00 42.78 3.57
1753 1786 2.039746 CACACCAACAAGGGACATAGGA 59.960 50.000 0.00 0.00 43.89 2.94
1831 1864 2.315155 AGTGGTAGACAGATACCCACCT 59.685 50.000 0.00 0.00 43.99 4.00
1961 1994 2.670905 TGCGATGTGAAGTTTGTATCCG 59.329 45.455 0.00 0.00 0.00 4.18
2002 2035 3.624326 TGCTCTTTCATGGTTTTGTCG 57.376 42.857 0.00 0.00 0.00 4.35
2026 2059 8.897752 TCGTGATTGATATATTGATCGATCTCT 58.102 33.333 25.02 14.71 43.24 3.10
2123 2156 4.992511 TTTTCCGTCCCCGCCGTG 62.993 66.667 0.00 0.00 0.00 4.94
2160 2193 6.459066 CACTGAGTTCTCCATTTCTGAACTA 58.541 40.000 7.46 0.00 46.85 2.24
2188 2221 0.250553 GTCCAATGTCCCGAACACCA 60.251 55.000 0.00 0.00 41.75 4.17
2190 2223 0.810648 CCAATGTCCCGAACACCATG 59.189 55.000 0.00 0.00 41.75 3.66
2258 2291 3.255395 CAGCAACACCAACAACCATATGA 59.745 43.478 3.65 0.00 0.00 2.15
2279 2312 1.159664 AGACAGGGGAAGGCTCTGT 59.840 57.895 6.30 6.30 43.50 3.41
2285 2318 1.049289 GGGGAAGGCTCTGTCGGTAT 61.049 60.000 0.00 0.00 0.00 2.73
2348 2381 0.324738 AGGGAGCTCTTGGATCGACA 60.325 55.000 14.64 0.00 0.00 4.35
2352 2385 1.474478 GAGCTCTTGGATCGACAGTCA 59.526 52.381 6.43 0.00 0.00 3.41
2379 2412 1.074775 GACACCCCAGCAACCATCA 59.925 57.895 0.00 0.00 0.00 3.07
2463 2496 5.907207 AGTATACATTCATTGTGCGAGAGT 58.093 37.500 5.50 0.00 39.48 3.24
2556 2591 7.201435 CCGCTTTTTGCTTATCAGTTTTATTCC 60.201 37.037 0.00 0.00 40.11 3.01
2800 2835 7.660112 TGTGAATACAAATTTTGCAGAGACAT 58.340 30.769 9.04 0.00 32.88 3.06
2829 2864 8.212995 TGTGAGCTCCATATCTTGATTCAATTA 58.787 33.333 12.15 0.00 0.00 1.40
2858 2893 9.897744 GTGACATTTTGAGTCAATAAAGAATGA 57.102 29.630 24.16 8.49 46.50 2.57
2944 2979 3.505464 AAGTGATAGTTTCGTCCTCCG 57.495 47.619 0.00 0.00 38.13 4.63
2956 2991 4.261578 TCGTCCTCCGTTAGAAAACAAT 57.738 40.909 0.00 0.00 35.16 2.71
3035 3070 6.169094 TCTTCAAAAGATTTGCACCAACAAA 58.831 32.000 0.00 0.00 43.27 2.83
3038 3073 4.486125 AAAGATTTGCACCAACAAAGGT 57.514 36.364 0.00 0.00 42.45 3.50
3163 3198 4.320275 CCGTAAAAGAAGGAGAAGTTTGGC 60.320 45.833 0.00 0.00 0.00 4.52
3176 3211 3.821421 AGTTTGGCCTCCTATTACTCG 57.179 47.619 3.32 0.00 0.00 4.18
3177 3212 3.371965 AGTTTGGCCTCCTATTACTCGA 58.628 45.455 3.32 0.00 0.00 4.04
3193 3228 3.194861 ACTCGATCTCTTCTCTGTCTCG 58.805 50.000 0.00 0.00 0.00 4.04
3208 3243 2.567169 TGTCTCGATGGTTGAAGGTCAT 59.433 45.455 0.00 0.00 0.00 3.06
3232 3267 4.305539 ACACATGATTGGGATGAAGACA 57.694 40.909 0.00 0.00 0.00 3.41
3244 3279 3.314635 GGATGAAGACACATCTCCAATGC 59.685 47.826 0.00 0.00 44.02 3.56
3252 3288 3.466791 ATCTCCAATGCGCTCCCCG 62.467 63.158 9.73 0.00 40.75 5.73
3274 3310 2.406616 CGCACCCATGTGGCCTAAC 61.407 63.158 3.32 0.00 42.99 2.34
3276 3312 1.315257 GCACCCATGTGGCCTAACAG 61.315 60.000 3.32 0.00 42.99 3.16
3291 3327 4.141711 GCCTAACAGGACAATCCACATAGA 60.142 45.833 0.00 0.00 39.61 1.98
3296 3332 7.781324 AACAGGACAATCCACATAGATTTTT 57.219 32.000 0.00 0.00 39.61 1.94
3320 3356 1.032114 CCAACGGGCTCCCTCATTTC 61.032 60.000 3.11 0.00 0.00 2.17
3351 3387 3.974719 TGTGCAAAATCCATTAGCCCTA 58.025 40.909 0.00 0.00 0.00 3.53
3360 3396 8.869109 CAAAATCCATTAGCCCTATTCCAAATA 58.131 33.333 0.00 0.00 0.00 1.40
3361 3397 8.422577 AAATCCATTAGCCCTATTCCAAATAC 57.577 34.615 0.00 0.00 0.00 1.89
3366 3402 2.447047 AGCCCTATTCCAAATACAGGGG 59.553 50.000 7.07 0.00 45.26 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 114 7.004555 AGGGAAATTACCAAAAAGATGGAAC 57.995 36.000 0.00 0.00 43.54 3.62
117 134 2.362397 GCATGAACTACATCGAGAGGGA 59.638 50.000 0.00 0.00 37.07 4.20
215 232 8.019669 GTGATATGTCCATTTTGCATCACTATC 58.980 37.037 10.66 0.00 38.37 2.08
216 233 7.040201 GGTGATATGTCCATTTTGCATCACTAT 60.040 37.037 14.84 0.00 40.25 2.12
268 285 1.828595 TGATGGCTCCAAACGCTAGTA 59.171 47.619 0.00 0.00 0.00 1.82
270 287 1.134699 TCTGATGGCTCCAAACGCTAG 60.135 52.381 0.00 0.00 0.00 3.42
353 371 6.686632 GCATTTCATTAGAGTAGTAGCCCACT 60.687 42.308 0.00 0.00 41.62 4.00
364 382 9.155975 GATAATGTATCGGCATTTCATTAGAGT 57.844 33.333 6.21 0.00 39.50 3.24
395 413 6.814954 TCATATCCTTGAAGCTTAAGGTCT 57.185 37.500 22.97 17.30 44.06 3.85
400 418 8.150945 GTGAGGTATCATATCCTTGAAGCTTAA 58.849 37.037 0.00 0.00 37.87 1.85
401 419 7.523873 CGTGAGGTATCATATCCTTGAAGCTTA 60.524 40.741 0.00 0.00 37.87 3.09
412 430 5.316327 TGAGCATCGTGAGGTATCATATC 57.684 43.478 0.00 0.00 38.61 1.63
426 444 3.369385 GGCAAATTCAAGATGAGCATCG 58.631 45.455 4.93 0.00 42.48 3.84
442 460 5.245751 TCATCAATGCTCTAAAAAGGGCAAA 59.754 36.000 3.73 0.00 38.21 3.68
453 471 5.129980 AGTGGAGATGTTCATCAATGCTCTA 59.870 40.000 14.05 0.00 0.00 2.43
529 547 6.901081 TGTCTATGTCAGGGTGATATACAG 57.099 41.667 0.00 0.00 30.70 2.74
532 550 9.822727 TTTCTATGTCTATGTCAGGGTGATATA 57.177 33.333 0.00 0.00 30.70 0.86
542 560 5.894298 ATGGGCTTTCTATGTCTATGTCA 57.106 39.130 0.00 0.00 0.00 3.58
559 577 8.671384 TTAGTGAACTAACACATATTATGGGC 57.329 34.615 5.82 0.00 42.45 5.36
566 584 5.416083 TGCGCTTAGTGAACTAACACATAT 58.584 37.500 9.73 0.00 42.45 1.78
586 604 2.712057 AAAAAGCAAGACTGGATGCG 57.288 45.000 0.00 0.00 46.98 4.73
603 621 6.600032 TGTGTGAAGCTAACTAACTGGAAAAA 59.400 34.615 0.00 0.00 0.00 1.94
604 622 6.116806 TGTGTGAAGCTAACTAACTGGAAAA 58.883 36.000 0.00 0.00 0.00 2.29
605 623 5.676552 TGTGTGAAGCTAACTAACTGGAAA 58.323 37.500 0.00 0.00 0.00 3.13
608 626 4.883083 TCTGTGTGAAGCTAACTAACTGG 58.117 43.478 0.00 0.00 0.00 4.00
613 631 9.628500 TCTAGAATATCTGTGTGAAGCTAACTA 57.372 33.333 0.00 0.00 0.00 2.24
629 647 9.965824 CTTCTCTTCTTGAAGGTCTAGAATATC 57.034 37.037 10.08 0.00 37.54 1.63
864 895 8.678593 TTTATGGTATGTAAACACACACAAGA 57.321 30.769 0.00 0.00 0.00 3.02
962 994 5.360429 GGTACCTAACTCCTCTGTTTCTAGG 59.640 48.000 4.06 0.00 32.39 3.02
971 1003 3.275228 AGGGAATGGTACCTAACTCCTCT 59.725 47.826 14.36 9.49 34.71 3.69
978 1010 3.985127 TCTCGAAGGGAATGGTACCTAA 58.015 45.455 14.36 0.00 35.64 2.69
1013 1045 1.595109 CTGACGCTTGCACTGGTCA 60.595 57.895 11.17 11.17 37.77 4.02
1041 1073 1.485066 CCACTACTACCAATCGGCCTT 59.515 52.381 0.00 0.00 34.57 4.35
1049 1081 0.117541 TGGCCCTCCACTACTACCAA 59.882 55.000 0.00 0.00 37.47 3.67
1141 1173 0.178990 GTGAAGTGCTCCACCCCTTT 60.179 55.000 0.00 0.00 34.49 3.11
1203 1235 0.927029 GGGGAGGGGCTTGATTAAGT 59.073 55.000 0.00 0.00 36.27 2.24
1249 1281 3.565482 CGTGCCTTTGCCTCATAACATAT 59.435 43.478 0.00 0.00 36.33 1.78
1269 1301 2.043248 ATAGGGTCACGGAGGCGT 60.043 61.111 0.00 0.00 0.00 5.68
1354 1386 8.596271 TGACAAAGAGAGATAGAGAGTATACG 57.404 38.462 0.00 0.00 0.00 3.06
1400 1432 3.882888 GAGAACCAATTCAATATCCGCCA 59.117 43.478 0.00 0.00 37.29 5.69
1401 1433 4.023707 CAGAGAACCAATTCAATATCCGCC 60.024 45.833 0.00 0.00 37.29 6.13
1422 1454 3.316029 TCACATCAAAGTGCACTTTCCAG 59.684 43.478 35.97 28.41 43.72 3.86
1465 1497 2.290367 GCACAAACAAATCCAAAAGGCC 59.710 45.455 0.00 0.00 0.00 5.19
1476 1508 3.118811 CCTTGGAAGAAGGCACAAACAAA 60.119 43.478 0.00 0.00 0.00 2.83
1505 1537 3.513515 TCATGTTAAAAATGGAGGCCCAC 59.486 43.478 0.00 0.00 46.98 4.61
1519 1551 7.925483 CCTTGACTTGTTGGATTTTCATGTTAA 59.075 33.333 0.00 0.00 0.00 2.01
1525 1557 6.537453 TTTCCTTGACTTGTTGGATTTTCA 57.463 33.333 0.00 0.00 0.00 2.69
1531 1563 6.836527 TCCTTTAATTTCCTTGACTTGTTGGA 59.163 34.615 0.00 0.00 0.00 3.53
1545 1577 9.449719 TCCTTCTACATTGACTCCTTTAATTTC 57.550 33.333 0.00 0.00 0.00 2.17
1660 1692 7.101054 ACGTACCAACAAACTACATATCATGT 58.899 34.615 0.00 0.00 46.92 3.21
1734 1767 2.618045 GGTCCTATGTCCCTTGTTGGTG 60.618 54.545 0.00 0.00 0.00 4.17
1753 1786 5.667626 ACATGTTAGGATGTGAGGATTAGGT 59.332 40.000 0.00 0.00 35.17 3.08
1831 1864 7.716799 ATGTATCCAATAAAAGAGTTTGGCA 57.283 32.000 0.00 0.00 39.79 4.92
1866 1899 4.744570 TGAAATGTGCAAAAACCGTGTTA 58.255 34.783 0.00 0.00 0.00 2.41
2123 2156 1.378911 TCAGTGGTCATGGCCATGC 60.379 57.895 36.47 29.46 41.08 4.06
2128 2161 1.677217 GGAGAACTCAGTGGTCATGGC 60.677 57.143 4.23 0.00 34.06 4.40
2214 2247 1.153086 GAAGGCCCACTGCATCGAT 60.153 57.895 0.00 0.00 43.89 3.59
2258 2291 1.920835 GAGCCTTCCCCTGTCTGGT 60.921 63.158 0.00 0.00 0.00 4.00
2279 2312 1.903860 AGTTGGTGTTGCCTATACCGA 59.096 47.619 0.00 0.00 37.29 4.69
2285 2318 2.513753 CATTGGAGTTGGTGTTGCCTA 58.486 47.619 0.00 0.00 38.35 3.93
2348 2381 0.608640 GGGTGTCGATCCTGTTGACT 59.391 55.000 8.99 0.00 41.16 3.41
2352 2385 1.983224 CTGGGGTGTCGATCCTGTT 59.017 57.895 8.99 0.00 0.00 3.16
2442 2475 7.039313 ACTACTCTCGCACAATGAATGTATA 57.961 36.000 0.00 0.00 41.46 1.47
2457 2490 6.893958 AAAAGCAATCATGTACTACTCTCG 57.106 37.500 0.00 0.00 0.00 4.04
2463 2496 9.665719 TCTCACATTAAAAGCAATCATGTACTA 57.334 29.630 0.00 0.00 0.00 1.82
2508 2543 4.385977 GGGTGGTGCCTATTAACTACCATT 60.386 45.833 10.02 0.00 46.63 3.16
2556 2591 2.633481 GCACCCCTCCTACCATAGTAAG 59.367 54.545 0.00 0.00 0.00 2.34
2620 2655 3.618690 AACTCCCTCCAATCTTCTTCG 57.381 47.619 0.00 0.00 0.00 3.79
2726 2761 3.758554 AGTAGCACAATGGCCAAAAGTAG 59.241 43.478 10.96 5.25 0.00 2.57
2728 2763 2.597455 AGTAGCACAATGGCCAAAAGT 58.403 42.857 10.96 5.79 0.00 2.66
2800 2835 6.324770 TGAATCAAGATATGGAGCTCACACTA 59.675 38.462 17.19 1.21 0.00 2.74
2859 2894 9.460019 TGGATGACATGTATGTTTCAATAAAGA 57.540 29.630 0.00 0.00 41.95 2.52
2903 2938 8.750298 TCACTTTATAGTAGCAGGGATATTAGC 58.250 37.037 0.00 0.00 31.96 3.09
2956 2991 4.651503 TGGTTTTGCCAGGATTTTCTGTTA 59.348 37.500 0.00 0.00 43.61 2.41
3163 3198 6.371548 CAGAGAAGAGATCGAGTAATAGGAGG 59.628 46.154 0.00 0.00 0.00 4.30
3169 3204 5.465390 CGAGACAGAGAAGAGATCGAGTAAT 59.535 44.000 0.00 0.00 0.00 1.89
3176 3211 3.882888 ACCATCGAGACAGAGAAGAGATC 59.117 47.826 0.00 0.00 0.00 2.75
3177 3212 3.897239 ACCATCGAGACAGAGAAGAGAT 58.103 45.455 0.00 0.00 0.00 2.75
3193 3228 3.820467 TGTGTTCATGACCTTCAACCATC 59.180 43.478 0.00 0.00 0.00 3.51
3208 3243 4.701651 GTCTTCATCCCAATCATGTGTTCA 59.298 41.667 0.00 0.00 0.00 3.18
3221 3256 3.634397 TTGGAGATGTGTCTTCATCCC 57.366 47.619 3.52 5.54 39.71 3.85
3232 3267 1.153086 GGGAGCGCATTGGAGATGT 60.153 57.895 11.47 0.00 0.00 3.06
3252 3288 3.747976 GCCACATGGGTGCGGAAC 61.748 66.667 0.00 0.00 43.88 3.62
3263 3299 2.357154 GGATTGTCCTGTTAGGCCACAT 60.357 50.000 5.01 0.00 34.61 3.21
3274 3310 6.377996 TGGAAAAATCTATGTGGATTGTCCTG 59.622 38.462 16.27 0.00 39.24 3.86
3276 3312 6.773976 TGGAAAAATCTATGTGGATTGTCC 57.226 37.500 11.82 11.82 39.11 4.02
3291 3327 1.824852 GAGCCCGTTGGATGGAAAAAT 59.175 47.619 0.00 0.00 0.00 1.82
3296 3332 3.407967 GGGAGCCCGTTGGATGGA 61.408 66.667 0.00 0.00 0.00 3.41
3351 3387 3.474920 ACTCCTCCCCTGTATTTGGAAT 58.525 45.455 0.00 0.00 0.00 3.01
3360 3396 1.027815 ATTCCCTACTCCTCCCCTGT 58.972 55.000 0.00 0.00 0.00 4.00
3361 3397 1.221781 AGATTCCCTACTCCTCCCCTG 59.778 57.143 0.00 0.00 0.00 4.45
3366 3402 2.962421 CAGTCCAGATTCCCTACTCCTC 59.038 54.545 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.