Multiple sequence alignment - TraesCS7B01G193600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G193600 chr7B 100.000 9278 0 0 1 9278 332800161 332809438 0.000000e+00 17134.0
1 TraesCS7B01G193600 chr7B 86.826 167 17 4 8824 8987 548034714 548034878 2.060000e-41 182.0
2 TraesCS7B01G193600 chr7B 78.537 205 38 4 2639 2838 749065258 749065055 7.560000e-26 130.0
3 TraesCS7B01G193600 chr7B 94.937 79 3 1 6322 6400 89768699 89768776 1.270000e-23 122.0
4 TraesCS7B01G193600 chr7B 88.710 62 7 0 4032 4093 232741258 232741319 9.990000e-10 76.8
5 TraesCS7B01G193600 chr7A 94.141 4745 197 42 4094 8786 195407031 195402316 0.000000e+00 7147.0
6 TraesCS7B01G193600 chr7A 94.413 1074 32 9 723 1794 195413421 195412374 0.000000e+00 1626.0
7 TraesCS7B01G193600 chr7A 91.063 884 65 8 1973 2845 195411708 195410828 0.000000e+00 1182.0
8 TraesCS7B01G193600 chr7A 87.413 715 54 16 2838 3524 195410802 195410096 0.000000e+00 789.0
9 TraesCS7B01G193600 chr7A 92.262 336 21 5 3590 3923 195410071 195409739 1.090000e-128 472.0
10 TraesCS7B01G193600 chr7A 89.080 348 17 7 8949 9278 195402249 195401905 6.700000e-111 412.0
11 TraesCS7B01G193600 chr7A 89.175 194 9 2 1790 1983 195412297 195412116 2.010000e-56 231.0
12 TraesCS7B01G193600 chr7A 87.006 177 17 5 8817 8987 677696423 677696247 2.640000e-45 195.0
13 TraesCS7B01G193600 chr7A 86.145 166 21 1 3285 3448 97256538 97256373 2.660000e-40 178.0
14 TraesCS7B01G193600 chr7A 94.937 79 3 1 6322 6400 128746733 128746810 1.270000e-23 122.0
15 TraesCS7B01G193600 chr7D 94.588 4287 159 30 4096 8336 188576900 188581159 0.000000e+00 6564.0
16 TraesCS7B01G193600 chr7D 91.713 2136 102 24 723 2838 188570854 188572934 0.000000e+00 2894.0
17 TraesCS7B01G193600 chr7D 86.376 712 48 17 2838 3524 188572966 188573653 0.000000e+00 732.0
18 TraesCS7B01G193600 chr7D 81.214 692 79 20 32 685 188570174 188570852 2.310000e-140 510.0
19 TraesCS7B01G193600 chr7D 90.937 331 28 2 3590 3919 188573678 188574007 2.380000e-120 444.0
20 TraesCS7B01G193600 chr7D 76.480 625 111 19 2835 3426 71963222 71962601 3.250000e-79 307.0
21 TraesCS7B01G193600 chr7D 82.407 324 21 11 8319 8617 188581180 188581492 5.560000e-62 250.0
22 TraesCS7B01G193600 chr7D 82.759 145 18 5 6307 6447 541498458 541498599 1.270000e-23 122.0
23 TraesCS7B01G193600 chr7D 78.481 158 32 2 121 277 426997629 426997473 1.650000e-17 102.0
24 TraesCS7B01G193600 chr7D 87.500 80 8 2 8668 8747 188581477 188581554 3.570000e-14 91.6
25 TraesCS7B01G193600 chr7D 93.750 48 3 0 2844 2891 40235867 40235914 1.290000e-08 73.1
26 TraesCS7B01G193600 chr7D 93.333 45 1 2 2516 2560 3208613 3208571 2.160000e-06 65.8
27 TraesCS7B01G193600 chr3D 80.595 639 86 19 2932 3543 553500727 553500100 8.490000e-125 459.0
28 TraesCS7B01G193600 chr3D 80.282 639 88 19 2932 3543 553539075 553538448 1.840000e-121 448.0
29 TraesCS7B01G193600 chr3D 80.249 643 87 27 2929 3543 553576988 553576358 1.840000e-121 448.0
30 TraesCS7B01G193600 chr3D 85.714 133 14 3 6320 6448 305629580 305629449 1.630000e-27 135.0
31 TraesCS7B01G193600 chr3D 100.000 46 0 0 4048 4093 571148833 571148788 1.660000e-12 86.1
32 TraesCS7B01G193600 chr3D 89.062 64 5 2 4030 4092 179233961 179233899 2.780000e-10 78.7
33 TraesCS7B01G193600 chr1D 74.366 749 146 40 2844 3567 415505979 415506706 2.550000e-70 278.0
34 TraesCS7B01G193600 chr1D 82.609 207 29 6 2968 3170 415677030 415677233 9.580000e-40 176.0
35 TraesCS7B01G193600 chr1D 84.314 153 23 1 137 288 28212539 28212691 2.090000e-31 148.0
36 TraesCS7B01G193600 chr1A 78.654 431 78 11 2844 3263 60802073 60801646 3.300000e-69 274.0
37 TraesCS7B01G193600 chr1A 73.925 744 158 30 2844 3567 513497410 513498137 5.520000e-67 267.0
38 TraesCS7B01G193600 chr1A 97.561 41 0 1 2520 2560 2390713 2390752 1.670000e-07 69.4
39 TraesCS7B01G193600 chr1A 91.667 48 2 2 2512 2559 34973385 34973430 2.160000e-06 65.8
40 TraesCS7B01G193600 chr5A 73.691 764 147 27 2850 3569 658656838 658657591 2.000000e-61 248.0
41 TraesCS7B01G193600 chr5A 84.492 187 23 4 8825 9005 361871691 361871505 7.400000e-41 180.0
42 TraesCS7B01G193600 chr5A 76.176 340 63 15 2512 2841 458212560 458212229 7.450000e-36 163.0
43 TraesCS7B01G193600 chr5A 85.211 142 18 1 2677 2815 108579044 108579185 9.710000e-30 143.0
44 TraesCS7B01G193600 chr5A 78.947 133 22 3 6320 6448 707816632 707816502 1.660000e-12 86.1
45 TraesCS7B01G193600 chr5A 74.257 202 45 6 3036 3233 693686278 693686476 2.780000e-10 78.7
46 TraesCS7B01G193600 chr5A 92.157 51 1 3 2511 2560 44932784 44932736 1.670000e-07 69.4
47 TraesCS7B01G193600 chr6A 73.104 844 168 47 6675 7480 506536841 506536019 7.200000e-61 246.0
48 TraesCS7B01G193600 chr6A 83.962 212 31 3 4748 4958 506538747 506538538 5.680000e-47 200.0
49 TraesCS7B01G193600 chr6A 77.483 302 43 18 5102 5400 506538468 506538189 3.470000e-34 158.0
50 TraesCS7B01G193600 chr6A 82.738 168 23 4 2677 2838 420405502 420405335 2.700000e-30 145.0
51 TraesCS7B01G193600 chr6A 92.982 57 1 3 4040 4095 609673373 609673319 7.720000e-11 80.5
52 TraesCS7B01G193600 chr6A 92.727 55 1 3 4041 4093 77604093 77604040 9.990000e-10 76.8
53 TraesCS7B01G193600 chr6A 92.683 41 2 1 2520 2560 20864602 20864641 3.620000e-04 58.4
54 TraesCS7B01G193600 chr6B 72.899 845 171 43 6675 7480 550318687 550317862 1.200000e-58 239.0
55 TraesCS7B01G193600 chr6B 84.475 219 30 4 4742 4958 550320588 550320372 7.300000e-51 213.0
56 TraesCS7B01G193600 chr6B 77.228 303 49 16 5102 5400 550320312 550320026 9.640000e-35 159.0
57 TraesCS7B01G193600 chr6B 90.909 66 6 0 5012 5077 1021177 1021112 1.280000e-13 89.8
58 TraesCS7B01G193600 chr6D 84.018 219 31 4 4742 4958 365731280 365731064 3.400000e-49 207.0
59 TraesCS7B01G193600 chr6D 77.152 302 51 15 5102 5400 365730997 365730711 9.640000e-35 159.0
60 TraesCS7B01G193600 chr6D 85.235 149 19 1 2651 2796 411720713 411720861 5.800000e-32 150.0
61 TraesCS7B01G193600 chr4A 76.567 367 74 9 5900 6254 468410137 468410503 3.420000e-44 191.0
62 TraesCS7B01G193600 chr4A 74.065 428 90 14 2849 3263 646631085 646631504 1.250000e-33 156.0
63 TraesCS7B01G193600 chr4A 92.727 55 3 1 4040 4093 418061582 418061636 2.780000e-10 78.7
64 TraesCS7B01G193600 chr4A 87.500 64 3 5 4053 4114 713739016 713738956 1.670000e-07 69.4
65 TraesCS7B01G193600 chr4D 87.425 167 18 2 8829 8992 386984668 386984834 1.230000e-43 189.0
66 TraesCS7B01G193600 chr2D 85.870 184 18 7 8823 9001 78903192 78903372 1.230000e-43 189.0
67 TraesCS7B01G193600 chr2D 85.795 176 17 7 8829 8999 351055246 351055418 7.400000e-41 180.0
68 TraesCS7B01G193600 chr2D 83.125 160 21 3 2662 2815 601251016 601250857 3.490000e-29 141.0
69 TraesCS7B01G193600 chr2D 84.746 59 5 4 9117 9175 522526164 522526110 1.000000e-03 56.5
70 TraesCS7B01G193600 chr2A 87.425 167 18 2 8828 8991 324614924 324615090 1.230000e-43 189.0
71 TraesCS7B01G193600 chr2A 87.755 98 9 3 6307 6404 729162462 729162368 2.740000e-20 111.0
72 TraesCS7B01G193600 chr2A 83.929 112 17 1 143 253 739125055 739124944 1.270000e-18 106.0
73 TraesCS7B01G193600 chrUn 86.826 167 17 4 8824 8987 86671481 86671317 2.060000e-41 182.0
74 TraesCS7B01G193600 chr2B 85.465 172 21 3 8827 8996 722081536 722081367 9.580000e-40 176.0
75 TraesCS7B01G193600 chr2B 91.304 69 5 1 5012 5079 782538455 782538387 9.920000e-15 93.5
76 TraesCS7B01G193600 chr2B 89.855 69 6 1 5012 5079 782688911 782688843 4.620000e-13 87.9
77 TraesCS7B01G193600 chr2B 97.826 46 0 1 4048 4093 141202707 141202663 2.780000e-10 78.7
78 TraesCS7B01G193600 chr2B 95.238 42 1 1 2516 2557 153223210 153223170 2.160000e-06 65.8
79 TraesCS7B01G193600 chr3B 79.817 218 43 1 121 337 360015592 360015375 3.470000e-34 158.0
80 TraesCS7B01G193600 chr3B 83.750 80 13 0 142 221 19420651 19420572 9.990000e-10 76.8
81 TraesCS7B01G193600 chr5B 86.986 146 10 5 6307 6446 643301985 643301843 1.250000e-33 156.0
82 TraesCS7B01G193600 chr5B 84.667 150 18 4 2672 2817 548301188 548301040 2.700000e-30 145.0
83 TraesCS7B01G193600 chr5B 86.441 59 8 0 2957 3015 421506751 421506809 2.160000e-06 65.8
84 TraesCS7B01G193600 chr5B 100.000 28 0 0 9148 9175 467021701 467021674 1.700000e-02 52.8
85 TraesCS7B01G193600 chr5D 97.917 48 1 0 4045 4092 72529349 72529396 5.970000e-12 84.2
86 TraesCS7B01G193600 chr3A 85.075 67 6 3 2530 2592 421129857 421129923 2.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G193600 chr7B 332800161 332809438 9277 False 17134.000000 17134 100.000000 1 9278 1 chr7B.!!$F3 9277
1 TraesCS7B01G193600 chr7A 195401905 195413421 11516 True 1694.142857 7147 91.078143 723 9278 7 chr7A.!!$R3 8555
2 TraesCS7B01G193600 chr7D 188570174 188581554 11380 False 1640.800000 6564 87.819286 32 8747 7 chr7D.!!$F3 8715
3 TraesCS7B01G193600 chr7D 71962601 71963222 621 True 307.000000 307 76.480000 2835 3426 1 chr7D.!!$R2 591
4 TraesCS7B01G193600 chr3D 553500100 553500727 627 True 459.000000 459 80.595000 2932 3543 1 chr3D.!!$R3 611
5 TraesCS7B01G193600 chr3D 553538448 553539075 627 True 448.000000 448 80.282000 2932 3543 1 chr3D.!!$R4 611
6 TraesCS7B01G193600 chr3D 553576358 553576988 630 True 448.000000 448 80.249000 2929 3543 1 chr3D.!!$R5 614
7 TraesCS7B01G193600 chr1D 415505979 415506706 727 False 278.000000 278 74.366000 2844 3567 1 chr1D.!!$F2 723
8 TraesCS7B01G193600 chr1A 513497410 513498137 727 False 267.000000 267 73.925000 2844 3567 1 chr1A.!!$F3 723
9 TraesCS7B01G193600 chr5A 658656838 658657591 753 False 248.000000 248 73.691000 2850 3569 1 chr5A.!!$F2 719
10 TraesCS7B01G193600 chr6A 506536019 506538747 2728 True 201.333333 246 78.183000 4748 7480 3 chr6A.!!$R4 2732
11 TraesCS7B01G193600 chr6B 550317862 550320588 2726 True 203.666667 239 78.200667 4742 7480 3 chr6B.!!$R2 2738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 493 0.031857 TGTCGTCGACCGGCTTAAAA 59.968 50.000 22.05 0.0 43.10 1.52 F
651 687 0.034896 GTATCCGCCCCACACATAGG 59.965 60.000 0.00 0.0 0.00 2.57 F
690 726 0.251916 ATCAGCCCGGATCGTTTGAA 59.748 50.000 0.73 0.0 0.00 2.69 F
696 732 0.461339 CCGGATCGTTTGAATCGGGT 60.461 55.000 0.00 0.0 38.94 5.28 F
709 745 0.546598 ATCGGGTTTGGGACAGATCC 59.453 55.000 0.00 0.0 40.79 3.36 F
2249 2797 0.888619 TCTTCAGTGGTAGGCAGTCG 59.111 55.000 0.00 0.0 0.00 4.18 F
2824 3382 0.541764 TGGATCCAAGCAAACACCCC 60.542 55.000 13.46 0.0 0.00 4.95 F
3577 4233 0.040425 CGCCGTGACTTCCAAAAAGG 60.040 55.000 0.00 0.0 39.47 3.11 F
4389 7805 0.031857 TCATTTGCCGTGGTTTGCAG 59.968 50.000 0.00 0.0 38.95 4.41 F
5039 8479 0.843984 AGGCCGGGTGTAATGCTTAT 59.156 50.000 2.18 0.0 0.00 1.73 F
6614 10270 1.311859 TGCTTTGCTTCAGGTCAGTG 58.688 50.000 0.00 0.0 0.00 3.66 F
6928 10719 0.108585 TTCTCAGGTGTCCCAGCAAC 59.891 55.000 0.00 0.0 33.95 4.17 F
7496 11323 3.758554 GGTGAGCACATTGGATTGTTAGT 59.241 43.478 2.75 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 2855 1.090052 AAACCGATAAGCTCGCTGCC 61.090 55.000 0.00 0.00 46.25 4.85 R
2545 3097 2.821366 GTGTGATGCAGAGGCCGG 60.821 66.667 0.00 0.00 40.13 6.13 R
2592 3146 5.473504 GCTTGAGACCTTATTTTGAACCTCA 59.526 40.000 0.00 0.00 0.00 3.86 R
2702 3260 1.700739 ACCTACAACCGGTTTGGATGA 59.299 47.619 27.60 8.13 42.97 2.92 R
2707 3265 3.622166 AGGATACCTACAACCGGTTTG 57.378 47.619 19.55 15.61 38.30 2.93 R
3176 3801 1.572415 ACCGGTCCTATCCTAAGGTCA 59.428 52.381 0.00 0.00 37.91 4.02 R
3860 4517 2.034179 GCAACCAGTAGTTTGTTGGACC 59.966 50.000 10.31 0.00 39.71 4.46 R
5507 8984 0.393077 GCTACTCACCATACCGCCAT 59.607 55.000 0.00 0.00 0.00 4.40 R
5672 9153 2.139118 GAGCTGTGAGTTCACCTGTTC 58.861 52.381 9.60 6.63 45.88 3.18 R
6919 10710 0.394192 CACAGACTGAGTTGCTGGGA 59.606 55.000 10.08 0.00 35.07 4.37 R
7922 11752 0.908198 GTCTTCCATCAGGAGGCTGT 59.092 55.000 0.00 0.00 46.74 4.40 R
8141 11974 1.393539 CGATGTTCTTAACCTGCGTGG 59.606 52.381 0.00 0.00 42.93 4.94 R
8659 12563 1.423584 ATCATGCCACGTATCCCTCA 58.576 50.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.113502 GCAAGGGCAATGATCTATTGTAC 57.886 43.478 14.99 10.42 46.35 2.90
27 28 4.319766 GCAAGGGCAATGATCTATTGTACG 60.320 45.833 14.99 0.00 46.35 3.67
28 29 4.955811 AGGGCAATGATCTATTGTACGA 57.044 40.909 14.99 0.00 46.35 3.43
29 30 5.290493 AGGGCAATGATCTATTGTACGAA 57.710 39.130 14.99 0.00 46.35 3.85
30 31 5.057149 AGGGCAATGATCTATTGTACGAAC 58.943 41.667 14.99 3.03 46.35 3.95
60 61 3.304559 CGTCGGAGATGTTGATGAAGTTC 59.695 47.826 0.00 0.00 40.67 3.01
65 66 0.447801 ATGTTGATGAAGTTCGCGCC 59.552 50.000 0.00 0.00 0.00 6.53
70 71 3.296709 ATGAAGTTCGCGCCGGAGT 62.297 57.895 5.05 0.00 0.00 3.85
94 95 3.756802 CCACGTGGTCATTGGCAA 58.243 55.556 26.95 0.68 0.00 4.52
95 96 2.266070 CCACGTGGTCATTGGCAAT 58.734 52.632 26.95 6.96 0.00 3.56
97 98 0.179192 CACGTGGTCATTGGCAATCG 60.179 55.000 10.36 12.80 0.00 3.34
134 159 4.244802 CTCCTCGTCGAGCTCCGC 62.245 72.222 17.02 0.00 38.37 5.54
140 165 2.959071 GTCGAGCTCCGCATCAGC 60.959 66.667 8.47 0.00 38.37 4.26
153 178 2.515071 ATCAGCCTGGCGGAGGATC 61.515 63.158 24.95 0.00 46.33 3.36
223 248 1.610673 TCCTGCTCTGTCACCTCCC 60.611 63.158 0.00 0.00 0.00 4.30
250 276 1.192146 CCCACCTCGAACTCCTCCAA 61.192 60.000 0.00 0.00 0.00 3.53
253 279 1.276421 CACCTCGAACTCCTCCAATGT 59.724 52.381 0.00 0.00 0.00 2.71
266 292 2.115052 AATGTGTCGGCCAAGGCA 59.885 55.556 13.87 0.00 44.11 4.75
315 341 1.229209 TCACCTTCGGCCTCTTCCT 60.229 57.895 0.00 0.00 0.00 3.36
319 345 1.268283 CCTTCGGCCTCTTCCTCCTT 61.268 60.000 0.00 0.00 0.00 3.36
325 351 0.393673 GCCTCTTCCTCCTTTGGCTC 60.394 60.000 0.00 0.00 37.58 4.70
336 362 3.171828 TTTGGCTCCGCGTCCTTCA 62.172 57.895 4.92 0.00 0.00 3.02
341 367 3.358076 CTCCGCGTCCTTCACCTCC 62.358 68.421 4.92 0.00 0.00 4.30
349 375 0.710588 TCCTTCACCTCCTGCTCCTA 59.289 55.000 0.00 0.00 0.00 2.94
350 376 0.827368 CCTTCACCTCCTGCTCCTAC 59.173 60.000 0.00 0.00 0.00 3.18
358 384 2.496817 CTGCTCCTACGACCAGGC 59.503 66.667 0.00 0.00 35.49 4.85
362 388 3.075005 TCCTACGACCAGGCCTGC 61.075 66.667 28.39 13.87 35.49 4.85
374 400 2.507944 GCCTGCTGTGATCCGGAT 59.492 61.111 19.21 19.21 0.00 4.18
375 401 1.890979 GCCTGCTGTGATCCGGATG 60.891 63.158 24.82 8.58 0.00 3.51
376 402 1.524002 CCTGCTGTGATCCGGATGT 59.476 57.895 24.82 0.00 0.00 3.06
380 407 0.811616 GCTGTGATCCGGATGTGGAC 60.812 60.000 24.82 13.07 41.85 4.02
393 420 3.443681 GGATGTGGACGAATTGGAATGTT 59.556 43.478 0.00 0.00 0.00 2.71
395 422 2.030363 TGTGGACGAATTGGAATGTTGC 60.030 45.455 0.00 0.00 0.00 4.17
396 423 2.030363 GTGGACGAATTGGAATGTTGCA 60.030 45.455 0.00 0.00 0.00 4.08
401 428 0.390209 AATTGGAATGTTGCAGCGGC 60.390 50.000 0.31 0.31 41.68 6.53
402 429 2.546645 ATTGGAATGTTGCAGCGGCG 62.547 55.000 0.51 0.51 45.35 6.46
418 445 4.101448 CGAAGGGCAGGGAGTGGG 62.101 72.222 0.00 0.00 0.00 4.61
420 447 2.121506 AAGGGCAGGGAGTGGGAA 60.122 61.111 0.00 0.00 0.00 3.97
426 453 1.467920 GCAGGGAGTGGGAAGAAATG 58.532 55.000 0.00 0.00 0.00 2.32
429 456 0.999712 GGGAGTGGGAAGAAATGGGA 59.000 55.000 0.00 0.00 0.00 4.37
431 458 2.023984 GGGAGTGGGAAGAAATGGGAAT 60.024 50.000 0.00 0.00 0.00 3.01
432 459 3.026694 GGAGTGGGAAGAAATGGGAATG 58.973 50.000 0.00 0.00 0.00 2.67
440 467 4.273318 GAAGAAATGGGAATGTGCTAGGT 58.727 43.478 0.00 0.00 0.00 3.08
442 469 4.019174 AGAAATGGGAATGTGCTAGGTTG 58.981 43.478 0.00 0.00 0.00 3.77
443 470 2.442236 ATGGGAATGTGCTAGGTTGG 57.558 50.000 0.00 0.00 0.00 3.77
448 476 3.356290 GGAATGTGCTAGGTTGGAATGT 58.644 45.455 0.00 0.00 0.00 2.71
454 482 1.135199 GCTAGGTTGGAATGTCGTCGA 60.135 52.381 0.00 0.00 0.00 4.20
465 493 0.031857 TGTCGTCGACCGGCTTAAAA 59.968 50.000 22.05 0.00 43.10 1.52
484 512 0.108138 AAGCCGGATTTGGTCTCTCG 60.108 55.000 5.05 0.00 0.00 4.04
485 513 0.970937 AGCCGGATTTGGTCTCTCGA 60.971 55.000 5.05 0.00 0.00 4.04
523 551 0.878523 GCTACGTGGCGCCATGAATA 60.879 55.000 46.38 30.60 36.80 1.75
530 558 0.250901 GGCGCCATGAATACCCTCAT 60.251 55.000 24.80 0.00 36.45 2.90
539 567 5.356751 CCATGAATACCCTCATCGAAAAACA 59.643 40.000 0.00 0.00 33.66 2.83
540 568 6.458751 CCATGAATACCCTCATCGAAAAACAG 60.459 42.308 0.00 0.00 33.66 3.16
547 575 2.675348 CTCATCGAAAAACAGAGGAGGC 59.325 50.000 0.00 0.00 40.39 4.70
548 576 2.038426 TCATCGAAAAACAGAGGAGGCA 59.962 45.455 0.00 0.00 0.00 4.75
549 577 1.878953 TCGAAAAACAGAGGAGGCAC 58.121 50.000 0.00 0.00 0.00 5.01
552 580 0.537371 AAAAACAGAGGAGGCACCCG 60.537 55.000 0.00 0.00 40.05 5.28
553 581 1.705997 AAAACAGAGGAGGCACCCGT 61.706 55.000 0.00 0.00 40.05 5.28
554 582 2.113243 AAACAGAGGAGGCACCCGTC 62.113 60.000 0.00 0.00 40.05 4.79
555 583 4.135153 CAGAGGAGGCACCCGTCG 62.135 72.222 0.00 0.00 40.05 5.12
556 584 4.680537 AGAGGAGGCACCCGTCGT 62.681 66.667 0.00 0.00 40.05 4.34
557 585 2.753043 GAGGAGGCACCCGTCGTA 60.753 66.667 0.00 0.00 40.05 3.43
558 586 3.061260 GAGGAGGCACCCGTCGTAC 62.061 68.421 0.00 0.00 40.05 3.67
559 587 3.066814 GGAGGCACCCGTCGTACT 61.067 66.667 0.00 0.00 0.00 2.73
560 588 2.181021 GAGGCACCCGTCGTACTG 59.819 66.667 0.00 0.00 0.00 2.74
561 589 2.282674 AGGCACCCGTCGTACTGA 60.283 61.111 0.00 0.00 0.00 3.41
562 590 1.664321 GAGGCACCCGTCGTACTGAT 61.664 60.000 0.00 0.00 0.00 2.90
580 608 3.750371 TGATGGATCTCCGTGTGTTTTT 58.250 40.909 0.00 0.00 39.43 1.94
582 610 1.606668 TGGATCTCCGTGTGTTTTTGC 59.393 47.619 0.00 0.00 39.43 3.68
585 613 2.772568 TCTCCGTGTGTTTTTGCATG 57.227 45.000 0.00 0.00 0.00 4.06
586 614 1.336440 TCTCCGTGTGTTTTTGCATGG 59.664 47.619 0.00 0.00 41.76 3.66
587 615 0.387202 TCCGTGTGTTTTTGCATGGG 59.613 50.000 0.00 0.00 41.00 4.00
588 616 0.599728 CCGTGTGTTTTTGCATGGGG 60.600 55.000 0.00 0.00 37.94 4.96
589 617 1.220817 CGTGTGTTTTTGCATGGGGC 61.221 55.000 0.00 0.00 45.13 5.80
590 618 0.884259 GTGTGTTTTTGCATGGGGCC 60.884 55.000 0.00 0.00 43.89 5.80
591 619 1.302431 GTGTTTTTGCATGGGGCCC 60.302 57.895 18.17 18.17 43.89 5.80
593 621 0.178921 TGTTTTTGCATGGGGCCCTA 60.179 50.000 25.93 18.54 43.89 3.53
594 622 1.203237 GTTTTTGCATGGGGCCCTAT 58.797 50.000 25.93 20.41 43.89 2.57
595 623 1.134431 GTTTTTGCATGGGGCCCTATG 60.134 52.381 37.19 37.19 43.89 2.23
632 668 1.121240 GATGCGTCCGAATGTCTACG 58.879 55.000 0.00 0.00 38.34 3.51
638 674 2.661169 CGTCCGAATGTCTACGTATCCG 60.661 54.545 0.00 0.00 40.83 4.18
642 678 0.677842 AATGTCTACGTATCCGCCCC 59.322 55.000 0.00 0.00 37.70 5.80
643 679 0.468585 ATGTCTACGTATCCGCCCCA 60.469 55.000 0.00 0.00 37.70 4.96
644 680 1.361632 GTCTACGTATCCGCCCCAC 59.638 63.158 0.00 0.00 37.70 4.61
645 681 1.076850 TCTACGTATCCGCCCCACA 60.077 57.895 0.00 0.00 37.70 4.17
646 682 1.066918 CTACGTATCCGCCCCACAC 59.933 63.158 0.00 0.00 37.70 3.82
647 683 1.669049 CTACGTATCCGCCCCACACA 61.669 60.000 0.00 0.00 37.70 3.72
648 684 1.044231 TACGTATCCGCCCCACACAT 61.044 55.000 0.00 0.00 37.70 3.21
649 685 1.044231 ACGTATCCGCCCCACACATA 61.044 55.000 0.00 0.00 37.70 2.29
650 686 0.319555 CGTATCCGCCCCACACATAG 60.320 60.000 0.00 0.00 0.00 2.23
651 687 0.034896 GTATCCGCCCCACACATAGG 59.965 60.000 0.00 0.00 0.00 2.57
652 688 1.764571 TATCCGCCCCACACATAGGC 61.765 60.000 0.00 0.00 43.53 3.93
685 721 2.574955 GCCTATCAGCCCGGATCGT 61.575 63.158 0.73 0.00 0.00 3.73
686 722 2.050269 CCTATCAGCCCGGATCGTT 58.950 57.895 0.73 0.00 0.00 3.85
687 723 0.393077 CCTATCAGCCCGGATCGTTT 59.607 55.000 0.73 0.00 0.00 3.60
688 724 1.502231 CTATCAGCCCGGATCGTTTG 58.498 55.000 0.73 0.00 0.00 2.93
689 725 1.068588 CTATCAGCCCGGATCGTTTGA 59.931 52.381 0.73 0.00 0.00 2.69
690 726 0.251916 ATCAGCCCGGATCGTTTGAA 59.748 50.000 0.73 0.00 0.00 2.69
691 727 0.251916 TCAGCCCGGATCGTTTGAAT 59.748 50.000 0.73 0.00 0.00 2.57
692 728 0.657840 CAGCCCGGATCGTTTGAATC 59.342 55.000 0.73 0.00 0.00 2.52
693 729 0.810031 AGCCCGGATCGTTTGAATCG 60.810 55.000 0.73 0.00 0.00 3.34
694 730 1.772063 GCCCGGATCGTTTGAATCGG 61.772 60.000 0.73 0.00 40.88 4.18
695 731 2.307363 CCGGATCGTTTGAATCGGG 58.693 57.895 0.00 0.00 38.94 5.14
696 732 0.461339 CCGGATCGTTTGAATCGGGT 60.461 55.000 0.00 0.00 38.94 5.28
697 733 1.365699 CGGATCGTTTGAATCGGGTT 58.634 50.000 0.00 0.00 0.00 4.11
698 734 1.735571 CGGATCGTTTGAATCGGGTTT 59.264 47.619 0.00 0.00 0.00 3.27
699 735 2.475519 CGGATCGTTTGAATCGGGTTTG 60.476 50.000 0.00 0.00 0.00 2.93
700 736 2.159435 GGATCGTTTGAATCGGGTTTGG 60.159 50.000 0.00 0.00 0.00 3.28
701 737 1.240256 TCGTTTGAATCGGGTTTGGG 58.760 50.000 0.00 0.00 0.00 4.12
702 738 1.202782 TCGTTTGAATCGGGTTTGGGA 60.203 47.619 0.00 0.00 0.00 4.37
703 739 1.068816 CGTTTGAATCGGGTTTGGGAC 60.069 52.381 0.00 0.00 0.00 4.46
704 740 1.957877 GTTTGAATCGGGTTTGGGACA 59.042 47.619 0.00 0.00 0.00 4.02
705 741 1.904287 TTGAATCGGGTTTGGGACAG 58.096 50.000 0.00 0.00 42.39 3.51
706 742 1.060729 TGAATCGGGTTTGGGACAGA 58.939 50.000 0.00 0.00 42.39 3.41
707 743 1.633432 TGAATCGGGTTTGGGACAGAT 59.367 47.619 0.00 0.00 42.39 2.90
708 744 2.289565 GAATCGGGTTTGGGACAGATC 58.710 52.381 0.00 0.00 42.39 2.75
709 745 0.546598 ATCGGGTTTGGGACAGATCC 59.453 55.000 0.00 0.00 40.79 3.36
717 753 2.111878 GGACAGATCCGGGGCATG 59.888 66.667 0.00 0.00 34.48 4.06
718 754 2.111878 GACAGATCCGGGGCATGG 59.888 66.667 0.00 0.00 0.00 3.66
719 755 3.482232 GACAGATCCGGGGCATGGG 62.482 68.421 0.00 0.00 0.00 4.00
720 756 4.275508 CAGATCCGGGGCATGGGG 62.276 72.222 0.00 0.00 0.00 4.96
850 886 2.158415 TCCGTCTCCCTCGGGTATAAAT 60.158 50.000 1.18 0.00 46.82 1.40
992 1033 2.203422 CGAGAGGAGAGGCCCGAT 60.203 66.667 0.00 0.00 37.37 4.18
1028 1069 1.743321 GAGATGTCGCCCCTCCAGAG 61.743 65.000 0.00 0.00 0.00 3.35
1153 1194 3.528370 CGCCGATCCCTCGTTCCT 61.528 66.667 0.00 0.00 43.49 3.36
1193 1234 1.006805 CCCACAGGATCGATCTCGC 60.007 63.158 23.96 8.59 35.42 5.03
1219 1261 1.338136 CCTGGGGAGTGCGGTTATCT 61.338 60.000 0.00 0.00 0.00 1.98
1252 1294 2.032071 CTTCGCTTTCGGGTGGGT 59.968 61.111 0.00 0.00 36.13 4.51
1253 1295 2.031465 TTCGCTTTCGGGTGGGTC 59.969 61.111 0.00 0.00 36.13 4.46
1254 1296 2.725203 CTTCGCTTTCGGGTGGGTCA 62.725 60.000 0.00 0.00 36.13 4.02
1255 1297 2.999739 TTCGCTTTCGGGTGGGTCAC 63.000 60.000 0.00 0.00 36.13 3.67
1256 1298 3.047877 GCTTTCGGGTGGGTCACG 61.048 66.667 0.00 0.00 45.33 4.35
1257 1299 3.047877 CTTTCGGGTGGGTCACGC 61.048 66.667 5.23 5.23 43.41 5.34
1258 1300 3.530910 CTTTCGGGTGGGTCACGCT 62.531 63.158 12.08 0.00 43.61 5.07
1259 1301 3.818121 TTTCGGGTGGGTCACGCTG 62.818 63.158 12.08 6.95 43.61 5.18
1408 1450 1.200252 CTAATCGCCGATCACCGATCT 59.800 52.381 15.25 9.78 42.74 2.75
1416 1458 3.119316 GCCGATCACCGATCTAATCATCT 60.119 47.826 2.74 0.00 41.76 2.90
1739 1782 7.687941 AATCTTGTAGGTATGTTCAGTTTGG 57.312 36.000 0.00 0.00 0.00 3.28
1851 1978 7.974504 ACTTTCGAGTATCCCAACCAATATAT 58.025 34.615 0.00 0.00 0.00 0.86
1866 1993 7.601073 ACCAATATATTGTACATGAGATGCG 57.399 36.000 21.20 6.39 36.06 4.73
1919 2046 7.279981 TGCGAATTATAGATGTGCTACTTTGTT 59.720 33.333 0.00 0.00 0.00 2.83
2020 2565 2.729882 GCCGTCACTGTTGTAGTACTTG 59.270 50.000 0.00 0.00 37.60 3.16
2040 2587 3.433343 TGAGAAGGGGTACGACATACAA 58.567 45.455 0.00 0.00 35.23 2.41
2041 2588 3.833650 TGAGAAGGGGTACGACATACAAA 59.166 43.478 0.00 0.00 35.23 2.83
2069 2616 5.618561 CGTAATCAAGCCAAACAGTAGTTC 58.381 41.667 0.00 0.00 36.84 3.01
2082 2629 6.830114 AACAGTAGTTCGCTAATCTAATGC 57.170 37.500 0.00 0.00 34.51 3.56
2085 2632 5.980116 CAGTAGTTCGCTAATCTAATGCTGT 59.020 40.000 0.00 0.00 0.00 4.40
2110 2657 9.091220 GTAAGTTGTAACTCTATAGGATGGGAT 57.909 37.037 0.00 0.00 38.57 3.85
2130 2677 8.657387 TGGGATTGAAACCATAAATTACTTCA 57.343 30.769 0.00 0.00 0.00 3.02
2249 2797 0.888619 TCTTCAGTGGTAGGCAGTCG 59.111 55.000 0.00 0.00 0.00 4.18
2307 2855 6.949352 ATGCTATAAATTCTCACAACCCAG 57.051 37.500 0.00 0.00 0.00 4.45
2343 2891 4.069304 CGGTTTTCTTGGTGAGTGGATTA 58.931 43.478 0.00 0.00 0.00 1.75
2502 3050 9.558396 TCAAAACAGATTTTTAAAATGCAGGAT 57.442 25.926 7.72 0.00 35.79 3.24
2503 3051 9.815936 CAAAACAGATTTTTAAAATGCAGGATC 57.184 29.630 7.72 1.09 35.79 3.36
2545 3097 7.180229 TTTTTCTTGAAAAAGGAGGATATCCCC 59.820 37.037 18.56 17.83 39.40 4.81
2573 3127 0.937304 GCATCACACGACACACAACT 59.063 50.000 0.00 0.00 0.00 3.16
2580 3134 7.518161 CATCACACGACACACAACTATTTTAT 58.482 34.615 0.00 0.00 0.00 1.40
2702 3260 5.888982 AAACATCTATCCTATTGGACCGT 57.111 39.130 0.00 0.00 46.51 4.83
2707 3265 4.087182 TCTATCCTATTGGACCGTCATCC 58.913 47.826 0.00 0.00 46.51 3.51
2727 3285 2.237893 CCAAACCGGTTGTAGGTATCCT 59.762 50.000 23.08 0.00 41.95 3.24
2728 3286 3.451902 CCAAACCGGTTGTAGGTATCCTA 59.548 47.826 23.08 0.00 41.95 2.94
2740 3298 4.868314 AGGTATCCTATGCTACCGTTTC 57.132 45.455 0.00 0.00 41.89 2.78
2743 3301 1.868713 TCCTATGCTACCGTTTCCCA 58.131 50.000 0.00 0.00 0.00 4.37
2744 3302 2.189676 TCCTATGCTACCGTTTCCCAA 58.810 47.619 0.00 0.00 0.00 4.12
2776 3334 5.221803 ACCCAATATCCATAAGCTCTCTGTG 60.222 44.000 0.00 0.00 0.00 3.66
2780 3338 7.310547 CCAATATCCATAAGCTCTCTGTGATCT 60.311 40.741 0.00 0.00 0.00 2.75
2786 3344 2.108970 AGCTCTCTGTGATCTGCATGA 58.891 47.619 0.00 0.00 0.00 3.07
2788 3346 2.159071 GCTCTCTGTGATCTGCATGACT 60.159 50.000 0.00 0.00 0.00 3.41
2801 3359 2.233676 TGCATGACTGAGTAACGACCAT 59.766 45.455 0.00 0.00 0.00 3.55
2805 3363 5.592054 CATGACTGAGTAACGACCATGTAT 58.408 41.667 0.00 0.00 0.00 2.29
2806 3364 4.993905 TGACTGAGTAACGACCATGTATG 58.006 43.478 0.00 0.00 0.00 2.39
2824 3382 0.541764 TGGATCCAAGCAAACACCCC 60.542 55.000 13.46 0.00 0.00 4.95
2827 3385 1.901833 GATCCAAGCAAACACCCCAAT 59.098 47.619 0.00 0.00 0.00 3.16
2841 3431 1.624813 CCCCAATTGACCTGCAACATT 59.375 47.619 7.12 0.00 39.78 2.71
2880 3470 1.067635 GGCCCAAAGTAATGCACACAG 60.068 52.381 0.00 0.00 0.00 3.66
2893 3490 1.169577 CACACAGTCCTACTCGAGCT 58.830 55.000 13.61 2.35 0.00 4.09
2958 3569 3.256704 TGGATAAAGTGTTGGGAGGACT 58.743 45.455 0.00 0.00 0.00 3.85
2979 3590 4.992951 ACTAACGTTAAAGGACACATGGAC 59.007 41.667 9.68 0.00 0.00 4.02
2980 3591 2.774687 ACGTTAAAGGACACATGGACC 58.225 47.619 0.00 0.00 0.00 4.46
2983 3594 2.465860 TAAAGGACACATGGACCGTG 57.534 50.000 12.41 12.41 40.32 4.94
3015 3626 4.098914 ACTTGGCTAGTGGACATTTGAA 57.901 40.909 0.00 0.00 35.19 2.69
3021 3632 4.518970 GGCTAGTGGACATTTGAAGAACAA 59.481 41.667 0.00 0.00 36.65 2.83
3072 3688 8.968969 ACAAAAACAACAACATTTACTACCCTA 58.031 29.630 0.00 0.00 0.00 3.53
3176 3801 6.682861 GCACCTTAACTTTCCAAATGTGAAGT 60.683 38.462 0.00 0.00 34.03 3.01
3183 3808 6.126409 ACTTTCCAAATGTGAAGTGACCTTA 58.874 36.000 0.00 0.00 31.59 2.69
3427 4081 4.401519 AGACGAATACTGCAAGGCTAGTAA 59.598 41.667 0.06 0.00 39.30 2.24
3438 4092 0.177373 GGCTAGTAACTTGTCCCCGG 59.823 60.000 0.00 0.00 0.00 5.73
3448 4102 2.122725 GTCCCCGGGCCAGGTATA 60.123 66.667 21.37 2.46 0.00 1.47
3457 4111 2.062636 GGGCCAGGTATATTCCCAGAA 58.937 52.381 4.39 0.00 36.96 3.02
3458 4112 2.445525 GGGCCAGGTATATTCCCAGAAA 59.554 50.000 4.39 0.00 36.96 2.52
3459 4113 3.076032 GGGCCAGGTATATTCCCAGAAAT 59.924 47.826 4.39 0.00 36.96 2.17
3515 4171 2.171448 TCCTATTGAAGAAGGCTGCCTC 59.829 50.000 23.61 15.17 30.89 4.70
3524 4180 0.767375 AAGGCTGCCTCTGTCTTCAA 59.233 50.000 23.61 0.00 30.89 2.69
3528 4184 1.534595 GCTGCCTCTGTCTTCAACAAG 59.465 52.381 0.00 0.00 37.45 3.16
3546 4202 5.061721 ACAAGCCCTTCTAAAAAGGAGAA 57.938 39.130 5.39 0.00 39.81 2.87
3548 4204 5.712446 ACAAGCCCTTCTAAAAAGGAGAATC 59.288 40.000 5.39 0.00 39.81 2.52
3553 4209 6.476378 CCCTTCTAAAAAGGAGAATCAGTCA 58.524 40.000 5.39 0.00 39.81 3.41
3569 4225 3.782244 CAGCTGCGCCGTGACTTC 61.782 66.667 4.18 0.00 0.00 3.01
3572 4228 2.664851 CTGCGCCGTGACTTCCAA 60.665 61.111 4.18 0.00 0.00 3.53
3573 4229 2.203084 TGCGCCGTGACTTCCAAA 60.203 55.556 4.18 0.00 0.00 3.28
3574 4230 1.781025 CTGCGCCGTGACTTCCAAAA 61.781 55.000 4.18 0.00 0.00 2.44
3575 4231 1.357334 GCGCCGTGACTTCCAAAAA 59.643 52.632 0.00 0.00 0.00 1.94
3576 4232 0.660300 GCGCCGTGACTTCCAAAAAG 60.660 55.000 0.00 0.00 0.00 2.27
3577 4233 0.040425 CGCCGTGACTTCCAAAAAGG 60.040 55.000 0.00 0.00 39.47 3.11
3620 4276 9.244799 GAACGAATGAAAAACATAAGGAAAGTT 57.755 29.630 0.00 0.00 38.38 2.66
3622 4278 9.030301 ACGAATGAAAAACATAAGGAAAGTTTG 57.970 29.630 0.00 0.00 38.38 2.93
3636 4292 5.036737 GGAAAGTTTGTCAATCATATGCGG 58.963 41.667 0.00 0.00 0.00 5.69
3664 4320 6.748132 AGTGGAAAAAGGATGTTGTACAATG 58.252 36.000 12.26 0.00 0.00 2.82
3719 4375 9.975218 ATAGTAGATCAACCCTTGTTAATTTGT 57.025 29.630 0.00 0.00 32.09 2.83
3745 4401 5.185249 AGCATCATTCCTATGATCCAAATGC 59.815 40.000 0.00 0.00 46.19 3.56
3746 4402 5.185249 GCATCATTCCTATGATCCAAATGCT 59.815 40.000 0.00 0.00 46.19 3.79
3774 4431 9.973661 TTCATAGGTCAATTTCTTAAGGATTCA 57.026 29.630 1.85 0.00 0.00 2.57
3781 4438 9.912634 GTCAATTTCTTAAGGATTCAAATCACA 57.087 29.630 1.85 0.00 37.15 3.58
3796 4453 2.357327 TCACACAATAACCCGACGAG 57.643 50.000 0.00 0.00 0.00 4.18
3845 4502 9.817809 TGAGATTCTGCGACTAATTTATACTTT 57.182 29.630 0.00 0.00 0.00 2.66
3884 4541 4.020543 TCCAACAAACTACTGGTTGCTTT 58.979 39.130 0.00 0.00 40.32 3.51
3890 4547 1.421646 ACTACTGGTTGCTTTGCCTCT 59.578 47.619 0.00 0.00 0.00 3.69
3900 4557 4.045636 TGCTTTGCCTCTTTTCAAGTTC 57.954 40.909 0.00 0.00 0.00 3.01
3947 7308 9.941325 ACATTGGTATAAAATTTGAATCTGCAA 57.059 25.926 0.00 0.00 0.00 4.08
3960 7321 8.489990 TTTGAATCTGCAAATTTTTGTCAAGA 57.510 26.923 5.05 6.37 40.24 3.02
3964 7325 8.579682 AATCTGCAAATTTTTGTCAAGAGTAC 57.420 30.769 5.05 0.00 40.24 2.73
3967 7328 8.196771 TCTGCAAATTTTTGTCAAGAGTACATT 58.803 29.630 5.05 0.00 40.24 2.71
3968 7329 8.351495 TGCAAATTTTTGTCAAGAGTACATTC 57.649 30.769 5.05 0.00 40.24 2.67
3969 7330 7.978414 TGCAAATTTTTGTCAAGAGTACATTCA 59.022 29.630 5.05 0.00 40.24 2.57
3971 7332 8.755018 CAAATTTTTGTCAAGAGTACATTCACC 58.245 33.333 0.00 0.00 33.59 4.02
3972 7333 7.823745 ATTTTTGTCAAGAGTACATTCACCT 57.176 32.000 0.00 0.00 0.00 4.00
3973 7334 6.618287 TTTTGTCAAGAGTACATTCACCTG 57.382 37.500 0.00 0.00 0.00 4.00
3974 7335 4.955811 TGTCAAGAGTACATTCACCTGT 57.044 40.909 0.00 0.00 0.00 4.00
3975 7336 4.631131 TGTCAAGAGTACATTCACCTGTG 58.369 43.478 0.00 0.00 0.00 3.66
3976 7337 4.100963 TGTCAAGAGTACATTCACCTGTGT 59.899 41.667 0.00 0.00 0.00 3.72
3977 7338 5.057149 GTCAAGAGTACATTCACCTGTGTT 58.943 41.667 0.00 0.00 0.00 3.32
3978 7339 5.527582 GTCAAGAGTACATTCACCTGTGTTT 59.472 40.000 0.00 0.00 0.00 2.83
3979 7340 6.038271 GTCAAGAGTACATTCACCTGTGTTTT 59.962 38.462 0.00 0.00 0.00 2.43
3980 7341 6.038161 TCAAGAGTACATTCACCTGTGTTTTG 59.962 38.462 0.00 0.00 0.00 2.44
3981 7342 5.437060 AGAGTACATTCACCTGTGTTTTGT 58.563 37.500 0.00 3.22 0.00 2.83
3982 7343 6.588204 AGAGTACATTCACCTGTGTTTTGTA 58.412 36.000 0.00 2.38 0.00 2.41
3983 7344 7.051623 AGAGTACATTCACCTGTGTTTTGTAA 58.948 34.615 0.00 0.00 0.00 2.41
3984 7345 7.554835 AGAGTACATTCACCTGTGTTTTGTAAA 59.445 33.333 0.00 0.00 0.00 2.01
3985 7346 7.703328 AGTACATTCACCTGTGTTTTGTAAAG 58.297 34.615 0.00 0.00 0.00 1.85
3986 7347 6.767524 ACATTCACCTGTGTTTTGTAAAGA 57.232 33.333 0.00 0.00 0.00 2.52
3987 7348 6.560711 ACATTCACCTGTGTTTTGTAAAGAC 58.439 36.000 0.00 0.00 0.00 3.01
4063 7424 6.526566 GTAGCATACAGATACCGAAAAAGG 57.473 41.667 0.00 0.00 42.43 3.11
4065 7426 3.877508 GCATACAGATACCGAAAAAGGCT 59.122 43.478 0.00 0.00 33.69 4.58
4066 7427 4.335594 GCATACAGATACCGAAAAAGGCTT 59.664 41.667 0.00 0.00 33.69 4.35
4067 7428 5.163652 GCATACAGATACCGAAAAAGGCTTT 60.164 40.000 6.68 6.68 33.69 3.51
4068 7429 6.487103 CATACAGATACCGAAAAAGGCTTTC 58.513 40.000 13.76 0.41 33.69 2.62
4070 7431 2.418976 AGATACCGAAAAAGGCTTTCGC 59.581 45.455 13.76 7.41 46.89 4.70
4081 7442 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
4082 7443 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
4084 7445 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
4086 7447 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
4087 7448 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
4124 7521 4.747108 ACAGATAGATACACATTTCAGCGC 59.253 41.667 0.00 0.00 0.00 5.92
4145 7542 4.675114 CGCAATTTACAAGTTCACACTTCC 59.325 41.667 0.00 0.00 41.69 3.46
4206 7605 6.515272 TTTATTCTCTGACTTCAAATGGGC 57.485 37.500 0.00 0.00 0.00 5.36
4245 7644 3.709987 GCAAAATGCACACTCAGAAACT 58.290 40.909 0.00 0.00 44.26 2.66
4261 7661 9.025041 ACTCAGAAACTAAAAATCAATTAGGGG 57.975 33.333 0.00 0.00 35.20 4.79
4305 7705 5.144159 TCTAGGATTCTACATGGTCCTGT 57.856 43.478 12.98 0.00 41.08 4.00
4312 7712 6.183360 GGATTCTACATGGTCCTGTTTGATTG 60.183 42.308 0.00 0.00 0.00 2.67
4346 7762 7.507616 TGTTTATCACAAGTATTTTCCCAACCT 59.492 33.333 0.00 0.00 29.87 3.50
4354 7770 6.753107 AGTATTTTCCCAACCTATTTCACG 57.247 37.500 0.00 0.00 0.00 4.35
4389 7805 0.031857 TCATTTGCCGTGGTTTGCAG 59.968 50.000 0.00 0.00 38.95 4.41
4509 7925 6.653740 AGGACCTATTTAACTGCACTTTACAC 59.346 38.462 0.00 0.00 0.00 2.90
4616 8032 3.021451 GCTAAACAGTGCCAGGTGT 57.979 52.632 0.00 0.00 0.00 4.16
4622 8038 1.128200 ACAGTGCCAGGTGTCACTAA 58.872 50.000 2.35 0.00 41.19 2.24
4628 8044 5.415701 CAGTGCCAGGTGTCACTAATAAATT 59.584 40.000 2.35 0.00 41.19 1.82
4638 8054 9.921637 GGTGTCACTAATAAATTTTTGGAATGA 57.078 29.630 2.35 0.00 0.00 2.57
4656 8090 5.357742 AATGAAAACTTTTTGTCCCTGCT 57.642 34.783 0.00 0.00 0.00 4.24
4658 8092 5.159273 TGAAAACTTTTTGTCCCTGCTTT 57.841 34.783 0.00 0.00 0.00 3.51
4659 8093 5.175127 TGAAAACTTTTTGTCCCTGCTTTC 58.825 37.500 0.00 0.00 0.00 2.62
4662 8096 3.096092 ACTTTTTGTCCCTGCTTTCACA 58.904 40.909 0.00 0.00 0.00 3.58
4807 8241 5.835257 TGCTCAGAAAACTTTGGAAATCAG 58.165 37.500 0.00 0.00 0.00 2.90
4880 8314 1.839424 GAACCAGGGACCAAATCAGG 58.161 55.000 0.00 0.00 0.00 3.86
5039 8479 0.843984 AGGCCGGGTGTAATGCTTAT 59.156 50.000 2.18 0.00 0.00 1.73
5040 8480 2.038033 GAGGCCGGGTGTAATGCTTATA 59.962 50.000 2.18 0.00 0.00 0.98
5179 8619 5.036737 ACTTTTGCTGAGTCAAAATGTTCG 58.963 37.500 12.65 6.20 42.77 3.95
5453 8930 4.096382 CACCCTTCATTTAGCATGTGGTAC 59.904 45.833 0.00 0.00 0.00 3.34
5507 8984 7.442969 CCGCCTATTACATTTTATTGACCTGTA 59.557 37.037 0.00 0.00 0.00 2.74
5557 9034 6.088016 AGCATCTCATTCTCACTACTCATC 57.912 41.667 0.00 0.00 0.00 2.92
5570 9047 7.014134 TCTCACTACTCATCTTTGATCATCCTC 59.986 40.741 0.00 0.00 0.00 3.71
5672 9153 6.260050 ACGGTAACATGGATTGCTACTTATTG 59.740 38.462 0.00 0.00 29.44 1.90
5738 9219 4.887748 TCTTTCTGCTGAGAAGGTAACAG 58.112 43.478 12.22 0.00 39.44 3.16
5755 9236 6.158695 AGGTAACAGATAATGGATGGTCAACT 59.841 38.462 0.00 0.00 41.41 3.16
5765 9246 3.009033 TGGATGGTCAACTTCCACCTTAG 59.991 47.826 0.00 0.00 45.52 2.18
5869 9463 3.121544 GTGCTACCGGCTTATTACTCAC 58.878 50.000 0.00 0.00 42.39 3.51
5873 9467 4.270325 GCTACCGGCTTATTACTCACAAAG 59.730 45.833 0.00 0.00 38.06 2.77
5877 9489 4.454504 CCGGCTTATTACTCACAAAGTTGT 59.545 41.667 0.00 0.00 43.36 3.32
6112 9752 8.977505 TGCTACTTTTATTTTGAATTGACTTGC 58.022 29.630 0.00 0.00 0.00 4.01
6207 9858 4.737765 GCTGCGTCAAAACTTACAATTTCA 59.262 37.500 0.00 0.00 0.00 2.69
6262 9913 1.546029 CAAGGGCTGAAAAAGGTAGGC 59.454 52.381 0.00 0.00 36.39 3.93
6270 9921 6.003950 GGCTGAAAAAGGTAGGCATCATATA 58.996 40.000 0.00 0.00 37.02 0.86
6614 10270 1.311859 TGCTTTGCTTCAGGTCAGTG 58.688 50.000 0.00 0.00 0.00 3.66
6713 10498 5.163652 GGCTACATGATAAAGGTGTTTCCAC 60.164 44.000 0.00 0.00 41.06 4.02
6928 10719 0.108585 TTCTCAGGTGTCCCAGCAAC 59.891 55.000 0.00 0.00 33.95 4.17
7125 10950 6.631962 ACCTATGAGTTACTAGTTCACTTGC 58.368 40.000 0.00 0.00 0.00 4.01
7160 10985 7.066887 CACCACCTTTATCAGTGCATATTGTTA 59.933 37.037 0.00 0.00 32.48 2.41
7276 11101 5.912396 GTCAAACTTTGATTGTGATTACGCA 59.088 36.000 7.47 0.00 42.47 5.24
7496 11323 3.758554 GGTGAGCACATTGGATTGTTAGT 59.241 43.478 2.75 0.00 0.00 2.24
7560 11390 8.267183 ACATGATCCATCTCACACAAGTTTATA 58.733 33.333 0.00 0.00 0.00 0.98
7761 11591 9.686683 AATTAAGTGCCATCTTTTACTCACTAT 57.313 29.630 0.00 0.00 34.14 2.12
7770 11600 7.492669 CCATCTTTTACTCACTATTCATCGTGT 59.507 37.037 0.00 0.00 33.07 4.49
7771 11601 8.873830 CATCTTTTACTCACTATTCATCGTGTT 58.126 33.333 0.00 0.00 33.07 3.32
7772 11602 8.462143 TCTTTTACTCACTATTCATCGTGTTC 57.538 34.615 0.00 0.00 33.07 3.18
7824 11654 6.331369 GGAAATTCTCCATTGTTTCACTGA 57.669 37.500 0.00 0.00 44.67 3.41
7861 11691 7.387397 ACACCGTATAAAAGGATAAAACGACAA 59.613 33.333 0.00 0.00 0.00 3.18
7871 11701 4.201561 GGATAAAACGACAAGTGCTCGTAC 60.202 45.833 0.00 0.00 43.49 3.67
7881 11711 4.202182 ACAAGTGCTCGTACTTACCAAAGA 60.202 41.667 0.13 0.00 38.78 2.52
7888 11718 5.220172 GCTCGTACTTACCAAAGAAATCGTC 60.220 44.000 0.00 0.00 36.50 4.20
8075 11905 5.103473 AGGAGTATCTGGAGAAGGTACATCA 60.103 44.000 0.00 0.00 43.94 3.07
8140 11973 2.027024 CATGATGCATGCCACGCC 59.973 61.111 16.68 0.06 35.02 5.68
8141 11974 3.221389 ATGATGCATGCCACGCCC 61.221 61.111 16.68 0.00 0.00 6.13
8163 11996 2.092211 CACGCAGGTTAAGAACATCGTC 59.908 50.000 0.00 0.00 30.82 4.20
8365 12236 2.696526 ACCGGGATCTTGATAGGCTA 57.303 50.000 6.32 0.00 0.00 3.93
8482 12366 6.781138 TGGCAGAAATCAACGTCAATATAAC 58.219 36.000 0.00 0.00 0.00 1.89
8515 12400 6.985059 AGTTAGAAGCTCCGGATAATAACAAC 59.015 38.462 3.57 4.74 0.00 3.32
8675 12579 2.799126 TTTTGAGGGATACGTGGCAT 57.201 45.000 0.00 0.00 37.60 4.40
8676 12580 2.036958 TTTGAGGGATACGTGGCATG 57.963 50.000 4.87 4.87 37.60 4.06
8693 12597 3.111098 GCATGATAGCAAAGCCGAAAAG 58.889 45.455 0.00 0.00 0.00 2.27
8789 12693 9.500785 AAATCAACCTTTCAAGTTTCAGAAAAA 57.499 25.926 0.00 0.00 33.75 1.94
8791 12695 8.702163 TCAACCTTTCAAGTTTCAGAAAAATC 57.298 30.769 0.00 0.00 33.75 2.17
8793 12697 8.598075 CAACCTTTCAAGTTTCAGAAAAATCTG 58.402 33.333 0.00 0.00 39.00 2.90
8795 12699 8.966868 ACCTTTCAAGTTTCAGAAAAATCTGTA 58.033 29.630 0.00 0.00 38.75 2.74
8796 12700 9.801873 CCTTTCAAGTTTCAGAAAAATCTGTAA 57.198 29.630 0.00 0.39 38.75 2.41
8838 12742 8.679725 AGTTAGAGATGTATAGTATTCCCTCCA 58.320 37.037 0.00 0.00 0.00 3.86
8846 12750 9.629649 ATGTATAGTATTCCCTCCATTCCTAAA 57.370 33.333 0.00 0.00 0.00 1.85
8875 12779 7.504924 AGTCTTTCTAGAGATCTCAATACGG 57.495 40.000 24.39 10.24 0.00 4.02
8876 12780 7.284074 AGTCTTTCTAGAGATCTCAATACGGA 58.716 38.462 24.39 12.20 0.00 4.69
8877 12781 7.227910 AGTCTTTCTAGAGATCTCAATACGGAC 59.772 40.741 24.39 21.06 0.00 4.79
8878 12782 7.227910 GTCTTTCTAGAGATCTCAATACGGACT 59.772 40.741 24.39 3.15 0.00 3.85
8879 12783 8.430431 TCTTTCTAGAGATCTCAATACGGACTA 58.570 37.037 24.39 4.17 0.00 2.59
8880 12784 7.966246 TTCTAGAGATCTCAATACGGACTAC 57.034 40.000 24.39 0.00 0.00 2.73
8881 12785 7.063934 TCTAGAGATCTCAATACGGACTACA 57.936 40.000 24.39 0.00 0.00 2.74
8882 12786 7.681679 TCTAGAGATCTCAATACGGACTACAT 58.318 38.462 24.39 1.27 0.00 2.29
8883 12787 8.813951 TCTAGAGATCTCAATACGGACTACATA 58.186 37.037 24.39 2.39 0.00 2.29
8884 12788 9.607988 CTAGAGATCTCAATACGGACTACATAT 57.392 37.037 24.39 0.24 0.00 1.78
8885 12789 8.275015 AGAGATCTCAATACGGACTACATATG 57.725 38.462 24.39 0.00 0.00 1.78
8886 12790 7.338196 AGAGATCTCAATACGGACTACATATGG 59.662 40.741 24.39 0.00 0.00 2.74
8887 12791 7.175797 AGATCTCAATACGGACTACATATGGA 58.824 38.462 7.80 0.00 0.00 3.41
8888 12792 6.819397 TCTCAATACGGACTACATATGGAG 57.181 41.667 13.77 13.77 30.44 3.86
8889 12793 5.183331 TCTCAATACGGACTACATATGGAGC 59.817 44.000 15.30 7.75 29.65 4.70
8890 12794 4.830600 TCAATACGGACTACATATGGAGCA 59.169 41.667 15.30 0.00 0.00 4.26
8891 12795 5.303333 TCAATACGGACTACATATGGAGCAA 59.697 40.000 15.30 0.00 0.00 3.91
8892 12796 5.801531 ATACGGACTACATATGGAGCAAA 57.198 39.130 15.30 0.00 0.00 3.68
8893 12797 4.689612 ACGGACTACATATGGAGCAAAT 57.310 40.909 15.30 0.00 0.00 2.32
8894 12798 4.380531 ACGGACTACATATGGAGCAAATG 58.619 43.478 15.30 3.57 0.00 2.32
8895 12799 4.100963 ACGGACTACATATGGAGCAAATGA 59.899 41.667 15.30 0.00 0.00 2.57
8896 12800 4.687948 CGGACTACATATGGAGCAAATGAG 59.312 45.833 15.30 0.00 0.00 2.90
8897 12801 5.615289 GGACTACATATGGAGCAAATGAGT 58.385 41.667 15.30 0.00 0.00 3.41
8898 12802 5.468072 GGACTACATATGGAGCAAATGAGTG 59.532 44.000 15.30 0.00 0.00 3.51
8899 12803 6.239217 ACTACATATGGAGCAAATGAGTGA 57.761 37.500 15.30 0.00 0.00 3.41
8900 12804 6.653020 ACTACATATGGAGCAAATGAGTGAA 58.347 36.000 15.30 0.00 0.00 3.18
8901 12805 7.285566 ACTACATATGGAGCAAATGAGTGAAT 58.714 34.615 15.30 0.00 0.00 2.57
8902 12806 6.630444 ACATATGGAGCAAATGAGTGAATC 57.370 37.500 7.80 0.00 0.00 2.52
8903 12807 6.363065 ACATATGGAGCAAATGAGTGAATCT 58.637 36.000 7.80 0.00 0.00 2.40
8904 12808 7.512130 ACATATGGAGCAAATGAGTGAATCTA 58.488 34.615 7.80 0.00 0.00 1.98
8905 12809 7.443575 ACATATGGAGCAAATGAGTGAATCTAC 59.556 37.037 7.80 0.00 0.00 2.59
8906 12810 5.164620 TGGAGCAAATGAGTGAATCTACA 57.835 39.130 0.00 0.00 0.00 2.74
8907 12811 5.748402 TGGAGCAAATGAGTGAATCTACAT 58.252 37.500 0.00 0.00 0.00 2.29
8908 12812 6.182627 TGGAGCAAATGAGTGAATCTACATT 58.817 36.000 0.00 0.00 34.99 2.71
8909 12813 6.317140 TGGAGCAAATGAGTGAATCTACATTC 59.683 38.462 0.00 0.00 39.24 2.67
8910 12814 6.541641 GGAGCAAATGAGTGAATCTACATTCT 59.458 38.462 0.00 0.00 39.49 2.40
8911 12815 7.712639 GGAGCAAATGAGTGAATCTACATTCTA 59.287 37.037 0.00 0.00 39.49 2.10
8912 12816 9.102757 GAGCAAATGAGTGAATCTACATTCTAA 57.897 33.333 0.00 0.00 39.49 2.10
8913 12817 9.453572 AGCAAATGAGTGAATCTACATTCTAAA 57.546 29.630 0.00 0.00 39.49 1.85
9053 12975 9.337396 CTTTTATAGTGAAGGGTATATGTGCAA 57.663 33.333 0.00 0.00 0.00 4.08
9112 13034 9.491675 TGCATTTCATCATCAAACTTTACAAAT 57.508 25.926 0.00 0.00 0.00 2.32
9126 13048 6.637657 ACTTTACAAATAAGTACTCCCTCCG 58.362 40.000 0.00 0.00 34.22 4.63
9266 13188 6.127619 GCCAAAAGTAATTTCTGAGCACCTAT 60.128 38.462 0.00 0.00 0.00 2.57
9268 13190 8.398665 CCAAAAGTAATTTCTGAGCACCTATAC 58.601 37.037 0.00 0.00 0.00 1.47
9270 13192 9.515226 AAAAGTAATTTCTGAGCACCTATACAA 57.485 29.630 0.00 0.00 0.00 2.41
9273 13195 9.686683 AGTAATTTCTGAGCACCTATACAATTT 57.313 29.630 0.00 0.00 0.00 1.82
9276 13198 7.994425 TTTCTGAGCACCTATACAATTTTCA 57.006 32.000 0.00 0.00 0.00 2.69
9277 13199 7.994425 TTCTGAGCACCTATACAATTTTCAA 57.006 32.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.056480 TCGTACAATAGATCATTGCCCTTG 58.944 41.667 14.14 2.65 46.85 3.61
6 7 5.290493 TCGTACAATAGATCATTGCCCTT 57.710 39.130 14.14 2.74 46.85 3.95
7 8 4.955811 TCGTACAATAGATCATTGCCCT 57.044 40.909 14.14 2.99 46.85 5.19
8 9 5.057149 AGTTCGTACAATAGATCATTGCCC 58.943 41.667 14.14 7.20 46.85 5.36
9 10 5.177696 GGAGTTCGTACAATAGATCATTGCC 59.822 44.000 14.14 7.45 46.85 4.52
10 11 5.986135 AGGAGTTCGTACAATAGATCATTGC 59.014 40.000 14.14 3.28 46.85 3.56
12 13 6.551601 AGGAGGAGTTCGTACAATAGATCATT 59.448 38.462 0.00 0.00 0.00 2.57
13 14 6.071984 AGGAGGAGTTCGTACAATAGATCAT 58.928 40.000 0.00 0.00 0.00 2.45
14 15 5.446860 AGGAGGAGTTCGTACAATAGATCA 58.553 41.667 0.00 0.00 0.00 2.92
15 16 5.334260 CGAGGAGGAGTTCGTACAATAGATC 60.334 48.000 0.00 0.00 32.44 2.75
16 17 4.515944 CGAGGAGGAGTTCGTACAATAGAT 59.484 45.833 0.00 0.00 32.44 1.98
17 18 3.875727 CGAGGAGGAGTTCGTACAATAGA 59.124 47.826 0.00 0.00 32.44 1.98
18 19 4.212213 CGAGGAGGAGTTCGTACAATAG 57.788 50.000 0.00 0.00 32.44 1.73
26 27 1.744368 TCCGACGAGGAGGAGTTCG 60.744 63.158 0.00 0.00 45.98 3.95
27 28 4.315588 TCCGACGAGGAGGAGTTC 57.684 61.111 0.00 0.00 45.98 3.01
48 49 1.225745 CGGCGCGAACTTCATCAAC 60.226 57.895 12.10 0.00 0.00 3.18
93 94 1.305219 CGCCAACATGTCACCCGATT 61.305 55.000 0.00 0.00 0.00 3.34
94 95 1.745115 CGCCAACATGTCACCCGAT 60.745 57.895 0.00 0.00 0.00 4.18
95 96 2.358125 CGCCAACATGTCACCCGA 60.358 61.111 0.00 0.00 0.00 5.14
97 98 3.747976 GGCGCCAACATGTCACCC 61.748 66.667 24.80 0.00 0.00 4.61
134 159 2.728443 GATCCTCCGCCAGGCTGATG 62.728 65.000 17.94 5.80 43.08 3.07
135 160 2.447379 ATCCTCCGCCAGGCTGAT 60.447 61.111 17.94 3.41 43.08 2.90
157 182 4.410400 GGAGGTGGAGGCCAACCG 62.410 72.222 5.01 0.00 43.36 4.44
183 208 3.152341 GGCCATTATCAACTCCATCCAG 58.848 50.000 0.00 0.00 0.00 3.86
194 219 1.419012 CAGAGCAGGAGGCCATTATCA 59.581 52.381 5.01 0.00 46.50 2.15
231 257 1.192146 TTGGAGGAGTTCGAGGTGGG 61.192 60.000 0.00 0.00 0.00 4.61
250 276 1.526575 CTTTGCCTTGGCCGACACAT 61.527 55.000 9.35 0.00 0.00 3.21
253 279 3.294493 GCTTTGCCTTGGCCGACA 61.294 61.111 9.35 0.00 0.00 4.35
266 292 4.729918 CCTCTGGCTGCGGGCTTT 62.730 66.667 21.03 0.00 41.46 3.51
277 303 0.674895 GGCTAATATGGCGCCTCTGG 60.675 60.000 29.70 13.53 40.62 3.86
278 304 2.846371 GGCTAATATGGCGCCTCTG 58.154 57.895 29.70 12.51 40.62 3.35
325 351 3.382832 AGGAGGTGAAGGACGCGG 61.383 66.667 12.47 0.00 0.00 6.46
336 362 1.380112 GGTCGTAGGAGCAGGAGGT 60.380 63.158 9.63 0.00 40.40 3.85
349 375 4.320456 CACAGCAGGCCTGGTCGT 62.320 66.667 34.15 28.66 46.14 4.34
350 376 3.320879 ATCACAGCAGGCCTGGTCG 62.321 63.158 34.15 28.05 46.14 4.79
358 384 0.812811 CACATCCGGATCACAGCAGG 60.813 60.000 15.88 2.99 0.00 4.85
362 388 0.528466 CGTCCACATCCGGATCACAG 60.528 60.000 15.88 5.90 37.41 3.66
374 400 2.030363 GCAACATTCCAATTCGTCCACA 60.030 45.455 0.00 0.00 0.00 4.17
375 401 2.030363 TGCAACATTCCAATTCGTCCAC 60.030 45.455 0.00 0.00 0.00 4.02
376 402 2.228582 CTGCAACATTCCAATTCGTCCA 59.771 45.455 0.00 0.00 0.00 4.02
380 407 1.261989 CGCTGCAACATTCCAATTCG 58.738 50.000 0.00 0.00 0.00 3.34
401 428 4.101448 CCCACTCCCTGCCCTTCG 62.101 72.222 0.00 0.00 0.00 3.79
402 429 2.203549 CTTCCCACTCCCTGCCCTTC 62.204 65.000 0.00 0.00 0.00 3.46
408 435 1.341383 CCCATTTCTTCCCACTCCCTG 60.341 57.143 0.00 0.00 0.00 4.45
418 445 4.273318 ACCTAGCACATTCCCATTTCTTC 58.727 43.478 0.00 0.00 0.00 2.87
420 447 4.019174 CAACCTAGCACATTCCCATTTCT 58.981 43.478 0.00 0.00 0.00 2.52
426 453 2.507407 TTCCAACCTAGCACATTCCC 57.493 50.000 0.00 0.00 0.00 3.97
429 456 3.009723 CGACATTCCAACCTAGCACATT 58.990 45.455 0.00 0.00 0.00 2.71
431 458 1.346395 ACGACATTCCAACCTAGCACA 59.654 47.619 0.00 0.00 0.00 4.57
432 459 2.000447 GACGACATTCCAACCTAGCAC 59.000 52.381 0.00 0.00 0.00 4.40
465 493 0.108138 CGAGAGACCAAATCCGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
473 501 2.261671 GCCGCTCGAGAGACCAAA 59.738 61.111 18.75 0.00 35.39 3.28
496 524 2.815647 GCCACGTAGCACCTCTGC 60.816 66.667 0.00 0.00 44.63 4.26
497 525 2.507102 CGCCACGTAGCACCTCTG 60.507 66.667 6.80 0.00 0.00 3.35
506 534 0.531090 GGTATTCATGGCGCCACGTA 60.531 55.000 35.50 19.91 0.00 3.57
510 538 1.148273 GAGGGTATTCATGGCGCCA 59.852 57.895 34.80 34.80 0.00 5.69
523 551 2.637872 TCCTCTGTTTTTCGATGAGGGT 59.362 45.455 0.00 0.00 43.14 4.34
530 558 1.542547 GGTGCCTCCTCTGTTTTTCGA 60.543 52.381 0.00 0.00 0.00 3.71
539 567 3.278072 TACGACGGGTGCCTCCTCT 62.278 63.158 0.00 0.00 36.25 3.69
540 568 2.753043 TACGACGGGTGCCTCCTC 60.753 66.667 0.00 0.00 36.25 3.71
547 575 0.744874 ATCCATCAGTACGACGGGTG 59.255 55.000 0.00 0.00 0.00 4.61
548 576 1.030457 GATCCATCAGTACGACGGGT 58.970 55.000 0.00 0.00 0.00 5.28
549 577 1.267261 GAGATCCATCAGTACGACGGG 59.733 57.143 0.00 2.05 0.00 5.28
552 580 1.948145 ACGGAGATCCATCAGTACGAC 59.052 52.381 0.00 0.00 35.14 4.34
553 581 1.947456 CACGGAGATCCATCAGTACGA 59.053 52.381 0.00 0.00 35.14 3.43
554 582 1.676529 ACACGGAGATCCATCAGTACG 59.323 52.381 0.00 0.00 35.14 3.67
555 583 2.427453 ACACACGGAGATCCATCAGTAC 59.573 50.000 0.00 0.00 35.14 2.73
556 584 2.735151 ACACACGGAGATCCATCAGTA 58.265 47.619 0.00 0.00 35.14 2.74
557 585 1.561643 ACACACGGAGATCCATCAGT 58.438 50.000 0.00 0.00 35.14 3.41
558 586 2.680312 AACACACGGAGATCCATCAG 57.320 50.000 0.00 0.00 35.14 2.90
559 587 3.417069 AAAACACACGGAGATCCATCA 57.583 42.857 0.00 0.00 35.14 3.07
560 588 3.670627 GCAAAAACACACGGAGATCCATC 60.671 47.826 0.00 0.00 35.14 3.51
561 589 2.228822 GCAAAAACACACGGAGATCCAT 59.771 45.455 0.00 0.00 35.14 3.41
562 590 1.606668 GCAAAAACACACGGAGATCCA 59.393 47.619 0.00 0.00 35.14 3.41
565 593 2.030007 CCATGCAAAAACACACGGAGAT 60.030 45.455 0.00 0.00 0.00 2.75
580 608 2.699554 ACCATAGGGCCCCATGCA 60.700 61.111 23.67 2.29 43.89 3.96
582 610 1.355718 ACTGACCATAGGGCCCCATG 61.356 60.000 22.30 22.30 37.90 3.66
585 613 2.452937 GGACTGACCATAGGGCCCC 61.453 68.421 21.43 1.37 37.90 5.80
586 614 2.808206 CGGACTGACCATAGGGCCC 61.808 68.421 16.46 16.46 38.90 5.80
587 615 1.760875 TCGGACTGACCATAGGGCC 60.761 63.158 0.00 0.00 38.90 5.80
588 616 1.442148 GTCGGACTGACCATAGGGC 59.558 63.158 2.72 0.00 42.04 5.19
615 651 1.085893 TACGTAGACATTCGGACGCA 58.914 50.000 0.00 0.00 35.15 5.24
632 668 0.034896 CCTATGTGTGGGGCGGATAC 59.965 60.000 0.00 0.00 0.00 2.24
638 674 1.999634 ATCCAGCCTATGTGTGGGGC 62.000 60.000 0.00 0.00 45.57 5.80
642 678 2.288457 CCTCGTATCCAGCCTATGTGTG 60.288 54.545 0.00 0.00 0.00 3.82
643 679 1.964223 CCTCGTATCCAGCCTATGTGT 59.036 52.381 0.00 0.00 0.00 3.72
644 680 2.239400 TCCTCGTATCCAGCCTATGTG 58.761 52.381 0.00 0.00 0.00 3.21
645 681 2.677542 TCCTCGTATCCAGCCTATGT 57.322 50.000 0.00 0.00 0.00 2.29
646 682 3.854666 CAATCCTCGTATCCAGCCTATG 58.145 50.000 0.00 0.00 0.00 2.23
647 683 2.234908 GCAATCCTCGTATCCAGCCTAT 59.765 50.000 0.00 0.00 0.00 2.57
648 684 1.618837 GCAATCCTCGTATCCAGCCTA 59.381 52.381 0.00 0.00 0.00 3.93
649 685 0.394565 GCAATCCTCGTATCCAGCCT 59.605 55.000 0.00 0.00 0.00 4.58
650 686 0.603975 GGCAATCCTCGTATCCAGCC 60.604 60.000 0.00 0.00 0.00 4.85
651 687 0.394565 AGGCAATCCTCGTATCCAGC 59.605 55.000 0.00 0.00 38.72 4.85
652 688 3.511540 TGATAGGCAATCCTCGTATCCAG 59.488 47.826 0.00 0.00 43.06 3.86
685 721 2.158593 TCTGTCCCAAACCCGATTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
686 722 1.422024 TCTGTCCCAAACCCGATTCAA 59.578 47.619 0.00 0.00 0.00 2.69
687 723 1.060729 TCTGTCCCAAACCCGATTCA 58.939 50.000 0.00 0.00 0.00 2.57
688 724 2.289565 GATCTGTCCCAAACCCGATTC 58.710 52.381 0.00 0.00 0.00 2.52
689 725 1.064685 GGATCTGTCCCAAACCCGATT 60.065 52.381 0.00 0.00 38.69 3.34
690 726 0.546598 GGATCTGTCCCAAACCCGAT 59.453 55.000 0.00 0.00 38.69 4.18
691 727 1.895020 CGGATCTGTCCCAAACCCGA 61.895 60.000 0.00 0.00 41.83 5.14
692 728 1.449601 CGGATCTGTCCCAAACCCG 60.450 63.158 0.00 0.00 41.83 5.28
693 729 1.077716 CCGGATCTGTCCCAAACCC 60.078 63.158 0.00 0.00 41.83 4.11
694 730 1.077716 CCCGGATCTGTCCCAAACC 60.078 63.158 0.73 0.00 41.83 3.27
695 731 1.077716 CCCCGGATCTGTCCCAAAC 60.078 63.158 0.73 0.00 41.83 2.93
696 732 2.978946 GCCCCGGATCTGTCCCAAA 61.979 63.158 0.73 0.00 41.83 3.28
697 733 3.407967 GCCCCGGATCTGTCCCAA 61.408 66.667 0.73 0.00 41.83 4.12
698 734 4.731853 TGCCCCGGATCTGTCCCA 62.732 66.667 0.73 0.00 41.83 4.37
699 735 3.171388 ATGCCCCGGATCTGTCCC 61.171 66.667 0.73 0.00 41.83 4.46
700 736 2.111878 CATGCCCCGGATCTGTCC 59.888 66.667 0.73 0.00 41.40 4.02
701 737 2.111878 CCATGCCCCGGATCTGTC 59.888 66.667 0.73 0.00 0.00 3.51
702 738 3.492353 CCCATGCCCCGGATCTGT 61.492 66.667 0.73 0.00 0.00 3.41
703 739 4.275508 CCCCATGCCCCGGATCTG 62.276 72.222 0.73 0.00 0.00 2.90
712 748 4.778143 AACTCGACGCCCCATGCC 62.778 66.667 0.00 0.00 36.24 4.40
713 749 3.499737 CAACTCGACGCCCCATGC 61.500 66.667 0.00 0.00 0.00 4.06
714 750 3.499737 GCAACTCGACGCCCCATG 61.500 66.667 0.00 0.00 0.00 3.66
718 754 4.814294 ATCCGCAACTCGACGCCC 62.814 66.667 0.00 0.00 41.67 6.13
719 755 3.554692 CATCCGCAACTCGACGCC 61.555 66.667 0.00 0.00 41.67 5.68
720 756 4.210304 GCATCCGCAACTCGACGC 62.210 66.667 0.00 0.00 41.67 5.19
721 757 2.507102 AGCATCCGCAACTCGACG 60.507 61.111 0.00 0.00 42.27 5.12
732 768 5.447818 CCTTTACGAAAATGTCAGAGCATCC 60.448 44.000 0.00 0.00 33.66 3.51
800 836 1.453015 ACCTGCACCAACGAAGCAA 60.453 52.632 0.00 0.00 37.89 3.91
850 886 1.943730 AAACTGTGGGGGACTGGCAA 61.944 55.000 0.00 0.00 0.00 4.52
992 1033 3.418913 CGTTGCCCATCGTTGCGA 61.419 61.111 0.00 0.00 41.13 5.10
1153 1194 1.597854 GCGAATCGGGCATGATCCA 60.598 57.895 4.35 0.00 0.00 3.41
1257 1299 2.946650 AATCACCCCCACCCCCAG 60.947 66.667 0.00 0.00 0.00 4.45
1258 1300 2.139563 TAGAATCACCCCCACCCCCA 62.140 60.000 0.00 0.00 0.00 4.96
1259 1301 1.308392 TAGAATCACCCCCACCCCC 60.308 63.158 0.00 0.00 0.00 5.40
1260 1302 1.353394 CCTAGAATCACCCCCACCCC 61.353 65.000 0.00 0.00 0.00 4.95
1261 1303 0.623617 ACCTAGAATCACCCCCACCC 60.624 60.000 0.00 0.00 0.00 4.61
1270 1312 1.278985 CCACTGGTGCACCTAGAATCA 59.721 52.381 34.75 13.38 36.82 2.57
1295 1337 3.417224 CATCGGCATCGGCATCGG 61.417 66.667 0.00 0.00 43.71 4.18
1296 1338 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
1297 1339 3.730761 GGCATCGGCATCGGCATC 61.731 66.667 0.00 0.00 43.71 3.91
1298 1340 4.567488 TGGCATCGGCATCGGCAT 62.567 61.111 0.00 0.00 43.71 4.40
1333 1375 2.297597 GGTAATCTCAGATCCACCTCCG 59.702 54.545 10.09 0.00 0.00 4.63
1334 1376 3.070302 GTGGTAATCTCAGATCCACCTCC 59.930 52.174 12.71 4.39 41.58 4.30
1335 1377 4.329462 GTGGTAATCTCAGATCCACCTC 57.671 50.000 12.71 8.78 41.58 3.85
1338 1380 2.224066 CGGGTGGTAATCTCAGATCCAC 60.224 54.545 14.69 14.69 45.17 4.02
1339 1381 2.039418 CGGGTGGTAATCTCAGATCCA 58.961 52.381 0.00 0.00 0.00 3.41
1340 1382 2.040178 ACGGGTGGTAATCTCAGATCC 58.960 52.381 0.00 0.00 0.00 3.36
1408 1450 8.363390 AGATGCTTTCTATGAACGAGATGATTA 58.637 33.333 0.00 0.00 30.96 1.75
1416 1458 6.479990 CCATGTAAGATGCTTTCTATGAACGA 59.520 38.462 0.00 0.00 33.05 3.85
1486 1528 4.243793 TCCACCCAGAAAAGAAAGAACA 57.756 40.909 0.00 0.00 0.00 3.18
1725 1768 1.202348 GCCAGCCCAAACTGAACATAC 59.798 52.381 0.00 0.00 40.25 2.39
1822 1946 5.134661 TGGTTGGGATACTCGAAAGTTTTT 58.865 37.500 0.00 0.00 36.92 1.94
1839 1966 8.239314 GCATCTCATGTACAATATATTGGTTGG 58.761 37.037 25.45 12.99 41.96 3.77
1872 1999 7.053498 TCGCATATACAACCCATTGCATATAT 58.947 34.615 0.00 0.00 39.66 0.86
1873 2000 6.410540 TCGCATATACAACCCATTGCATATA 58.589 36.000 0.00 0.00 39.66 0.86
1874 2001 5.252547 TCGCATATACAACCCATTGCATAT 58.747 37.500 0.00 0.00 39.66 1.78
1875 2002 4.646572 TCGCATATACAACCCATTGCATA 58.353 39.130 0.00 0.00 39.66 3.14
1876 2003 3.485394 TCGCATATACAACCCATTGCAT 58.515 40.909 0.00 0.00 39.66 3.96
1877 2004 2.924421 TCGCATATACAACCCATTGCA 58.076 42.857 0.00 0.00 39.66 4.08
1882 2009 8.318412 ACATCTATAATTCGCATATACAACCCA 58.682 33.333 0.00 0.00 0.00 4.51
1919 2046 5.163972 GCAACGTATTGTTATGGTACGAACA 60.164 40.000 10.62 3.30 42.65 3.18
1923 2050 4.327898 ACTGCAACGTATTGTTATGGTACG 59.672 41.667 0.00 2.98 44.78 3.67
2020 2565 4.179298 GTTTGTATGTCGTACCCCTTCTC 58.821 47.826 0.00 0.00 32.03 2.87
2040 2587 1.904287 TTGGCTTGATTACGCAGGTT 58.096 45.000 0.00 0.00 0.00 3.50
2041 2588 1.539827 GTTTGGCTTGATTACGCAGGT 59.460 47.619 0.00 0.00 0.00 4.00
2069 2616 6.589830 ACAACTTACAGCATTAGATTAGCG 57.410 37.500 0.00 0.00 0.00 4.26
2082 2629 8.361139 CCCATCCTATAGAGTTACAACTTACAG 58.639 40.741 0.00 0.00 39.88 2.74
2085 2632 9.670442 AATCCCATCCTATAGAGTTACAACTTA 57.330 33.333 0.00 0.00 39.88 2.24
2129 2676 8.873215 ACGTATTTCAGAAATATGGAGTACTG 57.127 34.615 27.83 12.76 42.16 2.74
2130 2677 9.530633 GAACGTATTTCAGAAATATGGAGTACT 57.469 33.333 27.83 11.68 42.16 2.73
2249 2797 1.904287 TAACATTGTGACCACCTGGC 58.096 50.000 0.00 0.00 39.32 4.85
2307 2855 1.090052 AAACCGATAAGCTCGCTGCC 61.090 55.000 0.00 0.00 46.25 4.85
2343 2891 9.300681 TCCATGAAAGAACAATCTGAATAAACT 57.699 29.630 0.00 0.00 35.59 2.66
2463 3011 9.480053 AAAATCTGTTTTGAACTTGTATCCATG 57.520 29.630 0.00 0.00 36.24 3.66
2476 3024 8.954950 TCCTGCATTTTAAAAATCTGTTTTGA 57.045 26.923 4.44 0.00 37.59 2.69
2545 3097 2.821366 GTGTGATGCAGAGGCCGG 60.821 66.667 0.00 0.00 40.13 6.13
2592 3146 5.473504 GCTTGAGACCTTATTTTGAACCTCA 59.526 40.000 0.00 0.00 0.00 3.86
2696 3251 1.743995 CCGGTTTGGATGACGGTCC 60.744 63.158 5.55 0.00 42.00 4.46
2697 3252 3.884900 CCGGTTTGGATGACGGTC 58.115 61.111 0.00 0.00 42.00 4.79
2702 3260 1.700739 ACCTACAACCGGTTTGGATGA 59.299 47.619 27.60 8.13 42.97 2.92
2707 3265 3.622166 AGGATACCTACAACCGGTTTG 57.378 47.619 19.55 15.61 38.30 2.93
2727 3285 2.012937 CGTTGGGAAACGGTAGCATA 57.987 50.000 3.15 0.00 42.03 3.14
2728 3286 2.849081 CGTTGGGAAACGGTAGCAT 58.151 52.632 3.15 0.00 42.03 3.79
2776 3334 3.794028 GTCGTTACTCAGTCATGCAGATC 59.206 47.826 0.00 0.00 0.00 2.75
2780 3338 1.616374 TGGTCGTTACTCAGTCATGCA 59.384 47.619 0.00 0.00 0.00 3.96
2786 3344 4.386867 CCATACATGGTCGTTACTCAGT 57.613 45.455 0.00 0.00 43.05 3.41
2801 3359 3.088532 GGTGTTTGCTTGGATCCATACA 58.911 45.455 17.06 14.12 0.00 2.29
2805 3363 0.541764 GGGGTGTTTGCTTGGATCCA 60.542 55.000 11.44 11.44 0.00 3.41
2806 3364 0.541764 TGGGGTGTTTGCTTGGATCC 60.542 55.000 4.20 4.20 0.00 3.36
2817 3375 0.105760 TGCAGGTCAATTGGGGTGTT 60.106 50.000 5.42 0.00 0.00 3.32
2824 3382 3.742369 GGAACAATGTTGCAGGTCAATTG 59.258 43.478 12.74 0.00 36.99 2.32
2827 3385 2.361757 CTGGAACAATGTTGCAGGTCAA 59.638 45.455 31.36 6.36 38.70 3.18
2841 3431 2.945440 GCCATATGGAACTGCTGGAACA 60.945 50.000 26.47 0.00 37.39 3.18
2880 3470 0.528470 AACAGCAGCTCGAGTAGGAC 59.472 55.000 15.13 0.00 0.00 3.85
2893 3490 1.280998 GGGGTAGAGCCTAAAACAGCA 59.719 52.381 0.00 0.00 37.43 4.41
2958 3569 4.317488 GGTCCATGTGTCCTTTAACGTTA 58.683 43.478 3.29 3.29 0.00 3.18
3015 3626 9.028284 AGGATGAATCAATACAACATTTGTTCT 57.972 29.630 0.00 0.00 42.22 3.01
3072 3688 4.277423 ACAATTTAGCAAAGCGTAGTTGGT 59.723 37.500 5.23 5.23 39.80 3.67
3176 3801 1.572415 ACCGGTCCTATCCTAAGGTCA 59.428 52.381 0.00 0.00 37.91 4.02
3183 3808 7.236847 TGATTTGATAAATACCGGTCCTATCCT 59.763 37.037 12.40 4.06 0.00 3.24
3407 4061 4.683832 AGTTACTAGCCTTGCAGTATTCG 58.316 43.478 0.00 0.00 0.00 3.34
3438 4092 3.876309 TTTCTGGGAATATACCTGGCC 57.124 47.619 0.00 0.00 0.00 5.36
3482 4138 9.844257 CCTTCTTCAATAGGAGTAAATTCATCT 57.156 33.333 0.00 0.00 33.13 2.90
3515 4171 2.856222 AGAAGGGCTTGTTGAAGACAG 58.144 47.619 0.00 0.00 39.27 3.51
3524 4180 4.724279 TCTCCTTTTTAGAAGGGCTTGT 57.276 40.909 1.57 0.00 37.99 3.16
3528 4184 5.257262 ACTGATTCTCCTTTTTAGAAGGGC 58.743 41.667 1.57 0.00 36.46 5.19
3569 4225 8.522830 TCTATCAAAGCAACTATTCCTTTTTGG 58.477 33.333 0.00 0.00 37.10 3.28
3570 4226 9.912634 TTCTATCAAAGCAACTATTCCTTTTTG 57.087 29.630 0.00 0.00 0.00 2.44
3571 4227 9.914131 GTTCTATCAAAGCAACTATTCCTTTTT 57.086 29.630 0.00 0.00 0.00 1.94
3572 4228 8.237267 CGTTCTATCAAAGCAACTATTCCTTTT 58.763 33.333 0.00 0.00 0.00 2.27
3573 4229 7.606456 TCGTTCTATCAAAGCAACTATTCCTTT 59.394 33.333 0.00 0.00 0.00 3.11
3574 4230 7.103641 TCGTTCTATCAAAGCAACTATTCCTT 58.896 34.615 0.00 0.00 0.00 3.36
3575 4231 6.640518 TCGTTCTATCAAAGCAACTATTCCT 58.359 36.000 0.00 0.00 0.00 3.36
3576 4232 6.903883 TCGTTCTATCAAAGCAACTATTCC 57.096 37.500 0.00 0.00 0.00 3.01
3577 4233 8.604035 TCATTCGTTCTATCAAAGCAACTATTC 58.396 33.333 0.00 0.00 0.00 1.75
3578 4234 8.492673 TCATTCGTTCTATCAAAGCAACTATT 57.507 30.769 0.00 0.00 0.00 1.73
3579 4235 8.492673 TTCATTCGTTCTATCAAAGCAACTAT 57.507 30.769 0.00 0.00 0.00 2.12
3580 4236 7.899178 TTCATTCGTTCTATCAAAGCAACTA 57.101 32.000 0.00 0.00 0.00 2.24
3581 4237 6.801539 TTCATTCGTTCTATCAAAGCAACT 57.198 33.333 0.00 0.00 0.00 3.16
3582 4238 7.851822 TTTTCATTCGTTCTATCAAAGCAAC 57.148 32.000 0.00 0.00 0.00 4.17
3583 4239 7.918033 TGTTTTTCATTCGTTCTATCAAAGCAA 59.082 29.630 0.00 0.00 0.00 3.91
3584 4240 7.421599 TGTTTTTCATTCGTTCTATCAAAGCA 58.578 30.769 0.00 0.00 0.00 3.91
3585 4241 7.851822 TGTTTTTCATTCGTTCTATCAAAGC 57.148 32.000 0.00 0.00 0.00 3.51
3620 4276 4.512571 CACTCATCCGCATATGATTGACAA 59.487 41.667 6.97 0.00 38.26 3.18
3622 4278 3.434641 CCACTCATCCGCATATGATTGAC 59.565 47.826 6.97 0.00 38.26 3.18
3636 4292 5.712152 ACAACATCCTTTTTCCACTCATC 57.288 39.130 0.00 0.00 0.00 2.92
3745 4401 9.844257 ATCCTTAAGAAATTGACCTATGAAGAG 57.156 33.333 3.36 0.00 0.00 2.85
3774 4431 3.666274 TCGTCGGGTTATTGTGTGATTT 58.334 40.909 0.00 0.00 0.00 2.17
3781 4438 2.444421 AGACTCTCGTCGGGTTATTGT 58.556 47.619 0.00 0.00 44.93 2.71
3796 4453 5.415701 CAGCCCTCTCTAGATCATAAGACTC 59.584 48.000 0.00 0.00 0.00 3.36
3845 4502 8.680001 GTTTGTTGGACCTACTAAAAGAGAAAA 58.320 33.333 7.60 0.00 0.00 2.29
3846 4503 8.050930 AGTTTGTTGGACCTACTAAAAGAGAAA 58.949 33.333 7.60 0.00 0.00 2.52
3849 4506 8.148999 AGTAGTTTGTTGGACCTACTAAAAGAG 58.851 37.037 7.60 0.00 0.00 2.85
3857 4514 4.347360 ACCAGTAGTTTGTTGGACCTAC 57.653 45.455 0.00 0.00 35.89 3.18
3860 4517 2.034179 GCAACCAGTAGTTTGTTGGACC 59.966 50.000 10.31 0.00 39.71 4.46
3939 7300 8.196771 TGTACTCTTGACAAAAATTTGCAGATT 58.803 29.630 5.82 0.00 41.79 2.40
3941 7302 7.094508 TGTACTCTTGACAAAAATTTGCAGA 57.905 32.000 5.82 4.80 41.79 4.26
3942 7303 7.935338 ATGTACTCTTGACAAAAATTTGCAG 57.065 32.000 5.82 0.95 41.79 4.41
3944 7305 8.268738 GTGAATGTACTCTTGACAAAAATTTGC 58.731 33.333 5.82 0.62 41.79 3.68
3947 7308 8.137437 CAGGTGAATGTACTCTTGACAAAAATT 58.863 33.333 0.00 0.00 0.00 1.82
3953 7314 4.100963 ACACAGGTGAATGTACTCTTGACA 59.899 41.667 6.40 0.00 0.00 3.58
3954 7315 4.632153 ACACAGGTGAATGTACTCTTGAC 58.368 43.478 6.40 0.00 0.00 3.18
3955 7316 4.955811 ACACAGGTGAATGTACTCTTGA 57.044 40.909 6.40 0.00 0.00 3.02
3957 7318 5.885912 ACAAAACACAGGTGAATGTACTCTT 59.114 36.000 6.40 0.00 0.00 2.85
3959 7320 5.751243 ACAAAACACAGGTGAATGTACTC 57.249 39.130 6.40 0.00 0.00 2.59
3960 7321 7.554835 TCTTTACAAAACACAGGTGAATGTACT 59.445 33.333 6.40 0.00 31.70 2.73
3964 7325 6.559810 TGTCTTTACAAAACACAGGTGAATG 58.440 36.000 6.40 4.67 30.91 2.67
4040 7401 5.050295 GCCTTTTTCGGTATCTGTATGCTAC 60.050 44.000 0.00 0.00 0.00 3.58
4065 7426 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
4066 7427 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
4086 7447 9.429359 GTATCTATCTGTATGCTACATTTGCTT 57.571 33.333 0.00 0.00 38.15 3.91
4087 7448 8.588472 TGTATCTATCTGTATGCTACATTTGCT 58.412 33.333 0.00 0.00 38.15 3.91
4088 7449 8.651588 GTGTATCTATCTGTATGCTACATTTGC 58.348 37.037 0.00 0.00 38.15 3.68
4089 7450 9.696917 TGTGTATCTATCTGTATGCTACATTTG 57.303 33.333 0.00 0.00 38.15 2.32
4124 7521 5.687285 GCAGGAAGTGTGAACTTGTAAATTG 59.313 40.000 0.00 0.00 0.00 2.32
4145 7542 5.640189 AAAAGAGATCTGGATTGTTGCAG 57.360 39.130 0.00 0.00 42.29 4.41
4245 7644 6.069088 TCAGAGAGGCCCCTAATTGATTTTTA 60.069 38.462 0.00 0.00 0.00 1.52
4261 7661 6.118852 AGAAAAATAGTGGAATCAGAGAGGC 58.881 40.000 0.00 0.00 0.00 4.70
4361 7777 4.401022 ACCACGGCAAATGATCATCATAT 58.599 39.130 9.06 0.00 35.76 1.78
4363 7779 2.658285 ACCACGGCAAATGATCATCAT 58.342 42.857 9.06 0.00 39.09 2.45
4366 7782 2.674747 GCAAACCACGGCAAATGATCAT 60.675 45.455 1.18 1.18 0.00 2.45
4389 7805 4.359706 CAAAGGAAGTTTGGTTGCACTAC 58.640 43.478 0.00 0.00 41.78 2.73
4424 7840 9.832445 GAACTATTCCTATAACATTGAGAACCA 57.168 33.333 0.00 0.00 0.00 3.67
4509 7925 5.319140 TCATGATTTTGTGAGCTTGGATG 57.681 39.130 0.00 0.00 0.00 3.51
4541 7957 6.869913 AGTAAGATCCGAACATACGTTTTTCA 59.130 34.615 0.00 0.00 34.75 2.69
4610 8026 9.927668 ATTCCAAAAATTTATTAGTGACACCTG 57.072 29.630 0.84 0.00 0.00 4.00
4628 8044 7.120432 CAGGGACAAAAAGTTTTCATTCCAAAA 59.880 33.333 17.93 0.00 0.00 2.44
4638 8054 4.935205 GTGAAAGCAGGGACAAAAAGTTTT 59.065 37.500 0.00 0.00 0.00 2.43
4656 8090 9.571810 GTAAGAATTATGCATTCACATGTGAAA 57.428 29.630 37.35 25.14 43.63 2.69
4658 8092 8.510243 AGTAAGAATTATGCATTCACATGTGA 57.490 30.769 24.56 24.56 43.63 3.58
4755 8189 2.270352 TCAGTTCCGCCTGTTTCAAT 57.730 45.000 0.00 0.00 34.02 2.57
4880 8314 4.789802 GCTGCCTTTACTTGTTCAGTTGTC 60.790 45.833 0.00 0.00 36.88 3.18
5039 8479 8.365060 GGGGGCTTTATTACTTAAAAGGTTTA 57.635 34.615 0.00 0.00 34.07 2.01
5040 8480 7.248743 GGGGGCTTTATTACTTAAAAGGTTT 57.751 36.000 0.00 0.00 34.07 3.27
5090 8530 6.183360 ACGAAAAGAAAAGAAGGCATTCAGAA 60.183 34.615 14.34 0.00 37.94 3.02
5179 8619 4.051237 GACAATTTTCAGCCACCTTTGTC 58.949 43.478 0.00 0.00 36.03 3.18
5431 8871 3.456380 ACCACATGCTAAATGAAGGGT 57.544 42.857 0.00 0.00 0.00 4.34
5432 8872 3.632145 GGTACCACATGCTAAATGAAGGG 59.368 47.826 7.15 0.00 0.00 3.95
5453 8930 4.728882 GCGAACAGTGCATCTCTAAAATGG 60.729 45.833 0.00 0.00 0.00 3.16
5507 8984 0.393077 GCTACTCACCATACCGCCAT 59.607 55.000 0.00 0.00 0.00 4.40
5557 9034 9.270640 CATAGTAAGAAAGGAGGATGATCAAAG 57.729 37.037 0.00 0.00 0.00 2.77
5570 9047 4.258543 TGCCGAAACCATAGTAAGAAAGG 58.741 43.478 0.00 0.00 0.00 3.11
5658 9135 6.985188 TCACCTGTTCAATAAGTAGCAATC 57.015 37.500 0.00 0.00 0.00 2.67
5672 9153 2.139118 GAGCTGTGAGTTCACCTGTTC 58.861 52.381 9.60 6.63 45.88 3.18
5738 9219 4.580580 GGTGGAAGTTGACCATCCATTATC 59.419 45.833 8.84 0.00 44.55 1.75
5755 9236 4.661222 TCATGAAATGTGCTAAGGTGGAA 58.339 39.130 0.00 0.00 46.80 3.53
5765 9246 8.970691 ACAAGTATTTAACTCATGAAATGTGC 57.029 30.769 0.00 0.00 46.80 4.57
5877 9489 3.391296 AGAGCGCCCTTATAAAATGGAGA 59.609 43.478 2.29 0.00 0.00 3.71
5927 9539 6.318628 TGTGTACTTGAATTTTGTGTGTGTC 58.681 36.000 0.00 0.00 0.00 3.67
5982 9595 8.788325 AAGTAGTAATACTGCCGAGAAAAATT 57.212 30.769 3.18 0.00 30.68 1.82
6207 9858 8.944029 GCATCACATATCTGCTTTGTAATATCT 58.056 33.333 0.00 0.00 33.15 1.98
6262 9913 8.581057 ACGAAGCTTGTAAGAACTATATGATG 57.419 34.615 2.10 0.00 0.00 3.07
6270 9921 7.328737 CACTACAATACGAAGCTTGTAAGAACT 59.671 37.037 2.10 0.00 38.09 3.01
6426 10081 5.794687 TGCATTATTTACAAGACGTCCTG 57.205 39.130 13.01 12.80 0.00 3.86
6427 10082 5.880332 ACATGCATTATTTACAAGACGTCCT 59.120 36.000 13.01 0.00 0.00 3.85
6428 10083 6.119144 ACATGCATTATTTACAAGACGTCC 57.881 37.500 13.01 0.00 0.00 4.79
6519 10175 9.060347 CATGGTATTTATCTGTGCAAGATAGTT 57.940 33.333 14.25 10.49 46.31 2.24
6614 10270 5.689383 ACACCATTGTTTCATGTACTGAC 57.311 39.130 0.00 0.00 32.17 3.51
6642 10427 6.936900 AGCTAAGCTCAGTGAACTATTCAAAA 59.063 34.615 0.00 0.00 36.16 2.44
6643 10428 6.467677 AGCTAAGCTCAGTGAACTATTCAAA 58.532 36.000 0.00 0.00 36.16 2.69
6919 10710 0.394192 CACAGACTGAGTTGCTGGGA 59.606 55.000 10.08 0.00 35.07 4.37
6921 10712 2.469274 ATCACAGACTGAGTTGCTGG 57.531 50.000 10.08 0.00 34.05 4.85
6928 10719 6.663093 AGGATAGGCTAATATCACAGACTGAG 59.337 42.308 10.08 0.55 34.42 3.35
7113 10938 5.385617 GTGCTTATTGTGCAAGTGAACTAG 58.614 41.667 0.00 0.00 42.41 2.57
7125 10950 5.415701 ACTGATAAAGGTGGTGCTTATTGTG 59.584 40.000 0.00 0.00 0.00 3.33
7160 10985 4.895889 GCCTTCCTCCTAAATAAGCCAATT 59.104 41.667 0.00 0.00 0.00 2.32
7276 11101 6.603997 AGAGAAGTGAGGTCGAACTTACATAT 59.396 38.462 25.25 12.55 36.77 1.78
7393 11220 1.586422 CCATGTAGCCATTCAGACCG 58.414 55.000 0.00 0.00 0.00 4.79
7482 11309 9.474920 AACATACAAACAACTAACAATCCAATG 57.525 29.630 0.00 0.00 0.00 2.82
7726 11556 6.418057 AGATGGCACTTAATTTCAAACCAA 57.582 33.333 0.00 0.00 0.00 3.67
7761 11591 7.036220 GGAGAATAGAAGAAGAACACGATGAA 58.964 38.462 0.00 0.00 0.00 2.57
7770 11600 6.118170 CAGGCAATGGAGAATAGAAGAAGAA 58.882 40.000 0.00 0.00 0.00 2.52
7771 11601 5.190528 ACAGGCAATGGAGAATAGAAGAAGA 59.809 40.000 0.00 0.00 0.00 2.87
7772 11602 5.435291 ACAGGCAATGGAGAATAGAAGAAG 58.565 41.667 0.00 0.00 0.00 2.85
7856 11686 2.248487 GGTAAGTACGAGCACTTGTCG 58.752 52.381 10.60 0.00 39.12 4.35
7861 11691 4.595762 TTCTTTGGTAAGTACGAGCACT 57.404 40.909 2.65 0.00 32.98 4.40
7871 11701 5.147162 GCACAAGACGATTTCTTTGGTAAG 58.853 41.667 0.00 0.00 42.37 2.34
7881 11711 1.267806 CTGCAAGGCACAAGACGATTT 59.732 47.619 0.00 0.00 33.79 2.17
7922 11752 0.908198 GTCTTCCATCAGGAGGCTGT 59.092 55.000 0.00 0.00 46.74 4.40
8140 11973 1.737793 GATGTTCTTAACCTGCGTGGG 59.262 52.381 0.62 0.00 41.11 4.61
8141 11974 1.393539 CGATGTTCTTAACCTGCGTGG 59.606 52.381 0.00 0.00 42.93 4.94
8142 11975 2.066262 ACGATGTTCTTAACCTGCGTG 58.934 47.619 0.00 0.00 32.78 5.34
8143 11976 2.288579 TGACGATGTTCTTAACCTGCGT 60.289 45.455 0.00 0.00 35.29 5.24
8144 11977 2.333926 TGACGATGTTCTTAACCTGCG 58.666 47.619 0.00 0.00 0.00 5.18
8145 11978 3.424962 GCTTGACGATGTTCTTAACCTGC 60.425 47.826 0.00 0.00 0.00 4.85
8146 11979 3.125316 GGCTTGACGATGTTCTTAACCTG 59.875 47.826 0.00 0.00 0.00 4.00
8151 11984 2.354704 CCCAGGCTTGACGATGTTCTTA 60.355 50.000 0.00 0.00 0.00 2.10
8365 12236 8.940952 GCAGTCTAAAACTCAGATAAAGAACAT 58.059 33.333 0.00 0.00 35.45 2.71
8482 12366 2.672478 CGGAGCTTCTAACTCACACTGG 60.672 54.545 0.00 0.00 35.79 4.00
8515 12400 7.696992 AGGGTTACCATTTACACAGTATTTG 57.303 36.000 2.98 0.00 40.13 2.32
8624 12522 2.238395 TGCTATGGTGCCATGTTGTCTA 59.762 45.455 13.57 0.00 37.82 2.59
8659 12563 1.423584 ATCATGCCACGTATCCCTCA 58.576 50.000 0.00 0.00 0.00 3.86
8693 12597 1.467920 CCAAAATCCTCACTCCAGCC 58.532 55.000 0.00 0.00 0.00 4.85
8763 12667 9.500785 TTTTTCTGAAACTTGAAAGGTTGATTT 57.499 25.926 1.58 0.00 35.74 2.17
8812 12716 8.679725 TGGAGGGAATACTATACATCTCTAACT 58.320 37.037 0.00 0.00 0.00 2.24
8815 12719 9.702253 GAATGGAGGGAATACTATACATCTCTA 57.298 37.037 0.00 0.00 0.00 2.43
8818 12722 7.491681 AGGAATGGAGGGAATACTATACATCT 58.508 38.462 0.00 0.00 0.00 2.90
8820 12724 9.629649 TTTAGGAATGGAGGGAATACTATACAT 57.370 33.333 0.00 0.00 0.00 2.29
8821 12725 9.629649 ATTTAGGAATGGAGGGAATACTATACA 57.370 33.333 0.00 0.00 0.00 2.29
8829 12733 9.411848 AGACTTATATTTAGGAATGGAGGGAAT 57.588 33.333 0.00 0.00 0.00 3.01
8830 12734 8.814448 AGACTTATATTTAGGAATGGAGGGAA 57.186 34.615 0.00 0.00 0.00 3.97
8853 12757 7.284074 AGTCCGTATTGAGATCTCTAGAAAGA 58.716 38.462 22.95 10.33 0.00 2.52
8862 12766 7.175797 TCCATATGTAGTCCGTATTGAGATCT 58.824 38.462 0.00 0.00 0.00 2.75
8863 12767 7.392494 TCCATATGTAGTCCGTATTGAGATC 57.608 40.000 1.24 0.00 0.00 2.75
8864 12768 6.127591 GCTCCATATGTAGTCCGTATTGAGAT 60.128 42.308 1.24 0.00 37.14 2.75
8865 12769 5.183331 GCTCCATATGTAGTCCGTATTGAGA 59.817 44.000 1.24 0.00 37.14 3.27
8866 12770 5.048013 TGCTCCATATGTAGTCCGTATTGAG 60.048 44.000 1.24 0.00 37.64 3.02
8867 12771 4.830600 TGCTCCATATGTAGTCCGTATTGA 59.169 41.667 1.24 0.00 0.00 2.57
8868 12772 5.134202 TGCTCCATATGTAGTCCGTATTG 57.866 43.478 1.24 0.00 0.00 1.90
8869 12773 5.801531 TTGCTCCATATGTAGTCCGTATT 57.198 39.130 1.24 0.00 0.00 1.89
8870 12774 5.801531 TTTGCTCCATATGTAGTCCGTAT 57.198 39.130 1.24 0.00 0.00 3.06
8871 12775 5.303333 TCATTTGCTCCATATGTAGTCCGTA 59.697 40.000 1.24 0.00 0.00 4.02
8872 12776 4.100963 TCATTTGCTCCATATGTAGTCCGT 59.899 41.667 1.24 0.00 0.00 4.69
8873 12777 4.631131 TCATTTGCTCCATATGTAGTCCG 58.369 43.478 1.24 0.00 0.00 4.79
8874 12778 5.468072 CACTCATTTGCTCCATATGTAGTCC 59.532 44.000 1.24 0.00 0.00 3.85
8875 12779 6.283694 TCACTCATTTGCTCCATATGTAGTC 58.716 40.000 1.24 0.00 0.00 2.59
8876 12780 6.239217 TCACTCATTTGCTCCATATGTAGT 57.761 37.500 1.24 0.00 0.00 2.73
8877 12781 7.660617 AGATTCACTCATTTGCTCCATATGTAG 59.339 37.037 1.24 0.00 0.00 2.74
8878 12782 7.512130 AGATTCACTCATTTGCTCCATATGTA 58.488 34.615 1.24 0.00 0.00 2.29
8879 12783 6.363065 AGATTCACTCATTTGCTCCATATGT 58.637 36.000 1.24 0.00 0.00 2.29
8880 12784 6.879276 AGATTCACTCATTTGCTCCATATG 57.121 37.500 0.00 0.00 0.00 1.78
8881 12785 7.512130 TGTAGATTCACTCATTTGCTCCATAT 58.488 34.615 0.00 0.00 0.00 1.78
8882 12786 6.888105 TGTAGATTCACTCATTTGCTCCATA 58.112 36.000 0.00 0.00 0.00 2.74
8883 12787 5.748402 TGTAGATTCACTCATTTGCTCCAT 58.252 37.500 0.00 0.00 0.00 3.41
8884 12788 5.164620 TGTAGATTCACTCATTTGCTCCA 57.835 39.130 0.00 0.00 0.00 3.86
8885 12789 6.541641 AGAATGTAGATTCACTCATTTGCTCC 59.458 38.462 14.46 0.00 40.59 4.70
8886 12790 7.551035 AGAATGTAGATTCACTCATTTGCTC 57.449 36.000 14.46 0.00 40.59 4.26
8887 12791 9.453572 TTTAGAATGTAGATTCACTCATTTGCT 57.546 29.630 14.46 0.00 40.59 3.91
8954 12858 9.535878 CTCCGCTTCTAAATATAAGTCTTTCTT 57.464 33.333 0.00 0.00 39.89 2.52
8973 12877 2.679082 ACATATGTACTCCCTCCGCTT 58.321 47.619 6.56 0.00 0.00 4.68
8975 12879 4.595762 TTTACATATGTACTCCCTCCGC 57.404 45.455 15.20 0.00 0.00 5.54
9003 12907 7.879070 AGTATGTTCTTTCTGTACGTACTTCA 58.121 34.615 25.12 12.61 42.32 3.02
9004 12908 8.739649 AAGTATGTTCTTTCTGTACGTACTTC 57.260 34.615 25.12 0.83 46.37 3.01
9074 12996 7.918562 TGATGATGAAATGCATTTGTATGTGAG 59.081 33.333 28.67 0.00 37.34 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.