Multiple sequence alignment - TraesCS7B01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G194100 chr7B 100.000 3870 0 0 1 3870 333750295 333754164 0.000000e+00 7147
1 TraesCS7B01G194100 chr7B 94.444 72 4 0 261 332 304987244 304987315 1.140000e-20 111
2 TraesCS7B01G194100 chr7D 94.539 3058 142 14 818 3870 189170245 189173282 0.000000e+00 4698
3 TraesCS7B01G194100 chr7D 83.765 425 50 10 327 748 189169802 189170210 6.070000e-103 385
4 TraesCS7B01G194100 chr7D 94.444 72 4 0 261 332 309501930 309501859 1.140000e-20 111
5 TraesCS7B01G194100 chr7A 95.934 2238 75 7 818 3052 194809003 194806779 0.000000e+00 3615
6 TraesCS7B01G194100 chr7A 90.279 823 64 7 3050 3870 194804036 194803228 0.000000e+00 1062
7 TraesCS7B01G194100 chr7A 87.179 429 49 5 327 751 194809468 194809042 2.090000e-132 483
8 TraesCS7B01G194100 chr7A 88.800 125 13 1 327 451 17392828 17392951 6.700000e-33 152
9 TraesCS7B01G194100 chr5B 90.400 125 11 1 327 451 659630056 659630179 3.090000e-36 163
10 TraesCS7B01G194100 chr5B 88.618 123 13 1 327 449 639760843 639760964 8.660000e-32 148
11 TraesCS7B01G194100 chr2B 89.431 123 12 1 327 449 29248555 29248676 1.860000e-33 154
12 TraesCS7B01G194100 chr2B 88.800 125 13 1 327 451 245688127 245688004 6.700000e-33 152
13 TraesCS7B01G194100 chrUn 88.800 125 13 1 327 451 320252 320129 6.700000e-33 152
14 TraesCS7B01G194100 chr2D 89.256 121 13 0 331 451 116812907 116813027 6.700000e-33 152
15 TraesCS7B01G194100 chr6A 88.710 124 13 1 327 450 609691672 609691794 2.410000e-32 150
16 TraesCS7B01G194100 chr4A 97.059 68 2 0 261 328 512543432 512543499 8.790000e-22 115
17 TraesCS7B01G194100 chr4A 94.444 72 4 0 261 332 17796585 17796514 1.140000e-20 111
18 TraesCS7B01G194100 chr3A 95.833 72 2 1 261 332 522273386 522273316 8.790000e-22 115
19 TraesCS7B01G194100 chr3A 90.361 83 5 3 260 340 7304829 7304748 5.290000e-19 106
20 TraesCS7B01G194100 chr1A 97.059 68 2 0 261 328 412467013 412467080 8.790000e-22 115
21 TraesCS7B01G194100 chr5A 93.333 75 5 0 260 334 653942601 653942527 1.140000e-20 111
22 TraesCS7B01G194100 chr1B 94.444 72 4 0 261 332 67055004 67054933 1.140000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G194100 chr7B 333750295 333754164 3869 False 7147.0 7147 100.000000 1 3870 1 chr7B.!!$F2 3869
1 TraesCS7B01G194100 chr7D 189169802 189173282 3480 False 2541.5 4698 89.152000 327 3870 2 chr7D.!!$F1 3543
2 TraesCS7B01G194100 chr7A 194803228 194809468 6240 True 1720.0 3615 91.130667 327 3870 3 chr7A.!!$R1 3543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.035630 AGTGGCTTGATCTGACAGCC 60.036 55.0 14.57 14.57 45.19 4.85 F
175 176 0.035630 GTGGCTTGATCTGACAGCCT 60.036 55.0 19.61 0.00 45.20 4.58 F
1171 1182 0.035630 CTTCTGCCCTTCCACTCCAG 60.036 60.0 0.00 0.00 0.00 3.86 F
1557 1574 0.108281 GGGCAGGTCGTCTTCTAACC 60.108 60.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1555 0.108281 GGTTAGAAGACGACCTGCCC 60.108 60.0 0.0 0.0 0.00 5.36 R
1662 1679 0.379316 ACCCGCAACGACTTTGTTTC 59.621 50.0 0.0 0.0 37.54 2.78 R
2384 2401 0.034059 CTTGAAGCTCCGACCTGTGT 59.966 55.0 0.0 0.0 0.00 3.72 R
3339 6104 1.086696 CCCACTTATGCACTTGTCCG 58.913 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.753867 GGCTAGGGTTCTACAGGAGC 59.246 60.000 0.00 0.00 0.00 4.70
20 21 1.689892 GGCTAGGGTTCTACAGGAGCT 60.690 57.143 0.00 0.00 0.00 4.09
21 22 1.410882 GCTAGGGTTCTACAGGAGCTG 59.589 57.143 0.00 0.00 37.52 4.24
22 23 1.410882 CTAGGGTTCTACAGGAGCTGC 59.589 57.143 0.00 0.00 34.37 5.25
23 24 0.252467 AGGGTTCTACAGGAGCTGCT 60.252 55.000 0.00 0.00 34.37 4.24
24 25 0.107945 GGGTTCTACAGGAGCTGCTG 60.108 60.000 31.17 31.17 34.37 4.41
25 26 0.107945 GGTTCTACAGGAGCTGCTGG 60.108 60.000 34.65 20.38 34.37 4.85
26 27 0.898320 GTTCTACAGGAGCTGCTGGA 59.102 55.000 34.65 28.15 34.37 3.86
27 28 1.484240 GTTCTACAGGAGCTGCTGGAT 59.516 52.381 34.65 19.94 34.37 3.41
28 29 1.871418 TCTACAGGAGCTGCTGGATT 58.129 50.000 34.65 19.24 34.37 3.01
29 30 2.191400 TCTACAGGAGCTGCTGGATTT 58.809 47.619 34.65 18.90 34.37 2.17
30 31 2.573462 TCTACAGGAGCTGCTGGATTTT 59.427 45.455 34.65 18.55 34.37 1.82
31 32 3.774766 TCTACAGGAGCTGCTGGATTTTA 59.225 43.478 34.65 18.67 34.37 1.52
32 33 3.659183 ACAGGAGCTGCTGGATTTTAT 57.341 42.857 34.65 12.86 34.37 1.40
33 34 4.778213 ACAGGAGCTGCTGGATTTTATA 57.222 40.909 34.65 0.00 34.37 0.98
34 35 5.316158 ACAGGAGCTGCTGGATTTTATAT 57.684 39.130 34.65 11.41 34.37 0.86
35 36 6.439636 ACAGGAGCTGCTGGATTTTATATA 57.560 37.500 34.65 0.00 34.37 0.86
36 37 6.234177 ACAGGAGCTGCTGGATTTTATATAC 58.766 40.000 34.65 0.00 34.37 1.47
37 38 5.645497 CAGGAGCTGCTGGATTTTATATACC 59.355 44.000 26.30 0.00 0.00 2.73
38 39 4.944317 GGAGCTGCTGGATTTTATATACCC 59.056 45.833 7.01 0.00 0.00 3.69
39 40 5.514834 GGAGCTGCTGGATTTTATATACCCA 60.515 44.000 7.01 0.00 0.00 4.51
40 41 6.144845 AGCTGCTGGATTTTATATACCCAT 57.855 37.500 0.00 0.00 0.00 4.00
41 42 7.270832 AGCTGCTGGATTTTATATACCCATA 57.729 36.000 0.00 0.00 0.00 2.74
42 43 7.341805 AGCTGCTGGATTTTATATACCCATAG 58.658 38.462 0.00 0.00 0.00 2.23
43 44 6.543831 GCTGCTGGATTTTATATACCCATAGG 59.456 42.308 0.00 0.00 40.04 2.57
56 57 3.543680 CCCATAGGTGAAATGACGACT 57.456 47.619 0.00 0.00 0.00 4.18
57 58 4.665833 CCCATAGGTGAAATGACGACTA 57.334 45.455 0.00 0.00 0.00 2.59
58 59 5.215252 CCCATAGGTGAAATGACGACTAT 57.785 43.478 0.00 0.00 0.00 2.12
59 60 6.340962 CCCATAGGTGAAATGACGACTATA 57.659 41.667 0.00 0.00 0.00 1.31
60 61 6.157211 CCCATAGGTGAAATGACGACTATAC 58.843 44.000 0.00 0.00 0.00 1.47
61 62 6.157211 CCATAGGTGAAATGACGACTATACC 58.843 44.000 0.00 0.00 0.00 2.73
62 63 4.667519 AGGTGAAATGACGACTATACCC 57.332 45.455 0.00 0.00 0.00 3.69
63 64 4.287552 AGGTGAAATGACGACTATACCCT 58.712 43.478 0.00 0.00 0.00 4.34
64 65 4.715297 AGGTGAAATGACGACTATACCCTT 59.285 41.667 0.00 0.00 0.00 3.95
65 66 4.809426 GGTGAAATGACGACTATACCCTTG 59.191 45.833 0.00 0.00 0.00 3.61
66 67 4.809426 GTGAAATGACGACTATACCCTTGG 59.191 45.833 0.00 0.00 0.00 3.61
67 68 4.468510 TGAAATGACGACTATACCCTTGGT 59.531 41.667 0.00 0.00 40.16 3.67
68 69 4.402056 AATGACGACTATACCCTTGGTG 57.598 45.455 0.00 0.00 36.19 4.17
69 70 1.479323 TGACGACTATACCCTTGGTGC 59.521 52.381 0.00 0.00 36.19 5.01
70 71 1.479323 GACGACTATACCCTTGGTGCA 59.521 52.381 0.00 0.00 36.19 4.57
71 72 1.206371 ACGACTATACCCTTGGTGCAC 59.794 52.381 8.80 8.80 36.19 4.57
72 73 1.472728 CGACTATACCCTTGGTGCACC 60.473 57.143 29.67 29.67 36.19 5.01
73 74 0.539986 ACTATACCCTTGGTGCACCG 59.460 55.000 30.07 18.32 36.19 4.94
74 75 0.828022 CTATACCCTTGGTGCACCGA 59.172 55.000 30.07 27.39 36.19 4.69
75 76 1.416401 CTATACCCTTGGTGCACCGAT 59.584 52.381 30.07 16.47 36.19 4.18
76 77 0.623723 ATACCCTTGGTGCACCGATT 59.376 50.000 30.07 17.41 36.19 3.34
77 78 0.402504 TACCCTTGGTGCACCGATTT 59.597 50.000 30.07 17.07 36.19 2.17
78 79 0.469144 ACCCTTGGTGCACCGATTTT 60.469 50.000 30.07 12.12 39.43 1.82
79 80 1.202952 ACCCTTGGTGCACCGATTTTA 60.203 47.619 30.07 9.47 39.43 1.52
80 81 1.201414 CCCTTGGTGCACCGATTTTAC 59.799 52.381 30.07 4.93 39.43 2.01
81 82 1.883275 CCTTGGTGCACCGATTTTACA 59.117 47.619 30.07 7.85 39.43 2.41
82 83 2.351350 CCTTGGTGCACCGATTTTACAC 60.351 50.000 30.07 3.39 39.43 2.90
83 84 1.968704 TGGTGCACCGATTTTACACA 58.031 45.000 30.07 6.24 39.43 3.72
84 85 2.509569 TGGTGCACCGATTTTACACAT 58.490 42.857 30.07 0.00 39.43 3.21
85 86 2.227626 TGGTGCACCGATTTTACACATG 59.772 45.455 30.07 0.00 39.43 3.21
86 87 2.415357 GGTGCACCGATTTTACACATGG 60.415 50.000 22.49 0.00 32.89 3.66
87 88 2.227865 GTGCACCGATTTTACACATGGT 59.772 45.455 5.22 0.00 0.00 3.55
89 90 2.415357 GCACCGATTTTACACATGGTGG 60.415 50.000 10.81 0.00 45.37 4.61
90 91 1.816224 ACCGATTTTACACATGGTGGC 59.184 47.619 0.00 0.00 37.94 5.01
91 92 1.815613 CCGATTTTACACATGGTGGCA 59.184 47.619 0.00 0.00 37.94 4.92
92 93 2.426738 CCGATTTTACACATGGTGGCAT 59.573 45.455 0.00 0.00 37.94 4.40
93 94 3.437428 CGATTTTACACATGGTGGCATG 58.563 45.455 0.00 0.00 37.94 4.06
94 95 3.128415 CGATTTTACACATGGTGGCATGA 59.872 43.478 0.00 0.00 37.94 3.07
95 96 4.675510 GATTTTACACATGGTGGCATGAG 58.324 43.478 0.00 0.00 37.94 2.90
96 97 2.877097 TTACACATGGTGGCATGAGT 57.123 45.000 0.00 0.00 39.18 3.41
97 98 2.877097 TACACATGGTGGCATGAGTT 57.123 45.000 0.00 0.00 37.51 3.01
98 99 1.999648 ACACATGGTGGCATGAGTTT 58.000 45.000 0.00 0.00 37.94 2.66
99 100 2.318908 ACACATGGTGGCATGAGTTTT 58.681 42.857 0.00 0.00 37.94 2.43
100 101 2.297033 ACACATGGTGGCATGAGTTTTC 59.703 45.455 0.00 0.00 37.94 2.29
101 102 2.559668 CACATGGTGGCATGAGTTTTCT 59.440 45.455 0.00 0.00 36.48 2.52
102 103 3.758023 CACATGGTGGCATGAGTTTTCTA 59.242 43.478 0.00 0.00 36.48 2.10
103 104 3.758554 ACATGGTGGCATGAGTTTTCTAC 59.241 43.478 0.00 0.00 36.48 2.59
104 105 2.790433 TGGTGGCATGAGTTTTCTACC 58.210 47.619 0.00 0.00 0.00 3.18
105 106 2.107378 TGGTGGCATGAGTTTTCTACCA 59.893 45.455 0.00 0.00 34.82 3.25
106 107 2.488153 GGTGGCATGAGTTTTCTACCAC 59.512 50.000 0.00 0.41 44.21 4.16
107 108 3.412386 GTGGCATGAGTTTTCTACCACT 58.588 45.455 0.00 0.00 42.20 4.00
108 109 4.564821 GGTGGCATGAGTTTTCTACCACTA 60.565 45.833 8.96 0.00 44.33 2.74
109 110 5.186198 GTGGCATGAGTTTTCTACCACTAT 58.814 41.667 0.00 0.00 42.20 2.12
110 111 5.648092 GTGGCATGAGTTTTCTACCACTATT 59.352 40.000 0.00 0.00 42.20 1.73
111 112 5.880332 TGGCATGAGTTTTCTACCACTATTC 59.120 40.000 0.00 0.00 0.00 1.75
112 113 5.880332 GGCATGAGTTTTCTACCACTATTCA 59.120 40.000 0.00 0.00 0.00 2.57
113 114 6.183360 GGCATGAGTTTTCTACCACTATTCAC 60.183 42.308 0.00 0.00 0.00 3.18
114 115 6.595716 GCATGAGTTTTCTACCACTATTCACT 59.404 38.462 0.00 0.00 0.00 3.41
115 116 7.413438 GCATGAGTTTTCTACCACTATTCACTG 60.413 40.741 0.00 0.00 0.00 3.66
116 117 5.932303 TGAGTTTTCTACCACTATTCACTGC 59.068 40.000 0.00 0.00 0.00 4.40
117 118 6.115448 AGTTTTCTACCACTATTCACTGCT 57.885 37.500 0.00 0.00 0.00 4.24
118 119 7.039293 TGAGTTTTCTACCACTATTCACTGCTA 60.039 37.037 0.00 0.00 0.00 3.49
119 120 7.097834 AGTTTTCTACCACTATTCACTGCTAC 58.902 38.462 0.00 0.00 0.00 3.58
120 121 6.599356 TTTCTACCACTATTCACTGCTACA 57.401 37.500 0.00 0.00 0.00 2.74
121 122 6.599356 TTCTACCACTATTCACTGCTACAA 57.401 37.500 0.00 0.00 0.00 2.41
122 123 5.962433 TCTACCACTATTCACTGCTACAAC 58.038 41.667 0.00 0.00 0.00 3.32
123 124 3.585862 ACCACTATTCACTGCTACAACG 58.414 45.455 0.00 0.00 0.00 4.10
124 125 2.348666 CCACTATTCACTGCTACAACGC 59.651 50.000 0.00 0.00 0.00 4.84
125 126 2.348666 CACTATTCACTGCTACAACGCC 59.651 50.000 0.00 0.00 0.00 5.68
126 127 1.588404 CTATTCACTGCTACAACGCCG 59.412 52.381 0.00 0.00 0.00 6.46
127 128 1.019278 ATTCACTGCTACAACGCCGG 61.019 55.000 0.00 0.00 0.00 6.13
128 129 3.118454 CACTGCTACAACGCCGGG 61.118 66.667 2.18 0.00 0.00 5.73
129 130 3.622826 ACTGCTACAACGCCGGGT 61.623 61.111 2.18 0.00 0.00 5.28
130 131 2.813908 CTGCTACAACGCCGGGTC 60.814 66.667 2.18 0.00 0.00 4.46
131 132 3.296709 CTGCTACAACGCCGGGTCT 62.297 63.158 2.18 0.00 0.00 3.85
132 133 2.508663 GCTACAACGCCGGGTCTC 60.509 66.667 2.18 0.00 0.00 3.36
133 134 2.202570 CTACAACGCCGGGTCTCG 60.203 66.667 2.18 0.00 38.88 4.04
134 135 2.672651 TACAACGCCGGGTCTCGA 60.673 61.111 2.18 0.00 42.43 4.04
135 136 2.001361 CTACAACGCCGGGTCTCGAT 62.001 60.000 2.18 0.00 42.43 3.59
136 137 1.996786 TACAACGCCGGGTCTCGATC 61.997 60.000 2.18 0.00 42.43 3.69
137 138 3.834799 AACGCCGGGTCTCGATCC 61.835 66.667 2.18 0.00 42.43 3.36
143 144 2.340443 GGGTCTCGATCCGATGGC 59.660 66.667 0.00 0.00 34.61 4.40
144 145 2.340443 GGTCTCGATCCGATGGCC 59.660 66.667 0.00 0.00 34.61 5.36
145 146 2.340443 GTCTCGATCCGATGGCCC 59.660 66.667 0.00 0.00 34.61 5.80
146 147 2.123468 TCTCGATCCGATGGCCCA 60.123 61.111 0.00 0.00 34.61 5.36
147 148 2.203082 TCTCGATCCGATGGCCCAG 61.203 63.158 0.00 0.00 34.61 4.45
148 149 3.873026 CTCGATCCGATGGCCCAGC 62.873 68.421 0.00 0.00 34.61 4.85
149 150 3.933722 CGATCCGATGGCCCAGCT 61.934 66.667 0.00 0.00 0.00 4.24
150 151 2.031768 GATCCGATGGCCCAGCTC 59.968 66.667 0.00 0.00 0.00 4.09
151 152 3.543536 GATCCGATGGCCCAGCTCC 62.544 68.421 0.00 0.00 0.00 4.70
152 153 4.804420 TCCGATGGCCCAGCTCCT 62.804 66.667 0.00 0.00 0.00 3.69
153 154 4.247380 CCGATGGCCCAGCTCCTC 62.247 72.222 0.00 0.00 0.00 3.71
154 155 4.247380 CGATGGCCCAGCTCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
155 156 3.092511 GATGGCCCAGCTCCTCCA 61.093 66.667 0.00 0.41 0.00 3.86
156 157 3.095163 ATGGCCCAGCTCCTCCAG 61.095 66.667 0.00 0.00 31.36 3.86
157 158 3.958629 ATGGCCCAGCTCCTCCAGT 62.959 63.158 0.00 0.00 31.36 4.00
158 159 4.106925 GGCCCAGCTCCTCCAGTG 62.107 72.222 0.00 0.00 0.00 3.66
159 160 4.106925 GCCCAGCTCCTCCAGTGG 62.107 72.222 1.40 1.40 0.00 4.00
160 161 4.106925 CCCAGCTCCTCCAGTGGC 62.107 72.222 3.51 0.00 0.00 5.01
161 162 3.007920 CCAGCTCCTCCAGTGGCT 61.008 66.667 3.51 0.00 35.23 4.75
162 163 2.600729 CCAGCTCCTCCAGTGGCTT 61.601 63.158 3.51 0.00 32.30 4.35
163 164 1.376942 CAGCTCCTCCAGTGGCTTG 60.377 63.158 3.51 0.00 32.30 4.01
164 165 1.537397 AGCTCCTCCAGTGGCTTGA 60.537 57.895 3.51 0.00 0.00 3.02
165 166 0.913451 AGCTCCTCCAGTGGCTTGAT 60.913 55.000 3.51 0.00 0.00 2.57
166 167 0.463474 GCTCCTCCAGTGGCTTGATC 60.463 60.000 3.51 0.00 0.00 2.92
167 168 1.202330 CTCCTCCAGTGGCTTGATCT 58.798 55.000 3.51 0.00 0.00 2.75
168 169 0.907486 TCCTCCAGTGGCTTGATCTG 59.093 55.000 3.51 0.00 0.00 2.90
169 170 0.907486 CCTCCAGTGGCTTGATCTGA 59.093 55.000 3.51 0.00 0.00 3.27
170 171 1.406614 CCTCCAGTGGCTTGATCTGAC 60.407 57.143 3.51 0.00 0.00 3.51
171 172 1.277273 CTCCAGTGGCTTGATCTGACA 59.723 52.381 3.51 0.00 0.00 3.58
172 173 1.277273 TCCAGTGGCTTGATCTGACAG 59.723 52.381 3.51 0.00 0.00 3.51
173 174 1.085091 CAGTGGCTTGATCTGACAGC 58.915 55.000 0.00 0.00 0.00 4.40
174 175 0.035630 AGTGGCTTGATCTGACAGCC 60.036 55.000 14.57 14.57 45.19 4.85
175 176 0.035630 GTGGCTTGATCTGACAGCCT 60.036 55.000 19.61 0.00 45.20 4.58
176 177 1.208052 GTGGCTTGATCTGACAGCCTA 59.792 52.381 19.61 8.32 45.20 3.93
177 178 1.908619 TGGCTTGATCTGACAGCCTAA 59.091 47.619 19.61 4.01 45.20 2.69
178 179 2.305635 TGGCTTGATCTGACAGCCTAAA 59.694 45.455 19.61 3.45 45.20 1.85
179 180 3.054139 TGGCTTGATCTGACAGCCTAAAT 60.054 43.478 19.61 0.00 45.20 1.40
180 181 3.563390 GGCTTGATCTGACAGCCTAAATC 59.437 47.826 14.29 0.00 41.99 2.17
181 182 3.247173 GCTTGATCTGACAGCCTAAATCG 59.753 47.826 0.00 0.00 0.00 3.34
182 183 2.826428 TGATCTGACAGCCTAAATCGC 58.174 47.619 0.00 0.00 0.00 4.58
183 184 2.168313 TGATCTGACAGCCTAAATCGCA 59.832 45.455 0.00 0.00 0.00 5.10
184 185 2.988010 TCTGACAGCCTAAATCGCAT 57.012 45.000 0.00 0.00 0.00 4.73
185 186 2.826428 TCTGACAGCCTAAATCGCATC 58.174 47.619 0.00 0.00 0.00 3.91
186 187 2.168313 TCTGACAGCCTAAATCGCATCA 59.832 45.455 0.00 0.00 0.00 3.07
187 188 2.938451 CTGACAGCCTAAATCGCATCAA 59.062 45.455 0.00 0.00 0.00 2.57
188 189 3.342719 TGACAGCCTAAATCGCATCAAA 58.657 40.909 0.00 0.00 0.00 2.69
189 190 3.755905 TGACAGCCTAAATCGCATCAAAA 59.244 39.130 0.00 0.00 0.00 2.44
190 191 4.217334 TGACAGCCTAAATCGCATCAAAAA 59.783 37.500 0.00 0.00 0.00 1.94
204 205 4.687464 AAAAACGATCCGACGGCT 57.313 50.000 9.66 0.00 37.61 5.52
205 206 3.818586 AAAAACGATCCGACGGCTA 57.181 47.368 9.66 0.00 37.61 3.93
206 207 1.636988 AAAAACGATCCGACGGCTAG 58.363 50.000 9.66 2.04 37.61 3.42
207 208 0.813184 AAAACGATCCGACGGCTAGA 59.187 50.000 9.66 0.00 37.61 2.43
208 209 0.813184 AAACGATCCGACGGCTAGAA 59.187 50.000 9.66 0.00 37.61 2.10
209 210 0.381089 AACGATCCGACGGCTAGAAG 59.619 55.000 9.66 0.00 37.61 2.85
210 211 0.747283 ACGATCCGACGGCTAGAAGT 60.747 55.000 9.66 0.25 37.61 3.01
211 212 0.041135 CGATCCGACGGCTAGAAGTC 60.041 60.000 9.66 0.57 0.00 3.01
212 213 0.311477 GATCCGACGGCTAGAAGTCC 59.689 60.000 9.66 0.00 34.10 3.85
213 214 1.108132 ATCCGACGGCTAGAAGTCCC 61.108 60.000 9.66 0.00 34.10 4.46
214 215 1.753463 CCGACGGCTAGAAGTCCCT 60.753 63.158 0.00 0.00 34.10 4.20
215 216 1.433879 CGACGGCTAGAAGTCCCTG 59.566 63.158 10.98 0.00 34.10 4.45
216 217 1.030488 CGACGGCTAGAAGTCCCTGA 61.030 60.000 10.98 0.00 34.10 3.86
217 218 0.741915 GACGGCTAGAAGTCCCTGAG 59.258 60.000 0.00 0.00 0.00 3.35
218 219 1.324005 ACGGCTAGAAGTCCCTGAGC 61.324 60.000 0.00 0.00 0.00 4.26
219 220 1.439644 GGCTAGAAGTCCCTGAGCG 59.560 63.158 0.00 0.00 33.85 5.03
220 221 1.324005 GGCTAGAAGTCCCTGAGCGT 61.324 60.000 0.00 0.00 33.85 5.07
221 222 0.533032 GCTAGAAGTCCCTGAGCGTT 59.467 55.000 0.00 0.00 0.00 4.84
222 223 1.737363 GCTAGAAGTCCCTGAGCGTTG 60.737 57.143 0.00 0.00 0.00 4.10
223 224 1.819288 CTAGAAGTCCCTGAGCGTTGA 59.181 52.381 0.00 0.00 0.00 3.18
224 225 0.605589 AGAAGTCCCTGAGCGTTGAG 59.394 55.000 0.00 0.00 0.00 3.02
225 226 0.603569 GAAGTCCCTGAGCGTTGAGA 59.396 55.000 0.00 0.00 0.00 3.27
226 227 0.605589 AAGTCCCTGAGCGTTGAGAG 59.394 55.000 0.00 0.00 0.00 3.20
227 228 0.251386 AGTCCCTGAGCGTTGAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
228 229 0.172352 GTCCCTGAGCGTTGAGAGAG 59.828 60.000 0.00 0.00 0.00 3.20
229 230 1.153667 CCCTGAGCGTTGAGAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
230 231 1.603236 CCCTGAGCGTTGAGAGAGCT 61.603 60.000 0.00 0.00 44.80 4.09
231 232 0.246086 CCTGAGCGTTGAGAGAGCTT 59.754 55.000 0.00 0.00 41.84 3.74
232 233 1.627879 CTGAGCGTTGAGAGAGCTTC 58.372 55.000 0.00 0.00 41.84 3.86
233 234 0.961753 TGAGCGTTGAGAGAGCTTCA 59.038 50.000 0.00 0.00 41.84 3.02
234 235 1.547820 TGAGCGTTGAGAGAGCTTCAT 59.452 47.619 0.00 0.00 41.84 2.57
235 236 2.028658 TGAGCGTTGAGAGAGCTTCATT 60.029 45.455 0.00 0.00 41.84 2.57
236 237 2.999355 GAGCGTTGAGAGAGCTTCATTT 59.001 45.455 0.00 0.00 41.84 2.32
237 238 3.406764 AGCGTTGAGAGAGCTTCATTTT 58.593 40.909 0.00 0.00 38.13 1.82
238 239 3.434984 AGCGTTGAGAGAGCTTCATTTTC 59.565 43.478 0.00 0.00 38.13 2.29
239 240 3.425492 GCGTTGAGAGAGCTTCATTTTCC 60.425 47.826 0.00 0.00 0.00 3.13
240 241 3.126000 CGTTGAGAGAGCTTCATTTTCCC 59.874 47.826 0.00 0.00 0.00 3.97
241 242 3.356529 TGAGAGAGCTTCATTTTCCCC 57.643 47.619 0.00 0.00 0.00 4.81
242 243 2.915604 TGAGAGAGCTTCATTTTCCCCT 59.084 45.455 0.00 0.00 0.00 4.79
243 244 3.054802 TGAGAGAGCTTCATTTTCCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
244 245 2.093235 AGAGAGCTTCATTTTCCCCTCG 60.093 50.000 0.00 0.00 0.00 4.63
245 246 1.065126 AGAGCTTCATTTTCCCCTCGG 60.065 52.381 0.00 0.00 0.00 4.63
246 247 0.698818 AGCTTCATTTTCCCCTCGGT 59.301 50.000 0.00 0.00 0.00 4.69
247 248 1.075536 AGCTTCATTTTCCCCTCGGTT 59.924 47.619 0.00 0.00 0.00 4.44
248 249 1.472878 GCTTCATTTTCCCCTCGGTTC 59.527 52.381 0.00 0.00 0.00 3.62
249 250 2.880167 GCTTCATTTTCCCCTCGGTTCT 60.880 50.000 0.00 0.00 0.00 3.01
250 251 3.421844 CTTCATTTTCCCCTCGGTTCTT 58.578 45.455 0.00 0.00 0.00 2.52
251 252 4.585879 CTTCATTTTCCCCTCGGTTCTTA 58.414 43.478 0.00 0.00 0.00 2.10
252 253 4.855298 TCATTTTCCCCTCGGTTCTTAT 57.145 40.909 0.00 0.00 0.00 1.73
253 254 4.777463 TCATTTTCCCCTCGGTTCTTATC 58.223 43.478 0.00 0.00 0.00 1.75
254 255 4.473559 TCATTTTCCCCTCGGTTCTTATCT 59.526 41.667 0.00 0.00 0.00 1.98
255 256 4.482952 TTTTCCCCTCGGTTCTTATCTC 57.517 45.455 0.00 0.00 0.00 2.75
256 257 3.399952 TTCCCCTCGGTTCTTATCTCT 57.600 47.619 0.00 0.00 0.00 3.10
257 258 2.667470 TCCCCTCGGTTCTTATCTCTG 58.333 52.381 0.00 0.00 0.00 3.35
258 259 1.689273 CCCCTCGGTTCTTATCTCTGG 59.311 57.143 0.00 0.00 0.00 3.86
259 260 2.667470 CCCTCGGTTCTTATCTCTGGA 58.333 52.381 0.00 0.00 0.00 3.86
260 261 3.235200 CCCTCGGTTCTTATCTCTGGAT 58.765 50.000 0.00 0.00 36.07 3.41
261 262 4.408276 CCCTCGGTTCTTATCTCTGGATA 58.592 47.826 0.00 0.00 33.71 2.59
262 263 5.020132 CCCTCGGTTCTTATCTCTGGATAT 58.980 45.833 0.00 0.00 34.78 1.63
263 264 5.105554 CCCTCGGTTCTTATCTCTGGATATG 60.106 48.000 0.00 0.00 34.78 1.78
264 265 5.712446 CCTCGGTTCTTATCTCTGGATATGA 59.288 44.000 0.00 0.00 37.05 2.15
265 266 6.379703 CCTCGGTTCTTATCTCTGGATATGAT 59.620 42.308 0.00 0.00 37.96 2.45
266 267 7.163001 TCGGTTCTTATCTCTGGATATGATG 57.837 40.000 0.00 0.00 37.96 3.07
267 268 6.948309 TCGGTTCTTATCTCTGGATATGATGA 59.052 38.462 0.00 0.00 37.96 2.92
268 269 7.121907 TCGGTTCTTATCTCTGGATATGATGAG 59.878 40.741 0.00 0.00 37.96 2.90
269 270 7.555087 GGTTCTTATCTCTGGATATGATGAGG 58.445 42.308 0.00 0.00 37.96 3.86
270 271 7.180051 GGTTCTTATCTCTGGATATGATGAGGT 59.820 40.741 0.00 0.00 37.96 3.85
271 272 7.715266 TCTTATCTCTGGATATGATGAGGTG 57.285 40.000 0.00 0.00 35.24 4.00
272 273 6.666980 TCTTATCTCTGGATATGATGAGGTGG 59.333 42.308 0.00 0.00 35.24 4.61
273 274 2.902486 TCTCTGGATATGATGAGGTGGC 59.098 50.000 0.00 0.00 0.00 5.01
274 275 2.636403 CTCTGGATATGATGAGGTGGCA 59.364 50.000 0.00 0.00 0.00 4.92
275 276 3.254089 TCTGGATATGATGAGGTGGCAT 58.746 45.455 0.00 0.00 0.00 4.40
276 277 3.008704 TCTGGATATGATGAGGTGGCATG 59.991 47.826 0.00 0.00 0.00 4.06
277 278 2.089980 GGATATGATGAGGTGGCATGC 58.910 52.381 9.90 9.90 0.00 4.06
278 279 2.290768 GGATATGATGAGGTGGCATGCT 60.291 50.000 18.92 0.00 0.00 3.79
279 280 3.418995 GATATGATGAGGTGGCATGCTT 58.581 45.455 18.92 0.65 0.00 3.91
280 281 4.566278 GGATATGATGAGGTGGCATGCTTA 60.566 45.833 18.92 4.21 0.00 3.09
281 282 2.042686 TGATGAGGTGGCATGCTTAC 57.957 50.000 18.92 16.34 0.00 2.34
282 283 1.281577 TGATGAGGTGGCATGCTTACA 59.718 47.619 18.92 11.21 0.00 2.41
283 284 2.092267 TGATGAGGTGGCATGCTTACAT 60.092 45.455 18.92 14.61 36.79 2.29
306 307 9.396022 ACATGTTGAGATAAATAAGTTAGTGGG 57.604 33.333 0.00 0.00 0.00 4.61
307 308 8.840321 CATGTTGAGATAAATAAGTTAGTGGGG 58.160 37.037 0.00 0.00 0.00 4.96
308 309 8.153221 TGTTGAGATAAATAAGTTAGTGGGGA 57.847 34.615 0.00 0.00 0.00 4.81
309 310 8.778059 TGTTGAGATAAATAAGTTAGTGGGGAT 58.222 33.333 0.00 0.00 0.00 3.85
310 311 9.057089 GTTGAGATAAATAAGTTAGTGGGGATG 57.943 37.037 0.00 0.00 0.00 3.51
311 312 8.561536 TGAGATAAATAAGTTAGTGGGGATGA 57.438 34.615 0.00 0.00 0.00 2.92
312 313 8.429641 TGAGATAAATAAGTTAGTGGGGATGAC 58.570 37.037 0.00 0.00 0.00 3.06
313 314 8.568617 AGATAAATAAGTTAGTGGGGATGACT 57.431 34.615 0.00 0.00 0.00 3.41
314 315 8.652290 AGATAAATAAGTTAGTGGGGATGACTC 58.348 37.037 0.00 0.00 0.00 3.36
315 316 6.893020 AAATAAGTTAGTGGGGATGACTCT 57.107 37.500 0.00 0.00 0.00 3.24
316 317 6.487299 AATAAGTTAGTGGGGATGACTCTC 57.513 41.667 0.00 0.00 0.00 3.20
317 318 3.767309 AGTTAGTGGGGATGACTCTCT 57.233 47.619 0.00 0.00 0.00 3.10
318 319 4.067944 AGTTAGTGGGGATGACTCTCTT 57.932 45.455 0.00 0.00 0.00 2.85
319 320 5.208294 AGTTAGTGGGGATGACTCTCTTA 57.792 43.478 0.00 0.00 0.00 2.10
320 321 5.205056 AGTTAGTGGGGATGACTCTCTTAG 58.795 45.833 0.00 0.00 0.00 2.18
321 322 3.039252 AGTGGGGATGACTCTCTTAGG 57.961 52.381 0.00 0.00 0.00 2.69
322 323 2.316372 AGTGGGGATGACTCTCTTAGGT 59.684 50.000 0.00 0.00 0.00 3.08
323 324 3.532232 AGTGGGGATGACTCTCTTAGGTA 59.468 47.826 0.00 0.00 0.00 3.08
324 325 4.171044 AGTGGGGATGACTCTCTTAGGTAT 59.829 45.833 0.00 0.00 0.00 2.73
325 326 5.375956 AGTGGGGATGACTCTCTTAGGTATA 59.624 44.000 0.00 0.00 0.00 1.47
326 327 6.047359 AGTGGGGATGACTCTCTTAGGTATAT 59.953 42.308 0.00 0.00 0.00 0.86
327 328 7.242101 AGTGGGGATGACTCTCTTAGGTATATA 59.758 40.741 0.00 0.00 0.00 0.86
328 329 7.894364 GTGGGGATGACTCTCTTAGGTATATAA 59.106 40.741 0.00 0.00 0.00 0.98
329 330 8.116669 TGGGGATGACTCTCTTAGGTATATAAG 58.883 40.741 0.00 0.00 34.63 1.73
330 331 8.337739 GGGGATGACTCTCTTAGGTATATAAGA 58.662 40.741 0.00 0.00 39.02 2.10
331 332 9.930158 GGGATGACTCTCTTAGGTATATAAGAT 57.070 37.037 0.00 0.00 40.18 2.40
366 367 8.492782 AGATATTTCTTGATGACTGATTCCACT 58.507 33.333 0.00 0.00 0.00 4.00
377 378 5.012046 TGACTGATTCCACTACACATCAAGT 59.988 40.000 0.00 0.00 0.00 3.16
393 394 8.299570 ACACATCAAGTTTGATCCTCAATAAAC 58.700 33.333 4.43 0.00 45.62 2.01
397 399 4.270008 AGTTTGATCCTCAATAAACGGGG 58.730 43.478 0.00 0.00 36.11 5.73
398 400 3.290948 TTGATCCTCAATAAACGGGGG 57.709 47.619 0.00 0.00 30.26 5.40
402 404 3.810721 TCCTCAATAAACGGGGGAAAA 57.189 42.857 0.00 0.00 0.00 2.29
413 415 2.114411 GGGAAAACCCTCGTGCCA 59.886 61.111 0.00 0.00 34.51 4.92
423 425 1.956170 CTCGTGCCACACCTGTCAC 60.956 63.158 0.00 0.00 0.00 3.67
426 428 1.095228 CGTGCCACACCTGTCACTTT 61.095 55.000 0.00 0.00 0.00 2.66
430 432 1.880027 GCCACACCTGTCACTTTTAGG 59.120 52.381 0.00 0.00 37.61 2.69
446 448 2.953466 TAGGAATTGAACTCGGGTCG 57.047 50.000 0.00 0.00 0.00 4.79
451 453 3.367703 GGAATTGAACTCGGGTCGTTAGA 60.368 47.826 0.00 0.00 0.00 2.10
514 516 8.621532 TTTAAGCTTCATGTGTACTTGAATCT 57.378 30.769 0.00 10.82 38.68 2.40
527 529 6.716628 TGTACTTGAATCTGCCTTTCATCTTT 59.283 34.615 0.00 0.00 33.37 2.52
529 531 6.685657 ACTTGAATCTGCCTTTCATCTTTTC 58.314 36.000 0.00 0.00 33.37 2.29
549 551 9.333724 TCTTTTCGGAGACTAAAAATACACTTT 57.666 29.630 0.00 0.00 34.97 2.66
660 665 6.376581 ACTTGATTTTCTCTTCTGGCAATAGG 59.623 38.462 0.00 0.00 0.00 2.57
699 704 7.240674 TGGATTGATTTTTCGTATCAAACTCG 58.759 34.615 0.00 0.00 43.14 4.18
704 709 8.483743 TGATTTTTCGTATCAAACTCGTTTTC 57.516 30.769 0.00 0.00 0.00 2.29
716 721 4.297299 ACTCGTTTTCAGACAAGACGTA 57.703 40.909 0.00 0.00 35.42 3.57
751 756 9.891828 TGATTTTATCAACGCCATCAATAATAC 57.108 29.630 0.00 0.00 36.11 1.89
754 759 7.667043 TTATCAACGCCATCAATAATACTCC 57.333 36.000 0.00 0.00 0.00 3.85
755 760 5.290493 TCAACGCCATCAATAATACTCCT 57.710 39.130 0.00 0.00 0.00 3.69
756 761 5.680619 TCAACGCCATCAATAATACTCCTT 58.319 37.500 0.00 0.00 0.00 3.36
757 762 5.758296 TCAACGCCATCAATAATACTCCTTC 59.242 40.000 0.00 0.00 0.00 3.46
758 763 5.290493 ACGCCATCAATAATACTCCTTCA 57.710 39.130 0.00 0.00 0.00 3.02
760 765 5.163301 ACGCCATCAATAATACTCCTTCAGT 60.163 40.000 0.00 0.00 39.41 3.41
761 766 5.406780 CGCCATCAATAATACTCCTTCAGTC 59.593 44.000 0.00 0.00 36.43 3.51
763 768 6.648725 GCCATCAATAATACTCCTTCAGTCTC 59.351 42.308 0.00 0.00 36.43 3.36
764 769 7.687837 GCCATCAATAATACTCCTTCAGTCTCA 60.688 40.741 0.00 0.00 36.43 3.27
765 770 7.871973 CCATCAATAATACTCCTTCAGTCTCAG 59.128 40.741 0.00 0.00 36.43 3.35
766 771 8.637099 CATCAATAATACTCCTTCAGTCTCAGA 58.363 37.037 0.00 0.00 36.43 3.27
767 772 8.595362 TCAATAATACTCCTTCAGTCTCAGAA 57.405 34.615 0.00 0.00 36.43 3.02
773 778 6.219417 ACTCCTTCAGTCTCAGAATATGTG 57.781 41.667 0.00 0.00 0.00 3.21
777 782 6.438741 TCCTTCAGTCTCAGAATATGTGTCTT 59.561 38.462 0.00 0.00 0.00 3.01
778 783 7.615757 TCCTTCAGTCTCAGAATATGTGTCTTA 59.384 37.037 0.00 0.00 0.00 2.10
779 784 8.253810 CCTTCAGTCTCAGAATATGTGTCTTAA 58.746 37.037 0.00 0.00 0.00 1.85
780 785 8.988064 TTCAGTCTCAGAATATGTGTCTTAAC 57.012 34.615 0.00 0.00 0.00 2.01
847 852 3.971150 TGGTGCGTTTTCCATGTAAAAG 58.029 40.909 0.00 0.00 0.00 2.27
849 854 4.098044 TGGTGCGTTTTCCATGTAAAAGAA 59.902 37.500 0.00 0.00 0.00 2.52
916 924 4.080469 ACTCTGTTTGAGATGCAGATCCAT 60.080 41.667 0.00 0.00 45.39 3.41
979 988 2.819595 CACCTCGCAATGTCCCCG 60.820 66.667 0.00 0.00 0.00 5.73
993 1002 2.180204 CCCCGAGCCGCAATACTTG 61.180 63.158 0.00 0.00 0.00 3.16
1082 1093 0.875474 CACCAAAAGCACCAAAGCGG 60.875 55.000 0.00 0.00 40.15 5.52
1171 1182 0.035630 CTTCTGCCCTTCCACTCCAG 60.036 60.000 0.00 0.00 0.00 3.86
1524 1541 4.666397 TGCTACGCGCGGTTCCAA 62.666 61.111 35.22 11.48 43.27 3.53
1557 1574 0.108281 GGGCAGGTCGTCTTCTAACC 60.108 60.000 0.00 0.00 0.00 2.85
1559 1576 1.275573 GGCAGGTCGTCTTCTAACCTT 59.724 52.381 0.00 0.00 41.48 3.50
1651 1668 2.827642 GGAGCAGCTGGACATGGC 60.828 66.667 17.12 0.00 0.00 4.40
1667 1684 4.007940 GCGTGCGCGAAGGAAACA 62.008 61.111 26.19 0.00 41.33 2.83
1668 1685 2.629210 CGTGCGCGAAGGAAACAA 59.371 55.556 16.08 0.00 41.33 2.83
1703 1720 1.081092 TGAGGGGGAGGAGGAAGTG 59.919 63.158 0.00 0.00 0.00 3.16
1712 1729 0.178873 AGGAGGAAGTGGGCCAGTTA 60.179 55.000 26.04 0.00 0.00 2.24
1713 1730 0.919710 GGAGGAAGTGGGCCAGTTAT 59.080 55.000 26.04 17.58 0.00 1.89
2115 2132 0.895530 TCTTCTGGCACTCCTTACCG 59.104 55.000 0.00 0.00 0.00 4.02
2376 2393 1.067142 CGTTCTCCGTCATCCTTTCCA 60.067 52.381 0.00 0.00 0.00 3.53
2384 2401 0.034198 TCATCCTTTCCAACGACGCA 59.966 50.000 0.00 0.00 0.00 5.24
2441 2458 0.249120 TGTACGACATGAGCAAGGGG 59.751 55.000 0.00 0.00 0.00 4.79
2591 2608 2.264794 GACATCAACGGCGGAGGT 59.735 61.111 13.24 7.60 31.07 3.85
3045 3063 8.930760 CGGATAGAAGAAGATTATTCATGAACC 58.069 37.037 11.07 0.50 31.13 3.62
3054 5817 7.934855 AGATTATTCATGAACCCATCTATGC 57.065 36.000 11.07 0.00 0.00 3.14
3084 5847 1.519719 CTGCTCTACCCAGACAGGC 59.480 63.158 0.00 0.00 35.39 4.85
3120 5883 0.954452 CAAAGACAGGGTGCCTTCAC 59.046 55.000 0.00 0.00 42.40 3.18
3127 5890 2.308570 ACAGGGTGCCTTCACATCAATA 59.691 45.455 0.00 0.00 44.87 1.90
3131 5894 4.074970 GGGTGCCTTCACATCAATATAGG 58.925 47.826 0.00 0.00 44.87 2.57
3134 5897 5.368145 GTGCCTTCACATCAATATAGGTGA 58.632 41.667 0.00 0.00 42.66 4.02
3271 6036 3.821600 GGCTGATCATCATCTTTGCAGAT 59.178 43.478 0.00 0.00 40.79 2.90
3277 6042 7.052248 TGATCATCATCTTTGCAGATACAAGT 58.948 34.615 0.00 0.00 37.71 3.16
3291 6056 8.360390 TGCAGATACAAGTAGATTATTCACGAT 58.640 33.333 0.00 0.00 0.00 3.73
3311 6076 7.915923 TCACGATCTCATCTTTGTGTTAGATAC 59.084 37.037 0.00 0.00 31.32 2.24
3339 6104 2.399356 GGCCTTGGTAAGCACGAGC 61.399 63.158 0.00 0.00 42.56 5.03
3387 6152 1.680338 GCGGGGTGCTTTAAGATCAT 58.320 50.000 0.00 0.00 41.73 2.45
3396 6161 5.591877 GGTGCTTTAAGATCATTGGAGATGT 59.408 40.000 0.00 0.00 0.00 3.06
3450 6215 7.566760 AAGTTTTTCATAAAAAGGCCTTTGG 57.433 32.000 31.02 19.63 40.71 3.28
3543 6308 6.981762 AGTCATCTTCTTTGCAGATACAAG 57.018 37.500 0.00 0.00 29.36 3.16
3578 6343 3.198635 TGAACTCATCTCTGGGTTGGATC 59.801 47.826 0.00 0.00 46.23 3.36
3585 6350 4.834406 TCTCTGGGTTGGATCTACCTAT 57.166 45.455 14.48 0.00 39.86 2.57
3604 6369 3.376078 CCAGCCTTTGGTGCGCAT 61.376 61.111 15.91 0.00 42.41 4.73
3707 6472 1.444917 ATGTGCGGCATCAGAGCATG 61.445 55.000 5.72 0.00 43.17 4.06
3794 6559 2.837498 GGCACCAACAAAATTTCTGCT 58.163 42.857 0.00 0.00 0.00 4.24
3796 6561 3.248363 GGCACCAACAAAATTTCTGCTTC 59.752 43.478 0.00 0.00 0.00 3.86
3801 6566 7.201600 GCACCAACAAAATTTCTGCTTCTTTAA 60.202 33.333 0.00 0.00 0.00 1.52
3803 6568 8.040727 ACCAACAAAATTTCTGCTTCTTTAACT 58.959 29.630 0.00 0.00 0.00 2.24
3841 6606 5.010617 TGCCCTAAAATTTGTCCTTCTTCAC 59.989 40.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.753867 GCTCCTGTAGAACCCTAGCC 59.246 60.000 0.00 0.00 0.00 3.93
1 2 1.410882 CAGCTCCTGTAGAACCCTAGC 59.589 57.143 0.00 0.00 0.00 3.42
2 3 1.410882 GCAGCTCCTGTAGAACCCTAG 59.589 57.143 0.00 0.00 33.43 3.02
3 4 1.007238 AGCAGCTCCTGTAGAACCCTA 59.993 52.381 0.00 0.00 33.43 3.53
4 5 0.252467 AGCAGCTCCTGTAGAACCCT 60.252 55.000 0.00 0.00 33.43 4.34
5 6 0.107945 CAGCAGCTCCTGTAGAACCC 60.108 60.000 0.00 0.00 33.43 4.11
6 7 0.107945 CCAGCAGCTCCTGTAGAACC 60.108 60.000 3.46 0.00 33.43 3.62
7 8 0.898320 TCCAGCAGCTCCTGTAGAAC 59.102 55.000 3.46 0.00 33.43 3.01
8 9 1.871418 ATCCAGCAGCTCCTGTAGAA 58.129 50.000 3.46 0.00 33.43 2.10
9 10 1.871418 AATCCAGCAGCTCCTGTAGA 58.129 50.000 3.46 0.00 33.43 2.59
10 11 2.706339 AAATCCAGCAGCTCCTGTAG 57.294 50.000 3.46 0.00 33.43 2.74
11 12 4.778213 ATAAAATCCAGCAGCTCCTGTA 57.222 40.909 3.46 0.00 33.43 2.74
12 13 3.659183 ATAAAATCCAGCAGCTCCTGT 57.341 42.857 3.46 0.00 33.43 4.00
13 14 5.645497 GGTATATAAAATCCAGCAGCTCCTG 59.355 44.000 0.00 0.00 34.12 3.86
14 15 5.280727 GGGTATATAAAATCCAGCAGCTCCT 60.281 44.000 0.00 0.00 0.00 3.69
15 16 4.944317 GGGTATATAAAATCCAGCAGCTCC 59.056 45.833 0.00 0.00 0.00 4.70
16 17 5.560724 TGGGTATATAAAATCCAGCAGCTC 58.439 41.667 0.00 0.00 0.00 4.09
17 18 5.582950 TGGGTATATAAAATCCAGCAGCT 57.417 39.130 0.00 0.00 0.00 4.24
18 19 6.543831 CCTATGGGTATATAAAATCCAGCAGC 59.456 42.308 0.00 0.00 0.00 5.25
19 20 7.554118 CACCTATGGGTATATAAAATCCAGCAG 59.446 40.741 0.00 0.00 45.41 4.24
20 21 7.238723 TCACCTATGGGTATATAAAATCCAGCA 59.761 37.037 0.00 0.00 45.41 4.41
21 22 7.630082 TCACCTATGGGTATATAAAATCCAGC 58.370 38.462 0.00 0.00 45.41 4.85
27 28 9.496873 CGTCATTTCACCTATGGGTATATAAAA 57.503 33.333 0.00 0.00 45.41 1.52
28 29 8.872134 TCGTCATTTCACCTATGGGTATATAAA 58.128 33.333 0.00 0.31 45.41 1.40
29 30 8.308931 GTCGTCATTTCACCTATGGGTATATAA 58.691 37.037 0.00 0.00 45.41 0.98
30 31 7.672660 AGTCGTCATTTCACCTATGGGTATATA 59.327 37.037 0.00 0.00 45.41 0.86
31 32 6.497259 AGTCGTCATTTCACCTATGGGTATAT 59.503 38.462 0.00 0.00 45.41 0.86
32 33 5.836898 AGTCGTCATTTCACCTATGGGTATA 59.163 40.000 0.00 0.00 45.41 1.47
33 34 4.654262 AGTCGTCATTTCACCTATGGGTAT 59.346 41.667 0.00 0.00 45.41 2.73
34 35 4.028131 AGTCGTCATTTCACCTATGGGTA 58.972 43.478 0.00 0.00 45.41 3.69
36 37 3.543680 AGTCGTCATTTCACCTATGGG 57.456 47.619 0.00 0.00 38.88 4.00
37 38 6.157211 GGTATAGTCGTCATTTCACCTATGG 58.843 44.000 0.00 0.00 0.00 2.74
38 39 6.015350 AGGGTATAGTCGTCATTTCACCTATG 60.015 42.308 0.00 0.00 0.00 2.23
39 40 6.075984 AGGGTATAGTCGTCATTTCACCTAT 58.924 40.000 0.00 0.00 0.00 2.57
40 41 5.452255 AGGGTATAGTCGTCATTTCACCTA 58.548 41.667 0.00 0.00 0.00 3.08
41 42 4.287552 AGGGTATAGTCGTCATTTCACCT 58.712 43.478 0.00 0.00 0.00 4.00
42 43 4.667519 AGGGTATAGTCGTCATTTCACC 57.332 45.455 0.00 0.00 0.00 4.02
43 44 4.809426 CCAAGGGTATAGTCGTCATTTCAC 59.191 45.833 0.00 0.00 0.00 3.18
44 45 4.468510 ACCAAGGGTATAGTCGTCATTTCA 59.531 41.667 0.00 0.00 32.11 2.69
45 46 4.809426 CACCAAGGGTATAGTCGTCATTTC 59.191 45.833 0.00 0.00 32.11 2.17
46 47 4.766375 CACCAAGGGTATAGTCGTCATTT 58.234 43.478 0.00 0.00 32.11 2.32
47 48 3.431766 GCACCAAGGGTATAGTCGTCATT 60.432 47.826 0.00 0.00 32.11 2.57
48 49 2.102588 GCACCAAGGGTATAGTCGTCAT 59.897 50.000 0.00 0.00 32.11 3.06
49 50 1.479323 GCACCAAGGGTATAGTCGTCA 59.521 52.381 0.00 0.00 32.11 4.35
50 51 1.479323 TGCACCAAGGGTATAGTCGTC 59.521 52.381 0.00 0.00 32.11 4.20
51 52 1.206371 GTGCACCAAGGGTATAGTCGT 59.794 52.381 5.22 0.00 32.11 4.34
52 53 1.472728 GGTGCACCAAGGGTATAGTCG 60.473 57.143 31.23 0.00 32.11 4.18
53 54 1.472728 CGGTGCACCAAGGGTATAGTC 60.473 57.143 34.16 3.75 32.11 2.59
54 55 0.539986 CGGTGCACCAAGGGTATAGT 59.460 55.000 34.16 0.00 32.11 2.12
55 56 0.828022 TCGGTGCACCAAGGGTATAG 59.172 55.000 34.16 15.32 32.11 1.31
56 57 1.502690 ATCGGTGCACCAAGGGTATA 58.497 50.000 34.16 9.77 32.11 1.47
57 58 0.623723 AATCGGTGCACCAAGGGTAT 59.376 50.000 34.16 14.51 32.11 2.73
58 59 0.402504 AAATCGGTGCACCAAGGGTA 59.597 50.000 34.16 12.89 32.11 3.69
59 60 0.469144 AAAATCGGTGCACCAAGGGT 60.469 50.000 34.16 13.07 35.62 4.34
60 61 1.201414 GTAAAATCGGTGCACCAAGGG 59.799 52.381 34.16 18.65 35.14 3.95
61 62 1.883275 TGTAAAATCGGTGCACCAAGG 59.117 47.619 34.16 19.02 35.14 3.61
62 63 2.292016 TGTGTAAAATCGGTGCACCAAG 59.708 45.455 34.16 19.77 35.14 3.61
63 64 2.298610 TGTGTAAAATCGGTGCACCAA 58.701 42.857 34.16 19.42 35.14 3.67
64 65 1.968704 TGTGTAAAATCGGTGCACCA 58.031 45.000 34.16 21.66 35.14 4.17
65 66 2.415357 CCATGTGTAAAATCGGTGCACC 60.415 50.000 26.78 26.78 0.00 5.01
66 67 2.227865 ACCATGTGTAAAATCGGTGCAC 59.772 45.455 8.80 8.80 0.00 4.57
67 68 2.227626 CACCATGTGTAAAATCGGTGCA 59.772 45.455 0.00 0.00 37.68 4.57
68 69 2.415357 CCACCATGTGTAAAATCGGTGC 60.415 50.000 0.00 0.00 42.06 5.01
69 70 2.415357 GCCACCATGTGTAAAATCGGTG 60.415 50.000 0.00 0.00 42.84 4.94
70 71 1.816224 GCCACCATGTGTAAAATCGGT 59.184 47.619 0.00 0.00 0.00 4.69
71 72 1.815613 TGCCACCATGTGTAAAATCGG 59.184 47.619 0.00 0.00 0.00 4.18
72 73 3.437428 CATGCCACCATGTGTAAAATCG 58.563 45.455 0.00 0.00 43.07 3.34
83 84 3.245229 TGGTAGAAAACTCATGCCACCAT 60.245 43.478 0.00 0.00 30.11 3.55
84 85 2.107378 TGGTAGAAAACTCATGCCACCA 59.893 45.455 0.00 0.00 32.58 4.17
85 86 2.488153 GTGGTAGAAAACTCATGCCACC 59.512 50.000 0.00 0.00 39.01 4.61
86 87 3.412386 AGTGGTAGAAAACTCATGCCAC 58.588 45.455 3.81 3.81 43.56 5.01
87 88 3.788227 AGTGGTAGAAAACTCATGCCA 57.212 42.857 0.00 0.00 0.00 4.92
88 89 5.880332 TGAATAGTGGTAGAAAACTCATGCC 59.120 40.000 0.00 0.00 0.00 4.40
89 90 6.595716 AGTGAATAGTGGTAGAAAACTCATGC 59.404 38.462 0.00 0.00 0.00 4.06
90 91 7.413438 GCAGTGAATAGTGGTAGAAAACTCATG 60.413 40.741 0.00 0.00 0.00 3.07
91 92 6.595716 GCAGTGAATAGTGGTAGAAAACTCAT 59.404 38.462 0.00 0.00 0.00 2.90
92 93 5.932303 GCAGTGAATAGTGGTAGAAAACTCA 59.068 40.000 0.00 0.00 0.00 3.41
93 94 6.166982 AGCAGTGAATAGTGGTAGAAAACTC 58.833 40.000 0.00 0.00 36.26 3.01
94 95 6.115448 AGCAGTGAATAGTGGTAGAAAACT 57.885 37.500 0.00 0.00 36.26 2.66
95 96 6.872020 TGTAGCAGTGAATAGTGGTAGAAAAC 59.128 38.462 0.00 0.00 39.98 2.43
96 97 6.999950 TGTAGCAGTGAATAGTGGTAGAAAA 58.000 36.000 0.00 0.00 39.98 2.29
97 98 6.599356 TGTAGCAGTGAATAGTGGTAGAAA 57.401 37.500 0.00 0.00 39.98 2.52
98 99 6.395629 GTTGTAGCAGTGAATAGTGGTAGAA 58.604 40.000 0.00 0.00 39.98 2.10
99 100 5.392703 CGTTGTAGCAGTGAATAGTGGTAGA 60.393 44.000 0.00 0.00 39.98 2.59
100 101 4.798907 CGTTGTAGCAGTGAATAGTGGTAG 59.201 45.833 0.00 0.00 39.98 3.18
101 102 4.740268 CGTTGTAGCAGTGAATAGTGGTA 58.260 43.478 0.00 0.00 38.76 3.25
102 103 3.585862 CGTTGTAGCAGTGAATAGTGGT 58.414 45.455 0.00 0.00 40.77 4.16
103 104 2.348666 GCGTTGTAGCAGTGAATAGTGG 59.651 50.000 0.00 0.00 37.05 4.00
104 105 2.348666 GGCGTTGTAGCAGTGAATAGTG 59.651 50.000 0.00 0.00 39.27 2.74
105 106 2.618053 GGCGTTGTAGCAGTGAATAGT 58.382 47.619 0.00 0.00 39.27 2.12
106 107 1.588404 CGGCGTTGTAGCAGTGAATAG 59.412 52.381 0.00 0.00 39.27 1.73
107 108 1.635844 CGGCGTTGTAGCAGTGAATA 58.364 50.000 0.00 0.00 39.27 1.75
108 109 1.019278 CCGGCGTTGTAGCAGTGAAT 61.019 55.000 6.01 0.00 39.27 2.57
109 110 1.666553 CCGGCGTTGTAGCAGTGAA 60.667 57.895 6.01 0.00 39.27 3.18
110 111 2.048597 CCGGCGTTGTAGCAGTGA 60.049 61.111 6.01 0.00 39.27 3.41
111 112 3.118454 CCCGGCGTTGTAGCAGTG 61.118 66.667 6.01 0.00 39.27 3.66
112 113 3.584868 GACCCGGCGTTGTAGCAGT 62.585 63.158 6.01 0.00 39.27 4.40
113 114 2.813908 GACCCGGCGTTGTAGCAG 60.814 66.667 6.01 0.00 39.27 4.24
114 115 3.291101 GAGACCCGGCGTTGTAGCA 62.291 63.158 6.01 0.00 39.27 3.49
115 116 2.508663 GAGACCCGGCGTTGTAGC 60.509 66.667 6.01 0.00 0.00 3.58
116 117 2.001361 ATCGAGACCCGGCGTTGTAG 62.001 60.000 6.01 0.00 39.14 2.74
117 118 1.996786 GATCGAGACCCGGCGTTGTA 61.997 60.000 6.01 0.00 39.14 2.41
118 119 3.352338 GATCGAGACCCGGCGTTGT 62.352 63.158 6.01 1.88 39.14 3.32
119 120 2.582498 GATCGAGACCCGGCGTTG 60.582 66.667 6.01 0.00 39.14 4.10
120 121 3.834799 GGATCGAGACCCGGCGTT 61.835 66.667 6.01 0.00 39.14 4.84
123 124 3.296054 ATCGGATCGAGACCCGGC 61.296 66.667 19.15 0.00 45.36 6.13
124 125 2.645567 CATCGGATCGAGACCCGG 59.354 66.667 19.15 0.00 45.36 5.73
125 126 2.645567 CCATCGGATCGAGACCCG 59.354 66.667 15.00 15.00 46.57 5.28
126 127 2.340443 GCCATCGGATCGAGACCC 59.660 66.667 5.96 0.00 39.91 4.46
127 128 2.340443 GGCCATCGGATCGAGACC 59.660 66.667 0.00 0.00 39.91 3.85
128 129 2.340443 GGGCCATCGGATCGAGAC 59.660 66.667 4.39 0.00 39.91 3.36
129 130 2.123468 TGGGCCATCGGATCGAGA 60.123 61.111 0.00 0.00 39.91 4.04
130 131 2.341543 CTGGGCCATCGGATCGAG 59.658 66.667 6.72 0.00 39.91 4.04
131 132 3.928779 GCTGGGCCATCGGATCGA 61.929 66.667 6.72 0.00 41.13 3.59
132 133 3.873026 GAGCTGGGCCATCGGATCG 62.873 68.421 6.72 0.00 0.00 3.69
133 134 2.031768 GAGCTGGGCCATCGGATC 59.968 66.667 6.72 0.00 0.00 3.36
134 135 3.564218 GGAGCTGGGCCATCGGAT 61.564 66.667 6.72 0.00 0.00 4.18
135 136 4.804420 AGGAGCTGGGCCATCGGA 62.804 66.667 6.72 0.00 0.00 4.55
136 137 4.247380 GAGGAGCTGGGCCATCGG 62.247 72.222 6.72 0.00 0.00 4.18
137 138 4.247380 GGAGGAGCTGGGCCATCG 62.247 72.222 6.72 0.00 0.00 3.84
138 139 3.092511 TGGAGGAGCTGGGCCATC 61.093 66.667 6.72 1.65 0.00 3.51
139 140 3.095163 CTGGAGGAGCTGGGCCAT 61.095 66.667 6.72 0.00 0.00 4.40
140 141 4.664267 ACTGGAGGAGCTGGGCCA 62.664 66.667 5.85 5.85 0.00 5.36
141 142 4.106925 CACTGGAGGAGCTGGGCC 62.107 72.222 0.00 0.00 0.00 5.80
142 143 4.106925 CCACTGGAGGAGCTGGGC 62.107 72.222 0.00 0.00 0.00 5.36
143 144 4.106925 GCCACTGGAGGAGCTGGG 62.107 72.222 0.00 0.00 0.00 4.45
144 145 2.600729 AAGCCACTGGAGGAGCTGG 61.601 63.158 0.00 0.00 35.30 4.85
145 146 1.376942 CAAGCCACTGGAGGAGCTG 60.377 63.158 0.00 0.00 35.30 4.24
146 147 0.913451 ATCAAGCCACTGGAGGAGCT 60.913 55.000 0.00 0.00 37.10 4.09
147 148 0.463474 GATCAAGCCACTGGAGGAGC 60.463 60.000 0.00 0.00 0.00 4.70
148 149 1.134461 CAGATCAAGCCACTGGAGGAG 60.134 57.143 0.00 0.00 0.00 3.69
149 150 0.907486 CAGATCAAGCCACTGGAGGA 59.093 55.000 0.00 0.00 0.00 3.71
150 151 0.907486 TCAGATCAAGCCACTGGAGG 59.093 55.000 0.00 0.00 33.19 4.30
151 152 1.277273 TGTCAGATCAAGCCACTGGAG 59.723 52.381 0.00 0.00 33.19 3.86
152 153 1.277273 CTGTCAGATCAAGCCACTGGA 59.723 52.381 0.00 0.00 33.19 3.86
153 154 1.735386 CTGTCAGATCAAGCCACTGG 58.265 55.000 0.00 0.00 33.19 4.00
154 155 1.085091 GCTGTCAGATCAAGCCACTG 58.915 55.000 3.32 0.00 0.00 3.66
155 156 0.035630 GGCTGTCAGATCAAGCCACT 60.036 55.000 18.52 0.00 44.42 4.00
156 157 2.475666 GGCTGTCAGATCAAGCCAC 58.524 57.895 18.52 0.00 44.42 5.01
158 159 2.698855 TTAGGCTGTCAGATCAAGCC 57.301 50.000 16.67 16.67 45.30 4.35
159 160 3.247173 CGATTTAGGCTGTCAGATCAAGC 59.753 47.826 3.32 0.00 0.00 4.01
160 161 3.247173 GCGATTTAGGCTGTCAGATCAAG 59.753 47.826 3.32 0.00 0.00 3.02
161 162 3.198068 GCGATTTAGGCTGTCAGATCAA 58.802 45.455 3.32 0.00 0.00 2.57
162 163 2.168313 TGCGATTTAGGCTGTCAGATCA 59.832 45.455 3.32 0.00 0.00 2.92
163 164 2.826428 TGCGATTTAGGCTGTCAGATC 58.174 47.619 3.32 0.00 0.00 2.75
164 165 2.988010 TGCGATTTAGGCTGTCAGAT 57.012 45.000 3.32 0.00 0.00 2.90
165 166 2.168313 TGATGCGATTTAGGCTGTCAGA 59.832 45.455 3.32 0.00 0.00 3.27
166 167 2.554142 TGATGCGATTTAGGCTGTCAG 58.446 47.619 0.00 0.00 0.00 3.51
167 168 2.689553 TGATGCGATTTAGGCTGTCA 57.310 45.000 0.00 0.00 0.00 3.58
168 169 4.355543 TTTTGATGCGATTTAGGCTGTC 57.644 40.909 0.00 0.00 0.00 3.51
169 170 4.782019 TTTTTGATGCGATTTAGGCTGT 57.218 36.364 0.00 0.00 0.00 4.40
187 188 1.203052 TCTAGCCGTCGGATCGTTTTT 59.797 47.619 17.49 0.00 0.00 1.94
188 189 0.813184 TCTAGCCGTCGGATCGTTTT 59.187 50.000 17.49 0.00 0.00 2.43
189 190 0.813184 TTCTAGCCGTCGGATCGTTT 59.187 50.000 17.49 0.00 0.00 3.60
190 191 0.381089 CTTCTAGCCGTCGGATCGTT 59.619 55.000 17.49 0.00 0.00 3.85
191 192 0.747283 ACTTCTAGCCGTCGGATCGT 60.747 55.000 17.49 1.48 0.00 3.73
192 193 0.041135 GACTTCTAGCCGTCGGATCG 60.041 60.000 17.49 4.77 0.00 3.69
193 194 0.311477 GGACTTCTAGCCGTCGGATC 59.689 60.000 17.49 0.00 0.00 3.36
194 195 1.108132 GGGACTTCTAGCCGTCGGAT 61.108 60.000 17.49 12.48 0.00 4.18
195 196 1.751927 GGGACTTCTAGCCGTCGGA 60.752 63.158 17.49 0.00 0.00 4.55
196 197 1.753463 AGGGACTTCTAGCCGTCGG 60.753 63.158 6.99 6.99 27.25 4.79
197 198 1.030488 TCAGGGACTTCTAGCCGTCG 61.030 60.000 5.52 0.00 34.60 5.12
198 199 0.741915 CTCAGGGACTTCTAGCCGTC 59.258 60.000 3.46 3.46 34.60 4.79
199 200 1.324005 GCTCAGGGACTTCTAGCCGT 61.324 60.000 0.00 0.00 34.60 5.68
200 201 1.439644 GCTCAGGGACTTCTAGCCG 59.560 63.158 0.00 0.00 34.60 5.52
201 202 1.324005 ACGCTCAGGGACTTCTAGCC 61.324 60.000 0.00 0.00 34.60 3.93
202 203 0.533032 AACGCTCAGGGACTTCTAGC 59.467 55.000 0.00 0.00 34.60 3.42
203 204 1.819288 TCAACGCTCAGGGACTTCTAG 59.181 52.381 0.00 0.00 34.60 2.43
204 205 1.819288 CTCAACGCTCAGGGACTTCTA 59.181 52.381 0.00 0.00 34.60 2.10
205 206 0.605589 CTCAACGCTCAGGGACTTCT 59.394 55.000 0.00 0.00 34.60 2.85
206 207 0.603569 TCTCAACGCTCAGGGACTTC 59.396 55.000 0.00 0.00 34.60 3.01
207 208 0.605589 CTCTCAACGCTCAGGGACTT 59.394 55.000 0.00 0.00 34.60 3.01
208 209 0.251386 TCTCTCAACGCTCAGGGACT 60.251 55.000 0.00 0.00 43.88 3.85
209 210 0.172352 CTCTCTCAACGCTCAGGGAC 59.828 60.000 0.00 0.00 0.00 4.46
210 211 1.599606 GCTCTCTCAACGCTCAGGGA 61.600 60.000 0.00 0.00 0.00 4.20
211 212 1.153667 GCTCTCTCAACGCTCAGGG 60.154 63.158 0.00 0.00 0.00 4.45
212 213 0.246086 AAGCTCTCTCAACGCTCAGG 59.754 55.000 0.00 0.00 32.70 3.86
213 214 1.067985 TGAAGCTCTCTCAACGCTCAG 60.068 52.381 0.00 0.00 32.70 3.35
214 215 0.961753 TGAAGCTCTCTCAACGCTCA 59.038 50.000 0.00 0.00 32.70 4.26
215 216 2.292103 ATGAAGCTCTCTCAACGCTC 57.708 50.000 0.00 0.00 32.70 5.03
216 217 2.758736 AATGAAGCTCTCTCAACGCT 57.241 45.000 0.00 0.00 35.09 5.07
217 218 3.425492 GGAAAATGAAGCTCTCTCAACGC 60.425 47.826 0.00 0.00 0.00 4.84
218 219 3.126000 GGGAAAATGAAGCTCTCTCAACG 59.874 47.826 0.00 0.00 0.00 4.10
219 220 3.441922 GGGGAAAATGAAGCTCTCTCAAC 59.558 47.826 0.00 0.00 0.00 3.18
220 221 3.331889 AGGGGAAAATGAAGCTCTCTCAA 59.668 43.478 0.00 0.00 0.00 3.02
221 222 2.915604 AGGGGAAAATGAAGCTCTCTCA 59.084 45.455 0.00 0.00 0.00 3.27
222 223 3.540617 GAGGGGAAAATGAAGCTCTCTC 58.459 50.000 0.00 0.00 0.00 3.20
223 224 2.093235 CGAGGGGAAAATGAAGCTCTCT 60.093 50.000 0.00 0.00 0.00 3.10
224 225 2.284190 CGAGGGGAAAATGAAGCTCTC 58.716 52.381 0.00 0.00 0.00 3.20
225 226 1.065126 CCGAGGGGAAAATGAAGCTCT 60.065 52.381 0.00 0.00 34.06 4.09
226 227 1.340114 ACCGAGGGGAAAATGAAGCTC 60.340 52.381 0.00 0.00 36.97 4.09
227 228 0.698818 ACCGAGGGGAAAATGAAGCT 59.301 50.000 0.00 0.00 36.97 3.74
228 229 1.472878 GAACCGAGGGGAAAATGAAGC 59.527 52.381 0.00 0.00 36.97 3.86
229 230 3.073274 AGAACCGAGGGGAAAATGAAG 57.927 47.619 0.00 0.00 36.97 3.02
230 231 3.518992 AAGAACCGAGGGGAAAATGAA 57.481 42.857 0.00 0.00 36.97 2.57
231 232 4.473559 AGATAAGAACCGAGGGGAAAATGA 59.526 41.667 0.00 0.00 36.97 2.57
232 233 4.781934 AGATAAGAACCGAGGGGAAAATG 58.218 43.478 0.00 0.00 36.97 2.32
233 234 4.722279 AGAGATAAGAACCGAGGGGAAAAT 59.278 41.667 0.00 0.00 36.97 1.82
234 235 4.081087 CAGAGATAAGAACCGAGGGGAAAA 60.081 45.833 0.00 0.00 36.97 2.29
235 236 3.451178 CAGAGATAAGAACCGAGGGGAAA 59.549 47.826 0.00 0.00 36.97 3.13
236 237 3.031736 CAGAGATAAGAACCGAGGGGAA 58.968 50.000 0.00 0.00 36.97 3.97
237 238 2.667470 CAGAGATAAGAACCGAGGGGA 58.333 52.381 0.00 0.00 36.97 4.81
238 239 1.689273 CCAGAGATAAGAACCGAGGGG 59.311 57.143 0.00 0.00 40.11 4.79
239 240 2.667470 TCCAGAGATAAGAACCGAGGG 58.333 52.381 0.00 0.00 0.00 4.30
240 241 5.712446 TCATATCCAGAGATAAGAACCGAGG 59.288 44.000 0.00 0.00 38.47 4.63
241 242 6.825944 TCATATCCAGAGATAAGAACCGAG 57.174 41.667 0.00 0.00 38.47 4.63
242 243 6.948309 TCATCATATCCAGAGATAAGAACCGA 59.052 38.462 0.00 0.00 36.55 4.69
243 244 7.163001 TCATCATATCCAGAGATAAGAACCG 57.837 40.000 0.00 0.00 36.55 4.44
244 245 7.180051 ACCTCATCATATCCAGAGATAAGAACC 59.820 40.741 0.00 0.00 36.55 3.62
245 246 8.034215 CACCTCATCATATCCAGAGATAAGAAC 58.966 40.741 0.00 0.00 36.55 3.01
246 247 7.179872 CCACCTCATCATATCCAGAGATAAGAA 59.820 40.741 0.00 0.00 36.55 2.52
247 248 6.666980 CCACCTCATCATATCCAGAGATAAGA 59.333 42.308 0.00 0.00 38.47 2.10
248 249 6.629963 GCCACCTCATCATATCCAGAGATAAG 60.630 46.154 0.00 0.00 38.47 1.73
249 250 5.188555 GCCACCTCATCATATCCAGAGATAA 59.811 44.000 0.00 0.00 38.47 1.75
250 251 4.713814 GCCACCTCATCATATCCAGAGATA 59.286 45.833 0.00 0.00 39.31 1.98
251 252 3.518705 GCCACCTCATCATATCCAGAGAT 59.481 47.826 0.00 0.00 36.44 2.75
252 253 2.902486 GCCACCTCATCATATCCAGAGA 59.098 50.000 0.00 0.00 0.00 3.10
253 254 2.636403 TGCCACCTCATCATATCCAGAG 59.364 50.000 0.00 0.00 0.00 3.35
254 255 2.693210 TGCCACCTCATCATATCCAGA 58.307 47.619 0.00 0.00 0.00 3.86
255 256 3.344515 CATGCCACCTCATCATATCCAG 58.655 50.000 0.00 0.00 0.00 3.86
256 257 2.553685 GCATGCCACCTCATCATATCCA 60.554 50.000 6.36 0.00 0.00 3.41
257 258 2.089980 GCATGCCACCTCATCATATCC 58.910 52.381 6.36 0.00 0.00 2.59
258 259 3.069079 AGCATGCCACCTCATCATATC 57.931 47.619 15.66 0.00 0.00 1.63
259 260 3.520691 AAGCATGCCACCTCATCATAT 57.479 42.857 15.66 0.00 0.00 1.78
260 261 3.136260 TGTAAGCATGCCACCTCATCATA 59.864 43.478 15.66 0.00 0.00 2.15
261 262 2.092267 TGTAAGCATGCCACCTCATCAT 60.092 45.455 15.66 0.00 0.00 2.45
262 263 1.281577 TGTAAGCATGCCACCTCATCA 59.718 47.619 15.66 0.12 0.00 3.07
263 264 2.042686 TGTAAGCATGCCACCTCATC 57.957 50.000 15.66 0.00 0.00 2.92
264 265 2.304092 CATGTAAGCATGCCACCTCAT 58.696 47.619 15.66 9.55 44.87 2.90
265 266 1.753930 CATGTAAGCATGCCACCTCA 58.246 50.000 15.66 7.55 44.87 3.86
280 281 9.396022 CCCACTAACTTATTTATCTCAACATGT 57.604 33.333 0.00 0.00 0.00 3.21
281 282 8.840321 CCCCACTAACTTATTTATCTCAACATG 58.160 37.037 0.00 0.00 0.00 3.21
282 283 8.778059 TCCCCACTAACTTATTTATCTCAACAT 58.222 33.333 0.00 0.00 0.00 2.71
283 284 8.153221 TCCCCACTAACTTATTTATCTCAACA 57.847 34.615 0.00 0.00 0.00 3.33
284 285 9.057089 CATCCCCACTAACTTATTTATCTCAAC 57.943 37.037 0.00 0.00 0.00 3.18
285 286 8.998814 TCATCCCCACTAACTTATTTATCTCAA 58.001 33.333 0.00 0.00 0.00 3.02
286 287 8.429641 GTCATCCCCACTAACTTATTTATCTCA 58.570 37.037 0.00 0.00 0.00 3.27
287 288 8.652290 AGTCATCCCCACTAACTTATTTATCTC 58.348 37.037 0.00 0.00 0.00 2.75
288 289 8.568617 AGTCATCCCCACTAACTTATTTATCT 57.431 34.615 0.00 0.00 0.00 1.98
289 290 8.652290 AGAGTCATCCCCACTAACTTATTTATC 58.348 37.037 0.00 0.00 0.00 1.75
290 291 8.568617 AGAGTCATCCCCACTAACTTATTTAT 57.431 34.615 0.00 0.00 0.00 1.40
291 292 7.844779 AGAGAGTCATCCCCACTAACTTATTTA 59.155 37.037 0.00 0.00 0.00 1.40
292 293 6.674419 AGAGAGTCATCCCCACTAACTTATTT 59.326 38.462 0.00 0.00 0.00 1.40
293 294 6.206042 AGAGAGTCATCCCCACTAACTTATT 58.794 40.000 0.00 0.00 0.00 1.40
294 295 5.782925 AGAGAGTCATCCCCACTAACTTAT 58.217 41.667 0.00 0.00 0.00 1.73
295 296 5.208294 AGAGAGTCATCCCCACTAACTTA 57.792 43.478 0.00 0.00 0.00 2.24
296 297 4.067944 AGAGAGTCATCCCCACTAACTT 57.932 45.455 0.00 0.00 0.00 2.66
297 298 3.767309 AGAGAGTCATCCCCACTAACT 57.233 47.619 0.00 0.00 0.00 2.24
298 299 4.342665 CCTAAGAGAGTCATCCCCACTAAC 59.657 50.000 0.00 0.00 0.00 2.34
299 300 4.016479 ACCTAAGAGAGTCATCCCCACTAA 60.016 45.833 0.00 0.00 0.00 2.24
300 301 3.532232 ACCTAAGAGAGTCATCCCCACTA 59.468 47.826 0.00 0.00 0.00 2.74
301 302 2.316372 ACCTAAGAGAGTCATCCCCACT 59.684 50.000 0.00 0.00 0.00 4.00
302 303 2.753247 ACCTAAGAGAGTCATCCCCAC 58.247 52.381 0.00 0.00 0.00 4.61
303 304 4.834406 ATACCTAAGAGAGTCATCCCCA 57.166 45.455 0.00 0.00 0.00 4.96
304 305 8.337739 TCTTATATACCTAAGAGAGTCATCCCC 58.662 40.741 0.00 0.00 33.78 4.81
305 306 9.930158 ATCTTATATACCTAAGAGAGTCATCCC 57.070 37.037 0.00 0.00 40.18 3.85
362 363 7.020040 TGAGGATCAAACTTGATGTGTAGTGG 61.020 42.308 9.63 0.00 45.97 4.00
397 399 1.527380 TGTGGCACGAGGGTTTTCC 60.527 57.895 13.77 0.00 39.75 3.13
398 400 1.652563 GTGTGGCACGAGGGTTTTC 59.347 57.895 13.77 0.00 0.00 2.29
402 404 3.941188 CAGGTGTGGCACGAGGGT 61.941 66.667 13.77 0.00 34.83 4.34
409 411 2.571212 CTAAAAGTGACAGGTGTGGCA 58.429 47.619 0.00 0.00 40.51 4.92
410 412 1.880027 CCTAAAAGTGACAGGTGTGGC 59.120 52.381 0.00 0.00 0.00 5.01
411 413 3.485463 TCCTAAAAGTGACAGGTGTGG 57.515 47.619 0.00 0.00 0.00 4.17
412 414 5.530915 TCAATTCCTAAAAGTGACAGGTGTG 59.469 40.000 0.00 0.00 0.00 3.82
413 415 5.690865 TCAATTCCTAAAAGTGACAGGTGT 58.309 37.500 0.00 0.00 0.00 4.16
423 425 4.092968 CGACCCGAGTTCAATTCCTAAAAG 59.907 45.833 0.00 0.00 0.00 2.27
426 428 2.564062 ACGACCCGAGTTCAATTCCTAA 59.436 45.455 0.00 0.00 0.00 2.69
430 432 3.611549 GTCTAACGACCCGAGTTCAATTC 59.388 47.826 0.00 0.00 33.98 2.17
451 453 5.783875 AGTACTACAAATCACTGTTAGGGGT 59.216 40.000 0.00 0.00 0.00 4.95
505 507 6.569226 CGAAAAGATGAAAGGCAGATTCAAGT 60.569 38.462 4.82 0.00 39.98 3.16
509 511 4.396166 TCCGAAAAGATGAAAGGCAGATTC 59.604 41.667 0.00 0.00 0.00 2.52
510 512 4.335416 TCCGAAAAGATGAAAGGCAGATT 58.665 39.130 0.00 0.00 0.00 2.40
514 516 3.074412 GTCTCCGAAAAGATGAAAGGCA 58.926 45.455 0.00 0.00 0.00 4.75
549 551 5.473846 TGGTTGCCAATAGACGACATAAAAA 59.526 36.000 0.00 0.00 0.00 1.94
716 721 4.092968 GCGTTGATAAAATCACGGAGACTT 59.907 41.667 11.18 0.00 39.39 3.01
751 756 6.096705 AGACACATATTCTGAGACTGAAGGAG 59.903 42.308 0.00 0.00 0.00 3.69
753 758 6.219417 AGACACATATTCTGAGACTGAAGG 57.781 41.667 0.00 0.00 0.00 3.46
754 759 9.081997 GTTAAGACACATATTCTGAGACTGAAG 57.918 37.037 0.00 0.00 0.00 3.02
755 760 8.807118 AGTTAAGACACATATTCTGAGACTGAA 58.193 33.333 0.00 0.00 0.00 3.02
756 761 8.354711 AGTTAAGACACATATTCTGAGACTGA 57.645 34.615 0.00 0.00 0.00 3.41
757 762 8.994429 AAGTTAAGACACATATTCTGAGACTG 57.006 34.615 0.00 0.00 0.00 3.51
758 763 9.429359 CAAAGTTAAGACACATATTCTGAGACT 57.571 33.333 0.00 0.00 0.00 3.24
800 805 9.975218 AGTAGTACATCCCAAAATAAATGTCTT 57.025 29.630 2.52 0.00 34.39 3.01
801 806 9.396022 CAGTAGTACATCCCAAAATAAATGTCT 57.604 33.333 2.52 0.00 34.39 3.41
802 807 8.621286 CCAGTAGTACATCCCAAAATAAATGTC 58.379 37.037 2.52 0.00 34.39 3.06
803 808 8.113462 ACCAGTAGTACATCCCAAAATAAATGT 58.887 33.333 2.52 0.00 36.40 2.71
804 809 8.405531 CACCAGTAGTACATCCCAAAATAAATG 58.594 37.037 2.52 0.00 0.00 2.32
805 810 7.068226 GCACCAGTAGTACATCCCAAAATAAAT 59.932 37.037 2.52 0.00 0.00 1.40
806 811 6.376018 GCACCAGTAGTACATCCCAAAATAAA 59.624 38.462 2.52 0.00 0.00 1.40
807 812 5.883673 GCACCAGTAGTACATCCCAAAATAA 59.116 40.000 2.52 0.00 0.00 1.40
808 813 5.433526 GCACCAGTAGTACATCCCAAAATA 58.566 41.667 2.52 0.00 0.00 1.40
809 814 4.270008 GCACCAGTAGTACATCCCAAAAT 58.730 43.478 2.52 0.00 0.00 1.82
810 815 3.681593 GCACCAGTAGTACATCCCAAAA 58.318 45.455 2.52 0.00 0.00 2.44
811 816 2.354303 CGCACCAGTAGTACATCCCAAA 60.354 50.000 2.52 0.00 0.00 3.28
812 817 1.206132 CGCACCAGTAGTACATCCCAA 59.794 52.381 2.52 0.00 0.00 4.12
813 818 0.821517 CGCACCAGTAGTACATCCCA 59.178 55.000 2.52 0.00 0.00 4.37
814 819 0.822164 ACGCACCAGTAGTACATCCC 59.178 55.000 2.52 0.00 0.00 3.85
815 820 2.667473 AACGCACCAGTAGTACATCC 57.333 50.000 2.52 0.00 0.00 3.51
816 821 3.370061 GGAAAACGCACCAGTAGTACATC 59.630 47.826 2.52 0.00 0.00 3.06
823 828 2.264005 ACATGGAAAACGCACCAGTA 57.736 45.000 0.00 0.00 39.62 2.74
916 924 2.139323 AGGTACTGACATGTCGCCTA 57.861 50.000 20.54 7.05 37.18 3.93
1194 1211 4.410400 GGTTGCAGGGAGGGACGG 62.410 72.222 0.00 0.00 0.00 4.79
1195 1212 4.410400 GGGTTGCAGGGAGGGACG 62.410 72.222 0.00 0.00 0.00 4.79
1196 1213 2.936032 AGGGTTGCAGGGAGGGAC 60.936 66.667 0.00 0.00 0.00 4.46
1538 1555 0.108281 GGTTAGAAGACGACCTGCCC 60.108 60.000 0.00 0.00 0.00 5.36
1557 1574 1.606531 CCCTGGAGGAGCAGGAAAG 59.393 63.158 0.00 0.00 40.95 2.62
1559 1576 3.011517 GCCCTGGAGGAGCAGGAA 61.012 66.667 0.00 0.00 40.95 3.36
1651 1668 0.991770 CTTTGTTTCCTTCGCGCACG 60.992 55.000 8.75 0.00 42.01 5.34
1662 1679 0.379316 ACCCGCAACGACTTTGTTTC 59.621 50.000 0.00 0.00 37.54 2.78
1667 1684 1.452470 ACCAACCCGCAACGACTTT 60.452 52.632 0.00 0.00 0.00 2.66
1668 1685 2.184167 CACCAACCCGCAACGACTT 61.184 57.895 0.00 0.00 0.00 3.01
1703 1720 2.019156 GCCTTCACTGATAACTGGCCC 61.019 57.143 0.00 0.00 33.45 5.80
1712 1729 1.001641 GCCCACAGCCTTCACTGAT 60.002 57.895 0.00 0.00 40.25 2.90
1713 1730 2.431683 GCCCACAGCCTTCACTGA 59.568 61.111 0.00 0.00 40.25 3.41
1970 1987 2.032681 AAGCTGGCAACCTCGACC 59.967 61.111 0.00 0.00 0.00 4.79
2376 2393 2.657296 CGACCTGTGTGCGTCGTT 60.657 61.111 1.62 0.00 45.20 3.85
2384 2401 0.034059 CTTGAAGCTCCGACCTGTGT 59.966 55.000 0.00 0.00 0.00 3.72
2489 2506 1.372748 CTCGGCGATGAGGATGAGC 60.373 63.158 11.27 0.00 32.18 4.26
2591 2608 3.120095 CGCTGTTGCTGAAATCATGAAGA 60.120 43.478 0.00 0.00 36.97 2.87
2916 2934 5.520748 AGATCTAAAGCCTTTTCAGGGAA 57.479 39.130 0.00 0.00 41.21 3.97
2917 2935 5.964477 TCTAGATCTAAAGCCTTTTCAGGGA 59.036 40.000 3.57 0.00 41.21 4.20
3020 3038 9.225436 GGGTTCATGAATAATCTTCTTCTATCC 57.775 37.037 12.12 1.90 0.00 2.59
3045 3063 5.111989 CAGGTATATCCAACGCATAGATGG 58.888 45.833 0.00 0.00 43.45 3.51
3054 5817 3.056749 GGGTAGAGCAGGTATATCCAACG 60.057 52.174 0.00 0.00 39.02 4.10
3084 5847 4.235731 GGGGTTCCCACTTATGCG 57.764 61.111 10.25 0.00 44.65 4.73
3127 5890 5.135383 AGCACAAACATATGCATCACCTAT 58.865 37.500 0.19 0.00 44.59 2.57
3131 5894 4.627611 AGAGCACAAACATATGCATCAC 57.372 40.909 0.19 0.00 44.59 3.06
3134 5897 6.151648 ACAAAGTAGAGCACAAACATATGCAT 59.848 34.615 3.79 3.79 44.59 3.96
3224 5989 8.846211 CCCTAGAGATCTCGATATATTTTCCTC 58.154 40.741 16.97 0.00 34.09 3.71
3277 6042 9.468532 CACAAAGATGAGATCGTGAATAATCTA 57.531 33.333 0.00 0.00 32.43 1.98
3311 6076 1.841302 TACCAAGGCCAGAGCAGGTG 61.841 60.000 5.01 0.00 42.56 4.00
3339 6104 1.086696 CCCACTTATGCACTTGTCCG 58.913 55.000 0.00 0.00 0.00 4.79
3387 6152 7.441836 AGCATAAACATATACGACATCTCCAA 58.558 34.615 0.00 0.00 0.00 3.53
3396 6161 9.811995 AACAAAGTAGAGCATAAACATATACGA 57.188 29.630 0.00 0.00 0.00 3.43
3437 6202 4.998051 TGATCTAGACCAAAGGCCTTTTT 58.002 39.130 28.42 17.90 0.00 1.94
3448 6213 9.916360 TCTATACTACTTGTTTGATCTAGACCA 57.084 33.333 0.00 0.00 0.00 4.02
3543 6308 8.991026 CAGAGATGAGTTCATGAATAATCTTCC 58.009 37.037 21.65 14.51 36.57 3.46
3573 6338 3.637821 AGGCTGGAATAGGTAGATCCA 57.362 47.619 0.00 0.00 40.84 3.41
3604 6369 2.539476 CACTATGCACATGTCTACGCA 58.461 47.619 10.60 10.60 39.01 5.24
3608 6373 3.118408 GGTTCCCACTATGCACATGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
3609 6374 2.356125 GGTTCCCACTATGCACATGTCT 60.356 50.000 0.00 0.00 0.00 3.41
3634 6399 1.740296 CTTAACGCACCCCACCTCG 60.740 63.158 0.00 0.00 0.00 4.63
3674 6439 3.325870 CCGCACATTCAACTACTTCTCA 58.674 45.455 0.00 0.00 0.00 3.27
3682 6447 0.806868 CTGATGCCGCACATTCAACT 59.193 50.000 0.00 0.00 39.84 3.16
3782 6547 6.073602 GGGCAGTTAAAGAAGCAGAAATTTTG 60.074 38.462 0.00 0.00 0.00 2.44
3786 6551 4.411013 AGGGCAGTTAAAGAAGCAGAAAT 58.589 39.130 0.00 0.00 0.00 2.17
3794 6559 3.822167 CCGGTTTTAGGGCAGTTAAAGAA 59.178 43.478 0.00 0.00 0.00 2.52
3796 6561 3.057806 CACCGGTTTTAGGGCAGTTAAAG 60.058 47.826 2.97 0.00 0.00 1.85
3801 6566 1.602605 GCACCGGTTTTAGGGCAGT 60.603 57.895 2.97 0.00 0.00 4.40
3803 6568 2.282603 GGCACCGGTTTTAGGGCA 60.283 61.111 2.97 0.00 0.00 5.36
3841 6606 3.835378 TGCTCAAATGTGTGTGCTATG 57.165 42.857 0.00 0.00 38.52 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.