Multiple sequence alignment - TraesCS7B01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G194200 chr7B 100.000 7413 0 0 1 7413 333964387 333956975 0.000000e+00 13690.0
1 TraesCS7B01G194200 chr7B 82.815 611 90 12 2 603 103952320 103952924 3.940000e-147 532.0
2 TraesCS7B01G194200 chr7B 83.012 571 87 6 37 603 3697111 3696547 6.640000e-140 508.0
3 TraesCS7B01G194200 chr7B 93.939 132 3 5 3579 3709 568491733 568491860 2.110000e-45 195.0
4 TraesCS7B01G194200 chr7B 93.243 74 3 1 5280 5351 333959081 333959008 2.830000e-19 108.0
5 TraesCS7B01G194200 chr7B 93.243 74 3 1 5307 5380 333959108 333959037 2.830000e-19 108.0
6 TraesCS7B01G194200 chr7A 93.436 2529 80 30 3693 6207 194794137 194796593 0.000000e+00 3672.0
7 TraesCS7B01G194200 chr7A 95.545 1616 33 13 689 2282 194790946 194792544 0.000000e+00 2549.0
8 TraesCS7B01G194200 chr7A 95.602 523 18 2 6245 6766 194796594 194797112 0.000000e+00 833.0
9 TraesCS7B01G194200 chr7A 92.467 531 38 1 2862 3390 194793363 194793893 0.000000e+00 758.0
10 TraesCS7B01G194200 chr7A 97.092 447 9 1 2299 2741 194792628 194793074 0.000000e+00 750.0
11 TraesCS7B01G194200 chr7A 89.807 363 22 6 6944 7292 194797851 194798212 1.130000e-122 451.0
12 TraesCS7B01G194200 chr7A 95.082 183 9 0 3391 3573 194793963 194794145 9.410000e-74 289.0
13 TraesCS7B01G194200 chr7A 100.000 115 0 0 3579 3693 502353760 502353874 5.830000e-51 213.0
14 TraesCS7B01G194200 chr7A 90.123 81 3 1 6878 6953 194797562 194797642 4.730000e-17 100.0
15 TraesCS7B01G194200 chr7A 94.828 58 1 2 7351 7407 194798221 194798277 1.020000e-13 89.8
16 TraesCS7B01G194200 chr7D 89.256 2932 141 63 4586 7413 189247292 189244431 0.000000e+00 3509.0
17 TraesCS7B01G194200 chr7D 95.941 1626 35 6 673 2282 189251295 189249685 0.000000e+00 2608.0
18 TraesCS7B01G194200 chr7D 94.708 907 29 2 3693 4599 189248208 189247321 0.000000e+00 1391.0
19 TraesCS7B01G194200 chr7D 92.279 531 34 3 2862 3390 189248977 189248452 0.000000e+00 747.0
20 TraesCS7B01G194200 chr7D 94.954 436 13 5 2302 2735 189249594 189249166 0.000000e+00 675.0
21 TraesCS7B01G194200 chr7D 77.425 567 103 15 45 605 573112306 573111759 1.550000e-81 315.0
22 TraesCS7B01G194200 chr7D 94.054 185 11 0 3389 3573 189248384 189248200 1.570000e-71 281.0
23 TraesCS7B01G194200 chr7D 100.000 80 0 0 2783 2862 189249148 189249069 1.670000e-31 148.0
24 TraesCS7B01G194200 chr6A 87.310 922 116 1 1127 2048 506100442 506099522 0.000000e+00 1053.0
25 TraesCS7B01G194200 chr6A 86.538 260 31 4 3133 3390 297628815 297629072 4.380000e-72 283.0
26 TraesCS7B01G194200 chr6A 89.313 131 10 4 3586 3715 502972983 502972856 2.140000e-35 161.0
27 TraesCS7B01G194200 chr6B 85.773 970 130 6 1086 2048 549625306 549624338 0.000000e+00 1020.0
28 TraesCS7B01G194200 chr6B 83.798 574 81 8 36 603 653876680 653876113 1.090000e-147 534.0
29 TraesCS7B01G194200 chr6B 83.566 572 85 5 39 606 153969748 153970314 1.830000e-145 527.0
30 TraesCS7B01G194200 chr6B 86.973 261 29 5 3133 3390 343040949 343040691 9.410000e-74 289.0
31 TraesCS7B01G194200 chr6B 100.000 115 0 0 3579 3693 69457564 69457450 5.830000e-51 213.0
32 TraesCS7B01G194200 chr6B 75.397 504 78 31 4831 5322 123488134 123487665 1.260000e-47 202.0
33 TraesCS7B01G194200 chr6B 78.713 202 34 7 4831 5029 123490356 123490161 7.810000e-25 126.0
34 TraesCS7B01G194200 chr6D 85.567 970 132 6 1086 2048 364496952 364495984 0.000000e+00 1009.0
35 TraesCS7B01G194200 chr6D 86.538 260 32 3 3133 3390 218386651 218386909 4.380000e-72 283.0
36 TraesCS7B01G194200 chr2D 86.207 899 75 22 4401 5288 35921430 35922290 0.000000e+00 928.0
37 TraesCS7B01G194200 chr2D 91.351 185 8 3 4109 4291 35921262 35921440 5.740000e-61 246.0
38 TraesCS7B01G194200 chr2D 89.720 107 11 0 3696 3802 35921163 35921269 3.610000e-28 137.0
39 TraesCS7B01G194200 chr2D 76.190 210 36 11 3 201 572943108 572943314 1.700000e-16 99.0
40 TraesCS7B01G194200 chr2A 85.878 609 46 17 4401 5005 39292296 39292868 4.920000e-171 612.0
41 TraesCS7B01G194200 chr2A 93.296 179 10 2 4114 4291 39292129 39292306 5.700000e-66 263.0
42 TraesCS7B01G194200 chr2A 99.174 121 0 1 3579 3699 116436909 116437028 4.500000e-52 217.0
43 TraesCS7B01G194200 chr2A 91.304 92 4 4 4997 5085 39293056 39293146 1.010000e-23 122.0
44 TraesCS7B01G194200 chr1B 82.867 607 89 12 6 603 666553063 666553663 1.420000e-146 531.0
45 TraesCS7B01G194200 chr1B 81.524 525 88 5 82 602 74506017 74506536 2.470000e-114 424.0
46 TraesCS7B01G194200 chr1B 78.571 350 67 6 36 379 58709838 58710185 2.690000e-54 224.0
47 TraesCS7B01G194200 chr5B 82.237 608 92 11 5 602 57921036 57921637 1.840000e-140 510.0
48 TraesCS7B01G194200 chr5B 82.867 572 87 7 39 605 645398536 645397971 3.090000e-138 503.0
49 TraesCS7B01G194200 chr5B 81.713 607 97 11 5 602 549426202 549426803 1.860000e-135 494.0
50 TraesCS7B01G194200 chr5B 82.548 573 89 7 36 602 549459892 549460459 1.860000e-135 494.0
51 TraesCS7B01G194200 chr4B 81.475 610 99 12 5 605 67342490 67341886 8.640000e-134 488.0
52 TraesCS7B01G194200 chr3D 82.119 453 73 6 152 602 523388264 523388710 1.510000e-101 381.0
53 TraesCS7B01G194200 chr3D 77.504 569 105 16 44 606 66345904 66345353 3.340000e-83 320.0
54 TraesCS7B01G194200 chr3D 86.538 260 28 6 3136 3390 255424672 255424415 5.660000e-71 279.0
55 TraesCS7B01G194200 chr1D 86.090 266 31 5 3130 3390 169066304 169066568 1.570000e-71 281.0
56 TraesCS7B01G194200 chr3A 86.207 261 28 7 3136 3390 319962593 319962335 7.330000e-70 276.0
57 TraesCS7B01G194200 chr3A 100.000 115 0 0 3579 3693 143835828 143835942 5.830000e-51 213.0
58 TraesCS7B01G194200 chr3A 90.226 133 12 1 3579 3711 325290449 325290318 9.890000e-39 172.0
59 TraesCS7B01G194200 chr4D 84.615 273 36 5 3123 3390 32418818 32419089 4.410000e-67 267.0
60 TraesCS7B01G194200 chrUn 85.425 247 30 3 360 605 297719656 297719415 1.230000e-62 252.0
61 TraesCS7B01G194200 chrUn 85.656 244 29 3 360 602 397425194 397425432 1.230000e-62 252.0
62 TraesCS7B01G194200 chrUn 85.425 247 30 3 360 605 428410770 428410529 1.230000e-62 252.0
63 TraesCS7B01G194200 chr5A 100.000 115 0 0 3579 3693 515082075 515081961 5.830000e-51 213.0
64 TraesCS7B01G194200 chr3B 100.000 115 0 0 3579 3693 157239087 157239201 5.830000e-51 213.0
65 TraesCS7B01G194200 chr3B 98.347 121 2 0 3579 3699 749984836 749984716 5.830000e-51 213.0
66 TraesCS7B01G194200 chr2B 100.000 115 0 0 3579 3693 708794711 708794597 5.830000e-51 213.0
67 TraesCS7B01G194200 chr4A 99.115 113 1 0 3579 3691 389235329 389235441 3.510000e-48 204.0
68 TraesCS7B01G194200 chr1A 95.283 106 4 1 3602 3707 429708332 429708436 4.600000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G194200 chr7B 333956975 333964387 7412 True 13690.000000 13690 100.000000 1 7413 1 chr7B.!!$R2 7412
1 TraesCS7B01G194200 chr7B 103952320 103952924 604 False 532.000000 532 82.815000 2 603 1 chr7B.!!$F1 601
2 TraesCS7B01G194200 chr7B 3696547 3697111 564 True 508.000000 508 83.012000 37 603 1 chr7B.!!$R1 566
3 TraesCS7B01G194200 chr7A 194790946 194798277 7331 False 1054.644444 3672 93.775778 689 7407 9 chr7A.!!$F2 6718
4 TraesCS7B01G194200 chr7D 189244431 189251295 6864 True 1337.000000 3509 94.456000 673 7413 7 chr7D.!!$R2 6740
5 TraesCS7B01G194200 chr7D 573111759 573112306 547 True 315.000000 315 77.425000 45 605 1 chr7D.!!$R1 560
6 TraesCS7B01G194200 chr6A 506099522 506100442 920 True 1053.000000 1053 87.310000 1127 2048 1 chr6A.!!$R2 921
7 TraesCS7B01G194200 chr6B 549624338 549625306 968 True 1020.000000 1020 85.773000 1086 2048 1 chr6B.!!$R3 962
8 TraesCS7B01G194200 chr6B 653876113 653876680 567 True 534.000000 534 83.798000 36 603 1 chr6B.!!$R4 567
9 TraesCS7B01G194200 chr6B 153969748 153970314 566 False 527.000000 527 83.566000 39 606 1 chr6B.!!$F1 567
10 TraesCS7B01G194200 chr6D 364495984 364496952 968 True 1009.000000 1009 85.567000 1086 2048 1 chr6D.!!$R1 962
11 TraesCS7B01G194200 chr2D 35921163 35922290 1127 False 437.000000 928 89.092667 3696 5288 3 chr2D.!!$F2 1592
12 TraesCS7B01G194200 chr2A 39292129 39293146 1017 False 332.333333 612 90.159333 4114 5085 3 chr2A.!!$F2 971
13 TraesCS7B01G194200 chr1B 666553063 666553663 600 False 531.000000 531 82.867000 6 603 1 chr1B.!!$F3 597
14 TraesCS7B01G194200 chr1B 74506017 74506536 519 False 424.000000 424 81.524000 82 602 1 chr1B.!!$F2 520
15 TraesCS7B01G194200 chr5B 57921036 57921637 601 False 510.000000 510 82.237000 5 602 1 chr5B.!!$F1 597
16 TraesCS7B01G194200 chr5B 645397971 645398536 565 True 503.000000 503 82.867000 39 605 1 chr5B.!!$R1 566
17 TraesCS7B01G194200 chr5B 549426202 549426803 601 False 494.000000 494 81.713000 5 602 1 chr5B.!!$F2 597
18 TraesCS7B01G194200 chr5B 549459892 549460459 567 False 494.000000 494 82.548000 36 602 1 chr5B.!!$F3 566
19 TraesCS7B01G194200 chr4B 67341886 67342490 604 True 488.000000 488 81.475000 5 605 1 chr4B.!!$R1 600
20 TraesCS7B01G194200 chr3D 66345353 66345904 551 True 320.000000 320 77.504000 44 606 1 chr3D.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 461 0.034574 TGTATGGCGAGGGCATTTGT 60.035 50.000 10.00 0.0 46.61 2.83 F
792 805 0.465460 CTCTCGAGACTCAGGGGAGG 60.465 65.000 12.08 0.0 45.81 4.30 F
793 806 1.454847 CTCGAGACTCAGGGGAGGG 60.455 68.421 6.58 0.0 45.81 4.30 F
2748 2864 0.455815 GCCCAATGAACCACCGATTC 59.544 55.000 0.00 0.0 0.00 2.52 F
2972 3256 0.546122 AAGAACACTGTCCACCTGCA 59.454 50.000 0.00 0.0 0.00 4.41 F
3629 3984 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.0 0.00 4.51 F
4320 4675 0.252375 AATGGCAGTTGGATGGGCTT 60.252 50.000 0.00 0.0 0.00 4.35 F
5917 6577 0.693622 TTCGCCAGGGAACATTACCA 59.306 50.000 0.00 0.0 31.71 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 1913 0.037975 GTCCGGCGAGAAACTTGGTA 60.038 55.0 9.30 0.00 0.00 3.25 R
2747 2863 2.043664 AGGACAAGTGAGAGGAGGATGA 59.956 50.0 0.00 0.00 0.00 2.92 R
2750 2866 2.110899 AGAAGGACAAGTGAGAGGAGGA 59.889 50.0 0.00 0.00 0.00 3.71 R
3610 3965 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.0 0.00 0.00 35.18 4.85 R
4389 4744 0.399454 ATAGGCTACATGGGCTGCTG 59.601 55.0 8.08 0.00 42.15 4.41 R
4963 5381 0.734889 CCATGTAAAGGAAGCCAGCG 59.265 55.0 0.00 0.00 0.00 5.18 R
6241 6933 0.108138 ACGAACAGATACTGCAGGCC 60.108 55.0 19.93 6.41 34.37 5.19 R
6889 8025 0.814010 GGCATTTCATCTACGCCGGT 60.814 55.0 1.90 0.00 32.14 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 4.660938 GGCGGCAAGGAAGTGGGT 62.661 66.667 3.07 0.00 0.00 4.51
24 26 1.677552 CGGCAAGGAAGTGGGTACT 59.322 57.895 0.00 0.00 39.32 2.73
30 32 3.747708 GCAAGGAAGTGGGTACTTGTCTT 60.748 47.826 0.00 0.00 46.79 3.01
31 33 4.065789 CAAGGAAGTGGGTACTTGTCTTC 58.934 47.826 0.00 2.99 46.79 2.87
33 35 2.290134 GGAAGTGGGTACTTGTCTTCCC 60.290 54.545 19.05 0.00 46.79 3.97
34 36 0.974383 AGTGGGTACTTGTCTTCCCG 59.026 55.000 0.00 0.00 42.54 5.14
35 37 0.683412 GTGGGTACTTGTCTTCCCGT 59.317 55.000 0.00 0.00 42.54 5.28
95 101 2.358247 GGTGGCGACGATGGTGTT 60.358 61.111 0.00 0.00 0.00 3.32
99 105 0.533085 TGGCGACGATGGTGTTTTGA 60.533 50.000 0.00 0.00 0.00 2.69
112 118 7.535258 CGATGGTGTTTTGAAATAAGTTCTCTG 59.465 37.037 0.00 0.00 37.13 3.35
114 120 6.096141 TGGTGTTTTGAAATAAGTTCTCTGCA 59.904 34.615 0.00 0.00 37.13 4.41
121 129 5.247110 TGAAATAAGTTCTCTGCAGTCTCCT 59.753 40.000 14.67 3.32 37.13 3.69
132 140 1.751924 GCAGTCTCCTTACCTCGATGT 59.248 52.381 0.00 0.00 0.00 3.06
142 150 2.045561 ACCTCGATGTCGTCTGATCT 57.954 50.000 2.04 0.00 40.80 2.75
185 194 2.571653 AGATTTGTGTCCCCAGATCGAA 59.428 45.455 0.00 0.00 32.69 3.71
206 215 5.510430 GAATGGTTCCCTTTAGATCTTGGT 58.490 41.667 0.00 0.00 0.00 3.67
218 227 4.602340 AGATCTTGGTAGTTCGTGTGTT 57.398 40.909 0.00 0.00 0.00 3.32
223 232 4.333372 TCTTGGTAGTTCGTGTGTTTTTCC 59.667 41.667 0.00 0.00 0.00 3.13
232 241 1.609072 GTGTGTTTTTCCAGGAGAGCC 59.391 52.381 0.00 0.00 0.00 4.70
233 242 1.214175 TGTGTTTTTCCAGGAGAGCCA 59.786 47.619 0.00 0.00 36.29 4.75
260 269 0.882927 GTGCTTGGTGTGGCGACTTA 60.883 55.000 0.00 0.00 0.00 2.24
267 276 1.641577 GTGTGGCGACTTAGACATCC 58.358 55.000 0.00 0.00 0.00 3.51
287 296 3.197766 TCCTCTTCTGTGTTGTTCTGTGT 59.802 43.478 0.00 0.00 0.00 3.72
304 313 1.070289 GTGTCTTGACCCGGTTTCTCT 59.930 52.381 0.00 0.00 0.00 3.10
306 315 2.561419 TGTCTTGACCCGGTTTCTCTAG 59.439 50.000 0.00 0.00 0.00 2.43
320 329 0.463620 CTCTAGCCCTCTGAACTGGC 59.536 60.000 4.78 4.78 45.70 4.85
328 337 1.277273 CCTCTGAACTGGCAGTGATGA 59.723 52.381 22.83 16.99 37.20 2.92
331 340 3.603532 TCTGAACTGGCAGTGATGAATC 58.396 45.455 22.83 14.11 37.20 2.52
339 348 1.089112 CAGTGATGAATCGCAAGCCA 58.911 50.000 6.62 0.00 39.68 4.75
358 367 3.243501 GCCAGTTTTGCTTGAAGTGATGA 60.244 43.478 0.00 0.00 30.70 2.92
363 372 5.479375 AGTTTTGCTTGAAGTGATGATCCAT 59.521 36.000 0.00 0.00 0.00 3.41
366 375 3.054213 TGCTTGAAGTGATGATCCATCCA 60.054 43.478 4.69 0.00 39.87 3.41
381 390 3.196039 TCCATCCAATGTTGCTTCAATGG 59.804 43.478 8.72 8.72 39.10 3.16
404 413 5.337330 GGTTTTTAGATCTCGTCTCAAGGGA 60.337 44.000 0.00 0.00 38.42 4.20
405 414 6.342111 GTTTTTAGATCTCGTCTCAAGGGAT 58.658 40.000 0.00 0.00 38.42 3.85
420 429 1.779092 AGGGATGAGTGGCTATTGCAT 59.221 47.619 0.66 0.00 41.91 3.96
452 461 0.034574 TGTATGGCGAGGGCATTTGT 60.035 50.000 10.00 0.00 46.61 2.83
456 465 2.481471 GGCGAGGGCATTTGTAGGC 61.481 63.158 0.00 0.00 42.47 3.93
487 496 1.401761 TTGCTGTTGGTTCAGTGCAT 58.598 45.000 0.00 0.00 37.70 3.96
488 497 0.669619 TGCTGTTGGTTCAGTGCATG 59.330 50.000 0.00 0.00 37.70 4.06
503 512 0.810648 GCATGTTTCAATCTCCGGCA 59.189 50.000 0.00 0.00 0.00 5.69
504 513 1.202114 GCATGTTTCAATCTCCGGCAA 59.798 47.619 0.00 0.00 0.00 4.52
508 517 1.305219 TTTCAATCTCCGGCAAGGCG 61.305 55.000 9.22 9.22 40.77 5.52
510 519 3.717294 AATCTCCGGCAAGGCGGT 61.717 61.111 30.09 12.37 40.77 5.68
514 523 3.385749 CTCCGGCAAGGCGGTGTAT 62.386 63.158 30.09 0.00 40.77 2.29
523 532 3.492656 GCAAGGCGGTGTATAATCAGAGA 60.493 47.826 0.00 0.00 0.00 3.10
526 535 5.353394 AGGCGGTGTATAATCAGAGAAAA 57.647 39.130 0.00 0.00 0.00 2.29
527 536 5.930135 AGGCGGTGTATAATCAGAGAAAAT 58.070 37.500 0.00 0.00 0.00 1.82
543 553 8.699130 TCAGAGAAAATAGAAGACTGATATGCA 58.301 33.333 0.00 0.00 0.00 3.96
602 613 5.715439 TCCATCCAGTTGTCTATCCATTT 57.285 39.130 0.00 0.00 0.00 2.32
606 617 7.939039 TCCATCCAGTTGTCTATCCATTTTATC 59.061 37.037 0.00 0.00 0.00 1.75
607 618 7.941238 CCATCCAGTTGTCTATCCATTTTATCT 59.059 37.037 0.00 0.00 0.00 1.98
608 619 9.347240 CATCCAGTTGTCTATCCATTTTATCTT 57.653 33.333 0.00 0.00 0.00 2.40
627 638 8.887264 TTATCTTAATCAGATCTACTCCCTCC 57.113 38.462 0.00 0.00 41.80 4.30
628 639 6.538209 TCTTAATCAGATCTACTCCCTCCT 57.462 41.667 0.00 0.00 0.00 3.69
629 640 6.928202 TCTTAATCAGATCTACTCCCTCCTT 58.072 40.000 0.00 0.00 0.00 3.36
630 641 7.366226 TCTTAATCAGATCTACTCCCTCCTTT 58.634 38.462 0.00 0.00 0.00 3.11
631 642 7.507616 TCTTAATCAGATCTACTCCCTCCTTTC 59.492 40.741 0.00 0.00 0.00 2.62
632 643 4.890499 TCAGATCTACTCCCTCCTTTCT 57.110 45.455 0.00 0.00 0.00 2.52
633 644 5.996271 TCAGATCTACTCCCTCCTTTCTA 57.004 43.478 0.00 0.00 0.00 2.10
634 645 6.342819 TCAGATCTACTCCCTCCTTTCTAA 57.657 41.667 0.00 0.00 0.00 2.10
635 646 6.742756 TCAGATCTACTCCCTCCTTTCTAAA 58.257 40.000 0.00 0.00 0.00 1.85
636 647 7.189794 TCAGATCTACTCCCTCCTTTCTAAAA 58.810 38.462 0.00 0.00 0.00 1.52
637 648 7.846823 TCAGATCTACTCCCTCCTTTCTAAAAT 59.153 37.037 0.00 0.00 0.00 1.82
638 649 7.930865 CAGATCTACTCCCTCCTTTCTAAAATG 59.069 40.741 0.00 0.00 0.00 2.32
639 650 6.561519 TCTACTCCCTCCTTTCTAAAATGG 57.438 41.667 0.00 0.00 0.00 3.16
640 651 6.269194 TCTACTCCCTCCTTTCTAAAATGGA 58.731 40.000 0.00 0.00 36.60 3.41
641 652 6.909158 TCTACTCCCTCCTTTCTAAAATGGAT 59.091 38.462 0.00 0.00 37.88 3.41
642 653 5.760131 ACTCCCTCCTTTCTAAAATGGATG 58.240 41.667 0.00 0.00 37.88 3.51
643 654 5.492524 ACTCCCTCCTTTCTAAAATGGATGA 59.507 40.000 0.00 0.00 37.88 2.92
644 655 5.755849 TCCCTCCTTTCTAAAATGGATGAC 58.244 41.667 0.00 0.00 37.88 3.06
645 656 5.252863 TCCCTCCTTTCTAAAATGGATGACA 59.747 40.000 0.00 0.00 37.88 3.58
646 657 5.951747 CCCTCCTTTCTAAAATGGATGACAA 59.048 40.000 0.00 0.00 37.88 3.18
647 658 6.127619 CCCTCCTTTCTAAAATGGATGACAAC 60.128 42.308 0.00 0.00 37.88 3.32
648 659 6.403636 CCTCCTTTCTAAAATGGATGACAACG 60.404 42.308 0.00 0.00 37.88 4.10
649 660 5.414454 TCCTTTCTAAAATGGATGACAACGG 59.586 40.000 0.00 0.00 34.64 4.44
650 661 5.414454 CCTTTCTAAAATGGATGACAACGGA 59.586 40.000 0.00 0.00 32.63 4.69
651 662 6.403636 CCTTTCTAAAATGGATGACAACGGAG 60.404 42.308 0.00 0.00 32.63 4.63
652 663 4.513442 TCTAAAATGGATGACAACGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
653 664 2.128771 AAATGGATGACAACGGAGGG 57.871 50.000 0.00 0.00 0.00 4.30
654 665 1.285280 AATGGATGACAACGGAGGGA 58.715 50.000 0.00 0.00 0.00 4.20
655 666 0.833287 ATGGATGACAACGGAGGGAG 59.167 55.000 0.00 0.00 0.00 4.30
656 667 0.544357 TGGATGACAACGGAGGGAGT 60.544 55.000 0.00 0.00 0.00 3.85
657 668 1.272816 TGGATGACAACGGAGGGAGTA 60.273 52.381 0.00 0.00 0.00 2.59
658 669 1.829222 GGATGACAACGGAGGGAGTAA 59.171 52.381 0.00 0.00 0.00 2.24
659 670 2.159085 GGATGACAACGGAGGGAGTAAG 60.159 54.545 0.00 0.00 0.00 2.34
660 671 2.297698 TGACAACGGAGGGAGTAAGA 57.702 50.000 0.00 0.00 0.00 2.10
661 672 2.816411 TGACAACGGAGGGAGTAAGAT 58.184 47.619 0.00 0.00 0.00 2.40
662 673 3.972133 TGACAACGGAGGGAGTAAGATA 58.028 45.455 0.00 0.00 0.00 1.98
663 674 3.952323 TGACAACGGAGGGAGTAAGATAG 59.048 47.826 0.00 0.00 0.00 2.08
664 675 4.205587 GACAACGGAGGGAGTAAGATAGA 58.794 47.826 0.00 0.00 0.00 1.98
665 676 4.607239 ACAACGGAGGGAGTAAGATAGAA 58.393 43.478 0.00 0.00 0.00 2.10
666 677 4.401837 ACAACGGAGGGAGTAAGATAGAAC 59.598 45.833 0.00 0.00 0.00 3.01
667 678 4.523168 ACGGAGGGAGTAAGATAGAACT 57.477 45.455 0.00 0.00 0.00 3.01
668 679 4.869451 ACGGAGGGAGTAAGATAGAACTT 58.131 43.478 0.00 0.00 0.00 2.66
669 680 5.270794 ACGGAGGGAGTAAGATAGAACTTT 58.729 41.667 0.00 0.00 0.00 2.66
670 681 5.720520 ACGGAGGGAGTAAGATAGAACTTTT 59.279 40.000 0.00 0.00 0.00 2.27
671 682 6.043411 CGGAGGGAGTAAGATAGAACTTTTG 58.957 44.000 0.00 0.00 0.00 2.44
708 720 7.789302 CGTCATGTATGAACAGATGTAAAATCG 59.211 37.037 0.00 0.00 39.49 3.34
713 725 8.655970 TGTATGAACAGATGTAAAATCGACAAG 58.344 33.333 0.00 0.00 0.00 3.16
722 734 2.604046 AAATCGACAAGCTAGCCGAT 57.396 45.000 17.43 17.43 42.66 4.18
733 745 3.944087 AGCTAGCCGATATTGAAATCCC 58.056 45.455 12.13 0.00 0.00 3.85
734 746 2.673368 GCTAGCCGATATTGAAATCCCG 59.327 50.000 2.29 0.00 0.00 5.14
735 747 2.185004 AGCCGATATTGAAATCCCGG 57.815 50.000 0.00 0.00 36.90 5.73
736 748 1.420138 AGCCGATATTGAAATCCCGGT 59.580 47.619 0.00 0.00 36.50 5.28
737 749 1.804748 GCCGATATTGAAATCCCGGTC 59.195 52.381 0.00 0.00 36.50 4.79
738 750 2.066262 CCGATATTGAAATCCCGGTCG 58.934 52.381 0.00 0.00 32.41 4.79
739 751 2.288579 CCGATATTGAAATCCCGGTCGA 60.289 50.000 0.00 0.00 32.41 4.20
740 752 2.729882 CGATATTGAAATCCCGGTCGAC 59.270 50.000 7.13 7.13 0.00 4.20
741 753 2.607631 TATTGAAATCCCGGTCGACC 57.392 50.000 25.28 25.28 0.00 4.79
789 802 0.967887 TTGCTCTCGAGACTCAGGGG 60.968 60.000 12.08 0.66 0.00 4.79
790 803 1.077357 GCTCTCGAGACTCAGGGGA 60.077 63.158 12.08 0.00 0.00 4.81
792 805 0.465460 CTCTCGAGACTCAGGGGAGG 60.465 65.000 12.08 0.00 45.81 4.30
793 806 1.454847 CTCGAGACTCAGGGGAGGG 60.455 68.421 6.58 0.00 45.81 4.30
794 807 3.151022 CGAGACTCAGGGGAGGGC 61.151 72.222 2.82 0.00 45.81 5.19
795 808 3.151022 GAGACTCAGGGGAGGGCG 61.151 72.222 0.00 0.00 45.81 6.13
796 809 3.966930 GAGACTCAGGGGAGGGCGT 62.967 68.421 0.00 0.00 45.81 5.68
797 810 3.462678 GACTCAGGGGAGGGCGTC 61.463 72.222 0.00 0.00 45.81 5.19
1161 1187 3.422303 ACGCGCGTGTGCATCATT 61.422 55.556 37.37 5.31 42.97 2.57
1533 1559 2.355481 GACGCGTTCTGGAACCGT 60.355 61.111 15.53 20.68 44.51 4.83
2100 2131 3.119743 ACGCTGCATTGTAGTTACGACTA 60.120 43.478 0.00 0.00 37.33 2.59
2232 2273 2.543777 TTTCTAGCGGCTTGTCACTT 57.456 45.000 8.26 0.00 0.00 3.16
2282 2323 3.114809 TCGTTTTCAAGCATTTGTGCTG 58.885 40.909 3.40 0.00 45.54 4.41
2283 2324 2.859538 CGTTTTCAAGCATTTGTGCTGT 59.140 40.909 3.40 0.00 45.54 4.40
2284 2325 3.306703 CGTTTTCAAGCATTTGTGCTGTT 59.693 39.130 3.40 0.00 45.54 3.16
2285 2326 4.548726 CGTTTTCAAGCATTTGTGCTGTTC 60.549 41.667 3.40 0.00 45.54 3.18
2286 2327 3.797451 TTCAAGCATTTGTGCTGTTCA 57.203 38.095 3.40 0.00 45.54 3.18
2287 2328 3.797451 TCAAGCATTTGTGCTGTTCAA 57.203 38.095 3.40 0.00 45.54 2.69
2288 2329 3.708890 TCAAGCATTTGTGCTGTTCAAG 58.291 40.909 3.40 0.00 45.54 3.02
2289 2330 3.130869 TCAAGCATTTGTGCTGTTCAAGT 59.869 39.130 3.40 0.00 45.54 3.16
2290 2331 4.337836 TCAAGCATTTGTGCTGTTCAAGTA 59.662 37.500 3.40 0.00 45.54 2.24
2292 2333 6.206438 TCAAGCATTTGTGCTGTTCAAGTATA 59.794 34.615 3.40 0.00 45.54 1.47
2293 2334 6.187125 AGCATTTGTGCTGTTCAAGTATAG 57.813 37.500 1.58 0.00 44.44 1.31
2294 2335 5.707298 AGCATTTGTGCTGTTCAAGTATAGT 59.293 36.000 1.58 0.00 44.44 2.12
2295 2336 6.024049 GCATTTGTGCTGTTCAAGTATAGTC 58.976 40.000 0.00 0.00 0.00 2.59
2296 2337 6.128172 GCATTTGTGCTGTTCAAGTATAGTCT 60.128 38.462 0.00 0.00 0.00 3.24
2297 2338 6.785488 TTTGTGCTGTTCAAGTATAGTCTG 57.215 37.500 0.00 0.00 0.00 3.51
2298 2339 4.820897 TGTGCTGTTCAAGTATAGTCTGG 58.179 43.478 0.00 0.00 0.00 3.86
2426 2538 3.507103 TGGTTGCCATTGAATGATTCG 57.493 42.857 6.76 0.00 0.00 3.34
2511 2623 2.896685 GAGAGTGATGTAGCCTAGCCAT 59.103 50.000 0.00 0.00 0.00 4.40
2743 2859 1.984026 CCAGGCCCAATGAACCACC 60.984 63.158 0.00 0.00 0.00 4.61
2744 2860 2.035626 AGGCCCAATGAACCACCG 59.964 61.111 0.00 0.00 0.00 4.94
2745 2861 2.034999 GGCCCAATGAACCACCGA 59.965 61.111 0.00 0.00 0.00 4.69
2746 2862 1.379843 GGCCCAATGAACCACCGAT 60.380 57.895 0.00 0.00 0.00 4.18
2747 2863 0.970427 GGCCCAATGAACCACCGATT 60.970 55.000 0.00 0.00 0.00 3.34
2748 2864 0.455815 GCCCAATGAACCACCGATTC 59.544 55.000 0.00 0.00 0.00 2.52
2750 2866 2.378038 CCCAATGAACCACCGATTCAT 58.622 47.619 0.00 0.00 46.40 2.57
2751 2867 2.358898 CCCAATGAACCACCGATTCATC 59.641 50.000 0.97 0.00 44.24 2.92
2752 2868 2.358898 CCAATGAACCACCGATTCATCC 59.641 50.000 0.97 0.00 44.24 3.51
2753 2869 3.282021 CAATGAACCACCGATTCATCCT 58.718 45.455 0.97 0.00 44.24 3.24
2754 2870 2.691409 TGAACCACCGATTCATCCTC 57.309 50.000 0.00 0.00 31.11 3.71
2755 2871 1.209504 TGAACCACCGATTCATCCTCC 59.790 52.381 0.00 0.00 31.11 4.30
2756 2872 1.486726 GAACCACCGATTCATCCTCCT 59.513 52.381 0.00 0.00 0.00 3.69
2757 2873 1.123928 ACCACCGATTCATCCTCCTC 58.876 55.000 0.00 0.00 0.00 3.71
2758 2874 1.343478 ACCACCGATTCATCCTCCTCT 60.343 52.381 0.00 0.00 0.00 3.69
2759 2875 1.342819 CCACCGATTCATCCTCCTCTC 59.657 57.143 0.00 0.00 0.00 3.20
2760 2876 2.034878 CACCGATTCATCCTCCTCTCA 58.965 52.381 0.00 0.00 0.00 3.27
2761 2877 2.035632 ACCGATTCATCCTCCTCTCAC 58.964 52.381 0.00 0.00 0.00 3.51
2762 2878 2.315176 CCGATTCATCCTCCTCTCACT 58.685 52.381 0.00 0.00 0.00 3.41
2763 2879 2.697751 CCGATTCATCCTCCTCTCACTT 59.302 50.000 0.00 0.00 0.00 3.16
2764 2880 3.492309 CCGATTCATCCTCCTCTCACTTG 60.492 52.174 0.00 0.00 0.00 3.16
2765 2881 3.131933 CGATTCATCCTCCTCTCACTTGT 59.868 47.826 0.00 0.00 0.00 3.16
2766 2882 4.692228 GATTCATCCTCCTCTCACTTGTC 58.308 47.826 0.00 0.00 0.00 3.18
2767 2883 2.461695 TCATCCTCCTCTCACTTGTCC 58.538 52.381 0.00 0.00 0.00 4.02
2768 2884 2.043664 TCATCCTCCTCTCACTTGTCCT 59.956 50.000 0.00 0.00 0.00 3.85
2769 2885 2.704190 TCCTCCTCTCACTTGTCCTT 57.296 50.000 0.00 0.00 0.00 3.36
2770 2886 2.530701 TCCTCCTCTCACTTGTCCTTC 58.469 52.381 0.00 0.00 0.00 3.46
2771 2887 2.110899 TCCTCCTCTCACTTGTCCTTCT 59.889 50.000 0.00 0.00 0.00 2.85
2772 2888 3.333980 TCCTCCTCTCACTTGTCCTTCTA 59.666 47.826 0.00 0.00 0.00 2.10
2773 2889 4.017037 TCCTCCTCTCACTTGTCCTTCTAT 60.017 45.833 0.00 0.00 0.00 1.98
2774 2890 4.714308 CCTCCTCTCACTTGTCCTTCTATT 59.286 45.833 0.00 0.00 0.00 1.73
2775 2891 5.894393 CCTCCTCTCACTTGTCCTTCTATTA 59.106 44.000 0.00 0.00 0.00 0.98
2776 2892 6.553100 CCTCCTCTCACTTGTCCTTCTATTAT 59.447 42.308 0.00 0.00 0.00 1.28
2777 2893 7.070571 CCTCCTCTCACTTGTCCTTCTATTATT 59.929 40.741 0.00 0.00 0.00 1.40
2778 2894 8.012957 TCCTCTCACTTGTCCTTCTATTATTC 57.987 38.462 0.00 0.00 0.00 1.75
2779 2895 7.070074 TCCTCTCACTTGTCCTTCTATTATTCC 59.930 40.741 0.00 0.00 0.00 3.01
2780 2896 7.070571 CCTCTCACTTGTCCTTCTATTATTCCT 59.929 40.741 0.00 0.00 0.00 3.36
2781 2897 8.380742 TCTCACTTGTCCTTCTATTATTCCTT 57.619 34.615 0.00 0.00 0.00 3.36
2882 3166 6.722301 TCGTGATTACTTGTATAAGGAGTCG 58.278 40.000 4.12 1.93 36.53 4.18
2925 3209 8.598916 TCATCAACCTTAATTTACTAGGTCACA 58.401 33.333 0.00 0.00 41.33 3.58
2972 3256 0.546122 AAGAACACTGTCCACCTGCA 59.454 50.000 0.00 0.00 0.00 4.41
2980 3264 1.542915 CTGTCCACCTGCAATCCTTTG 59.457 52.381 0.00 0.00 35.85 2.77
3020 3304 0.655048 GCTACGTTGTTTTCGCGCAA 60.655 50.000 8.75 0.00 0.00 4.85
3027 3311 0.814410 TGTTTTCGCGCAACCTACCA 60.814 50.000 8.75 0.00 0.00 3.25
3131 3415 7.228507 TGCCATGTTGAGTTATGATATTGTACC 59.771 37.037 0.00 0.00 0.00 3.34
3156 3440 0.887247 AATGCCTGTGCGTTGCAATA 59.113 45.000 0.59 0.00 44.90 1.90
3164 3448 3.199677 TGTGCGTTGCAATAGGGTATAC 58.800 45.455 0.59 0.00 41.47 1.47
3203 3487 4.705023 AGTTTGTGATTTACCTGCCCATAC 59.295 41.667 0.00 0.00 0.00 2.39
3210 3494 6.546034 GTGATTTACCTGCCCATACTAATGTT 59.454 38.462 0.00 0.00 0.00 2.71
3218 3502 7.665559 ACCTGCCCATACTAATGTTATTATGTG 59.334 37.037 8.43 1.20 29.34 3.21
3285 3569 9.447040 GTTTGATGAGAAGTTTGGTAAGTAAAC 57.553 33.333 0.00 0.00 38.09 2.01
3364 3648 1.149854 GTTGGACGAAGGGGTGGTT 59.850 57.895 0.00 0.00 0.00 3.67
3404 3759 7.226720 CACGGAACCTTAGTATTGCTTAATGAT 59.773 37.037 0.00 0.00 0.00 2.45
3528 3883 6.603940 ATTGTTTGGTATGGTGTTGCTATT 57.396 33.333 0.00 0.00 0.00 1.73
3581 3936 9.447279 TCTTAATGTCTCCCTTCTTAATATGGA 57.553 33.333 0.00 0.00 0.00 3.41
3584 3939 8.753497 AATGTCTCCCTTCTTAATATGGAAAC 57.247 34.615 0.00 0.00 0.00 2.78
3599 3954 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3600 3955 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3601 3956 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3602 3957 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3603 3958 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3604 3959 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3605 3960 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3606 3961 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3607 3962 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3608 3963 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3609 3964 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3610 3965 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3611 3966 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3612 3967 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3613 3968 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3614 3969 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3615 3970 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3616 3971 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3617 3972 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3618 3973 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3619 3974 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3620 3975 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
3621 3976 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
3622 3977 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
3623 3978 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
3624 3979 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
3625 3980 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
3626 3981 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
3627 3982 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
3628 3983 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
3629 3984 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
3630 3985 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
3631 3986 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
3632 3987 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
3633 3988 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
3634 3989 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
3635 3990 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
3636 3991 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
3641 3996 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3642 3997 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3643 3998 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3644 3999 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3645 4000 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3646 4001 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3647 4002 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3648 4003 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3649 4004 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3650 4005 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
3651 4006 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
3652 4007 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
3653 4008 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
3654 4009 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
3655 4010 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3656 4011 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3657 4012 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3658 4013 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3659 4014 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3660 4015 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3681 4036 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
3682 4037 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
3683 4038 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
3684 4039 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
3685 4040 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
3686 4041 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
3687 4042 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
3688 4043 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
3689 4044 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
3716 4071 3.072184 CCCTTCTAGCTGCATCCATAGTT 59.928 47.826 1.02 0.00 0.00 2.24
3742 4097 8.743085 ATCACATGAAAATAGTTATGCTGTCT 57.257 30.769 0.00 0.00 0.00 3.41
3881 4236 6.463995 TTGGATTCTTTGTACAACTTGCTT 57.536 33.333 8.07 0.00 0.00 3.91
3926 4281 4.101585 CCCCACATGATTAGTAGCTCAAGA 59.898 45.833 0.00 0.00 0.00 3.02
4080 4435 0.779997 ATTTTGCTCCCCTCAGTGGT 59.220 50.000 0.00 0.00 0.00 4.16
4320 4675 0.252375 AATGGCAGTTGGATGGGCTT 60.252 50.000 0.00 0.00 0.00 4.35
4337 4692 2.959030 GGCTTGAGAGGGAACAAAACTT 59.041 45.455 0.00 0.00 0.00 2.66
4387 4742 2.046023 TGACGGAATGGCAGCAGG 60.046 61.111 0.00 0.00 0.00 4.85
4388 4743 3.512516 GACGGAATGGCAGCAGGC 61.513 66.667 0.00 0.00 43.74 4.85
4499 4864 9.799106 TTCTCATTAGGTTTCTCTCTTTTCATT 57.201 29.630 0.00 0.00 0.00 2.57
4606 5013 8.804912 AGAAAATCTGCTTACTTCTCATTCAT 57.195 30.769 0.00 0.00 0.00 2.57
4609 5016 9.678260 AAAATCTGCTTACTTCTCATTCATACT 57.322 29.630 0.00 0.00 0.00 2.12
4921 5335 3.819245 TGCACTAAGGGCAGTGTTT 57.181 47.368 5.49 0.00 46.31 2.83
4922 5336 2.065899 TGCACTAAGGGCAGTGTTTT 57.934 45.000 5.49 0.00 46.31 2.43
4963 5381 7.040686 ACACAACATCTATTTTGGACTTGGTAC 60.041 37.037 0.00 0.00 0.00 3.34
5300 5928 7.375053 TGGGACACTTTTAGCATTGAAATTAC 58.625 34.615 0.00 0.00 0.00 1.89
5301 5929 6.811665 GGGACACTTTTAGCATTGAAATTACC 59.188 38.462 0.00 0.00 0.00 2.85
5325 5953 4.525487 AGCCACACTGTCATCATTGAAATT 59.475 37.500 0.00 0.00 32.48 1.82
5338 5966 4.022416 TCATTGAAATTACCACAGCCACAC 60.022 41.667 0.00 0.00 0.00 3.82
5349 5977 2.913777 CAGCCACACTGTCATCATTG 57.086 50.000 0.00 0.00 41.86 2.82
5350 5978 2.429478 CAGCCACACTGTCATCATTGA 58.571 47.619 0.00 0.00 41.86 2.57
5351 5979 2.815503 CAGCCACACTGTCATCATTGAA 59.184 45.455 0.00 0.00 41.86 2.69
5352 5980 3.253921 CAGCCACACTGTCATCATTGAAA 59.746 43.478 0.00 0.00 41.86 2.69
5353 5981 4.082408 CAGCCACACTGTCATCATTGAAAT 60.082 41.667 0.00 0.00 41.86 2.17
5354 5982 4.525487 AGCCACACTGTCATCATTGAAATT 59.475 37.500 0.00 0.00 32.48 1.82
5355 5983 5.711506 AGCCACACTGTCATCATTGAAATTA 59.288 36.000 0.00 0.00 32.48 1.40
5356 5984 5.801947 GCCACACTGTCATCATTGAAATTAC 59.198 40.000 0.00 0.00 32.48 1.89
5357 5985 6.324819 CCACACTGTCATCATTGAAATTACC 58.675 40.000 0.00 0.00 32.48 2.85
5358 5986 6.072008 CCACACTGTCATCATTGAAATTACCA 60.072 38.462 0.00 0.00 32.48 3.25
5359 5987 6.803320 CACACTGTCATCATTGAAATTACCAC 59.197 38.462 0.00 0.00 32.48 4.16
5360 5988 6.489700 ACACTGTCATCATTGAAATTACCACA 59.510 34.615 0.00 0.00 32.48 4.17
5361 5989 7.025365 CACTGTCATCATTGAAATTACCACAG 58.975 38.462 0.00 0.00 32.48 3.66
5362 5990 5.953183 TGTCATCATTGAAATTACCACAGC 58.047 37.500 0.00 0.00 32.48 4.40
5363 5991 5.105797 TGTCATCATTGAAATTACCACAGCC 60.106 40.000 0.00 0.00 32.48 4.85
5364 5992 5.015515 TCATCATTGAAATTACCACAGCCA 58.984 37.500 0.00 0.00 0.00 4.75
5365 5993 4.782019 TCATTGAAATTACCACAGCCAC 57.218 40.909 0.00 0.00 0.00 5.01
5366 5994 4.148079 TCATTGAAATTACCACAGCCACA 58.852 39.130 0.00 0.00 0.00 4.17
5367 5995 4.022416 TCATTGAAATTACCACAGCCACAC 60.022 41.667 0.00 0.00 0.00 3.82
5437 6065 4.012374 CACTCTGGCACCTGTCATTTATT 58.988 43.478 0.00 0.00 0.00 1.40
5669 6323 5.237815 AGATAGAAGCACATTGTGAAACGA 58.762 37.500 20.77 6.85 42.39 3.85
5719 6373 1.051812 ATGGACCCTCTTATCTGGCG 58.948 55.000 0.00 0.00 0.00 5.69
5782 6436 3.554129 GGCATTTTTAGTTGTGTGGGGTC 60.554 47.826 0.00 0.00 0.00 4.46
5839 6499 2.076863 CTCTTAAGAAACTGCCACCCG 58.923 52.381 6.63 0.00 0.00 5.28
5917 6577 0.693622 TTCGCCAGGGAACATTACCA 59.306 50.000 0.00 0.00 31.71 3.25
5998 6658 2.726241 GCTGCCATTGTTCGAAAAAGTC 59.274 45.455 6.93 0.00 0.00 3.01
6041 6701 4.634443 GCTATGGACATCAAAACTAACCGT 59.366 41.667 0.00 0.00 0.00 4.83
6158 6821 2.033194 GGGCCTCTCGTCGGTTTTG 61.033 63.158 0.84 0.00 0.00 2.44
6207 6899 4.895297 CCCAATTATGGCACTCTTTATGGT 59.105 41.667 0.00 0.00 46.09 3.55
6208 6900 5.363580 CCCAATTATGGCACTCTTTATGGTT 59.636 40.000 0.00 0.00 46.09 3.67
6209 6901 6.461509 CCCAATTATGGCACTCTTTATGGTTC 60.462 42.308 0.00 0.00 46.09 3.62
6210 6902 6.322201 CCAATTATGGCACTCTTTATGGTTCT 59.678 38.462 0.00 0.00 40.58 3.01
6211 6903 7.420800 CAATTATGGCACTCTTTATGGTTCTC 58.579 38.462 0.00 0.00 0.00 2.87
6212 6904 4.851639 ATGGCACTCTTTATGGTTCTCT 57.148 40.909 0.00 0.00 0.00 3.10
6213 6905 5.957771 ATGGCACTCTTTATGGTTCTCTA 57.042 39.130 0.00 0.00 0.00 2.43
6214 6906 5.086104 TGGCACTCTTTATGGTTCTCTAC 57.914 43.478 0.00 0.00 0.00 2.59
6215 6907 4.777896 TGGCACTCTTTATGGTTCTCTACT 59.222 41.667 0.00 0.00 0.00 2.57
6216 6908 5.248477 TGGCACTCTTTATGGTTCTCTACTT 59.752 40.000 0.00 0.00 0.00 2.24
6217 6909 5.582665 GGCACTCTTTATGGTTCTCTACTTG 59.417 44.000 0.00 0.00 0.00 3.16
6218 6910 6.398918 GCACTCTTTATGGTTCTCTACTTGA 58.601 40.000 0.00 0.00 0.00 3.02
6219 6911 6.874134 GCACTCTTTATGGTTCTCTACTTGAA 59.126 38.462 0.00 0.00 0.00 2.69
6220 6912 7.387948 GCACTCTTTATGGTTCTCTACTTGAAA 59.612 37.037 0.00 0.00 0.00 2.69
6221 6913 8.930760 CACTCTTTATGGTTCTCTACTTGAAAG 58.069 37.037 0.00 0.00 0.00 2.62
6222 6914 7.604545 ACTCTTTATGGTTCTCTACTTGAAAGC 59.395 37.037 0.00 0.00 0.00 3.51
6223 6915 7.680730 TCTTTATGGTTCTCTACTTGAAAGCT 58.319 34.615 0.00 0.00 0.00 3.74
6224 6916 8.157476 TCTTTATGGTTCTCTACTTGAAAGCTT 58.843 33.333 0.00 0.00 0.00 3.74
6225 6917 7.907214 TTATGGTTCTCTACTTGAAAGCTTC 57.093 36.000 0.00 0.00 0.00 3.86
6226 6918 5.290493 TGGTTCTCTACTTGAAAGCTTCA 57.710 39.130 0.00 0.00 38.04 3.02
6227 6919 5.300752 TGGTTCTCTACTTGAAAGCTTCAG 58.699 41.667 0.00 0.00 41.38 3.02
6228 6920 5.163301 TGGTTCTCTACTTGAAAGCTTCAGT 60.163 40.000 0.00 5.28 41.38 3.41
6229 6921 5.407084 GGTTCTCTACTTGAAAGCTTCAGTC 59.593 44.000 0.00 0.00 41.38 3.51
6230 6922 5.791336 TCTCTACTTGAAAGCTTCAGTCA 57.209 39.130 0.00 0.00 41.38 3.41
6231 6923 6.352016 TCTCTACTTGAAAGCTTCAGTCAT 57.648 37.500 0.00 0.00 41.38 3.06
6232 6924 7.468141 TCTCTACTTGAAAGCTTCAGTCATA 57.532 36.000 0.00 0.00 41.38 2.15
6233 6925 8.072321 TCTCTACTTGAAAGCTTCAGTCATAT 57.928 34.615 0.00 0.00 41.38 1.78
6234 6926 7.978414 TCTCTACTTGAAAGCTTCAGTCATATG 59.022 37.037 0.00 0.00 41.38 1.78
6235 6927 7.044181 TCTACTTGAAAGCTTCAGTCATATGG 58.956 38.462 0.00 0.00 41.38 2.74
6236 6928 4.397417 ACTTGAAAGCTTCAGTCATATGGC 59.603 41.667 0.00 0.00 41.38 4.40
6237 6929 4.226427 TGAAAGCTTCAGTCATATGGCT 57.774 40.909 3.33 3.33 34.08 4.75
6239 6931 1.964552 AGCTTCAGTCATATGGCTGC 58.035 50.000 28.80 19.08 46.71 5.25
6240 6932 1.211212 AGCTTCAGTCATATGGCTGCA 59.789 47.619 28.80 19.54 46.71 4.41
6241 6933 1.602851 GCTTCAGTCATATGGCTGCAG 59.397 52.381 28.80 27.59 46.71 4.41
6242 6934 2.219458 CTTCAGTCATATGGCTGCAGG 58.781 52.381 28.80 17.66 46.71 4.85
6243 6935 0.179037 TCAGTCATATGGCTGCAGGC 60.179 55.000 31.92 31.92 46.71 4.85
6260 6952 0.108138 GGCCTGCAGTATCTGTTCGT 60.108 55.000 13.81 0.00 33.43 3.85
6316 7008 8.617290 AGTGACGTGGAATAAGTTTCTAATTT 57.383 30.769 0.00 0.00 0.00 1.82
6343 7035 3.304721 TGCATTGGTGGTGCAGGC 61.305 61.111 0.00 0.00 46.76 4.85
6432 7124 4.037222 TGACTATATGTGGGGAAAGCAGA 58.963 43.478 0.00 0.00 0.00 4.26
6445 7137 4.113354 GGAAAGCAGATGGTAGTTCTACG 58.887 47.826 4.26 0.00 0.00 3.51
6501 7193 2.728846 GCGCAATTGTGATGAATCGTGT 60.729 45.455 22.87 0.00 0.00 4.49
6599 7291 1.609208 GATGGTCAAGTTGTGCTGGT 58.391 50.000 2.11 0.00 0.00 4.00
6606 7298 2.159448 TCAAGTTGTGCTGGTGTTTTCG 60.159 45.455 2.11 0.00 0.00 3.46
6691 7390 6.434340 GTGGATGGAAGGAACATTTAAACTCT 59.566 38.462 0.00 0.00 0.00 3.24
6692 7391 7.610305 GTGGATGGAAGGAACATTTAAACTCTA 59.390 37.037 0.00 0.00 0.00 2.43
6693 7392 8.336235 TGGATGGAAGGAACATTTAAACTCTAT 58.664 33.333 0.00 0.00 0.00 1.98
6694 7393 9.190317 GGATGGAAGGAACATTTAAACTCTATT 57.810 33.333 0.00 0.00 0.00 1.73
6780 7487 5.705609 TTTGGTTCTTGATTTGACTAGCC 57.294 39.130 0.00 0.00 0.00 3.93
6788 7495 8.349983 GTTCTTGATTTGACTAGCCAAACTTAA 58.650 33.333 6.34 2.36 38.65 1.85
6889 8025 6.939730 TGCTTGTGTCTGACTTATATTTCCAA 59.060 34.615 9.51 0.00 0.00 3.53
6891 8031 7.626452 GCTTGTGTCTGACTTATATTTCCAACC 60.626 40.741 9.51 0.00 0.00 3.77
6894 8034 4.272748 GTCTGACTTATATTTCCAACCGGC 59.727 45.833 0.00 0.00 0.00 6.13
6923 8068 6.729690 TGAAATGCCCCCAATTTATTAGAG 57.270 37.500 0.00 0.00 0.00 2.43
6972 8335 0.902516 AGCTTGAGGACGGAGAAGCT 60.903 55.000 0.00 0.00 44.95 3.74
6975 8338 0.891373 TTGAGGACGGAGAAGCTCAG 59.109 55.000 0.00 0.00 31.08 3.35
6986 8349 4.262121 CGGAGAAGCTCAGATGATCTTCAT 60.262 45.833 21.88 11.33 45.01 2.57
7089 8453 0.179018 CCGATGGGGGAGGATTGAAC 60.179 60.000 0.00 0.00 0.00 3.18
7090 8454 0.546122 CGATGGGGGAGGATTGAACA 59.454 55.000 0.00 0.00 0.00 3.18
7096 8460 2.017049 GGGGAGGATTGAACAATCACG 58.983 52.381 23.03 0.00 46.77 4.35
7121 8485 0.464452 AGCCAGTACCTATGGTTCGC 59.536 55.000 1.96 0.00 40.17 4.70
7124 8488 0.742505 CAGTACCTATGGTTCGCGGA 59.257 55.000 6.13 0.00 37.09 5.54
7265 8653 6.916909 TGATCTATTCCTCCTCTCTAGTGTT 58.083 40.000 0.00 0.00 0.00 3.32
7303 8692 3.500448 TGGTTGTTCCTGTGCTCAATA 57.500 42.857 0.00 0.00 37.07 1.90
7320 8709 9.132521 GTGCTCAATAAATATAAATCATGTGGC 57.867 33.333 0.00 0.00 0.00 5.01
7321 8710 9.081204 TGCTCAATAAATATAAATCATGTGGCT 57.919 29.630 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.659172 CCCACTTCCTTGCCGCCA 62.659 66.667 0.00 0.00 0.00 5.69
14 16 1.346722 CGGGAAGACAAGTACCCACTT 59.653 52.381 0.00 0.00 46.15 3.16
42 48 3.243134 CGCCGGAGAAACAAAAACCTAAA 60.243 43.478 5.05 0.00 0.00 1.85
95 101 6.428159 GGAGACTGCAGAGAACTTATTTCAAA 59.572 38.462 23.35 0.00 36.57 2.69
99 105 5.753721 AGGAGACTGCAGAGAACTTATTT 57.246 39.130 23.35 0.00 41.13 1.40
112 118 1.751924 ACATCGAGGTAAGGAGACTGC 59.248 52.381 0.00 0.00 42.68 4.40
114 120 2.290464 CGACATCGAGGTAAGGAGACT 58.710 52.381 1.11 0.00 42.89 3.24
121 129 3.312697 CAGATCAGACGACATCGAGGTAA 59.687 47.826 1.11 0.00 43.02 2.85
132 140 2.761195 CCGACGCCAGATCAGACGA 61.761 63.158 0.00 0.00 0.00 4.20
160 168 1.351017 TCTGGGGACACAAATCTCACC 59.649 52.381 0.00 0.00 35.60 4.02
206 215 4.124238 CTCCTGGAAAAACACACGAACTA 58.876 43.478 0.00 0.00 0.00 2.24
218 227 1.892329 GCCAATGGCTCTCCTGGAAAA 60.892 52.381 18.47 0.00 46.69 2.29
232 241 1.290955 CACCAAGCACCAGCCAATG 59.709 57.895 0.00 0.00 43.56 2.82
233 242 1.152483 ACACCAAGCACCAGCCAAT 60.152 52.632 0.00 0.00 43.56 3.16
242 251 0.602638 CTAAGTCGCCACACCAAGCA 60.603 55.000 0.00 0.00 0.00 3.91
244 253 1.270094 TGTCTAAGTCGCCACACCAAG 60.270 52.381 0.00 0.00 0.00 3.61
260 269 4.346418 AGAACAACACAGAAGAGGATGTCT 59.654 41.667 0.00 0.00 36.94 3.41
267 276 4.437239 AGACACAGAACAACACAGAAGAG 58.563 43.478 0.00 0.00 0.00 2.85
287 296 1.549170 GCTAGAGAAACCGGGTCAAGA 59.451 52.381 6.32 0.00 0.00 3.02
320 329 1.063616 CTGGCTTGCGATTCATCACTG 59.936 52.381 0.00 0.00 0.00 3.66
321 330 1.339438 ACTGGCTTGCGATTCATCACT 60.339 47.619 0.00 0.00 0.00 3.41
328 337 3.199764 GCAAAACTGGCTTGCGATT 57.800 47.368 0.00 0.00 39.78 3.34
339 348 4.828939 TGGATCATCACTTCAAGCAAAACT 59.171 37.500 0.00 0.00 0.00 2.66
350 359 4.098960 GCAACATTGGATGGATCATCACTT 59.901 41.667 9.68 0.00 42.13 3.16
351 360 3.635373 GCAACATTGGATGGATCATCACT 59.365 43.478 9.68 0.00 42.13 3.41
358 367 4.141801 CCATTGAAGCAACATTGGATGGAT 60.142 41.667 14.57 0.00 41.16 3.41
363 372 4.686191 AAACCATTGAAGCAACATTGGA 57.314 36.364 21.85 0.00 41.16 3.53
366 375 8.370182 AGATCTAAAAACCATTGAAGCAACATT 58.630 29.630 0.00 0.00 0.00 2.71
381 390 5.721232 TCCCTTGAGACGAGATCTAAAAAC 58.279 41.667 0.00 0.00 38.00 2.43
404 413 4.529897 TGAAGAATGCAATAGCCACTCAT 58.470 39.130 0.00 0.00 41.13 2.90
405 414 3.954200 TGAAGAATGCAATAGCCACTCA 58.046 40.909 0.00 0.00 41.13 3.41
452 461 2.162208 CAGCAAAGAAAAGCGATGCCTA 59.838 45.455 0.00 0.00 37.73 3.93
456 465 2.727798 CCAACAGCAAAGAAAAGCGATG 59.272 45.455 0.00 0.00 35.48 3.84
487 496 1.533625 CCTTGCCGGAGATTGAAACA 58.466 50.000 5.05 0.00 33.16 2.83
488 497 0.171231 GCCTTGCCGGAGATTGAAAC 59.829 55.000 5.05 0.00 33.16 2.78
503 512 5.353394 TTTCTCTGATTATACACCGCCTT 57.647 39.130 0.00 0.00 0.00 4.35
504 513 5.353394 TTTTCTCTGATTATACACCGCCT 57.647 39.130 0.00 0.00 0.00 5.52
569 580 4.162320 ACAACTGGATGGATGTAGAACGAT 59.838 41.667 0.00 0.00 0.00 3.73
579 590 5.919348 AATGGATAGACAACTGGATGGAT 57.081 39.130 0.00 0.00 0.00 3.41
580 591 5.715439 AAATGGATAGACAACTGGATGGA 57.285 39.130 0.00 0.00 0.00 3.41
581 592 7.941238 AGATAAAATGGATAGACAACTGGATGG 59.059 37.037 0.00 0.00 0.00 3.51
582 593 8.915057 AGATAAAATGGATAGACAACTGGATG 57.085 34.615 0.00 0.00 0.00 3.51
602 613 8.683445 AGGAGGGAGTAGATCTGATTAAGATAA 58.317 37.037 5.18 0.00 46.12 1.75
606 617 7.508977 AGAAAGGAGGGAGTAGATCTGATTAAG 59.491 40.741 5.18 0.00 0.00 1.85
607 618 7.366226 AGAAAGGAGGGAGTAGATCTGATTAA 58.634 38.462 5.18 0.00 0.00 1.40
608 619 6.928202 AGAAAGGAGGGAGTAGATCTGATTA 58.072 40.000 5.18 0.00 0.00 1.75
609 620 5.787327 AGAAAGGAGGGAGTAGATCTGATT 58.213 41.667 5.18 0.00 0.00 2.57
610 621 5.417170 AGAAAGGAGGGAGTAGATCTGAT 57.583 43.478 5.18 0.00 0.00 2.90
611 622 4.890499 AGAAAGGAGGGAGTAGATCTGA 57.110 45.455 5.18 0.00 0.00 3.27
612 623 7.425224 TTTTAGAAAGGAGGGAGTAGATCTG 57.575 40.000 5.18 0.00 0.00 2.90
613 624 7.071824 CCATTTTAGAAAGGAGGGAGTAGATCT 59.928 40.741 0.00 0.00 0.00 2.75
614 625 7.071321 TCCATTTTAGAAAGGAGGGAGTAGATC 59.929 40.741 0.00 0.00 29.72 2.75
615 626 6.909158 TCCATTTTAGAAAGGAGGGAGTAGAT 59.091 38.462 0.00 0.00 29.72 1.98
616 627 6.269194 TCCATTTTAGAAAGGAGGGAGTAGA 58.731 40.000 0.00 0.00 29.72 2.59
617 628 6.561519 TCCATTTTAGAAAGGAGGGAGTAG 57.438 41.667 0.00 0.00 29.72 2.57
618 629 6.676632 TCATCCATTTTAGAAAGGAGGGAGTA 59.323 38.462 2.62 0.00 36.20 2.59
619 630 5.492524 TCATCCATTTTAGAAAGGAGGGAGT 59.507 40.000 2.62 0.00 36.20 3.85
620 631 5.825151 GTCATCCATTTTAGAAAGGAGGGAG 59.175 44.000 2.62 0.00 36.20 4.30
621 632 5.252863 TGTCATCCATTTTAGAAAGGAGGGA 59.747 40.000 2.62 0.00 36.20 4.20
622 633 5.509498 TGTCATCCATTTTAGAAAGGAGGG 58.491 41.667 2.62 0.00 36.20 4.30
623 634 6.403636 CGTTGTCATCCATTTTAGAAAGGAGG 60.404 42.308 0.00 0.00 36.20 4.30
624 635 6.403636 CCGTTGTCATCCATTTTAGAAAGGAG 60.404 42.308 0.00 0.00 36.20 3.69
625 636 5.414454 CCGTTGTCATCCATTTTAGAAAGGA 59.586 40.000 0.00 0.00 37.08 3.36
626 637 5.414454 TCCGTTGTCATCCATTTTAGAAAGG 59.586 40.000 0.00 0.00 0.00 3.11
627 638 6.403636 CCTCCGTTGTCATCCATTTTAGAAAG 60.404 42.308 0.00 0.00 0.00 2.62
628 639 5.414454 CCTCCGTTGTCATCCATTTTAGAAA 59.586 40.000 0.00 0.00 0.00 2.52
629 640 4.941263 CCTCCGTTGTCATCCATTTTAGAA 59.059 41.667 0.00 0.00 0.00 2.10
630 641 4.513442 CCTCCGTTGTCATCCATTTTAGA 58.487 43.478 0.00 0.00 0.00 2.10
631 642 3.627577 CCCTCCGTTGTCATCCATTTTAG 59.372 47.826 0.00 0.00 0.00 1.85
632 643 3.264706 TCCCTCCGTTGTCATCCATTTTA 59.735 43.478 0.00 0.00 0.00 1.52
633 644 2.041081 TCCCTCCGTTGTCATCCATTTT 59.959 45.455 0.00 0.00 0.00 1.82
634 645 1.633432 TCCCTCCGTTGTCATCCATTT 59.367 47.619 0.00 0.00 0.00 2.32
635 646 1.210478 CTCCCTCCGTTGTCATCCATT 59.790 52.381 0.00 0.00 0.00 3.16
636 647 0.833287 CTCCCTCCGTTGTCATCCAT 59.167 55.000 0.00 0.00 0.00 3.41
637 648 0.544357 ACTCCCTCCGTTGTCATCCA 60.544 55.000 0.00 0.00 0.00 3.41
638 649 1.481871 TACTCCCTCCGTTGTCATCC 58.518 55.000 0.00 0.00 0.00 3.51
639 650 2.758979 TCTTACTCCCTCCGTTGTCATC 59.241 50.000 0.00 0.00 0.00 2.92
640 651 2.816411 TCTTACTCCCTCCGTTGTCAT 58.184 47.619 0.00 0.00 0.00 3.06
641 652 2.297698 TCTTACTCCCTCCGTTGTCA 57.702 50.000 0.00 0.00 0.00 3.58
642 653 4.205587 TCTATCTTACTCCCTCCGTTGTC 58.794 47.826 0.00 0.00 0.00 3.18
643 654 4.246712 TCTATCTTACTCCCTCCGTTGT 57.753 45.455 0.00 0.00 0.00 3.32
644 655 4.645588 AGTTCTATCTTACTCCCTCCGTTG 59.354 45.833 0.00 0.00 0.00 4.10
645 656 4.869451 AGTTCTATCTTACTCCCTCCGTT 58.131 43.478 0.00 0.00 0.00 4.44
646 657 4.523168 AGTTCTATCTTACTCCCTCCGT 57.477 45.455 0.00 0.00 0.00 4.69
647 658 5.855740 AAAGTTCTATCTTACTCCCTCCG 57.144 43.478 0.00 0.00 0.00 4.63
648 659 6.819146 CACAAAAGTTCTATCTTACTCCCTCC 59.181 42.308 0.00 0.00 0.00 4.30
649 660 7.612677 TCACAAAAGTTCTATCTTACTCCCTC 58.387 38.462 0.00 0.00 0.00 4.30
650 661 7.554959 TCACAAAAGTTCTATCTTACTCCCT 57.445 36.000 0.00 0.00 0.00 4.20
651 662 8.617290 TTTCACAAAAGTTCTATCTTACTCCC 57.383 34.615 0.00 0.00 0.00 4.30
652 663 9.880064 GTTTTCACAAAAGTTCTATCTTACTCC 57.120 33.333 0.00 0.00 0.00 3.85
653 664 9.582223 CGTTTTCACAAAAGTTCTATCTTACTC 57.418 33.333 0.00 0.00 0.00 2.59
654 665 8.068380 GCGTTTTCACAAAAGTTCTATCTTACT 58.932 33.333 0.00 0.00 0.00 2.24
655 666 7.853929 TGCGTTTTCACAAAAGTTCTATCTTAC 59.146 33.333 0.00 0.00 0.00 2.34
656 667 7.853929 GTGCGTTTTCACAAAAGTTCTATCTTA 59.146 33.333 0.00 0.00 36.97 2.10
657 668 6.691388 GTGCGTTTTCACAAAAGTTCTATCTT 59.309 34.615 0.00 0.00 36.97 2.40
658 669 6.199393 GTGCGTTTTCACAAAAGTTCTATCT 58.801 36.000 0.00 0.00 36.97 1.98
659 670 5.113529 CGTGCGTTTTCACAAAAGTTCTATC 59.886 40.000 0.00 0.00 36.80 2.08
660 671 4.967575 CGTGCGTTTTCACAAAAGTTCTAT 59.032 37.500 0.00 0.00 36.80 1.98
661 672 4.142859 ACGTGCGTTTTCACAAAAGTTCTA 60.143 37.500 0.00 0.00 36.80 2.10
662 673 3.168193 CGTGCGTTTTCACAAAAGTTCT 58.832 40.909 0.00 0.00 36.80 3.01
663 674 2.912345 ACGTGCGTTTTCACAAAAGTTC 59.088 40.909 0.00 0.00 36.80 3.01
664 675 2.912345 GACGTGCGTTTTCACAAAAGTT 59.088 40.909 0.00 0.00 36.80 2.66
665 676 2.095668 TGACGTGCGTTTTCACAAAAGT 60.096 40.909 0.00 0.00 36.80 2.66
666 677 2.510874 TGACGTGCGTTTTCACAAAAG 58.489 42.857 0.00 0.00 36.80 2.27
667 678 2.613730 TGACGTGCGTTTTCACAAAA 57.386 40.000 0.00 0.00 36.80 2.44
668 679 2.159503 ACATGACGTGCGTTTTCACAAA 60.160 40.909 0.00 0.00 36.80 2.83
669 680 1.398739 ACATGACGTGCGTTTTCACAA 59.601 42.857 0.00 0.00 36.80 3.33
670 681 1.010580 ACATGACGTGCGTTTTCACA 58.989 45.000 0.00 0.00 36.80 3.58
671 682 2.934107 TACATGACGTGCGTTTTCAC 57.066 45.000 0.00 0.00 0.00 3.18
708 720 5.106908 GGATTTCAATATCGGCTAGCTTGTC 60.107 44.000 15.72 4.72 0.00 3.18
713 725 2.673368 CGGGATTTCAATATCGGCTAGC 59.327 50.000 6.04 6.04 0.00 3.42
722 734 2.607631 GGTCGACCGGGATTTCAATA 57.392 50.000 20.85 0.00 0.00 1.90
738 750 0.040246 GCTAGCTATGTCGACCGGTC 60.040 60.000 25.28 25.28 0.00 4.79
739 751 1.453762 GGCTAGCTATGTCGACCGGT 61.454 60.000 6.92 6.92 0.00 5.28
740 752 1.286260 GGCTAGCTATGTCGACCGG 59.714 63.158 15.72 0.00 0.00 5.28
741 753 1.082038 CGGCTAGCTATGTCGACCG 60.082 63.158 15.72 1.57 34.08 4.79
830 843 0.098025 ATTTTATGCAACCGGTCGCG 59.902 50.000 13.86 0.00 0.00 5.87
1887 1913 0.037975 GTCCGGCGAGAAACTTGGTA 60.038 55.000 9.30 0.00 0.00 3.25
2100 2131 3.028850 CCCATGATTGGCAGTGATTTCT 58.971 45.455 0.00 0.00 42.15 2.52
2249 2290 9.988815 AATGCTTGAAAACGAGATAGTAGATAT 57.011 29.630 0.00 0.00 0.00 1.63
2284 2325 9.494271 GCATATGAATTTCCAGACTATACTTGA 57.506 33.333 6.97 0.00 0.00 3.02
2285 2326 9.276590 TGCATATGAATTTCCAGACTATACTTG 57.723 33.333 6.97 0.00 0.00 3.16
2286 2327 9.851686 TTGCATATGAATTTCCAGACTATACTT 57.148 29.630 6.97 0.00 0.00 2.24
2287 2328 9.499479 CTTGCATATGAATTTCCAGACTATACT 57.501 33.333 6.97 0.00 0.00 2.12
2288 2329 8.725148 CCTTGCATATGAATTTCCAGACTATAC 58.275 37.037 6.97 0.00 0.00 1.47
2289 2330 8.659527 TCCTTGCATATGAATTTCCAGACTATA 58.340 33.333 6.97 0.00 0.00 1.31
2290 2331 7.520798 TCCTTGCATATGAATTTCCAGACTAT 58.479 34.615 6.97 0.00 0.00 2.12
2292 2333 5.759059 TCCTTGCATATGAATTTCCAGACT 58.241 37.500 6.97 0.00 0.00 3.24
2293 2334 6.455360 TTCCTTGCATATGAATTTCCAGAC 57.545 37.500 6.97 0.00 0.00 3.51
2294 2335 8.632679 GTTATTCCTTGCATATGAATTTCCAGA 58.367 33.333 6.97 0.00 31.55 3.86
2295 2336 7.869429 GGTTATTCCTTGCATATGAATTTCCAG 59.131 37.037 6.97 0.00 31.55 3.86
2296 2337 7.344093 TGGTTATTCCTTGCATATGAATTTCCA 59.656 33.333 6.97 13.64 37.07 3.53
2297 2338 7.725251 TGGTTATTCCTTGCATATGAATTTCC 58.275 34.615 6.97 11.98 37.07 3.13
2298 2339 9.598517 TTTGGTTATTCCTTGCATATGAATTTC 57.401 29.630 6.97 0.00 37.07 2.17
2337 2449 3.311871 CAGCACAAATGACTATCTCCAGC 59.688 47.826 0.00 0.00 0.00 4.85
2426 2538 2.621998 TGATAAGTGAGGTACGGCTAGC 59.378 50.000 6.04 6.04 0.00 3.42
2611 2723 3.448686 CGGTATACCTCTCTTGCTTGTG 58.551 50.000 19.68 0.00 0.00 3.33
2618 2730 2.108601 CTCCTCCCGGTATACCTCTCTT 59.891 54.545 19.68 0.00 0.00 2.85
2743 2859 3.131933 ACAAGTGAGAGGAGGATGAATCG 59.868 47.826 0.00 0.00 0.00 3.34
2744 2860 4.442753 GGACAAGTGAGAGGAGGATGAATC 60.443 50.000 0.00 0.00 0.00 2.52
2745 2861 3.454082 GGACAAGTGAGAGGAGGATGAAT 59.546 47.826 0.00 0.00 0.00 2.57
2746 2862 2.834549 GGACAAGTGAGAGGAGGATGAA 59.165 50.000 0.00 0.00 0.00 2.57
2747 2863 2.043664 AGGACAAGTGAGAGGAGGATGA 59.956 50.000 0.00 0.00 0.00 2.92
2748 2864 2.465813 AGGACAAGTGAGAGGAGGATG 58.534 52.381 0.00 0.00 0.00 3.51
2750 2866 2.110899 AGAAGGACAAGTGAGAGGAGGA 59.889 50.000 0.00 0.00 0.00 3.71
2751 2867 2.534990 AGAAGGACAAGTGAGAGGAGG 58.465 52.381 0.00 0.00 0.00 4.30
2752 2868 5.930837 AATAGAAGGACAAGTGAGAGGAG 57.069 43.478 0.00 0.00 0.00 3.69
2753 2869 7.070074 GGAATAATAGAAGGACAAGTGAGAGGA 59.930 40.741 0.00 0.00 0.00 3.71
2754 2870 7.070571 AGGAATAATAGAAGGACAAGTGAGAGG 59.929 40.741 0.00 0.00 0.00 3.69
2755 2871 8.017418 AGGAATAATAGAAGGACAAGTGAGAG 57.983 38.462 0.00 0.00 0.00 3.20
2756 2872 7.979786 AGGAATAATAGAAGGACAAGTGAGA 57.020 36.000 0.00 0.00 0.00 3.27
2758 2874 9.886132 GTTAAGGAATAATAGAAGGACAAGTGA 57.114 33.333 0.00 0.00 0.00 3.41
2759 2875 9.667107 TGTTAAGGAATAATAGAAGGACAAGTG 57.333 33.333 0.00 0.00 0.00 3.16
2763 2879 9.886132 GACTTGTTAAGGAATAATAGAAGGACA 57.114 33.333 0.00 0.00 0.00 4.02
2764 2880 9.032420 CGACTTGTTAAGGAATAATAGAAGGAC 57.968 37.037 0.00 0.00 0.00 3.85
2765 2881 8.974238 TCGACTTGTTAAGGAATAATAGAAGGA 58.026 33.333 0.00 0.00 0.00 3.36
2766 2882 9.595823 TTCGACTTGTTAAGGAATAATAGAAGG 57.404 33.333 0.00 0.00 0.00 3.46
2769 2885 9.079833 CGTTTCGACTTGTTAAGGAATAATAGA 57.920 33.333 0.00 0.00 0.00 1.98
2770 2886 9.079833 TCGTTTCGACTTGTTAAGGAATAATAG 57.920 33.333 0.00 0.00 0.00 1.73
2771 2887 8.984891 TCGTTTCGACTTGTTAAGGAATAATA 57.015 30.769 0.00 0.00 0.00 0.98
2772 2888 7.816031 TCTCGTTTCGACTTGTTAAGGAATAAT 59.184 33.333 0.00 0.00 0.00 1.28
2773 2889 7.115378 GTCTCGTTTCGACTTGTTAAGGAATAA 59.885 37.037 0.00 0.00 0.00 1.40
2774 2890 6.583806 GTCTCGTTTCGACTTGTTAAGGAATA 59.416 38.462 0.00 0.00 0.00 1.75
2775 2891 5.404667 GTCTCGTTTCGACTTGTTAAGGAAT 59.595 40.000 0.00 0.00 0.00 3.01
2776 2892 4.741676 GTCTCGTTTCGACTTGTTAAGGAA 59.258 41.667 0.00 0.00 0.00 3.36
2777 2893 4.202040 TGTCTCGTTTCGACTTGTTAAGGA 60.202 41.667 0.00 0.00 32.70 3.36
2778 2894 4.046462 TGTCTCGTTTCGACTTGTTAAGG 58.954 43.478 0.00 0.00 32.70 2.69
2779 2895 4.148348 CCTGTCTCGTTTCGACTTGTTAAG 59.852 45.833 0.00 0.00 32.70 1.85
2780 2896 4.046462 CCTGTCTCGTTTCGACTTGTTAA 58.954 43.478 0.00 0.00 32.70 2.01
2781 2897 3.316029 TCCTGTCTCGTTTCGACTTGTTA 59.684 43.478 0.00 0.00 32.70 2.41
2882 3166 5.416271 TGATGACCCAACTAAAGTAGGAC 57.584 43.478 6.20 1.72 0.00 3.85
2910 3194 5.012148 AGTGCAGAGTGTGACCTAGTAAATT 59.988 40.000 0.00 0.00 0.00 1.82
2925 3209 3.196469 TGCTAGCAAATAGAGTGCAGAGT 59.804 43.478 16.84 0.00 44.74 3.24
2996 3280 2.597305 CGCGAAAACAACGTAGCTAGAT 59.403 45.455 0.00 0.00 0.00 1.98
3176 3460 4.010349 GGCAGGTAAATCACAAACTAGCT 58.990 43.478 0.00 0.00 0.00 3.32
3218 3502 6.870439 GGGCAGGATTTGATAAGCATTTATTC 59.130 38.462 0.00 0.00 29.67 1.75
3227 3511 2.917933 TCACGGGCAGGATTTGATAAG 58.082 47.619 0.00 0.00 0.00 1.73
3285 3569 6.246163 ACCTTCTAAACCAATCCCACTTTAG 58.754 40.000 0.00 0.00 0.00 1.85
3338 3622 0.977395 CCTTCGTCCAACCTTCTCCT 59.023 55.000 0.00 0.00 0.00 3.69
3364 3648 2.940410 GTTCCGTGTTTCACTTCTTCCA 59.060 45.455 0.00 0.00 31.34 3.53
3421 3776 7.093727 CCAGTAGTTCAGATTTCTCTAGTTGGA 60.094 40.741 0.00 0.00 0.00 3.53
3422 3777 7.038659 CCAGTAGTTCAGATTTCTCTAGTTGG 58.961 42.308 0.00 0.00 0.00 3.77
3567 3922 6.360618 AGAGGCTGTTTCCATATTAAGAAGG 58.639 40.000 0.00 0.00 0.00 3.46
3568 3923 7.872113 AAGAGGCTGTTTCCATATTAAGAAG 57.128 36.000 0.00 0.00 0.00 2.85
3569 3924 8.325787 TGTAAGAGGCTGTTTCCATATTAAGAA 58.674 33.333 0.90 0.00 0.00 2.52
3570 3925 7.857456 TGTAAGAGGCTGTTTCCATATTAAGA 58.143 34.615 0.90 0.00 0.00 2.10
3571 3926 7.987458 TCTGTAAGAGGCTGTTTCCATATTAAG 59.013 37.037 0.90 0.00 38.67 1.85
3572 3927 7.857456 TCTGTAAGAGGCTGTTTCCATATTAA 58.143 34.615 0.90 0.00 38.67 1.40
3573 3928 7.432148 TCTGTAAGAGGCTGTTTCCATATTA 57.568 36.000 0.90 0.00 38.67 0.98
3574 3929 6.313519 TCTGTAAGAGGCTGTTTCCATATT 57.686 37.500 0.90 0.00 38.67 1.28
3575 3930 5.957771 TCTGTAAGAGGCTGTTTCCATAT 57.042 39.130 0.90 0.00 38.67 1.78
3589 3944 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3590 3945 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3591 3946 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3592 3947 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3593 3948 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3594 3949 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3595 3950 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3596 3951 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3597 3952 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3598 3953 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3599 3954 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3600 3955 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3601 3956 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
3602 3957 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
3603 3958 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
3604 3959 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
3605 3960 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
3606 3961 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
3607 3962 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
3608 3963 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
3609 3964 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
3610 3965 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
3611 3966 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
3612 3967 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
3613 3968 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
3614 3969 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
3615 3970 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
3625 3980 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3626 3981 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3627 3982 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3628 3983 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3629 3984 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3630 3985 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3631 3986 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3632 3987 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3633 3988 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
3634 3989 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3635 3990 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3636 3991 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3637 3992 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3638 3993 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3639 3994 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3640 3995 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3641 3996 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
3642 3997 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
3643 3998 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
3655 4010 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3658 4013 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3659 4014 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3660 4015 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3661 4016 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3663 4018 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
3664 4019 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
3665 4020 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
3666 4021 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
3667 4022 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
3668 4023 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
3669 4024 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
3670 4025 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
3671 4026 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
3684 4039 2.366972 TAGAAGGGAGGGGGCAGC 60.367 66.667 0.00 0.00 0.00 5.25
3685 4040 2.447714 GCTAGAAGGGAGGGGGCAG 61.448 68.421 0.00 0.00 0.00 4.85
3686 4041 2.366972 GCTAGAAGGGAGGGGGCA 60.367 66.667 0.00 0.00 0.00 5.36
3687 4042 2.040359 AGCTAGAAGGGAGGGGGC 60.040 66.667 0.00 0.00 0.00 5.80
3688 4043 2.447714 GCAGCTAGAAGGGAGGGGG 61.448 68.421 0.00 0.00 0.00 5.40
3689 4044 1.059006 ATGCAGCTAGAAGGGAGGGG 61.059 60.000 0.00 0.00 0.00 4.79
3690 4045 0.396060 GATGCAGCTAGAAGGGAGGG 59.604 60.000 0.00 0.00 0.00 4.30
3691 4046 0.396060 GGATGCAGCTAGAAGGGAGG 59.604 60.000 0.22 0.00 0.00 4.30
3692 4047 1.126488 TGGATGCAGCTAGAAGGGAG 58.874 55.000 0.22 0.00 0.00 4.30
3693 4048 1.811778 ATGGATGCAGCTAGAAGGGA 58.188 50.000 0.22 0.00 0.00 4.20
3694 4049 2.636893 ACTATGGATGCAGCTAGAAGGG 59.363 50.000 0.22 0.00 0.00 3.95
3716 4071 9.836864 AGACAGCATAACTATTTTCATGTGATA 57.163 29.630 0.00 0.00 0.00 2.15
3742 4097 6.806217 TCCTATTATTCCCCAAAGAAACCAA 58.194 36.000 0.00 0.00 0.00 3.67
3881 4236 3.258123 GCTAGTTTTCCATTCCTTGGCAA 59.742 43.478 0.00 0.00 46.01 4.52
3894 4249 5.193679 ACTAATCATGTGGGGCTAGTTTTC 58.806 41.667 0.00 0.00 0.00 2.29
4035 4390 0.473755 TCACCTGTGGTCATGCTGTT 59.526 50.000 0.00 0.00 31.02 3.16
4080 4435 6.403964 GCTCACATGTGCAAAGAAATATGAGA 60.404 38.462 21.38 0.00 33.29 3.27
4320 4675 4.023291 AGCAAAAGTTTTGTTCCCTCTCA 58.977 39.130 25.20 0.00 0.00 3.27
4337 4692 1.519408 GCTTCGGTTAGTGGAGCAAA 58.481 50.000 0.00 0.00 0.00 3.68
4387 4742 3.214845 GCTACATGGGCTGCTGGC 61.215 66.667 8.77 8.77 40.90 4.85
4388 4743 1.699054 TAGGCTACATGGGCTGCTGG 61.699 60.000 8.08 0.00 42.15 4.85
4389 4744 0.399454 ATAGGCTACATGGGCTGCTG 59.601 55.000 8.08 0.00 42.15 4.41
4390 4745 0.399454 CATAGGCTACATGGGCTGCT 59.601 55.000 8.08 3.49 42.15 4.24
4391 4746 1.239968 GCATAGGCTACATGGGCTGC 61.240 60.000 8.08 8.50 42.15 5.25
4392 4747 0.952497 CGCATAGGCTACATGGGCTG 60.952 60.000 8.08 3.20 42.15 4.85
4393 4748 1.372683 CGCATAGGCTACATGGGCT 59.627 57.895 11.62 7.85 44.34 5.19
4394 4749 0.535102 AACGCATAGGCTACATGGGC 60.535 55.000 12.68 0.50 39.30 5.36
4395 4750 1.967319 AAACGCATAGGCTACATGGG 58.033 50.000 11.52 11.52 40.94 4.00
4396 4751 3.728845 AGTAAACGCATAGGCTACATGG 58.271 45.455 0.00 0.00 38.10 3.66
4397 4752 4.808895 TCAAGTAAACGCATAGGCTACATG 59.191 41.667 0.00 0.00 38.10 3.21
4398 4753 5.018539 TCAAGTAAACGCATAGGCTACAT 57.981 39.130 0.00 0.00 38.10 2.29
4399 4754 4.459390 TCAAGTAAACGCATAGGCTACA 57.541 40.909 0.00 0.00 38.10 2.74
4400 4755 5.350640 ACTTTCAAGTAAACGCATAGGCTAC 59.649 40.000 0.00 0.00 37.52 3.58
4401 4756 5.484715 ACTTTCAAGTAAACGCATAGGCTA 58.515 37.500 0.00 0.00 37.52 3.93
4402 4757 4.324267 ACTTTCAAGTAAACGCATAGGCT 58.676 39.130 0.00 0.00 37.52 4.58
4403 4758 4.680171 ACTTTCAAGTAAACGCATAGGC 57.320 40.909 0.00 0.00 37.52 3.93
4479 4844 9.801873 CAAAACAATGAAAAGAGAGAAACCTAA 57.198 29.630 0.00 0.00 0.00 2.69
4486 4851 5.593909 TCAGGCAAAACAATGAAAAGAGAGA 59.406 36.000 0.00 0.00 0.00 3.10
4487 4852 5.835257 TCAGGCAAAACAATGAAAAGAGAG 58.165 37.500 0.00 0.00 0.00 3.20
4499 4864 4.537260 CCCCCATCAGGCAAAACA 57.463 55.556 0.00 0.00 0.00 2.83
4526 4891 5.036117 TGGCTGGTCATCTAATAAGAACC 57.964 43.478 0.00 0.00 34.43 3.62
4729 5138 7.850982 GTCGATACTTTTGCAACCACATATAAG 59.149 37.037 0.00 0.00 0.00 1.73
4930 5344 7.595130 GTCCAAAATAGATGTTGTGTTTTCTCC 59.405 37.037 0.00 0.00 0.00 3.71
4963 5381 0.734889 CCATGTAAAGGAAGCCAGCG 59.265 55.000 0.00 0.00 0.00 5.18
5338 5966 6.032094 GCTGTGGTAATTTCAATGATGACAG 58.968 40.000 0.00 0.00 34.61 3.51
5340 5968 5.105797 TGGCTGTGGTAATTTCAATGATGAC 60.106 40.000 0.00 0.00 34.61 3.06
5341 5969 5.015515 TGGCTGTGGTAATTTCAATGATGA 58.984 37.500 0.00 0.00 0.00 2.92
5342 5970 5.104374 GTGGCTGTGGTAATTTCAATGATG 58.896 41.667 0.00 0.00 0.00 3.07
5343 5971 4.771577 TGTGGCTGTGGTAATTTCAATGAT 59.228 37.500 0.00 0.00 0.00 2.45
5344 5972 4.022416 GTGTGGCTGTGGTAATTTCAATGA 60.022 41.667 0.00 0.00 0.00 2.57
5345 5973 4.022068 AGTGTGGCTGTGGTAATTTCAATG 60.022 41.667 0.00 0.00 0.00 2.82
5346 5974 4.022068 CAGTGTGGCTGTGGTAATTTCAAT 60.022 41.667 0.00 0.00 40.27 2.57
5347 5975 3.317711 CAGTGTGGCTGTGGTAATTTCAA 59.682 43.478 0.00 0.00 40.27 2.69
5348 5976 2.884012 CAGTGTGGCTGTGGTAATTTCA 59.116 45.455 0.00 0.00 40.27 2.69
5349 5977 3.559238 CAGTGTGGCTGTGGTAATTTC 57.441 47.619 0.00 0.00 40.27 2.17
5360 5988 2.865119 TCAATGATGACAGTGTGGCT 57.135 45.000 0.00 0.00 41.87 4.75
5361 5989 4.445452 AAATCAATGATGACAGTGTGGC 57.555 40.909 0.00 0.00 41.87 5.01
5362 5990 6.748333 ACTAAATCAATGATGACAGTGTGG 57.252 37.500 0.00 0.00 41.87 4.17
5363 5991 7.809665 TCAACTAAATCAATGATGACAGTGTG 58.190 34.615 0.00 3.32 41.87 3.82
5364 5992 7.984422 TCAACTAAATCAATGATGACAGTGT 57.016 32.000 0.00 0.00 41.87 3.55
5365 5993 9.850628 AAATCAACTAAATCAATGATGACAGTG 57.149 29.630 0.00 0.00 42.44 3.66
5373 6001 7.814107 GCCTGACAAAATCAACTAAATCAATGA 59.186 33.333 0.00 0.00 36.69 2.57
5437 6065 4.887071 GGACAATGGCATCAAACCTATACA 59.113 41.667 0.00 0.00 0.00 2.29
5719 6373 2.434359 CCCTCCTGGCGAACGTTC 60.434 66.667 18.47 18.47 0.00 3.95
5739 6393 2.194800 TCAAAACGTTCGCAAATGCA 57.805 40.000 0.00 0.00 42.21 3.96
5782 6436 3.673746 TGTCACTTTGAAGAAACTGCG 57.326 42.857 0.00 0.00 0.00 5.18
5998 6658 1.024271 CAGGTTGGGATATTGTGGCG 58.976 55.000 0.00 0.00 0.00 5.69
6041 6701 6.345298 TGTCACAGTTCTGTGTTCATAAAGA 58.655 36.000 25.52 6.96 40.45 2.52
6089 6749 3.054508 TGATGGCTACATGGTGATGTGAA 60.055 43.478 0.00 0.00 43.03 3.18
6135 6798 1.074423 CCGACGAGAGGCCCCTATA 59.926 63.158 0.00 0.00 33.32 1.31
6207 6899 6.161855 TGACTGAAGCTTTCAAGTAGAGAA 57.838 37.500 0.00 0.00 39.58 2.87
6208 6900 5.791336 TGACTGAAGCTTTCAAGTAGAGA 57.209 39.130 0.00 0.00 39.58 3.10
6209 6901 7.224362 CCATATGACTGAAGCTTTCAAGTAGAG 59.776 40.741 3.65 0.00 39.58 2.43
6210 6902 7.044181 CCATATGACTGAAGCTTTCAAGTAGA 58.956 38.462 3.65 0.00 39.58 2.59
6211 6903 6.238320 GCCATATGACTGAAGCTTTCAAGTAG 60.238 42.308 3.65 0.00 39.58 2.57
6212 6904 5.586243 GCCATATGACTGAAGCTTTCAAGTA 59.414 40.000 3.65 0.00 39.58 2.24
6213 6905 4.397417 GCCATATGACTGAAGCTTTCAAGT 59.603 41.667 3.65 5.21 39.58 3.16
6214 6906 4.639310 AGCCATATGACTGAAGCTTTCAAG 59.361 41.667 3.65 1.63 39.58 3.02
6215 6907 4.397103 CAGCCATATGACTGAAGCTTTCAA 59.603 41.667 13.33 0.00 39.58 2.69
6216 6908 3.943381 CAGCCATATGACTGAAGCTTTCA 59.057 43.478 13.33 0.19 35.90 2.69
6217 6909 3.243002 GCAGCCATATGACTGAAGCTTTC 60.243 47.826 21.73 0.00 35.90 2.62
6218 6910 2.686915 GCAGCCATATGACTGAAGCTTT 59.313 45.455 21.73 0.00 35.90 3.51
6219 6911 2.295885 GCAGCCATATGACTGAAGCTT 58.704 47.619 21.73 0.00 35.90 3.74
6220 6912 1.211212 TGCAGCCATATGACTGAAGCT 59.789 47.619 21.73 9.39 35.90 3.74
6221 6913 1.602851 CTGCAGCCATATGACTGAAGC 59.397 52.381 21.73 7.91 32.86 3.86
6222 6914 2.219458 CCTGCAGCCATATGACTGAAG 58.781 52.381 21.73 19.75 39.03 3.02
6223 6915 1.748244 GCCTGCAGCCATATGACTGAA 60.748 52.381 21.73 11.26 35.90 3.02
6224 6916 0.179037 GCCTGCAGCCATATGACTGA 60.179 55.000 21.73 7.02 35.90 3.41
6225 6917 2.328235 GCCTGCAGCCATATGACTG 58.672 57.895 14.17 14.17 36.96 3.51
6226 6918 4.894201 GCCTGCAGCCATATGACT 57.106 55.556 8.66 0.00 34.35 3.41
6239 6931 1.661341 GAACAGATACTGCAGGCCTG 58.339 55.000 29.34 29.34 34.37 4.85
6240 6932 0.176680 CGAACAGATACTGCAGGCCT 59.823 55.000 19.93 0.00 34.37 5.19
6241 6933 0.108138 ACGAACAGATACTGCAGGCC 60.108 55.000 19.93 6.41 34.37 5.19
6242 6934 1.002366 CACGAACAGATACTGCAGGC 58.998 55.000 19.93 7.03 34.37 4.85
6243 6935 2.654749 TCACGAACAGATACTGCAGG 57.345 50.000 19.93 1.54 34.37 4.85
6260 6952 6.403866 ACTAATTCCACAAAACAAGCATCA 57.596 33.333 0.00 0.00 0.00 3.07
6316 7008 4.037803 GCACCACCAATGCATATAACATCA 59.962 41.667 0.00 0.00 42.88 3.07
6343 7035 0.729116 CGTCCAAAGCAGCCATACAG 59.271 55.000 0.00 0.00 0.00 2.74
6432 7124 8.458843 CCAATGAAATTTTCGTAGAACTACCAT 58.541 33.333 4.34 0.16 36.20 3.55
6445 7137 7.079475 CAGATTTTGGCACCAATGAAATTTTC 58.921 34.615 2.31 2.05 31.22 2.29
6501 7193 2.303890 TCTGCTGATTTTGAGGAGCTGA 59.696 45.455 0.00 0.00 37.15 4.26
6599 7291 8.984891 ATTCAGATATTTTGAATGCGAAAACA 57.015 26.923 12.84 0.00 42.15 2.83
6630 7322 7.148407 ACAGTAATCAGGATTCACAAATTCGTC 60.148 37.037 0.00 0.00 32.50 4.20
6691 7390 6.882140 TCTCAAAGAACGAAATTGGCCTAATA 59.118 34.615 3.32 0.00 0.00 0.98
6692 7391 5.710099 TCTCAAAGAACGAAATTGGCCTAAT 59.290 36.000 3.32 0.00 0.00 1.73
6693 7392 5.067273 TCTCAAAGAACGAAATTGGCCTAA 58.933 37.500 3.32 0.00 0.00 2.69
6694 7393 4.647611 TCTCAAAGAACGAAATTGGCCTA 58.352 39.130 3.32 0.00 0.00 3.93
6704 7403 6.531503 AAGGAGTATGATCTCAAAGAACGA 57.468 37.500 0.00 0.00 36.30 3.85
6842 7549 7.727181 AGCACTTAGGTCATCGATTTAACTAT 58.273 34.615 0.00 0.00 0.00 2.12
6863 7592 6.371548 TGGAAATATAAGTCAGACACAAGCAC 59.628 38.462 2.66 0.00 0.00 4.40
6889 8025 0.814010 GGCATTTCATCTACGCCGGT 60.814 55.000 1.90 0.00 32.14 5.28
6891 8031 1.507141 GGGGCATTTCATCTACGCCG 61.507 60.000 0.00 0.00 43.93 6.46
6894 8034 2.051334 TTGGGGGCATTTCATCTACG 57.949 50.000 0.00 0.00 0.00 3.51
6923 8068 5.420104 ACAAGAGATTTTGGTTCCCATGATC 59.580 40.000 0.00 0.00 31.53 2.92
6972 8335 3.244805 GGGCATCCATGAAGATCATCTGA 60.245 47.826 0.00 0.00 34.28 3.27
6975 8338 3.082548 CAGGGCATCCATGAAGATCATC 58.917 50.000 0.00 0.00 34.28 2.92
6986 8349 1.605992 CTGAAGAGCAGGGCATCCA 59.394 57.895 0.00 0.00 41.07 3.41
7124 8488 4.044390 ATGGCTCCCTCCCACCCT 62.044 66.667 0.00 0.00 34.68 4.34
7195 8583 6.017211 TGATGATCCCAACCATAACTCAAT 57.983 37.500 0.00 0.00 0.00 2.57
7303 8692 7.255730 GCAGGAGAAGCCACATGATTTATATTT 60.256 37.037 0.00 0.00 40.02 1.40
7320 8709 2.795231 TTGATTGAGGGCAGGAGAAG 57.205 50.000 0.00 0.00 0.00 2.85
7321 8710 4.860802 TTATTGATTGAGGGCAGGAGAA 57.139 40.909 0.00 0.00 0.00 2.87
7367 8756 4.404394 TCATGGTAGAAGGAAGCGTATCAA 59.596 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.