Multiple sequence alignment - TraesCS7B01G194500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G194500 chr7B 100.000 4983 0 0 1 4983 334320893 334325875 0.000000e+00 9202.0
1 TraesCS7B01G194500 chr7B 97.975 395 7 1 2606 2999 365276141 365276535 0.000000e+00 684.0
2 TraesCS7B01G194500 chr7B 77.739 858 172 18 1325 2168 533614607 533613755 4.450000e-140 508.0
3 TraesCS7B01G194500 chr7B 98.413 252 4 0 3080 3331 365276532 365276783 1.270000e-120 444.0
4 TraesCS7B01G194500 chr7B 91.667 108 8 1 2997 3103 610847158 610847265 1.120000e-31 148.0
5 TraesCS7B01G194500 chr7D 95.019 2309 74 24 528 2825 189429433 189431711 0.000000e+00 3589.0
6 TraesCS7B01G194500 chr7D 92.057 1045 59 9 3080 4121 189432031 189433054 0.000000e+00 1448.0
7 TraesCS7B01G194500 chr7D 77.389 858 175 19 1325 2168 505616503 505615651 4.480000e-135 492.0
8 TraesCS7B01G194500 chr7D 87.940 398 18 8 4117 4485 189435816 189436212 4.580000e-120 442.0
9 TraesCS7B01G194500 chr7D 87.611 339 39 3 1 336 189428711 189429049 1.680000e-104 390.0
10 TraesCS7B01G194500 chr7D 90.066 151 14 1 2850 3000 189431881 189432030 1.420000e-45 195.0
11 TraesCS7B01G194500 chr7D 98.901 91 1 0 2996 3086 163634725 163634815 3.990000e-36 163.0
12 TraesCS7B01G194500 chr7A 95.491 1730 34 13 593 2311 194325375 194323679 0.000000e+00 2723.0
13 TraesCS7B01G194500 chr7A 91.934 1277 54 19 3356 4605 194322496 194321242 0.000000e+00 1742.0
14 TraesCS7B01G194500 chr7A 92.898 521 18 9 2318 2825 194323641 194323127 0.000000e+00 739.0
15 TraesCS7B01G194500 chr7A 77.984 863 167 21 1325 2168 573128270 573127412 2.060000e-143 520.0
16 TraesCS7B01G194500 chr7A 87.870 338 39 2 1 336 194326526 194326189 3.620000e-106 396.0
17 TraesCS7B01G194500 chr7A 87.544 281 31 4 3080 3358 194322807 194322529 6.220000e-84 322.0
18 TraesCS7B01G194500 chr7A 92.414 145 10 1 2856 3000 194322951 194322808 6.540000e-49 206.0
19 TraesCS7B01G194500 chr6D 85.957 883 118 6 1324 2205 363597029 363596152 0.000000e+00 939.0
20 TraesCS7B01G194500 chr6A 85.438 879 123 5 1324 2201 504624712 504623838 0.000000e+00 909.0
21 TraesCS7B01G194500 chr6B 84.938 883 127 6 1324 2205 548384261 548383384 0.000000e+00 889.0
22 TraesCS7B01G194500 chr6B 96.809 94 3 0 2998 3091 357123703 357123610 1.860000e-34 158.0
23 TraesCS7B01G194500 chr6B 92.523 107 6 2 2985 3090 46919863 46919968 8.640000e-33 152.0
24 TraesCS7B01G194500 chr3B 98.987 395 3 1 2606 2999 824084343 824084737 0.000000e+00 706.0
25 TraesCS7B01G194500 chr3B 98.810 252 3 0 3080 3331 824084734 824084985 2.740000e-122 449.0
26 TraesCS7B01G194500 chr3B 88.889 45 4 1 4673 4717 789060933 789060890 3.000000e-03 54.7
27 TraesCS7B01G194500 chr2B 98.889 90 1 0 2998 3087 13713019 13713108 1.440000e-35 161.0
28 TraesCS7B01G194500 chr2A 98.889 90 1 0 2996 3085 622029586 622029675 1.440000e-35 161.0
29 TraesCS7B01G194500 chr2A 83.333 72 8 4 4885 4956 10632051 10632118 4.160000e-06 63.9
30 TraesCS7B01G194500 chr2A 92.683 41 0 3 4934 4972 34500835 34500796 6.970000e-04 56.5
31 TraesCS7B01G194500 chr3A 92.661 109 3 5 2977 3084 51753225 51753329 8.640000e-33 152.0
32 TraesCS7B01G194500 chr2D 93.269 104 4 3 2998 3100 325745369 325745470 3.110000e-32 150.0
33 TraesCS7B01G194500 chr2D 75.109 229 36 18 4653 4866 373981688 373981466 2.470000e-13 87.9
34 TraesCS7B01G194500 chr2D 97.059 34 0 1 4934 4967 32282421 32282453 6.970000e-04 56.5
35 TraesCS7B01G194500 chr5A 96.591 88 3 0 2998 3085 483717191 483717278 4.020000e-31 147.0
36 TraesCS7B01G194500 chr5B 85.714 91 12 1 4628 4718 684970390 684970301 1.480000e-15 95.3
37 TraesCS7B01G194500 chr4B 77.570 107 20 2 4850 4955 441319653 441319756 1.500000e-05 62.1
38 TraesCS7B01G194500 chr5D 96.875 32 1 0 4928 4959 549861681 549861712 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G194500 chr7B 334320893 334325875 4982 False 9202.000000 9202 100.0000 1 4983 1 chr7B.!!$F1 4982
1 TraesCS7B01G194500 chr7B 365276141 365276783 642 False 564.000000 684 98.1940 2606 3331 2 chr7B.!!$F3 725
2 TraesCS7B01G194500 chr7B 533613755 533614607 852 True 508.000000 508 77.7390 1325 2168 1 chr7B.!!$R1 843
3 TraesCS7B01G194500 chr7D 189428711 189436212 7501 False 1212.800000 3589 90.5386 1 4485 5 chr7D.!!$F2 4484
4 TraesCS7B01G194500 chr7D 505615651 505616503 852 True 492.000000 492 77.3890 1325 2168 1 chr7D.!!$R1 843
5 TraesCS7B01G194500 chr7A 194321242 194326526 5284 True 1021.333333 2723 91.3585 1 4605 6 chr7A.!!$R2 4604
6 TraesCS7B01G194500 chr7A 573127412 573128270 858 True 520.000000 520 77.9840 1325 2168 1 chr7A.!!$R1 843
7 TraesCS7B01G194500 chr6D 363596152 363597029 877 True 939.000000 939 85.9570 1324 2205 1 chr6D.!!$R1 881
8 TraesCS7B01G194500 chr6A 504623838 504624712 874 True 909.000000 909 85.4380 1324 2201 1 chr6A.!!$R1 877
9 TraesCS7B01G194500 chr6B 548383384 548384261 877 True 889.000000 889 84.9380 1324 2205 1 chr6B.!!$R2 881
10 TraesCS7B01G194500 chr3B 824084343 824084985 642 False 577.500000 706 98.8985 2606 3331 2 chr3B.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.100682 GGCTACAACGATCTCGAGCA 59.899 55.000 7.81 0.0 43.02 4.26 F
466 591 0.177141 GTATGGCGTTGTGGAGGCTA 59.823 55.000 0.00 0.0 39.10 3.93 F
764 1405 0.902531 TTCTTCCGCCGATTTCTCCT 59.097 50.000 0.00 0.0 0.00 3.69 F
1244 1889 1.066143 CACCACCGCAGTATCCTTCTT 60.066 52.381 0.00 0.0 0.00 2.52 F
3012 3865 0.406750 TGAGTACTCCCTCCGTTCCA 59.593 55.000 20.11 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1244 1889 1.112916 TCTGTCGGCTGTGGAGTTGA 61.113 55.000 0.00 0.00 0.00 3.18 R
1776 2439 1.148157 CGCTGATGTTGCCGTAGAGG 61.148 60.000 0.00 0.00 44.97 3.69 R
2398 3092 1.808945 CAAATGGACAGTGACTGGAGC 59.191 52.381 17.92 5.73 35.51 4.70 R
3067 3920 1.001633 GCAACTACTTCCTCCGTTCCA 59.998 52.381 0.00 0.00 0.00 3.53 R
4638 8335 0.034477 GGCCCAAAAGGAGGATCGAA 60.034 55.000 0.00 0.00 38.24 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.209838 ACATGGCTACAACGATCTCG 57.790 50.000 0.00 0.00 46.33 4.04
39 40 1.749063 ACATGGCTACAACGATCTCGA 59.251 47.619 6.60 0.00 43.02 4.04
42 43 0.100682 GGCTACAACGATCTCGAGCA 59.899 55.000 7.81 0.00 43.02 4.26
47 48 0.851495 CAACGATCTCGAGCAGATGC 59.149 55.000 7.81 0.00 42.48 3.91
57 58 1.362768 GAGCAGATGCACGACAATGA 58.637 50.000 7.68 0.00 45.16 2.57
59 60 2.353889 GAGCAGATGCACGACAATGATT 59.646 45.455 7.68 0.00 45.16 2.57
77 78 2.750237 GTGGTGATCCAACCCCGC 60.750 66.667 0.00 0.00 46.15 6.13
81 82 2.682136 TGATCCAACCCCGCTCGA 60.682 61.111 0.00 0.00 0.00 4.04
89 90 1.672854 AACCCCGCTCGATCGAATGA 61.673 55.000 19.92 0.00 0.00 2.57
95 96 1.600413 CGCTCGATCGAATGATGGTGA 60.600 52.381 19.92 0.00 34.09 4.02
96 97 1.789464 GCTCGATCGAATGATGGTGAC 59.211 52.381 19.92 0.00 34.09 3.67
97 98 2.398498 CTCGATCGAATGATGGTGACC 58.602 52.381 19.92 0.00 34.09 4.02
105 106 3.314357 CGAATGATGGTGACCGTAGACTA 59.686 47.826 0.00 0.00 0.00 2.59
117 118 6.201806 GTGACCGTAGACTATACTACAACGAT 59.798 42.308 0.00 0.00 41.70 3.73
124 125 9.703892 GTAGACTATACTACAACGATCTCCTAA 57.296 37.037 0.00 0.00 41.39 2.69
126 127 9.796180 AGACTATACTACAACGATCTCCTAAAT 57.204 33.333 0.00 0.00 0.00 1.40
130 131 8.693120 ATACTACAACGATCTCCTAAATCTCA 57.307 34.615 0.00 0.00 0.00 3.27
137 138 6.878317 ACGATCTCCTAAATCTCAATGACAA 58.122 36.000 0.00 0.00 0.00 3.18
138 139 6.983307 ACGATCTCCTAAATCTCAATGACAAG 59.017 38.462 0.00 0.00 0.00 3.16
173 176 4.354662 AGGTCTTCGAAGAGGGTTATCTT 58.645 43.478 27.70 8.19 42.23 2.40
218 221 5.298527 TCGACGATGAGATGTAAACTATGGT 59.701 40.000 0.00 0.00 0.00 3.55
219 222 5.977725 CGACGATGAGATGTAAACTATGGTT 59.022 40.000 0.00 0.00 37.24 3.67
242 245 2.894731 AGTCTTGACACAGAGGGATGA 58.105 47.619 3.49 0.00 0.00 2.92
245 248 5.026121 AGTCTTGACACAGAGGGATGATTA 58.974 41.667 3.49 0.00 0.00 1.75
254 257 1.625818 GAGGGATGATTATGGAGCGGT 59.374 52.381 0.00 0.00 0.00 5.68
255 258 2.832129 GAGGGATGATTATGGAGCGGTA 59.168 50.000 0.00 0.00 0.00 4.02
282 286 1.747355 GCACATTGCATGTAGCTCCTT 59.253 47.619 0.00 0.00 44.26 3.36
288 292 2.923121 TGCATGTAGCTCCTTTGATCC 58.077 47.619 0.00 0.00 45.94 3.36
311 315 2.632136 AAAAGTGGTGGCGACGACGA 62.632 55.000 12.29 0.00 42.66 4.20
342 384 1.337071 TCGAGGTGGTGCTATCGAATC 59.663 52.381 0.00 0.00 40.88 2.52
356 398 9.579768 GTGCTATCGAATCTGAGTTGATTATAT 57.420 33.333 12.58 0.00 36.86 0.86
360 402 8.903570 ATCGAATCTGAGTTGATTATATCGAC 57.096 34.615 2.10 0.00 42.79 4.20
361 403 7.871853 TCGAATCTGAGTTGATTATATCGACA 58.128 34.615 9.16 0.00 44.50 4.35
370 412 9.690434 GAGTTGATTATATCGACAACACTTTTC 57.310 33.333 14.42 2.39 44.50 2.29
382 424 6.072112 ACAACACTTTTCTTGCGTCATTAT 57.928 33.333 0.00 0.00 0.00 1.28
438 563 4.023739 AGGCGTTGTTGTTAAAGAACAC 57.976 40.909 1.65 0.00 45.29 3.32
444 569 5.155643 GTTGTTGTTAAAGAACACCGTTGT 58.844 37.500 1.65 0.00 45.29 3.32
449 574 2.600470 AAAGAACACCGTTGTCCGTA 57.400 45.000 0.00 0.00 33.55 4.02
464 589 2.461110 CGTATGGCGTTGTGGAGGC 61.461 63.158 0.00 0.00 38.40 4.70
466 591 0.177141 GTATGGCGTTGTGGAGGCTA 59.823 55.000 0.00 0.00 39.10 3.93
474 599 3.802329 GCGTTGTGGAGGCTATATGCTTA 60.802 47.826 0.00 0.00 42.39 3.09
477 602 6.163476 CGTTGTGGAGGCTATATGCTTATAA 58.837 40.000 0.00 0.00 42.39 0.98
482 607 6.763610 GTGGAGGCTATATGCTTATAATGTCC 59.236 42.308 0.00 10.81 42.39 4.02
491 616 6.605471 ATGCTTATAATGTCCGTATCCTCA 57.395 37.500 0.00 0.00 0.00 3.86
497 622 2.602257 TGTCCGTATCCTCATGCTTG 57.398 50.000 0.00 0.00 0.00 4.01
511 636 5.010719 CCTCATGCTTGATGCTCCATTTTAT 59.989 40.000 2.33 0.00 43.37 1.40
512 637 6.080648 TCATGCTTGATGCTCCATTTTATC 57.919 37.500 0.00 0.00 43.37 1.75
513 638 5.595133 TCATGCTTGATGCTCCATTTTATCA 59.405 36.000 0.00 0.00 43.37 2.15
514 639 5.509716 TGCTTGATGCTCCATTTTATCAG 57.490 39.130 0.00 0.00 43.37 2.90
515 640 4.951715 TGCTTGATGCTCCATTTTATCAGT 59.048 37.500 0.00 0.00 43.37 3.41
516 641 6.121590 TGCTTGATGCTCCATTTTATCAGTA 58.878 36.000 0.00 0.00 43.37 2.74
518 643 7.122501 TGCTTGATGCTCCATTTTATCAGTAAA 59.877 33.333 0.00 0.00 43.37 2.01
519 644 7.433425 GCTTGATGCTCCATTTTATCAGTAAAC 59.567 37.037 0.00 0.00 38.95 2.01
520 645 7.015226 TGATGCTCCATTTTATCAGTAAACG 57.985 36.000 0.00 0.00 29.82 3.60
521 646 6.597672 TGATGCTCCATTTTATCAGTAAACGT 59.402 34.615 0.00 0.00 29.82 3.99
524 649 6.653320 TGCTCCATTTTATCAGTAAACGTCTT 59.347 34.615 0.00 0.00 29.82 3.01
525 650 7.820386 TGCTCCATTTTATCAGTAAACGTCTTA 59.180 33.333 0.00 0.00 29.82 2.10
526 651 8.114905 GCTCCATTTTATCAGTAAACGTCTTAC 58.885 37.037 10.68 10.68 29.82 2.34
553 748 6.183360 GGACACGGAGGGAGTAGTAAATAAAT 60.183 42.308 0.00 0.00 0.00 1.40
554 749 6.579865 ACACGGAGGGAGTAGTAAATAAATG 58.420 40.000 0.00 0.00 0.00 2.32
556 751 7.046033 CACGGAGGGAGTAGTAAATAAATGTT 58.954 38.462 0.00 0.00 0.00 2.71
734 1375 1.261238 CCTCACCACCCTCTCACTCC 61.261 65.000 0.00 0.00 0.00 3.85
764 1405 0.902531 TTCTTCCGCCGATTTCTCCT 59.097 50.000 0.00 0.00 0.00 3.69
767 1408 0.902531 TTCCGCCGATTTCTCCTCTT 59.097 50.000 0.00 0.00 0.00 2.85
783 1424 2.286885 TTCCCCCATCCCCCACTC 60.287 66.667 0.00 0.00 0.00 3.51
1244 1889 1.066143 CACCACCGCAGTATCCTTCTT 60.066 52.381 0.00 0.00 0.00 2.52
1659 2322 1.887198 CTCCTCGTCCACGCCTATTAT 59.113 52.381 0.00 0.00 39.60 1.28
1668 2331 2.368875 CCACGCCTATTATTCCACCTCT 59.631 50.000 0.00 0.00 0.00 3.69
1776 2439 2.494530 CCTCTACTGCGGCTCCTCC 61.495 68.421 0.00 0.00 0.00 4.30
1836 2499 2.696759 GGCCTACCACGCGCATTTT 61.697 57.895 5.73 0.00 35.26 1.82
2212 2875 2.635915 TCGAGGTTTGCTTTCTTCCCTA 59.364 45.455 0.00 0.00 0.00 3.53
2219 2882 5.179533 GTTTGCTTTCTTCCCTACTCTAGG 58.820 45.833 0.00 0.00 45.81 3.02
2221 2884 2.103432 GCTTTCTTCCCTACTCTAGGCC 59.897 54.545 0.00 0.00 44.86 5.19
2224 2887 2.504905 TCTTCCCTACTCTAGGCCTCT 58.495 52.381 9.68 0.00 44.86 3.69
2225 2888 3.677888 TCTTCCCTACTCTAGGCCTCTA 58.322 50.000 9.68 0.00 44.86 2.43
2226 2889 3.395273 TCTTCCCTACTCTAGGCCTCTAC 59.605 52.174 9.68 0.00 44.86 2.59
2227 2890 2.064215 TCCCTACTCTAGGCCTCTACC 58.936 57.143 9.68 0.00 44.86 3.18
2228 2891 2.067386 CCCTACTCTAGGCCTCTACCT 58.933 57.143 9.68 0.00 44.86 3.08
2229 2892 2.447811 CCCTACTCTAGGCCTCTACCTT 59.552 54.545 9.68 0.00 44.86 3.50
2230 2893 3.499021 CCCTACTCTAGGCCTCTACCTTC 60.499 56.522 9.68 0.00 44.86 3.46
2231 2894 3.396611 CCTACTCTAGGCCTCTACCTTCT 59.603 52.174 9.68 0.00 41.50 2.85
2232 2895 3.588210 ACTCTAGGCCTCTACCTTCTC 57.412 52.381 9.68 0.00 41.50 2.87
2233 2896 2.176148 ACTCTAGGCCTCTACCTTCTCC 59.824 54.545 9.68 0.00 41.50 3.71
2234 2897 2.175931 CTCTAGGCCTCTACCTTCTCCA 59.824 54.545 9.68 0.00 41.50 3.86
2242 2905 5.083821 GCCTCTACCTTCTCCATCTATCTT 58.916 45.833 0.00 0.00 0.00 2.40
2355 3049 7.490962 CAAGATATCCTTGTTTACCGCATAA 57.509 36.000 0.00 0.00 45.52 1.90
2470 3164 2.821991 AGGTTGTGAGTCACACTAGC 57.178 50.000 25.43 20.09 44.47 3.42
3000 3853 4.999950 CAGCTTTGTCCATTTCTGAGTACT 59.000 41.667 0.00 0.00 0.00 2.73
3001 3854 5.121454 CAGCTTTGTCCATTTCTGAGTACTC 59.879 44.000 16.32 16.32 0.00 2.59
3002 3855 4.393371 GCTTTGTCCATTTCTGAGTACTCC 59.607 45.833 20.11 3.06 0.00 3.85
3003 3856 4.553330 TTGTCCATTTCTGAGTACTCCC 57.447 45.455 20.11 0.00 0.00 4.30
3004 3857 3.791320 TGTCCATTTCTGAGTACTCCCT 58.209 45.455 20.11 0.00 0.00 4.20
3005 3858 3.769844 TGTCCATTTCTGAGTACTCCCTC 59.230 47.826 20.11 0.00 0.00 4.30
3006 3859 3.133183 GTCCATTTCTGAGTACTCCCTCC 59.867 52.174 20.11 0.00 0.00 4.30
3007 3860 2.101582 CCATTTCTGAGTACTCCCTCCG 59.898 54.545 20.11 4.61 0.00 4.63
3008 3861 2.599408 TTTCTGAGTACTCCCTCCGT 57.401 50.000 20.11 0.00 0.00 4.69
3009 3862 2.599408 TTCTGAGTACTCCCTCCGTT 57.401 50.000 20.11 0.00 0.00 4.44
3010 3863 2.125773 TCTGAGTACTCCCTCCGTTC 57.874 55.000 20.11 0.00 0.00 3.95
3011 3864 1.104630 CTGAGTACTCCCTCCGTTCC 58.895 60.000 20.11 0.00 0.00 3.62
3012 3865 0.406750 TGAGTACTCCCTCCGTTCCA 59.593 55.000 20.11 0.00 0.00 3.53
3013 3866 1.203087 TGAGTACTCCCTCCGTTCCAA 60.203 52.381 20.11 0.00 0.00 3.53
3014 3867 1.897802 GAGTACTCCCTCCGTTCCAAA 59.102 52.381 12.13 0.00 0.00 3.28
3015 3868 2.301009 GAGTACTCCCTCCGTTCCAAAA 59.699 50.000 12.13 0.00 0.00 2.44
3016 3869 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3017 3870 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3018 3871 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3019 3872 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3020 3873 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3021 3874 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3022 3875 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3023 3876 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3024 3877 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3025 3878 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3026 3879 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3027 3880 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3028 3881 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3029 3882 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3030 3883 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3031 3884 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3032 3885 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3033 3886 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3034 3887 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3035 3888 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3036 3889 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
3037 3890 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
3038 3891 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3039 3892 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
3040 3893 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
3041 3894 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
3043 3896 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
3044 3897 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
3045 3898 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
3046 3899 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
3059 3912 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
3060 3913 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
3061 3914 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
3062 3915 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
3063 3916 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
3064 3917 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
3065 3918 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
3066 3919 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
3067 3920 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3068 3921 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3069 3922 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3070 3923 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3071 3924 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3072 3925 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3073 3926 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
3074 3927 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3075 3928 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3076 3929 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3077 3930 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3078 3931 4.383770 GGTCATCTATTTTGGAACGGAGGA 60.384 45.833 0.00 0.00 0.00 3.71
3222 4076 2.740981 CGGATTGCTGATGCTCTATTCC 59.259 50.000 0.00 0.00 40.48 3.01
3475 4365 2.543653 GGCACTGGCTGTTTTTAGTGTG 60.544 50.000 0.00 0.00 41.84 3.82
3508 4398 6.151817 GGATTATGGTCTCCATTTGATAAGCC 59.848 42.308 6.59 3.68 42.23 4.35
3542 4433 9.860898 GGTGCATCACTCTTTTAATTTATTTCT 57.139 29.630 0.00 0.00 34.40 2.52
3545 4436 9.357652 GCATCACTCTTTTAATTTATTTCTGCA 57.642 29.630 0.00 0.00 0.00 4.41
3561 4452 5.648178 TTCTGCATATTCACTTTGTGCAT 57.352 34.783 0.00 0.00 43.89 3.96
3567 4458 2.859526 TTCACTTTGTGCATGCGAAA 57.140 40.000 14.09 13.21 32.98 3.46
3793 4692 3.492482 CCCACAAAACCGAAAGCTTGATT 60.492 43.478 0.00 0.00 0.00 2.57
3886 4785 3.306919 CCAATGGCAGCAAGGTAATGTTT 60.307 43.478 0.00 0.00 0.00 2.83
3944 4843 1.676006 GTTTGGCGGGTGATATCAAGG 59.324 52.381 7.07 0.82 0.00 3.61
4052 4952 1.610886 GGTACCTTGGTCTCCAACTGC 60.611 57.143 4.06 0.00 38.75 4.40
4094 4994 4.994907 ACCAGTGTAAAGTTTTGGTTCC 57.005 40.909 4.20 0.00 38.98 3.62
4112 5012 2.768492 CCAGCATTCTTGGCTCCGC 61.768 63.158 0.00 0.00 40.23 5.54
4239 7910 5.929058 TCTCATCTCAATAGACAGCAGTT 57.071 39.130 0.00 0.00 33.57 3.16
4323 8015 4.646572 AGTTGTCAAGGATTCTTCTGGTC 58.353 43.478 0.00 0.00 0.00 4.02
4399 8095 3.190744 TGTAGGCTAGAGACGAGTGTTTG 59.809 47.826 0.00 0.00 0.00 2.93
4422 8119 5.479027 TGTAACTGTACCTAGTGCTGATTGA 59.521 40.000 0.00 0.00 0.00 2.57
4455 8152 3.348647 TGGAGCTGTAGCAAAGCATAA 57.651 42.857 6.65 0.00 43.37 1.90
4481 8178 3.511540 TCAAGATCTGGTCTGGTGTACTG 59.488 47.826 0.00 0.00 37.23 2.74
4485 8182 1.961394 TCTGGTCTGGTGTACTGTGTC 59.039 52.381 0.00 0.00 0.00 3.67
4486 8183 1.686587 CTGGTCTGGTGTACTGTGTCA 59.313 52.381 0.00 0.00 0.00 3.58
4491 8188 2.962421 TCTGGTGTACTGTGTCATGTGA 59.038 45.455 0.00 0.00 0.00 3.58
4492 8189 3.005791 TCTGGTGTACTGTGTCATGTGAG 59.994 47.826 0.00 0.00 0.00 3.51
4493 8190 2.069273 GGTGTACTGTGTCATGTGAGC 58.931 52.381 0.00 0.00 0.00 4.26
4494 8191 2.289072 GGTGTACTGTGTCATGTGAGCT 60.289 50.000 0.00 0.00 0.00 4.09
4495 8192 3.393800 GTGTACTGTGTCATGTGAGCTT 58.606 45.455 0.00 0.00 0.00 3.74
4496 8193 3.809832 GTGTACTGTGTCATGTGAGCTTT 59.190 43.478 0.00 0.00 0.00 3.51
4497 8194 4.273480 GTGTACTGTGTCATGTGAGCTTTT 59.727 41.667 0.00 0.00 0.00 2.27
4498 8195 4.881273 TGTACTGTGTCATGTGAGCTTTTT 59.119 37.500 0.00 0.00 0.00 1.94
4536 8233 5.562506 ATGTGAGCTGAATCAAGTTCATG 57.437 39.130 0.00 0.00 45.36 3.07
4553 8250 1.823169 ATGCACCGAACACCCGTAGT 61.823 55.000 0.00 0.00 0.00 2.73
4573 8270 3.138625 GGCTAGCCCATGAGCGTA 58.861 61.111 24.19 0.00 39.72 4.42
4587 8284 2.238646 TGAGCGTAATTTCCTGTGGGAT 59.761 45.455 0.00 0.00 41.87 3.85
4593 8290 2.725221 ATTTCCTGTGGGATGCTCTC 57.275 50.000 0.00 0.00 41.87 3.20
4605 8302 4.803426 GCTCTCTGTGTCGCCCGG 62.803 72.222 0.00 0.00 0.00 5.73
4606 8303 4.803426 CTCTCTGTGTCGCCCGGC 62.803 72.222 0.00 0.00 0.00 6.13
4617 8314 2.507452 GCCCGGCGTACCCTAATT 59.493 61.111 6.01 0.00 0.00 1.40
4618 8315 1.153107 GCCCGGCGTACCCTAATTT 60.153 57.895 6.01 0.00 0.00 1.82
4619 8316 1.162181 GCCCGGCGTACCCTAATTTC 61.162 60.000 6.01 0.00 0.00 2.17
4620 8317 0.877213 CCCGGCGTACCCTAATTTCG 60.877 60.000 6.01 0.00 0.00 3.46
4621 8318 1.493134 CCGGCGTACCCTAATTTCGC 61.493 60.000 6.01 0.00 44.95 4.70
4622 8319 1.814211 CGGCGTACCCTAATTTCGCG 61.814 60.000 0.00 0.00 46.30 5.87
4623 8320 1.274770 GCGTACCCTAATTTCGCGC 59.725 57.895 0.00 0.00 37.74 6.86
4624 8321 1.556484 CGTACCCTAATTTCGCGCG 59.444 57.895 26.76 26.76 0.00 6.86
4625 8322 1.141591 CGTACCCTAATTTCGCGCGT 61.142 55.000 30.98 13.33 0.00 6.01
4626 8323 0.299597 GTACCCTAATTTCGCGCGTG 59.700 55.000 30.98 14.79 0.00 5.34
4627 8324 1.422950 TACCCTAATTTCGCGCGTGC 61.423 55.000 30.98 11.84 37.91 5.34
4628 8325 2.022762 CCTAATTTCGCGCGTGCC 59.977 61.111 30.98 0.00 38.08 5.01
4629 8326 2.022762 CTAATTTCGCGCGTGCCC 59.977 61.111 30.98 0.00 38.08 5.36
4630 8327 3.449095 CTAATTTCGCGCGTGCCCC 62.449 63.158 30.98 0.00 38.08 5.80
4631 8328 3.961838 TAATTTCGCGCGTGCCCCT 62.962 57.895 30.98 12.86 38.08 4.79
4640 8337 4.785453 CGTGCCCCTCCAGCCTTC 62.785 72.222 0.00 0.00 0.00 3.46
4641 8338 4.785453 GTGCCCCTCCAGCCTTCG 62.785 72.222 0.00 0.00 0.00 3.79
4643 8340 3.483869 GCCCCTCCAGCCTTCGAT 61.484 66.667 0.00 0.00 0.00 3.59
4644 8341 2.825264 CCCCTCCAGCCTTCGATC 59.175 66.667 0.00 0.00 0.00 3.69
4645 8342 2.812619 CCCCTCCAGCCTTCGATCC 61.813 68.421 0.00 0.00 0.00 3.36
4646 8343 1.764054 CCCTCCAGCCTTCGATCCT 60.764 63.158 0.00 0.00 0.00 3.24
4647 8344 1.745264 CCTCCAGCCTTCGATCCTC 59.255 63.158 0.00 0.00 0.00 3.71
4648 8345 1.745264 CTCCAGCCTTCGATCCTCC 59.255 63.158 0.00 0.00 0.00 4.30
4649 8346 0.758685 CTCCAGCCTTCGATCCTCCT 60.759 60.000 0.00 0.00 0.00 3.69
4650 8347 0.325671 TCCAGCCTTCGATCCTCCTT 60.326 55.000 0.00 0.00 0.00 3.36
4651 8348 0.543749 CCAGCCTTCGATCCTCCTTT 59.456 55.000 0.00 0.00 0.00 3.11
4652 8349 1.065126 CCAGCCTTCGATCCTCCTTTT 60.065 52.381 0.00 0.00 0.00 2.27
4653 8350 2.012673 CAGCCTTCGATCCTCCTTTTG 58.987 52.381 0.00 0.00 0.00 2.44
4654 8351 1.065126 AGCCTTCGATCCTCCTTTTGG 60.065 52.381 0.00 0.00 42.21 3.28
4655 8352 2.019156 GCCTTCGATCCTCCTTTTGGG 61.019 57.143 0.00 0.00 40.87 4.12
4656 8353 1.383523 CTTCGATCCTCCTTTTGGGC 58.616 55.000 0.00 0.00 40.87 5.36
4657 8354 0.034477 TTCGATCCTCCTTTTGGGCC 60.034 55.000 0.00 0.00 40.87 5.80
4658 8355 1.819632 CGATCCTCCTTTTGGGCCG 60.820 63.158 0.00 0.00 40.87 6.13
4659 8356 1.453928 GATCCTCCTTTTGGGCCGG 60.454 63.158 0.00 0.00 40.87 6.13
4660 8357 3.662117 ATCCTCCTTTTGGGCCGGC 62.662 63.158 21.18 21.18 40.87 6.13
4661 8358 4.366684 CCTCCTTTTGGGCCGGCT 62.367 66.667 28.56 0.00 40.87 5.52
4662 8359 2.751837 CTCCTTTTGGGCCGGCTC 60.752 66.667 28.56 25.91 40.87 4.70
4663 8360 3.567579 CTCCTTTTGGGCCGGCTCA 62.568 63.158 29.29 29.29 40.87 4.26
4664 8361 2.362889 CCTTTTGGGCCGGCTCAT 60.363 61.111 33.55 0.00 35.46 2.90
4665 8362 1.984026 CCTTTTGGGCCGGCTCATT 60.984 57.895 33.55 0.00 35.46 2.57
4666 8363 1.512694 CTTTTGGGCCGGCTCATTC 59.487 57.895 33.55 11.06 0.00 2.67
4667 8364 1.228706 TTTTGGGCCGGCTCATTCA 60.229 52.632 33.55 13.73 0.00 2.57
4668 8365 1.531739 TTTTGGGCCGGCTCATTCAC 61.532 55.000 33.55 9.29 0.00 3.18
4669 8366 4.776322 TGGGCCGGCTCATTCACG 62.776 66.667 29.29 0.00 0.00 4.35
4676 8373 1.656652 CGGCTCATTCACGGATTTCT 58.343 50.000 0.00 0.00 0.00 2.52
4677 8374 2.009774 CGGCTCATTCACGGATTTCTT 58.990 47.619 0.00 0.00 0.00 2.52
4678 8375 2.030946 CGGCTCATTCACGGATTTCTTC 59.969 50.000 0.00 0.00 0.00 2.87
4679 8376 2.356069 GGCTCATTCACGGATTTCTTCC 59.644 50.000 0.00 0.00 41.59 3.46
4680 8377 2.356069 GCTCATTCACGGATTTCTTCCC 59.644 50.000 0.00 0.00 42.06 3.97
4681 8378 2.945668 CTCATTCACGGATTTCTTCCCC 59.054 50.000 0.00 0.00 42.06 4.81
4682 8379 2.307392 TCATTCACGGATTTCTTCCCCA 59.693 45.455 0.00 0.00 42.06 4.96
4683 8380 2.194201 TTCACGGATTTCTTCCCCAC 57.806 50.000 0.00 0.00 42.06 4.61
4684 8381 0.326927 TCACGGATTTCTTCCCCACC 59.673 55.000 0.00 0.00 42.06 4.61
4685 8382 1.024579 CACGGATTTCTTCCCCACCG 61.025 60.000 0.00 0.00 42.06 4.94
4686 8383 1.451387 CGGATTTCTTCCCCACCGG 60.451 63.158 0.00 0.00 42.06 5.28
4687 8384 1.689412 GGATTTCTTCCCCACCGGT 59.311 57.895 0.00 0.00 38.75 5.28
4688 8385 0.039180 GGATTTCTTCCCCACCGGTT 59.961 55.000 2.97 0.00 38.75 4.44
4689 8386 1.549265 GGATTTCTTCCCCACCGGTTT 60.549 52.381 2.97 0.00 38.75 3.27
4690 8387 2.244695 GATTTCTTCCCCACCGGTTTT 58.755 47.619 2.97 0.00 0.00 2.43
4691 8388 1.404843 TTTCTTCCCCACCGGTTTTG 58.595 50.000 2.97 0.00 0.00 2.44
4692 8389 0.468400 TTCTTCCCCACCGGTTTTGG 60.468 55.000 2.97 5.81 0.00 3.28
4697 8394 3.771978 CCACCGGTTTTGGGAAGG 58.228 61.111 2.97 0.00 0.00 3.46
4698 8395 1.152631 CCACCGGTTTTGGGAAGGT 60.153 57.895 2.97 0.00 35.24 3.50
4699 8396 0.757561 CCACCGGTTTTGGGAAGGTT 60.758 55.000 2.97 0.00 32.04 3.50
4700 8397 0.671796 CACCGGTTTTGGGAAGGTTC 59.328 55.000 2.97 0.00 32.04 3.62
4701 8398 0.259356 ACCGGTTTTGGGAAGGTTCA 59.741 50.000 0.00 0.00 0.00 3.18
4702 8399 1.342175 ACCGGTTTTGGGAAGGTTCAA 60.342 47.619 0.00 0.00 0.00 2.69
4703 8400 1.339929 CCGGTTTTGGGAAGGTTCAAG 59.660 52.381 0.00 0.00 0.00 3.02
4704 8401 2.303175 CGGTTTTGGGAAGGTTCAAGA 58.697 47.619 0.00 0.00 0.00 3.02
4705 8402 2.691011 CGGTTTTGGGAAGGTTCAAGAA 59.309 45.455 0.00 0.00 0.00 2.52
4706 8403 3.490249 CGGTTTTGGGAAGGTTCAAGAAC 60.490 47.826 4.39 4.39 40.45 3.01
4719 8416 4.709250 GTTCAAGAACCTTCTCTGAACCT 58.291 43.478 19.54 0.00 42.05 3.50
4720 8417 5.126779 GTTCAAGAACCTTCTCTGAACCTT 58.873 41.667 19.54 0.00 42.05 3.50
4721 8418 5.373812 TCAAGAACCTTCTCTGAACCTTT 57.626 39.130 0.00 0.00 36.28 3.11
4722 8419 5.755849 TCAAGAACCTTCTCTGAACCTTTT 58.244 37.500 0.00 0.00 36.28 2.27
4723 8420 6.187682 TCAAGAACCTTCTCTGAACCTTTTT 58.812 36.000 0.00 0.00 36.28 1.94
4747 8444 8.956533 TTTTCCTGTTTTCTATTTCCTTTTGG 57.043 30.769 0.00 0.00 42.21 3.28
4748 8445 7.669089 TTCCTGTTTTCTATTTCCTTTTGGT 57.331 32.000 0.00 0.00 41.38 3.67
4749 8446 7.669089 TCCTGTTTTCTATTTCCTTTTGGTT 57.331 32.000 0.00 0.00 41.38 3.67
4750 8447 8.084985 TCCTGTTTTCTATTTCCTTTTGGTTT 57.915 30.769 0.00 0.00 41.38 3.27
4751 8448 8.544622 TCCTGTTTTCTATTTCCTTTTGGTTTT 58.455 29.630 0.00 0.00 41.38 2.43
4752 8449 8.826710 CCTGTTTTCTATTTCCTTTTGGTTTTC 58.173 33.333 0.00 0.00 41.38 2.29
4753 8450 9.599866 CTGTTTTCTATTTCCTTTTGGTTTTCT 57.400 29.630 0.00 0.00 41.38 2.52
4754 8451 9.952030 TGTTTTCTATTTCCTTTTGGTTTTCTT 57.048 25.926 0.00 0.00 41.38 2.52
4826 8523 8.524870 AGCAAACATATTTCAAACTCATCAAC 57.475 30.769 0.00 0.00 0.00 3.18
4827 8524 8.143193 AGCAAACATATTTCAAACTCATCAACA 58.857 29.630 0.00 0.00 0.00 3.33
4828 8525 8.928733 GCAAACATATTTCAAACTCATCAACAT 58.071 29.630 0.00 0.00 0.00 2.71
4916 8613 8.560576 AATCGTGACTTGTTTTTGAAATAGTG 57.439 30.769 0.00 0.00 0.00 2.74
4917 8614 6.491394 TCGTGACTTGTTTTTGAAATAGTGG 58.509 36.000 0.00 0.00 0.00 4.00
4918 8615 6.316640 TCGTGACTTGTTTTTGAAATAGTGGA 59.683 34.615 0.00 0.00 0.00 4.02
4919 8616 6.413818 CGTGACTTGTTTTTGAAATAGTGGAC 59.586 38.462 0.00 0.00 0.00 4.02
4920 8617 7.254852 GTGACTTGTTTTTGAAATAGTGGACA 58.745 34.615 0.00 0.00 0.00 4.02
4921 8618 7.920682 GTGACTTGTTTTTGAAATAGTGGACAT 59.079 33.333 0.00 0.00 0.00 3.06
4922 8619 9.126151 TGACTTGTTTTTGAAATAGTGGACATA 57.874 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.362768 TCATTGTCGTGCATCTGCTC 58.637 50.000 3.53 0.00 42.66 4.26
39 40 2.034104 ATCATTGTCGTGCATCTGCT 57.966 45.000 3.53 0.00 42.66 4.24
42 43 2.421073 CCACAATCATTGTCGTGCATCT 59.579 45.455 0.00 0.00 43.23 2.90
52 53 3.119029 GGGTTGGATCACCACAATCATTG 60.119 47.826 4.72 0.00 46.80 2.82
53 54 3.099141 GGGTTGGATCACCACAATCATT 58.901 45.455 4.72 0.00 46.80 2.57
57 58 0.323360 CGGGGTTGGATCACCACAAT 60.323 55.000 5.40 0.00 46.80 2.71
59 60 2.753701 CGGGGTTGGATCACCACA 59.246 61.111 5.40 0.00 46.80 4.17
77 78 2.398498 GGTCACCATCATTCGATCGAG 58.602 52.381 18.54 8.00 0.00 4.04
81 82 2.956333 TCTACGGTCACCATCATTCGAT 59.044 45.455 0.00 0.00 0.00 3.59
89 90 5.933617 TGTAGTATAGTCTACGGTCACCAT 58.066 41.667 0.00 0.00 42.01 3.55
95 96 6.520272 AGATCGTTGTAGTATAGTCTACGGT 58.480 40.000 0.00 0.00 42.01 4.83
96 97 6.090628 GGAGATCGTTGTAGTATAGTCTACGG 59.909 46.154 0.00 0.00 42.01 4.02
97 98 6.867816 AGGAGATCGTTGTAGTATAGTCTACG 59.132 42.308 0.00 0.00 42.01 3.51
105 106 8.693120 TGAGATTTAGGAGATCGTTGTAGTAT 57.307 34.615 0.00 0.00 0.00 2.12
117 118 5.488919 ACCCTTGTCATTGAGATTTAGGAGA 59.511 40.000 2.40 0.00 0.00 3.71
124 125 3.074390 TGACCACCCTTGTCATTGAGATT 59.926 43.478 0.00 0.00 37.80 2.40
125 126 2.644299 TGACCACCCTTGTCATTGAGAT 59.356 45.455 0.00 0.00 37.80 2.75
126 127 2.054021 TGACCACCCTTGTCATTGAGA 58.946 47.619 0.00 0.00 37.80 3.27
130 131 3.745723 GGTGACCACCCTTGTCATT 57.254 52.632 7.95 0.00 45.68 2.57
218 221 5.306937 TCATCCCTCTGTGTCAAGACTTTAA 59.693 40.000 1.53 0.00 0.00 1.52
219 222 4.838423 TCATCCCTCTGTGTCAAGACTTTA 59.162 41.667 1.53 0.00 0.00 1.85
242 245 1.000163 CGACTGCTACCGCTCCATAAT 60.000 52.381 0.00 0.00 36.97 1.28
245 248 2.808315 CGACTGCTACCGCTCCAT 59.192 61.111 0.00 0.00 36.97 3.41
282 286 2.875296 CCACCACTTTTCCAGGATCAA 58.125 47.619 0.00 0.00 0.00 2.57
288 292 1.841663 CGTCGCCACCACTTTTCCAG 61.842 60.000 0.00 0.00 0.00 3.86
311 315 0.393077 CCACCTCGAAGTCACACCTT 59.607 55.000 0.00 0.00 0.00 3.50
342 384 7.993821 AGTGTTGTCGATATAATCAACTCAG 57.006 36.000 13.41 0.00 40.20 3.35
356 398 2.004017 ACGCAAGAAAAGTGTTGTCGA 58.996 42.857 0.00 0.00 43.62 4.20
359 401 4.370364 AATGACGCAAGAAAAGTGTTGT 57.630 36.364 0.00 0.00 43.62 3.32
360 402 8.673626 AATATAATGACGCAAGAAAAGTGTTG 57.326 30.769 0.00 0.00 43.62 3.33
382 424 6.288294 AGCGACACTGATGCCTTTAATAATA 58.712 36.000 0.00 0.00 0.00 0.98
449 574 1.128200 TATAGCCTCCACAACGCCAT 58.872 50.000 0.00 0.00 0.00 4.40
464 589 9.900710 GAGGATACGGACATTATAAGCATATAG 57.099 37.037 0.00 0.00 46.39 1.31
466 591 8.306313 TGAGGATACGGACATTATAAGCATAT 57.694 34.615 0.00 0.00 46.39 1.78
474 599 5.012046 TCAAGCATGAGGATACGGACATTAT 59.988 40.000 0.00 0.00 46.39 1.28
477 602 2.700371 TCAAGCATGAGGATACGGACAT 59.300 45.455 0.00 0.00 46.39 3.06
482 607 6.828756 TGGAGCATCAAGCATGAGGATACG 62.829 50.000 7.91 0.00 39.40 3.06
497 622 7.011482 AGACGTTTACTGATAAAATGGAGCATC 59.989 37.037 0.00 0.00 32.04 3.91
511 636 2.884012 TGTCCCGTAAGACGTTTACTGA 59.116 45.455 14.41 10.03 40.58 3.41
512 637 2.982470 GTGTCCCGTAAGACGTTTACTG 59.018 50.000 14.41 10.06 40.58 2.74
513 638 2.350772 CGTGTCCCGTAAGACGTTTACT 60.351 50.000 14.41 0.00 40.58 2.24
514 639 1.978782 CGTGTCCCGTAAGACGTTTAC 59.021 52.381 0.00 0.00 40.58 2.01
515 640 1.068610 CCGTGTCCCGTAAGACGTTTA 60.069 52.381 0.00 0.00 40.58 2.01
516 641 0.318955 CCGTGTCCCGTAAGACGTTT 60.319 55.000 0.00 0.00 40.58 3.60
518 643 1.580845 CTCCGTGTCCCGTAAGACGT 61.581 60.000 0.00 0.00 40.58 4.34
519 644 1.136147 CTCCGTGTCCCGTAAGACG 59.864 63.158 0.00 0.00 39.77 4.18
520 645 1.509923 CCTCCGTGTCCCGTAAGAC 59.490 63.158 0.00 0.00 43.02 3.01
521 646 1.679977 CCCTCCGTGTCCCGTAAGA 60.680 63.158 0.00 0.00 43.02 2.10
524 649 1.561769 TACTCCCTCCGTGTCCCGTA 61.562 60.000 0.00 0.00 33.66 4.02
525 650 2.833604 CTACTCCCTCCGTGTCCCGT 62.834 65.000 0.00 0.00 33.66 5.28
526 651 2.044650 TACTCCCTCCGTGTCCCG 60.045 66.667 0.00 0.00 0.00 5.14
527 652 0.257039 TACTACTCCCTCCGTGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
528 653 2.134789 TTACTACTCCCTCCGTGTCC 57.865 55.000 0.00 0.00 0.00 4.02
529 654 5.841957 TTATTTACTACTCCCTCCGTGTC 57.158 43.478 0.00 0.00 0.00 3.67
530 655 6.155737 ACATTTATTTACTACTCCCTCCGTGT 59.844 38.462 0.00 0.00 0.00 4.49
531 656 6.579865 ACATTTATTTACTACTCCCTCCGTG 58.420 40.000 0.00 0.00 0.00 4.94
533 658 9.420551 GATAACATTTATTTACTACTCCCTCCG 57.579 37.037 0.00 0.00 0.00 4.63
534 659 9.722184 GGATAACATTTATTTACTACTCCCTCC 57.278 37.037 0.00 0.00 0.00 4.30
571 766 3.217626 CCAAACAGTGAGGAGCTCTTTT 58.782 45.455 14.64 0.00 0.00 2.27
575 770 2.262423 AACCAAACAGTGAGGAGCTC 57.738 50.000 4.71 4.71 0.00 4.09
576 771 2.689983 CAAAACCAAACAGTGAGGAGCT 59.310 45.455 0.00 0.00 0.00 4.09
577 772 2.427095 ACAAAACCAAACAGTGAGGAGC 59.573 45.455 0.00 0.00 0.00 4.70
734 1375 0.530870 GCGGAAGAATCGGGGAAGAG 60.531 60.000 0.00 0.00 0.00 2.85
764 1405 2.286885 GTGGGGGATGGGGGAAGA 60.287 66.667 0.00 0.00 0.00 2.87
767 1408 4.448340 GGAGTGGGGGATGGGGGA 62.448 72.222 0.00 0.00 0.00 4.81
783 1424 0.678395 CGAGATGATGGGGAGAGTGG 59.322 60.000 0.00 0.00 0.00 4.00
1244 1889 1.112916 TCTGTCGGCTGTGGAGTTGA 61.113 55.000 0.00 0.00 0.00 3.18
1374 2019 3.071837 TACGCGCCCATCTGGACA 61.072 61.111 5.73 0.00 37.39 4.02
1659 2322 3.702048 CGGCGGGAAGAGGTGGAA 61.702 66.667 0.00 0.00 0.00 3.53
1776 2439 1.148157 CGCTGATGTTGCCGTAGAGG 61.148 60.000 0.00 0.00 44.97 3.69
1836 2499 4.257654 TGCGACCTTGGGCCGAAA 62.258 61.111 0.54 0.00 0.00 3.46
2212 2875 2.176148 GGAGAAGGTAGAGGCCTAGAGT 59.824 54.545 4.42 0.00 38.03 3.24
2219 2882 4.672899 AGATAGATGGAGAAGGTAGAGGC 58.327 47.826 0.00 0.00 0.00 4.70
2221 2884 7.595819 ACAAAGATAGATGGAGAAGGTAGAG 57.404 40.000 0.00 0.00 0.00 2.43
2224 2887 9.268282 AGTTAACAAAGATAGATGGAGAAGGTA 57.732 33.333 8.61 0.00 0.00 3.08
2225 2888 8.043710 CAGTTAACAAAGATAGATGGAGAAGGT 58.956 37.037 8.61 0.00 0.00 3.50
2226 2889 8.043710 ACAGTTAACAAAGATAGATGGAGAAGG 58.956 37.037 8.61 0.00 0.00 3.46
2227 2890 9.442047 AACAGTTAACAAAGATAGATGGAGAAG 57.558 33.333 8.61 0.00 0.00 2.85
2228 2891 9.219603 CAACAGTTAACAAAGATAGATGGAGAA 57.780 33.333 8.61 0.00 0.00 2.87
2229 2892 7.334421 GCAACAGTTAACAAAGATAGATGGAGA 59.666 37.037 8.61 0.00 0.00 3.71
2230 2893 7.335422 AGCAACAGTTAACAAAGATAGATGGAG 59.665 37.037 8.61 0.00 0.00 3.86
2231 2894 7.119699 CAGCAACAGTTAACAAAGATAGATGGA 59.880 37.037 8.61 0.00 0.00 3.41
2232 2895 7.246311 CAGCAACAGTTAACAAAGATAGATGG 58.754 38.462 8.61 0.00 0.00 3.51
2233 2896 6.744537 GCAGCAACAGTTAACAAAGATAGATG 59.255 38.462 8.61 1.45 0.00 2.90
2234 2897 6.430925 TGCAGCAACAGTTAACAAAGATAGAT 59.569 34.615 8.61 0.00 0.00 1.98
2242 2905 4.753233 ACAATTGCAGCAACAGTTAACAA 58.247 34.783 10.85 0.00 0.00 2.83
2398 3092 1.808945 CAAATGGACAGTGACTGGAGC 59.191 52.381 17.92 5.73 35.51 4.70
3000 3853 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3001 3854 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3002 3855 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3003 3856 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3004 3857 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3005 3858 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3006 3859 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
3007 3860 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3008 3861 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3009 3862 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3010 3863 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3011 3864 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3012 3865 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3013 3866 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
3014 3867 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
3015 3868 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
3016 3869 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
3017 3870 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
3018 3871 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
3019 3872 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
3020 3873 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
3033 3886 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
3034 3887 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
3035 3888 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
3036 3889 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
3037 3890 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
3038 3891 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
3039 3892 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
3040 3893 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
3041 3894 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3042 3895 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
3043 3896 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
3044 3897 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3045 3898 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3046 3899 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3047 3900 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3048 3901 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3049 3902 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3050 3903 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3051 3904 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3052 3905 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3053 3906 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3054 3907 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3055 3908 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3056 3909 4.766375 TCCTCCGTTCCAAAATAGATGAC 58.234 43.478 0.00 0.00 0.00 3.06
3057 3910 5.045869 ACTTCCTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
3058 3911 5.186198 ACTTCCTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
3059 3912 5.437191 ACTTCCTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
3060 3913 4.903045 ACTTCCTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
3061 3914 5.731591 ACTACTTCCTCCGTTCCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
3062 3915 5.750352 ACTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
3063 3916 4.635699 ACTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
3064 3917 4.131596 CAACTACTTCCTCCGTTCCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
3065 3918 3.735591 CAACTACTTCCTCCGTTCCAAA 58.264 45.455 0.00 0.00 0.00 3.28
3066 3919 2.549349 GCAACTACTTCCTCCGTTCCAA 60.549 50.000 0.00 0.00 0.00 3.53
3067 3920 1.001633 GCAACTACTTCCTCCGTTCCA 59.998 52.381 0.00 0.00 0.00 3.53
3068 3921 1.675116 GGCAACTACTTCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
3069 3922 1.001633 TGGCAACTACTTCCTCCGTTC 59.998 52.381 0.00 0.00 37.61 3.95
3070 3923 1.053424 TGGCAACTACTTCCTCCGTT 58.947 50.000 0.00 0.00 37.61 4.44
3071 3924 1.053424 TTGGCAACTACTTCCTCCGT 58.947 50.000 0.00 0.00 37.61 4.69
3072 3925 1.270625 TGTTGGCAACTACTTCCTCCG 60.271 52.381 28.71 0.00 43.18 4.63
3073 3926 2.561478 TGTTGGCAACTACTTCCTCC 57.439 50.000 28.71 1.15 43.18 4.30
3222 4076 6.917477 TCAACACAAGCTTTTTAACTAGCATG 59.083 34.615 0.00 10.02 40.75 4.06
3432 4322 5.116983 GCCAGTTGTGTTTCATTCATTTACG 59.883 40.000 0.00 0.00 0.00 3.18
3475 4365 5.871396 TGGAGACCATAATCCTAACTCAC 57.129 43.478 0.00 0.00 36.50 3.51
3508 4398 5.695851 AAAGAGTGATGCACCTACTTTTG 57.304 39.130 0.00 0.00 33.15 2.44
3545 4436 4.700268 TTCGCATGCACAAAGTGAATAT 57.300 36.364 19.57 0.00 35.23 1.28
3550 4441 0.780002 GCTTTCGCATGCACAAAGTG 59.220 50.000 27.57 13.83 34.64 3.16
3561 4452 4.292208 CACGTGCACGCTTTCGCA 62.292 61.111 37.35 0.00 44.43 5.10
3576 4467 1.226688 TGCTAGACAGATCGCGCAC 60.227 57.895 8.75 0.00 32.34 5.34
3619 4510 3.264193 ACTGCCTGAAGACCAATCACATA 59.736 43.478 0.00 0.00 0.00 2.29
3620 4511 2.040813 ACTGCCTGAAGACCAATCACAT 59.959 45.455 0.00 0.00 0.00 3.21
3621 4512 1.421268 ACTGCCTGAAGACCAATCACA 59.579 47.619 0.00 0.00 0.00 3.58
3622 4513 1.808945 CACTGCCTGAAGACCAATCAC 59.191 52.381 0.00 0.00 0.00 3.06
3623 4514 1.271543 CCACTGCCTGAAGACCAATCA 60.272 52.381 0.00 0.00 0.00 2.57
3624 4515 1.457346 CCACTGCCTGAAGACCAATC 58.543 55.000 0.00 0.00 0.00 2.67
3625 4516 0.038744 CCCACTGCCTGAAGACCAAT 59.961 55.000 0.00 0.00 0.00 3.16
3626 4517 1.455849 CCCACTGCCTGAAGACCAA 59.544 57.895 0.00 0.00 0.00 3.67
3811 4710 4.649218 TCCTCCATGACATTGATCGAGTTA 59.351 41.667 0.00 0.00 0.00 2.24
3886 4785 0.615331 AGACGTACGGTACCTCCTCA 59.385 55.000 21.06 0.00 0.00 3.86
3944 4843 0.968393 ACTGTCTCCTCCTCGAAGCC 60.968 60.000 0.00 0.00 0.00 4.35
4000 4899 7.597288 ACAGCATTATGTATGTACCAGACTA 57.403 36.000 3.94 0.00 36.57 2.59
4048 4948 1.302511 CTGGGTTTAGTGGCGCAGT 60.303 57.895 10.83 0.57 39.72 4.40
4094 4994 3.506108 CGGAGCCAAGAATGCTGG 58.494 61.111 0.00 0.00 39.69 4.85
4239 7910 6.952773 AACTAGTACAAAAATCAGGCACAA 57.047 33.333 0.00 0.00 0.00 3.33
4399 8095 5.962433 TCAATCAGCACTAGGTACAGTTAC 58.038 41.667 0.00 0.00 0.00 2.50
4422 8119 1.489649 CAGCTCCATCCAGGACTTCAT 59.510 52.381 0.00 0.00 43.07 2.57
4441 8138 7.772292 AGATCTTGATTCTTATGCTTTGCTACA 59.228 33.333 0.00 0.00 0.00 2.74
4455 8152 3.843027 ACACCAGACCAGATCTTGATTCT 59.157 43.478 0.00 0.00 34.41 2.40
4496 8193 7.040478 AGCTCACATAACATAGCAACAGAAAAA 60.040 33.333 0.00 0.00 37.44 1.94
4497 8194 6.430925 AGCTCACATAACATAGCAACAGAAAA 59.569 34.615 0.00 0.00 37.44 2.29
4498 8195 5.939883 AGCTCACATAACATAGCAACAGAAA 59.060 36.000 0.00 0.00 37.44 2.52
4499 8196 5.352293 CAGCTCACATAACATAGCAACAGAA 59.648 40.000 0.00 0.00 37.44 3.02
4500 8197 4.872124 CAGCTCACATAACATAGCAACAGA 59.128 41.667 0.00 0.00 37.44 3.41
4501 8198 4.872124 TCAGCTCACATAACATAGCAACAG 59.128 41.667 0.00 0.00 37.44 3.16
4502 8199 4.831107 TCAGCTCACATAACATAGCAACA 58.169 39.130 0.00 0.00 37.44 3.33
4503 8200 5.801350 TTCAGCTCACATAACATAGCAAC 57.199 39.130 0.00 0.00 37.44 4.17
4504 8201 6.114767 TGATTCAGCTCACATAACATAGCAA 58.885 36.000 0.00 0.00 37.44 3.91
4505 8202 5.673514 TGATTCAGCTCACATAACATAGCA 58.326 37.500 0.00 0.00 37.44 3.49
4506 8203 6.259608 ACTTGATTCAGCTCACATAACATAGC 59.740 38.462 0.00 0.00 35.16 2.97
4507 8204 7.783090 ACTTGATTCAGCTCACATAACATAG 57.217 36.000 0.00 0.00 0.00 2.23
4508 8205 7.823799 TGAACTTGATTCAGCTCACATAACATA 59.176 33.333 0.00 0.00 42.62 2.29
4509 8206 6.656270 TGAACTTGATTCAGCTCACATAACAT 59.344 34.615 0.00 0.00 42.62 2.71
4510 8207 5.997129 TGAACTTGATTCAGCTCACATAACA 59.003 36.000 0.00 0.00 42.62 2.41
4511 8208 6.486253 TGAACTTGATTCAGCTCACATAAC 57.514 37.500 0.00 0.00 42.62 1.89
4536 8233 1.301165 AACTACGGGTGTTCGGTGC 60.301 57.895 0.00 0.00 0.00 5.01
4561 8258 1.334869 CAGGAAATTACGCTCATGGGC 59.665 52.381 7.77 7.77 0.00 5.36
4587 8284 4.056125 CGGGCGACACAGAGAGCA 62.056 66.667 0.00 0.00 0.00 4.26
4605 8302 1.274770 GCGCGAAATTAGGGTACGC 59.725 57.895 12.10 0.77 44.64 4.42
4606 8303 1.141591 ACGCGCGAAATTAGGGTACG 61.142 55.000 39.36 1.45 0.00 3.67
4607 8304 0.299597 CACGCGCGAAATTAGGGTAC 59.700 55.000 39.36 0.00 0.00 3.34
4608 8305 1.422950 GCACGCGCGAAATTAGGGTA 61.423 55.000 39.36 0.00 0.00 3.69
4609 8306 2.746803 GCACGCGCGAAATTAGGGT 61.747 57.895 39.36 7.53 0.00 4.34
4610 8307 2.022762 GCACGCGCGAAATTAGGG 59.977 61.111 39.36 14.91 0.00 3.53
4611 8308 2.022762 GGCACGCGCGAAATTAGG 59.977 61.111 39.36 16.31 39.92 2.69
4612 8309 2.022762 GGGCACGCGCGAAATTAG 59.977 61.111 39.36 18.38 39.92 1.73
4613 8310 3.501548 GGGGCACGCGCGAAATTA 61.502 61.111 39.36 0.00 39.92 1.40
4623 8320 4.785453 GAAGGCTGGAGGGGCACG 62.785 72.222 0.00 0.00 0.00 5.34
4624 8321 4.785453 CGAAGGCTGGAGGGGCAC 62.785 72.222 0.00 0.00 0.00 5.01
4626 8323 3.468326 GATCGAAGGCTGGAGGGGC 62.468 68.421 0.00 0.00 0.00 5.80
4627 8324 2.812619 GGATCGAAGGCTGGAGGGG 61.813 68.421 0.00 0.00 0.00 4.79
4628 8325 1.753368 GAGGATCGAAGGCTGGAGGG 61.753 65.000 0.00 0.00 0.00 4.30
4629 8326 1.745264 GAGGATCGAAGGCTGGAGG 59.255 63.158 0.00 0.00 0.00 4.30
4630 8327 0.758685 AGGAGGATCGAAGGCTGGAG 60.759 60.000 0.00 0.00 34.37 3.86
4631 8328 0.325671 AAGGAGGATCGAAGGCTGGA 60.326 55.000 0.00 0.00 34.37 3.86
4632 8329 0.543749 AAAGGAGGATCGAAGGCTGG 59.456 55.000 0.00 0.00 34.37 4.85
4633 8330 2.012673 CAAAAGGAGGATCGAAGGCTG 58.987 52.381 0.00 0.00 34.37 4.85
4634 8331 1.065126 CCAAAAGGAGGATCGAAGGCT 60.065 52.381 0.00 0.00 34.37 4.58
4635 8332 1.383523 CCAAAAGGAGGATCGAAGGC 58.616 55.000 0.00 0.00 34.37 4.35
4636 8333 2.019156 GCCCAAAAGGAGGATCGAAGG 61.019 57.143 0.00 0.00 38.24 3.46
4637 8334 1.383523 GCCCAAAAGGAGGATCGAAG 58.616 55.000 0.00 0.00 38.24 3.79
4638 8335 0.034477 GGCCCAAAAGGAGGATCGAA 60.034 55.000 0.00 0.00 38.24 3.71
4639 8336 1.607612 GGCCCAAAAGGAGGATCGA 59.392 57.895 0.00 0.00 38.24 3.59
4640 8337 1.819632 CGGCCCAAAAGGAGGATCG 60.820 63.158 0.00 0.00 38.24 3.69
4641 8338 1.453928 CCGGCCCAAAAGGAGGATC 60.454 63.158 0.00 0.00 37.19 3.36
4642 8339 2.683475 CCGGCCCAAAAGGAGGAT 59.317 61.111 0.00 0.00 37.19 3.24
4643 8340 4.360405 GCCGGCCCAAAAGGAGGA 62.360 66.667 18.11 0.00 37.19 3.71
4644 8341 4.366684 AGCCGGCCCAAAAGGAGG 62.367 66.667 26.15 0.00 38.24 4.30
4645 8342 2.751837 GAGCCGGCCCAAAAGGAG 60.752 66.667 26.15 0.00 38.24 3.69
4646 8343 2.439553 AATGAGCCGGCCCAAAAGGA 62.440 55.000 26.15 0.00 38.24 3.36
4647 8344 1.948721 GAATGAGCCGGCCCAAAAGG 61.949 60.000 26.15 0.00 39.47 3.11
4648 8345 1.250154 TGAATGAGCCGGCCCAAAAG 61.250 55.000 26.15 0.00 0.00 2.27
4649 8346 1.228706 TGAATGAGCCGGCCCAAAA 60.229 52.632 26.15 4.41 0.00 2.44
4650 8347 1.976474 GTGAATGAGCCGGCCCAAA 60.976 57.895 26.15 6.62 0.00 3.28
4651 8348 2.361104 GTGAATGAGCCGGCCCAA 60.361 61.111 26.15 9.69 0.00 4.12
4652 8349 4.776322 CGTGAATGAGCCGGCCCA 62.776 66.667 26.15 20.75 0.00 5.36
4654 8351 3.757248 ATCCGTGAATGAGCCGGCC 62.757 63.158 26.15 15.80 41.46 6.13
4655 8352 1.376609 AAATCCGTGAATGAGCCGGC 61.377 55.000 21.89 21.89 41.46 6.13
4656 8353 0.657840 GAAATCCGTGAATGAGCCGG 59.342 55.000 0.00 0.00 43.03 6.13
4657 8354 1.656652 AGAAATCCGTGAATGAGCCG 58.343 50.000 0.00 0.00 0.00 5.52
4658 8355 2.356069 GGAAGAAATCCGTGAATGAGCC 59.644 50.000 0.00 0.00 38.79 4.70
4659 8356 3.682372 GGAAGAAATCCGTGAATGAGC 57.318 47.619 0.00 0.00 38.79 4.26
4670 8367 1.919240 AAACCGGTGGGGAAGAAATC 58.081 50.000 8.52 0.00 39.97 2.17
4671 8368 1.967779 CAAAACCGGTGGGGAAGAAAT 59.032 47.619 8.52 0.00 39.97 2.17
4672 8369 1.404843 CAAAACCGGTGGGGAAGAAA 58.595 50.000 8.52 0.00 39.97 2.52
4673 8370 0.468400 CCAAAACCGGTGGGGAAGAA 60.468 55.000 8.52 0.00 39.97 2.52
4674 8371 1.151908 CCAAAACCGGTGGGGAAGA 59.848 57.895 8.52 0.00 39.97 2.87
4675 8372 3.771978 CCAAAACCGGTGGGGAAG 58.228 61.111 8.52 0.00 39.97 3.46
4680 8377 0.757561 AACCTTCCCAAAACCGGTGG 60.758 55.000 8.52 4.76 35.77 4.61
4681 8378 0.671796 GAACCTTCCCAAAACCGGTG 59.328 55.000 8.52 0.00 0.00 4.94
4682 8379 0.259356 TGAACCTTCCCAAAACCGGT 59.741 50.000 0.00 0.00 0.00 5.28
4683 8380 1.339929 CTTGAACCTTCCCAAAACCGG 59.660 52.381 0.00 0.00 0.00 5.28
4684 8381 2.303175 TCTTGAACCTTCCCAAAACCG 58.697 47.619 0.00 0.00 0.00 4.44
4685 8382 3.181469 GGTTCTTGAACCTTCCCAAAACC 60.181 47.826 21.47 0.00 39.71 3.27
4686 8383 4.054780 GGTTCTTGAACCTTCCCAAAAC 57.945 45.455 21.47 0.00 39.71 2.43
4697 8394 4.709250 AGGTTCAGAGAAGGTTCTTGAAC 58.291 43.478 22.97 22.97 44.01 3.18
4698 8395 5.373812 AAGGTTCAGAGAAGGTTCTTGAA 57.626 39.130 10.63 10.63 37.73 2.69
4699 8396 5.373812 AAAGGTTCAGAGAAGGTTCTTGA 57.626 39.130 0.00 0.00 37.73 3.02
4700 8397 6.456795 AAAAAGGTTCAGAGAAGGTTCTTG 57.543 37.500 0.00 0.00 37.73 3.02
4721 8418 9.389755 CCAAAAGGAAATAGAAAACAGGAAAAA 57.610 29.630 0.00 0.00 0.00 1.94
4722 8419 8.544622 ACCAAAAGGAAATAGAAAACAGGAAAA 58.455 29.630 0.00 0.00 0.00 2.29
4723 8420 8.084985 ACCAAAAGGAAATAGAAAACAGGAAA 57.915 30.769 0.00 0.00 0.00 3.13
4724 8421 7.669089 ACCAAAAGGAAATAGAAAACAGGAA 57.331 32.000 0.00 0.00 0.00 3.36
4725 8422 7.669089 AACCAAAAGGAAATAGAAAACAGGA 57.331 32.000 0.00 0.00 0.00 3.86
4726 8423 8.731275 AAAACCAAAAGGAAATAGAAAACAGG 57.269 30.769 0.00 0.00 0.00 4.00
4727 8424 9.599866 AGAAAACCAAAAGGAAATAGAAAACAG 57.400 29.630 0.00 0.00 0.00 3.16
4728 8425 9.952030 AAGAAAACCAAAAGGAAATAGAAAACA 57.048 25.926 0.00 0.00 0.00 2.83
4800 8497 9.624697 GTTGATGAGTTTGAAATATGTTTGCTA 57.375 29.630 0.00 0.00 0.00 3.49
4801 8498 8.143193 TGTTGATGAGTTTGAAATATGTTTGCT 58.857 29.630 0.00 0.00 0.00 3.91
4802 8499 8.296799 TGTTGATGAGTTTGAAATATGTTTGC 57.703 30.769 0.00 0.00 0.00 3.68
4890 8587 9.019764 CACTATTTCAAAAACAAGTCACGATTT 57.980 29.630 0.00 0.00 0.00 2.17
4891 8588 7.647715 CCACTATTTCAAAAACAAGTCACGATT 59.352 33.333 0.00 0.00 0.00 3.34
4892 8589 7.012894 TCCACTATTTCAAAAACAAGTCACGAT 59.987 33.333 0.00 0.00 0.00 3.73
4893 8590 6.316640 TCCACTATTTCAAAAACAAGTCACGA 59.683 34.615 0.00 0.00 0.00 4.35
4894 8591 6.413818 GTCCACTATTTCAAAAACAAGTCACG 59.586 38.462 0.00 0.00 0.00 4.35
4895 8592 7.254852 TGTCCACTATTTCAAAAACAAGTCAC 58.745 34.615 0.00 0.00 0.00 3.67
4896 8593 7.397892 TGTCCACTATTTCAAAAACAAGTCA 57.602 32.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.