Multiple sequence alignment - TraesCS7B01G192800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G192800 chr7B 100.000 2501 0 0 1 2501 330999771 330997271 0.000000e+00 4619.0
1 TraesCS7B01G192800 chr7B 93.960 2384 134 8 1 2379 54289160 54286782 0.000000e+00 3596.0
2 TraesCS7B01G192800 chr7B 90.155 193 14 4 2303 2493 330997605 330997416 1.920000e-61 246.0
3 TraesCS7B01G192800 chr7B 86.603 209 19 7 2290 2493 54287009 54286805 3.240000e-54 222.0
4 TraesCS7B01G192800 chr7B 100.000 28 0 0 1 28 655033431 655033404 4.000000e-03 52.8
5 TraesCS7B01G192800 chr5B 93.590 2387 130 14 2 2379 671854363 671856735 0.000000e+00 3539.0
6 TraesCS7B01G192800 chr6B 93.543 2385 138 11 1 2379 593274254 593271880 0.000000e+00 3537.0
7 TraesCS7B01G192800 chr6B 93.297 2387 149 9 1 2379 169048050 169050433 0.000000e+00 3511.0
8 TraesCS7B01G192800 chr6B 92.515 2338 163 10 2 2333 689301348 689303679 0.000000e+00 3338.0
9 TraesCS7B01G192800 chr6B 91.908 2385 179 12 2 2379 689394804 689397181 0.000000e+00 3323.0
10 TraesCS7B01G192800 chr1B 92.295 2388 169 13 1 2379 118347460 118345079 0.000000e+00 3376.0
11 TraesCS7B01G192800 chr1B 92.262 2365 165 16 1 2356 117928058 117930413 0.000000e+00 3338.0
12 TraesCS7B01G192800 chr2B 92.018 2393 170 16 1 2379 675965686 675963301 0.000000e+00 3341.0
13 TraesCS7B01G192800 chr2B 86.432 199 19 6 2300 2493 249662185 249662380 7.010000e-51 211.0
14 TraesCS7B01G192800 chr2B 85.714 196 20 6 2303 2493 675963516 675963324 1.520000e-47 200.0
15 TraesCS7B01G192800 chr3B 86.735 196 18 6 2303 2493 725402226 725402034 7.010000e-51 211.0
16 TraesCS7B01G192800 chr3B 84.018 219 28 4 2279 2493 547040675 547040890 1.170000e-48 204.0
17 TraesCS7B01G192800 chr3B 82.192 219 33 3 2279 2493 708757180 708756964 1.530000e-42 183.0
18 TraesCS7B01G192800 chr3B 81.579 228 33 6 2279 2501 661693831 661693608 1.980000e-41 180.0
19 TraesCS7B01G192800 chr2A 83.254 209 26 7 2290 2493 458997106 458996902 1.530000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G192800 chr7B 330997271 330999771 2500 True 2432.5 4619 95.0775 1 2501 2 chr7B.!!$R3 2500
1 TraesCS7B01G192800 chr7B 54286782 54289160 2378 True 1909.0 3596 90.2815 1 2493 2 chr7B.!!$R2 2492
2 TraesCS7B01G192800 chr5B 671854363 671856735 2372 False 3539.0 3539 93.5900 2 2379 1 chr5B.!!$F1 2377
3 TraesCS7B01G192800 chr6B 593271880 593274254 2374 True 3537.0 3537 93.5430 1 2379 1 chr6B.!!$R1 2378
4 TraesCS7B01G192800 chr6B 169048050 169050433 2383 False 3511.0 3511 93.2970 1 2379 1 chr6B.!!$F1 2378
5 TraesCS7B01G192800 chr6B 689301348 689303679 2331 False 3338.0 3338 92.5150 2 2333 1 chr6B.!!$F2 2331
6 TraesCS7B01G192800 chr6B 689394804 689397181 2377 False 3323.0 3323 91.9080 2 2379 1 chr6B.!!$F3 2377
7 TraesCS7B01G192800 chr1B 118345079 118347460 2381 True 3376.0 3376 92.2950 1 2379 1 chr1B.!!$R1 2378
8 TraesCS7B01G192800 chr1B 117928058 117930413 2355 False 3338.0 3338 92.2620 1 2356 1 chr1B.!!$F1 2355
9 TraesCS7B01G192800 chr2B 675963301 675965686 2385 True 1770.5 3341 88.8660 1 2493 2 chr2B.!!$R1 2492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 656 0.310543 AAGAATTTTGCTGCGCACGA 59.689 45.0 5.66 0.09 38.71 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2431 0.043485 TGGGTATACTGGGTCTGCCA 59.957 55.0 2.25 0.0 36.17 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.603473 CCACACGAGGTCAGGGGA 60.603 66.667 0.00 0.00 0.00 4.81
117 118 2.356125 GGTTTTATGAGGCAGCAGAGGA 60.356 50.000 0.00 0.00 0.00 3.71
150 151 0.322277 TCCTGCGGAAGACTACGAGT 60.322 55.000 0.00 0.00 0.00 4.18
207 208 6.656314 TGTACGATATTGTCAAGCGATTTT 57.344 33.333 0.00 0.00 0.00 1.82
324 327 9.793259 ACCATTCATCTTCTTTGTACTTTCTAA 57.207 29.630 0.00 0.00 0.00 2.10
351 354 5.232463 TGATCCGCTTACGTTTTAGTTCTT 58.768 37.500 0.00 0.00 37.70 2.52
477 483 0.904865 TGGGTGATCTTGCCGAGTCT 60.905 55.000 0.00 0.00 0.00 3.24
500 506 2.433436 GAGGCCACTCGGTAAAATGTT 58.567 47.619 5.01 0.00 33.35 2.71
650 656 0.310543 AAGAATTTTGCTGCGCACGA 59.689 45.000 5.66 0.09 38.71 4.35
651 657 0.385974 AGAATTTTGCTGCGCACGAC 60.386 50.000 5.66 0.00 38.71 4.34
837 853 4.209080 GCAAACTATGTGGCAACTTCAAAC 59.791 41.667 0.00 0.00 37.61 2.93
846 862 6.202937 TGTGGCAACTTCAAACTAAAATACG 58.797 36.000 0.00 0.00 37.61 3.06
850 866 5.048573 GCAACTTCAAACTAAAATACGGGGA 60.049 40.000 0.00 0.00 0.00 4.81
999 1020 1.352622 ACTTGCAGGTCCTGTTCCCA 61.353 55.000 20.24 6.78 33.43 4.37
1008 1029 1.886542 GTCCTGTTCCCAATGTTCCAC 59.113 52.381 0.00 0.00 0.00 4.02
1061 1082 3.404224 TGGTCACCACTACGCAATTTA 57.596 42.857 0.00 0.00 0.00 1.40
1203 1224 4.755123 CACTACGAAAACTCAAAGGTCCAT 59.245 41.667 0.00 0.00 0.00 3.41
1268 1289 5.671493 AGGGAACACGTAATTTCCTATCTG 58.329 41.667 17.67 0.00 41.10 2.90
1272 1293 6.817140 GGAACACGTAATTTCCTATCTGTTCT 59.183 38.462 13.14 0.00 38.65 3.01
1284 1305 7.482169 TCCTATCTGTTCTTTCATGTGTACT 57.518 36.000 0.00 0.00 0.00 2.73
1318 1339 4.354387 TCCCACCCCTCTTTTTGTTACATA 59.646 41.667 0.00 0.00 0.00 2.29
1478 1501 3.134879 AACGGTCGTTGAGCTCCA 58.865 55.556 12.15 0.00 36.91 3.86
1497 1520 6.438425 AGCTCCAGAAAATTTACACATGGAAT 59.562 34.615 0.00 0.00 35.09 3.01
1500 1523 8.187913 TCCAGAAAATTTACACATGGAATTGA 57.812 30.769 0.00 0.00 32.62 2.57
1549 1572 0.386352 CGGAGCACGTGAGTTCGTAA 60.386 55.000 22.23 0.00 46.40 3.18
1585 1608 8.204160 TCAAGAAAGTCATCAAGAAGTACAAGA 58.796 33.333 0.00 0.00 0.00 3.02
1649 1672 1.483415 TGCCGAGGAATGTAAGGTACC 59.517 52.381 2.73 2.73 0.00 3.34
1713 1737 0.905809 TGCAACCCCGAGTAGCCTAA 60.906 55.000 0.00 0.00 0.00 2.69
1855 1880 1.407258 GTTTGCACCACCAGTTTGCTA 59.593 47.619 0.00 0.00 37.16 3.49
1966 1995 5.750067 GCTGTTTGCTTCTTCTTTTTCATCA 59.250 36.000 0.00 0.00 38.95 3.07
1973 2002 8.225603 TGCTTCTTCTTTTTCATCACTAACTT 57.774 30.769 0.00 0.00 0.00 2.66
1984 2013 2.522185 TCACTAACTTCACCGGCTAGT 58.478 47.619 0.00 0.00 0.00 2.57
2126 2157 2.411748 CACGGAAATATACGCGATGCAT 59.588 45.455 15.93 0.00 0.00 3.96
2134 2165 6.968131 AATATACGCGATGCATAGTCATTT 57.032 33.333 15.93 0.00 0.00 2.32
2170 2201 6.260936 GGCATATTTCAGTACAGCTAACATGT 59.739 38.462 0.00 0.00 34.62 3.21
2201 2232 1.531149 ACAAAGAACACGGCAGATTCG 59.469 47.619 0.00 0.00 0.00 3.34
2379 2413 7.633621 CAGATTAAGTACACATAACATGGCAG 58.366 38.462 0.00 0.00 33.60 4.85
2380 2414 7.495606 CAGATTAAGTACACATAACATGGCAGA 59.504 37.037 0.00 0.00 33.60 4.26
2381 2415 8.213679 AGATTAAGTACACATAACATGGCAGAT 58.786 33.333 0.00 0.00 33.60 2.90
2382 2416 7.786178 TTAAGTACACATAACATGGCAGATC 57.214 36.000 0.00 0.00 33.60 2.75
2383 2417 5.620738 AGTACACATAACATGGCAGATCT 57.379 39.130 0.00 0.00 33.60 2.75
2384 2418 6.731292 AGTACACATAACATGGCAGATCTA 57.269 37.500 0.00 0.00 33.60 1.98
2385 2419 6.753180 AGTACACATAACATGGCAGATCTAG 58.247 40.000 0.00 0.00 33.60 2.43
2386 2420 5.620738 ACACATAACATGGCAGATCTAGT 57.379 39.130 0.00 0.00 33.60 2.57
2387 2421 6.731292 ACACATAACATGGCAGATCTAGTA 57.269 37.500 0.00 0.00 33.60 1.82
2388 2422 7.308450 ACACATAACATGGCAGATCTAGTAT 57.692 36.000 0.00 0.00 33.60 2.12
2389 2423 8.422577 ACACATAACATGGCAGATCTAGTATA 57.577 34.615 0.00 0.00 33.60 1.47
2390 2424 8.870116 ACACATAACATGGCAGATCTAGTATAA 58.130 33.333 0.00 0.00 33.60 0.98
2391 2425 9.881649 CACATAACATGGCAGATCTAGTATAAT 57.118 33.333 0.00 0.00 33.60 1.28
2399 2433 9.896645 ATGGCAGATCTAGTATAATTAACATGG 57.103 33.333 0.00 0.00 0.00 3.66
2400 2434 7.824289 TGGCAGATCTAGTATAATTAACATGGC 59.176 37.037 0.00 0.00 0.00 4.40
2401 2435 7.824289 GGCAGATCTAGTATAATTAACATGGCA 59.176 37.037 0.00 0.00 0.00 4.92
2402 2436 8.877779 GCAGATCTAGTATAATTAACATGGCAG 58.122 37.037 0.00 0.00 0.00 4.85
2405 2439 9.372369 GATCTAGTATAATTAACATGGCAGACC 57.628 37.037 0.00 0.00 0.00 3.85
2406 2440 7.676947 TCTAGTATAATTAACATGGCAGACCC 58.323 38.462 0.00 0.00 33.59 4.46
2415 2449 2.925078 TGGCAGACCCAGTATACCC 58.075 57.895 0.00 0.00 39.18 3.69
2416 2450 0.043485 TGGCAGACCCAGTATACCCA 59.957 55.000 0.00 0.00 39.18 4.51
2417 2451 1.345009 TGGCAGACCCAGTATACCCAT 60.345 52.381 0.00 0.00 39.18 4.00
2418 2452 1.072331 GGCAGACCCAGTATACCCATG 59.928 57.143 0.00 0.00 0.00 3.66
2419 2453 1.072331 GCAGACCCAGTATACCCATGG 59.928 57.143 4.14 4.14 0.00 3.66
2420 2454 2.408565 CAGACCCAGTATACCCATGGT 58.591 52.381 11.73 1.30 40.16 3.55
2421 2455 3.583228 CAGACCCAGTATACCCATGGTA 58.417 50.000 11.73 3.74 42.80 3.25
2422 2456 3.578716 CAGACCCAGTATACCCATGGTAG 59.421 52.174 11.73 0.00 41.83 3.18
2423 2457 3.469771 AGACCCAGTATACCCATGGTAGA 59.530 47.826 11.73 0.00 41.83 2.59
2424 2458 4.109765 AGACCCAGTATACCCATGGTAGAT 59.890 45.833 11.73 3.27 41.83 1.98
2425 2459 4.426704 ACCCAGTATACCCATGGTAGATC 58.573 47.826 11.73 0.00 41.83 2.75
2426 2460 3.775316 CCCAGTATACCCATGGTAGATCC 59.225 52.174 11.73 0.00 41.83 3.36
2444 2478 9.331282 GGTAGATCCAGTATAAAATATCATGGC 57.669 37.037 0.00 0.00 35.97 4.40
2445 2479 9.890629 GTAGATCCAGTATAAAATATCATGGCA 57.109 33.333 0.00 0.00 0.00 4.92
2468 2502 9.191995 GGCATATTTAGTACAAAATAACATGGC 57.808 33.333 0.00 0.99 35.52 4.40
2469 2503 9.743057 GCATATTTAGTACAAAATAACATGGCA 57.257 29.630 0.00 0.00 35.52 4.92
2477 2511 9.243105 AGTACAAAATAACATGGCAGATTAAGT 57.757 29.630 0.00 0.00 0.00 2.24
2480 2514 9.019656 ACAAAATAACATGGCAGATTAAGTACA 57.980 29.630 0.00 0.00 0.00 2.90
2481 2515 9.289303 CAAAATAACATGGCAGATTAAGTACAC 57.711 33.333 0.00 0.00 0.00 2.90
2482 2516 8.574251 AAATAACATGGCAGATTAAGTACACA 57.426 30.769 0.00 0.00 0.00 3.72
2483 2517 8.752005 AATAACATGGCAGATTAAGTACACAT 57.248 30.769 0.00 0.00 0.00 3.21
2484 2518 9.845740 AATAACATGGCAGATTAAGTACACATA 57.154 29.630 0.00 0.00 0.00 2.29
2485 2519 9.845740 ATAACATGGCAGATTAAGTACACATAA 57.154 29.630 0.00 0.00 0.00 1.90
2486 2520 7.553881 ACATGGCAGATTAAGTACACATAAC 57.446 36.000 0.00 0.00 0.00 1.89
2487 2521 7.109501 ACATGGCAGATTAAGTACACATAACA 58.890 34.615 0.00 0.00 0.00 2.41
2488 2522 7.775093 ACATGGCAGATTAAGTACACATAACAT 59.225 33.333 0.00 0.00 0.00 2.71
2489 2523 7.552458 TGGCAGATTAAGTACACATAACATG 57.448 36.000 0.00 0.00 0.00 3.21
2490 2524 6.542005 TGGCAGATTAAGTACACATAACATGG 59.458 38.462 0.00 0.00 33.60 3.66
2491 2525 6.430451 GCAGATTAAGTACACATAACATGGC 58.570 40.000 0.00 0.00 33.60 4.40
2492 2526 6.038161 GCAGATTAAGTACACATAACATGGCA 59.962 38.462 0.00 0.00 33.60 4.92
2493 2527 7.415095 GCAGATTAAGTACACATAACATGGCAA 60.415 37.037 0.00 0.00 33.60 4.52
2494 2528 7.910162 CAGATTAAGTACACATAACATGGCAAC 59.090 37.037 0.00 0.00 33.60 4.17
2495 2529 7.829211 AGATTAAGTACACATAACATGGCAACT 59.171 33.333 0.00 0.00 37.61 3.16
2496 2530 9.104965 GATTAAGTACACATAACATGGCAACTA 57.895 33.333 0.00 0.00 37.61 2.24
2497 2531 6.737254 AAGTACACATAACATGGCAACTAC 57.263 37.500 0.00 0.00 37.61 2.73
2498 2532 5.800296 AGTACACATAACATGGCAACTACA 58.200 37.500 0.00 0.00 37.61 2.74
2499 2533 5.874810 AGTACACATAACATGGCAACTACAG 59.125 40.000 0.00 0.00 37.61 2.74
2500 2534 4.651778 ACACATAACATGGCAACTACAGT 58.348 39.130 0.00 0.00 37.61 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.339929 GGGCACGTTGGAACTTGATTT 59.660 47.619 0.48 0.00 30.49 2.17
68 69 3.785887 TGGCACTCCTAATGGTATCCTTT 59.214 43.478 0.00 0.00 34.23 3.11
69 70 3.136626 GTGGCACTCCTAATGGTATCCTT 59.863 47.826 11.13 0.00 34.23 3.36
117 118 0.912486 GCAGGAGGTGGGTGAACTAT 59.088 55.000 0.00 0.00 0.00 2.12
150 151 0.181587 TTTGTGGCCTTGACTTCGGA 59.818 50.000 3.32 0.00 0.00 4.55
207 208 0.609957 CTGCTGGCCCTCACATTTCA 60.610 55.000 0.00 0.00 0.00 2.69
324 327 7.709613 AGAACTAAAACGTAAGCGGATCATATT 59.290 33.333 0.00 0.00 43.45 1.28
477 483 0.759959 TTTTACCGAGTGGCCTCACA 59.240 50.000 3.32 0.00 45.91 3.58
500 506 1.393196 CGCATGCAACTACATTCGTCA 59.607 47.619 19.57 0.00 33.00 4.35
650 656 3.111853 TCACTGTGAGCTTGAATTCGT 57.888 42.857 6.36 0.00 0.00 3.85
651 657 3.742882 TCTTCACTGTGAGCTTGAATTCG 59.257 43.478 10.77 0.00 0.00 3.34
837 853 6.972722 TGAACAAAGTTTCCCCGTATTTTAG 58.027 36.000 0.00 0.00 0.00 1.85
846 862 4.770010 TCCATGTATGAACAAAGTTTCCCC 59.230 41.667 0.00 0.00 39.58 4.81
850 866 4.320935 GCCGTCCATGTATGAACAAAGTTT 60.321 41.667 0.00 0.00 39.58 2.66
930 951 3.321682 CACATGAAGAACAACAATGGGGT 59.678 43.478 0.00 0.00 0.00 4.95
931 952 3.573538 TCACATGAAGAACAACAATGGGG 59.426 43.478 0.00 0.00 0.00 4.96
935 956 6.732154 CAGAGTTCACATGAAGAACAACAAT 58.268 36.000 25.92 12.96 45.93 2.71
999 1020 0.593128 GTGCAAGCTCGTGGAACATT 59.407 50.000 0.00 0.00 44.52 2.71
1008 1029 1.499056 GTCATGTGGTGCAAGCTCG 59.501 57.895 0.00 0.00 33.76 5.03
1059 1080 5.415701 GCATTGGTTCTTCAGGTCAAGATAA 59.584 40.000 0.00 0.00 32.32 1.75
1061 1082 3.760684 GCATTGGTTCTTCAGGTCAAGAT 59.239 43.478 0.00 0.00 32.32 2.40
1123 1144 3.328382 TTCAGCATGCGTAGTAAGGTT 57.672 42.857 13.01 0.00 34.76 3.50
1203 1224 7.822334 ACGTACTCAATTGGAAAATGTCTGATA 59.178 33.333 5.42 0.00 0.00 2.15
1284 1305 3.141272 AGAGGGGTGGGATTTGTGTAAAA 59.859 43.478 0.00 0.00 0.00 1.52
1292 1313 3.344535 ACAAAAAGAGGGGTGGGATTT 57.655 42.857 0.00 0.00 0.00 2.17
1497 1520 7.647228 TGTTGAAATCTTCATTCGTCAATCAA 58.353 30.769 0.00 0.00 39.84 2.57
1500 1523 6.583806 GCTTGTTGAAATCTTCATTCGTCAAT 59.416 34.615 0.00 0.00 39.84 2.57
1549 1572 4.156455 TGACTTTCTTGACAGCTTCCTT 57.844 40.909 0.00 0.00 0.00 3.36
1585 1608 3.312799 TGGAGCGCCACATGATCT 58.687 55.556 4.49 0.00 39.92 2.75
1649 1672 7.707104 ACATAGTTTTGAGAAGAACAAAGGTG 58.293 34.615 0.00 0.00 38.25 4.00
1713 1737 3.369471 GCTCACACACCACCACTACATAT 60.369 47.826 0.00 0.00 0.00 1.78
1966 1995 3.383825 CCATACTAGCCGGTGAAGTTAGT 59.616 47.826 1.90 4.92 0.00 2.24
1973 2002 2.742428 ACTACCATACTAGCCGGTGA 57.258 50.000 1.90 0.00 34.12 4.02
1984 2013 5.069914 ACGGCTACATGATCAAACTACCATA 59.930 40.000 0.00 0.00 0.00 2.74
2134 2165 9.183368 TGTACTGAAATATGCCATGTTATTTGA 57.817 29.630 9.14 2.83 30.25 2.69
2170 2201 4.988540 CCGTGTTCTTTGTACTGAATCTGA 59.011 41.667 0.00 0.00 0.00 3.27
2201 2232 3.491447 GGATCTGCCATGTTGTTTATGCC 60.491 47.826 0.00 0.00 36.34 4.40
2325 2359 8.518430 TGTTATGTGTATTTAATCTGCCATGT 57.482 30.769 0.00 0.00 0.00 3.21
2379 2413 9.372369 GGTCTGCCATGTTAATTATACTAGATC 57.628 37.037 0.00 0.00 34.09 2.75
2380 2414 8.322091 GGGTCTGCCATGTTAATTATACTAGAT 58.678 37.037 0.00 0.00 36.17 1.98
2381 2415 7.291416 TGGGTCTGCCATGTTAATTATACTAGA 59.709 37.037 0.00 0.00 36.17 2.43
2382 2416 7.450074 TGGGTCTGCCATGTTAATTATACTAG 58.550 38.462 0.00 0.00 36.17 2.57
2383 2417 7.071950 ACTGGGTCTGCCATGTTAATTATACTA 59.928 37.037 0.00 0.00 36.17 1.82
2384 2418 6.126478 ACTGGGTCTGCCATGTTAATTATACT 60.126 38.462 0.00 0.00 36.17 2.12
2385 2419 6.062095 ACTGGGTCTGCCATGTTAATTATAC 58.938 40.000 0.00 0.00 36.17 1.47
2386 2420 6.260700 ACTGGGTCTGCCATGTTAATTATA 57.739 37.500 0.00 0.00 36.17 0.98
2387 2421 5.129368 ACTGGGTCTGCCATGTTAATTAT 57.871 39.130 0.00 0.00 36.17 1.28
2388 2422 4.584638 ACTGGGTCTGCCATGTTAATTA 57.415 40.909 0.00 0.00 36.17 1.40
2389 2423 3.456380 ACTGGGTCTGCCATGTTAATT 57.544 42.857 0.00 0.00 36.17 1.40
2390 2424 4.796110 ATACTGGGTCTGCCATGTTAAT 57.204 40.909 0.00 0.00 36.17 1.40
2391 2425 4.141574 GGTATACTGGGTCTGCCATGTTAA 60.142 45.833 2.25 0.00 36.17 2.01
2392 2426 3.389983 GGTATACTGGGTCTGCCATGTTA 59.610 47.826 2.25 0.00 36.17 2.41
2393 2427 2.172717 GGTATACTGGGTCTGCCATGTT 59.827 50.000 2.25 0.00 36.17 2.71
2394 2428 1.768870 GGTATACTGGGTCTGCCATGT 59.231 52.381 2.25 0.00 36.17 3.21
2395 2429 1.072331 GGGTATACTGGGTCTGCCATG 59.928 57.143 2.25 0.00 36.17 3.66
2396 2430 1.345009 TGGGTATACTGGGTCTGCCAT 60.345 52.381 2.25 0.00 36.17 4.40
2397 2431 0.043485 TGGGTATACTGGGTCTGCCA 59.957 55.000 2.25 0.00 36.17 4.92
2398 2432 1.072331 CATGGGTATACTGGGTCTGCC 59.928 57.143 2.25 0.00 0.00 4.85
2399 2433 1.072331 CCATGGGTATACTGGGTCTGC 59.928 57.143 2.85 0.00 0.00 4.26
2400 2434 2.408565 ACCATGGGTATACTGGGTCTG 58.591 52.381 18.09 0.05 32.11 3.51
2401 2435 2.889522 ACCATGGGTATACTGGGTCT 57.110 50.000 18.09 0.00 32.11 3.85
2402 2436 3.853207 TCTACCATGGGTATACTGGGTC 58.147 50.000 18.09 0.00 37.56 4.46
2403 2437 4.426704 GATCTACCATGGGTATACTGGGT 58.573 47.826 18.09 11.93 37.56 4.51
2404 2438 3.775316 GGATCTACCATGGGTATACTGGG 59.225 52.174 18.09 7.55 37.56 4.45
2405 2439 4.425772 TGGATCTACCATGGGTATACTGG 58.574 47.826 18.09 7.85 44.64 4.00
2418 2452 9.331282 GCCATGATATTTTATACTGGATCTACC 57.669 37.037 0.00 0.00 39.54 3.18
2419 2453 9.890629 TGCCATGATATTTTATACTGGATCTAC 57.109 33.333 0.00 0.00 0.00 2.59
2442 2476 9.191995 GCCATGTTATTTTGTACTAAATATGCC 57.808 33.333 18.84 12.36 31.88 4.40
2443 2477 9.743057 TGCCATGTTATTTTGTACTAAATATGC 57.257 29.630 18.84 15.52 31.88 3.14
2451 2485 9.243105 ACTTAATCTGCCATGTTATTTTGTACT 57.757 29.630 0.00 0.00 0.00 2.73
2454 2488 9.019656 TGTACTTAATCTGCCATGTTATTTTGT 57.980 29.630 0.00 0.00 0.00 2.83
2455 2489 9.289303 GTGTACTTAATCTGCCATGTTATTTTG 57.711 33.333 0.00 0.00 0.00 2.44
2456 2490 9.019656 TGTGTACTTAATCTGCCATGTTATTTT 57.980 29.630 0.00 0.00 0.00 1.82
2457 2491 8.574251 TGTGTACTTAATCTGCCATGTTATTT 57.426 30.769 0.00 0.00 0.00 1.40
2458 2492 8.752005 ATGTGTACTTAATCTGCCATGTTATT 57.248 30.769 0.00 0.00 0.00 1.40
2459 2493 9.845740 TTATGTGTACTTAATCTGCCATGTTAT 57.154 29.630 0.00 0.00 0.00 1.89
2460 2494 9.104965 GTTATGTGTACTTAATCTGCCATGTTA 57.895 33.333 0.00 0.00 0.00 2.41
2461 2495 7.609918 TGTTATGTGTACTTAATCTGCCATGTT 59.390 33.333 0.00 0.00 0.00 2.71
2462 2496 7.109501 TGTTATGTGTACTTAATCTGCCATGT 58.890 34.615 0.00 0.00 0.00 3.21
2463 2497 7.552458 TGTTATGTGTACTTAATCTGCCATG 57.448 36.000 0.00 0.00 0.00 3.66
2464 2498 7.229306 CCATGTTATGTGTACTTAATCTGCCAT 59.771 37.037 0.00 0.00 0.00 4.40
2465 2499 6.542005 CCATGTTATGTGTACTTAATCTGCCA 59.458 38.462 0.00 0.00 0.00 4.92
2466 2500 6.513393 GCCATGTTATGTGTACTTAATCTGCC 60.513 42.308 0.00 0.00 0.00 4.85
2467 2501 6.038161 TGCCATGTTATGTGTACTTAATCTGC 59.962 38.462 0.00 0.00 0.00 4.26
2468 2502 7.552458 TGCCATGTTATGTGTACTTAATCTG 57.448 36.000 0.00 0.00 0.00 2.90
2469 2503 7.829211 AGTTGCCATGTTATGTGTACTTAATCT 59.171 33.333 0.00 0.00 0.00 2.40
2470 2504 7.985476 AGTTGCCATGTTATGTGTACTTAATC 58.015 34.615 0.00 0.00 0.00 1.75
2471 2505 7.938140 AGTTGCCATGTTATGTGTACTTAAT 57.062 32.000 0.00 0.00 0.00 1.40
2472 2506 7.878644 TGTAGTTGCCATGTTATGTGTACTTAA 59.121 33.333 0.00 0.00 0.00 1.85
2473 2507 7.387643 TGTAGTTGCCATGTTATGTGTACTTA 58.612 34.615 0.00 0.00 0.00 2.24
2474 2508 6.234920 TGTAGTTGCCATGTTATGTGTACTT 58.765 36.000 0.00 0.00 0.00 2.24
2475 2509 5.800296 TGTAGTTGCCATGTTATGTGTACT 58.200 37.500 0.00 0.00 0.00 2.73
2476 2510 5.642063 ACTGTAGTTGCCATGTTATGTGTAC 59.358 40.000 0.00 0.00 0.00 2.90
2477 2511 5.800296 ACTGTAGTTGCCATGTTATGTGTA 58.200 37.500 0.00 0.00 0.00 2.90
2478 2512 4.651778 ACTGTAGTTGCCATGTTATGTGT 58.348 39.130 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.