Multiple sequence alignment - TraesCS7B01G192500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G192500 chr7B 100.000 3033 0 0 1 3033 330514042 330517074 0.000000e+00 5602.0
1 TraesCS7B01G192500 chr7D 92.973 2291 78 37 1 2280 187196241 187198459 0.000000e+00 3262.0
2 TraesCS7B01G192500 chr7A 91.168 1687 58 21 164 1816 197302455 197300826 0.000000e+00 2206.0
3 TraesCS7B01G192500 chr7A 94.045 487 20 2 1803 2280 197300806 197300320 0.000000e+00 730.0
4 TraesCS7B01G192500 chr7A 93.103 174 8 3 1 171 197303363 197303191 5.020000e-63 252.0
5 TraesCS7B01G192500 chr1B 78.978 509 101 6 2282 2788 584480767 584481271 2.900000e-90 342.0
6 TraesCS7B01G192500 chr6D 100.000 31 0 0 1757 1787 126871617 126871647 1.170000e-04 58.4
7 TraesCS7B01G192500 chr6B 100.000 31 0 0 1757 1787 225868150 225868180 1.170000e-04 58.4
8 TraesCS7B01G192500 chr6A 100.000 31 0 0 1757 1787 152060980 152060950 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G192500 chr7B 330514042 330517074 3032 False 5602.000000 5602 100.000 1 3033 1 chr7B.!!$F1 3032
1 TraesCS7B01G192500 chr7D 187196241 187198459 2218 False 3262.000000 3262 92.973 1 2280 1 chr7D.!!$F1 2279
2 TraesCS7B01G192500 chr7A 197300320 197303363 3043 True 1062.666667 2206 92.772 1 2280 3 chr7A.!!$R1 2279
3 TraesCS7B01G192500 chr1B 584480767 584481271 504 False 342.000000 342 78.978 2282 2788 1 chr1B.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 1528 0.179097 GATCAGAGAACGCAGGGGAC 60.179 60.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 3284 0.110486 AGTTTCGCATGGACTGGGTT 59.89 50.0 0.0 0.0 38.84 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.839124 TTGCAGGAAAACACAAGATCATAT 57.161 33.333 0.00 0.00 0.00 1.78
136 140 0.374758 CGGCGTTCATGTCATCCTTG 59.625 55.000 0.00 0.00 0.00 3.61
258 1005 4.999751 AAGATCGACTGCAAGAAGAAAC 57.000 40.909 0.00 0.00 37.43 2.78
277 1024 7.455641 AGAAACTAGTCTCTCTTCGATTTGA 57.544 36.000 0.00 0.00 0.00 2.69
354 1106 5.220303 GCACTGAGAAGAAAACTATAGCACG 60.220 44.000 0.00 0.00 0.00 5.34
411 1186 0.961019 GCAGTGCAAAGATTCCCACA 59.039 50.000 11.09 0.00 0.00 4.17
487 1262 4.159135 GCCCACTTCTGTTCATCATTCAAT 59.841 41.667 0.00 0.00 0.00 2.57
561 1339 1.226030 GGACTACAACACCCGTGCAC 61.226 60.000 6.82 6.82 0.00 4.57
563 1341 1.593209 CTACAACACCCGTGCACGT 60.593 57.895 34.81 17.45 37.74 4.49
564 1342 1.827315 CTACAACACCCGTGCACGTG 61.827 60.000 34.81 28.81 37.74 4.49
745 1525 4.409342 CGATCAGAGAACGCAGGG 57.591 61.111 0.00 0.00 0.00 4.45
746 1526 1.227089 CGATCAGAGAACGCAGGGG 60.227 63.158 0.00 0.00 0.00 4.79
747 1527 1.667154 CGATCAGAGAACGCAGGGGA 61.667 60.000 0.00 0.00 0.00 4.81
748 1528 0.179097 GATCAGAGAACGCAGGGGAC 60.179 60.000 0.00 0.00 0.00 4.46
749 1529 1.949847 ATCAGAGAACGCAGGGGACG 61.950 60.000 0.00 0.00 0.00 4.79
750 1530 4.070552 AGAGAACGCAGGGGACGC 62.071 66.667 0.00 0.00 0.00 5.19
751 1531 4.373116 GAGAACGCAGGGGACGCA 62.373 66.667 0.00 0.00 0.00 5.24
784 1564 2.949451 AGCACAGTCGAAGATACCAG 57.051 50.000 0.00 0.00 40.67 4.00
814 1594 4.781959 CCCAATGGCTTGTGCGCG 62.782 66.667 0.00 0.00 40.82 6.86
855 1635 1.586154 CCGGCGGCATTTGGATATCC 61.586 60.000 15.42 15.39 0.00 2.59
944 1724 1.869690 GCACGCCTGTTCTTCTTCC 59.130 57.895 0.00 0.00 0.00 3.46
1065 1845 4.648626 AGCCTGCTTGCGCCTTCA 62.649 61.111 4.18 0.00 36.02 3.02
1204 1984 0.250727 GCCAGGGTGACTAAGCAACA 60.251 55.000 0.00 0.00 0.00 3.33
1206 1986 2.582052 CCAGGGTGACTAAGCAACAAA 58.418 47.619 0.00 0.00 0.00 2.83
1207 1987 2.554032 CCAGGGTGACTAAGCAACAAAG 59.446 50.000 0.00 0.00 0.00 2.77
1208 1988 2.030805 CAGGGTGACTAAGCAACAAAGC 60.031 50.000 0.00 0.00 0.00 3.51
1210 1990 3.072476 AGGGTGACTAAGCAACAAAGCTA 59.928 43.478 0.00 0.00 45.89 3.32
1211 1991 3.437049 GGGTGACTAAGCAACAAAGCTAG 59.563 47.826 0.00 0.00 45.89 3.42
1212 1992 3.120165 GGTGACTAAGCAACAAAGCTAGC 60.120 47.826 6.62 6.62 45.89 3.42
1213 1993 3.748568 GTGACTAAGCAACAAAGCTAGCT 59.251 43.478 12.68 12.68 45.89 3.32
1214 1994 4.929808 GTGACTAAGCAACAAAGCTAGCTA 59.070 41.667 19.70 0.00 45.89 3.32
1215 1995 5.062809 GTGACTAAGCAACAAAGCTAGCTAG 59.937 44.000 19.70 16.84 45.89 3.42
1216 1996 3.935828 ACTAAGCAACAAAGCTAGCTAGC 59.064 43.478 33.96 33.96 45.89 3.42
1245 2025 0.179100 CCGATCGAGCAGTGACCAAT 60.179 55.000 18.66 0.00 0.00 3.16
1247 2027 1.203928 GATCGAGCAGTGACCAATCG 58.796 55.000 0.00 0.00 34.80 3.34
1249 2029 0.109272 TCGAGCAGTGACCAATCGAC 60.109 55.000 0.00 0.00 37.48 4.20
1250 2030 0.109086 CGAGCAGTGACCAATCGACT 60.109 55.000 0.00 0.00 35.47 4.18
1251 2031 1.634702 GAGCAGTGACCAATCGACTC 58.365 55.000 0.00 0.00 0.00 3.36
1253 2033 0.109272 GCAGTGACCAATCGACTCGA 60.109 55.000 3.06 3.06 41.13 4.04
1254 2034 1.618861 CAGTGACCAATCGACTCGAC 58.381 55.000 2.53 0.00 39.18 4.20
1255 2035 1.068541 CAGTGACCAATCGACTCGACA 60.069 52.381 2.53 0.00 39.18 4.35
1256 2036 1.819288 AGTGACCAATCGACTCGACAT 59.181 47.619 2.53 0.00 39.18 3.06
1257 2037 2.159366 AGTGACCAATCGACTCGACATC 60.159 50.000 2.53 0.26 39.18 3.06
1258 2038 1.816224 TGACCAATCGACTCGACATCA 59.184 47.619 2.53 2.85 39.18 3.07
1276 2056 0.652592 CAATCAATCTGACCGGCGAC 59.347 55.000 9.30 2.28 0.00 5.19
1280 2060 1.754803 TCAATCTGACCGGCGACTTAT 59.245 47.619 9.30 0.00 0.00 1.73
1281 2061 2.953648 TCAATCTGACCGGCGACTTATA 59.046 45.455 9.30 0.00 0.00 0.98
1288 2070 1.617357 ACCGGCGACTTATATTCTCCC 59.383 52.381 9.30 0.00 0.00 4.30
1289 2071 1.067071 CCGGCGACTTATATTCTCCCC 60.067 57.143 9.30 0.00 0.00 4.81
1454 2239 3.314553 TGTTGAGTTGTTCGCTAGTAGC 58.685 45.455 12.41 12.41 38.02 3.58
1469 2254 4.261197 GCTAGTAGCAATAACATGGGTTGC 60.261 45.833 17.47 18.48 46.37 4.17
1471 2256 2.664567 GCAATAACATGGGTTGCGC 58.335 52.632 13.63 0.00 38.83 6.09
1472 2257 0.805711 GCAATAACATGGGTTGCGCC 60.806 55.000 4.18 0.00 38.83 6.53
1473 2258 0.525242 CAATAACATGGGTTGCGCCG 60.525 55.000 4.18 0.00 37.88 6.46
1474 2259 0.963355 AATAACATGGGTTGCGCCGT 60.963 50.000 4.18 0.00 37.88 5.68
1475 2260 0.107606 ATAACATGGGTTGCGCCGTA 60.108 50.000 4.18 0.00 37.88 4.02
1476 2261 1.020333 TAACATGGGTTGCGCCGTAC 61.020 55.000 4.18 0.00 37.88 3.67
1505 2290 3.702048 GACGTGCAGCCTGGGGTA 61.702 66.667 0.00 0.00 0.00 3.69
1748 2533 2.528127 TTCTCCAAGGACCCCGCA 60.528 61.111 0.00 0.00 0.00 5.69
2074 2892 3.219928 GATCGAGGAGCCGGAGCA 61.220 66.667 5.05 0.00 43.56 4.26
2108 2938 1.007011 CATGTTTCTGCGTCGATCGAC 60.007 52.381 33.22 33.22 42.86 4.20
2117 2947 1.467875 CGTCGATCGACTGGTTGATC 58.532 55.000 37.12 15.06 43.72 2.92
2118 2948 1.202143 CGTCGATCGACTGGTTGATCA 60.202 52.381 37.12 3.69 46.19 2.92
2119 2949 2.731027 CGTCGATCGACTGGTTGATCAA 60.731 50.000 37.12 3.38 46.19 2.57
2179 3009 3.530265 AGGAACTGTACAACAACGTCA 57.470 42.857 0.00 0.00 37.18 4.35
2228 3058 5.404946 TGTGTAAAGCTTAAGTAGTAGCCG 58.595 41.667 0.00 0.00 38.14 5.52
2243 3073 1.730547 GCCGCTGTTGTGAATGCAC 60.731 57.895 0.00 0.00 45.35 4.57
2280 3111 4.978083 AAACTCTTGCATGATGATGGTC 57.022 40.909 2.33 0.00 0.00 4.02
2281 3112 3.928005 ACTCTTGCATGATGATGGTCT 57.072 42.857 2.33 0.00 0.00 3.85
2282 3113 4.232188 ACTCTTGCATGATGATGGTCTT 57.768 40.909 2.33 0.00 0.00 3.01
2283 3114 4.597004 ACTCTTGCATGATGATGGTCTTT 58.403 39.130 2.33 0.00 0.00 2.52
2284 3115 5.014858 ACTCTTGCATGATGATGGTCTTTT 58.985 37.500 2.33 0.00 0.00 2.27
2285 3116 5.479375 ACTCTTGCATGATGATGGTCTTTTT 59.521 36.000 2.33 0.00 0.00 1.94
2286 3117 5.957798 TCTTGCATGATGATGGTCTTTTTC 58.042 37.500 0.00 0.00 0.00 2.29
2287 3118 5.713389 TCTTGCATGATGATGGTCTTTTTCT 59.287 36.000 0.00 0.00 0.00 2.52
2288 3119 5.988310 TGCATGATGATGGTCTTTTTCTT 57.012 34.783 0.00 0.00 0.00 2.52
2289 3120 5.716094 TGCATGATGATGGTCTTTTTCTTG 58.284 37.500 0.00 0.00 0.00 3.02
2344 3175 3.005554 CGAAGCTGGAAATGTCATCAGT 58.994 45.455 0.00 0.00 0.00 3.41
2354 3185 7.167535 TGGAAATGTCATCAGTGATTACAGAA 58.832 34.615 21.35 3.05 36.60 3.02
2359 3190 7.658179 TGTCATCAGTGATTACAGAAAGAAC 57.342 36.000 14.74 0.00 36.60 3.01
2363 3194 8.777413 TCATCAGTGATTACAGAAAGAACAAAG 58.223 33.333 1.86 0.00 0.00 2.77
2372 3203 3.817647 CAGAAAGAACAAAGTCAGGGGAG 59.182 47.826 0.00 0.00 0.00 4.30
2373 3204 3.716872 AGAAAGAACAAAGTCAGGGGAGA 59.283 43.478 0.00 0.00 0.00 3.71
2374 3205 3.493767 AAGAACAAAGTCAGGGGAGAC 57.506 47.619 0.00 0.00 38.81 3.36
2386 3217 4.494515 GGAGACCCCAAACCACAC 57.505 61.111 0.00 0.00 34.14 3.82
2400 3231 5.181245 CCAAACCACACCTTACATAACTCAG 59.819 44.000 0.00 0.00 0.00 3.35
2408 3239 3.055094 CCTTACATAACTCAGCACCCACT 60.055 47.826 0.00 0.00 0.00 4.00
2414 3245 0.905337 ACTCAGCACCCACTCCTACC 60.905 60.000 0.00 0.00 0.00 3.18
2417 3248 0.693049 CAGCACCCACTCCTACCTTT 59.307 55.000 0.00 0.00 0.00 3.11
2420 3251 0.673644 CACCCACTCCTACCTTTGCG 60.674 60.000 0.00 0.00 0.00 4.85
2435 3266 3.860125 GCGAACTTATGCGCGGCA 61.860 61.111 8.83 7.01 43.96 5.69
2450 3281 2.051345 GCAACGTTGGCAGAACGG 60.051 61.111 28.33 1.15 46.86 4.44
2453 3284 4.595538 ACGTTGGCAGAACGGCGA 62.596 61.111 16.62 0.00 46.86 5.54
2459 3290 3.423154 GCAGAACGGCGAACCCAG 61.423 66.667 16.62 0.00 0.00 4.45
2464 3295 2.798148 GAACGGCGAACCCAGTCCAT 62.798 60.000 16.62 0.00 0.00 3.41
2465 3296 2.819595 CGGCGAACCCAGTCCATG 60.820 66.667 0.00 0.00 0.00 3.66
2471 3302 0.521735 GAACCCAGTCCATGCGAAAC 59.478 55.000 0.00 0.00 0.00 2.78
2472 3303 0.110486 AACCCAGTCCATGCGAAACT 59.890 50.000 0.00 0.00 0.00 2.66
2477 3308 0.670546 AGTCCATGCGAAACTCCACG 60.671 55.000 0.00 0.00 0.00 4.94
2485 3316 1.664965 GAAACTCCACGCACGAGCT 60.665 57.895 2.73 0.00 39.10 4.09
2486 3317 1.891060 GAAACTCCACGCACGAGCTG 61.891 60.000 2.73 0.56 39.10 4.24
2513 3344 6.458070 GCAGCTCTTTAATCTCTTGAATCCAC 60.458 42.308 0.00 0.00 0.00 4.02
2519 3350 0.909610 TCTCTTGAATCCACGGCCCT 60.910 55.000 0.00 0.00 0.00 5.19
2527 3358 2.536997 ATCCACGGCCCTACAACAGC 62.537 60.000 0.00 0.00 0.00 4.40
2528 3359 2.746277 CACGGCCCTACAACAGCC 60.746 66.667 0.00 0.00 43.53 4.85
2535 3366 0.958822 CCCTACAACAGCCAAACACC 59.041 55.000 0.00 0.00 0.00 4.16
2537 3368 2.306847 CCTACAACAGCCAAACACCTT 58.693 47.619 0.00 0.00 0.00 3.50
2543 3374 1.064017 ACAGCCAAACACCTTTCAGGA 60.064 47.619 0.00 0.00 37.67 3.86
2544 3375 2.031120 CAGCCAAACACCTTTCAGGAA 58.969 47.619 0.00 0.00 37.67 3.36
2547 3378 2.031120 CCAAACACCTTTCAGGAAGCA 58.969 47.619 0.00 0.00 37.67 3.91
2548 3379 2.629617 CCAAACACCTTTCAGGAAGCAT 59.370 45.455 0.00 0.00 37.67 3.79
2549 3380 3.305608 CCAAACACCTTTCAGGAAGCATC 60.306 47.826 0.00 0.00 37.67 3.91
2551 3382 3.228188 ACACCTTTCAGGAAGCATCAA 57.772 42.857 0.00 0.00 37.67 2.57
2553 3384 2.886523 CACCTTTCAGGAAGCATCAACA 59.113 45.455 0.00 0.00 37.67 3.33
2564 3395 1.687660 AGCATCAACATTTGCACCACA 59.312 42.857 0.00 0.00 41.35 4.17
2566 3397 2.063266 CATCAACATTTGCACCACAGC 58.937 47.619 0.00 0.00 0.00 4.40
2582 3413 2.033141 GCCTTGCTGTGGAGCTCA 59.967 61.111 17.19 0.00 46.39 4.26
2585 3416 0.035881 CCTTGCTGTGGAGCTCAAGA 59.964 55.000 17.19 0.83 46.39 3.02
2591 3422 1.554160 CTGTGGAGCTCAAGATGGACT 59.446 52.381 17.19 0.00 0.00 3.85
2597 3428 0.174389 GCTCAAGATGGACTCGCTGA 59.826 55.000 0.00 0.00 0.00 4.26
2604 3435 1.488705 ATGGACTCGCTGAACCCCAA 61.489 55.000 0.00 0.00 0.00 4.12
2605 3436 1.376037 GGACTCGCTGAACCCCAAG 60.376 63.158 0.00 0.00 0.00 3.61
2606 3437 1.371558 GACTCGCTGAACCCCAAGT 59.628 57.895 0.00 0.00 0.00 3.16
2619 3450 1.035139 CCCAAGTTCAACTGCAAGCT 58.965 50.000 0.00 0.00 37.60 3.74
2636 3467 4.992740 TGCAAACCCCGCCTGCAT 62.993 61.111 0.00 0.00 41.01 3.96
2639 3470 4.684134 AAACCCCGCCTGCATGCT 62.684 61.111 20.33 0.00 0.00 3.79
2647 3478 1.590932 CGCCTGCATGCTAGAATCTT 58.409 50.000 20.33 0.00 0.00 2.40
2650 3481 2.686915 GCCTGCATGCTAGAATCTTTGT 59.313 45.455 20.33 0.00 0.00 2.83
2651 3482 3.879295 GCCTGCATGCTAGAATCTTTGTA 59.121 43.478 20.33 0.00 0.00 2.41
2660 3491 4.813697 GCTAGAATCTTTGTAGCTTCAGGG 59.186 45.833 8.64 0.00 45.90 4.45
2663 3494 4.287067 AGAATCTTTGTAGCTTCAGGGTCA 59.713 41.667 0.00 0.00 30.63 4.02
2665 3496 2.972713 TCTTTGTAGCTTCAGGGTCAGT 59.027 45.455 0.00 0.00 0.00 3.41
2666 3497 4.157246 TCTTTGTAGCTTCAGGGTCAGTA 58.843 43.478 0.00 0.00 0.00 2.74
2671 3502 4.286032 TGTAGCTTCAGGGTCAGTAATGTT 59.714 41.667 0.00 0.00 0.00 2.71
2672 3503 4.373156 AGCTTCAGGGTCAGTAATGTTT 57.627 40.909 0.00 0.00 0.00 2.83
2675 3506 3.433306 TCAGGGTCAGTAATGTTTGGG 57.567 47.619 0.00 0.00 0.00 4.12
2685 3516 7.084486 GTCAGTAATGTTTGGGAGAAAATGAC 58.916 38.462 0.00 0.00 0.00 3.06
2693 3524 2.978978 TGGGAGAAAATGACTCACTCCA 59.021 45.455 13.02 0.00 46.00 3.86
2697 3528 2.087646 GAAAATGACTCACTCCAGCCC 58.912 52.381 0.00 0.00 0.00 5.19
2698 3529 1.366319 AAATGACTCACTCCAGCCCT 58.634 50.000 0.00 0.00 0.00 5.19
2699 3530 2.254152 AATGACTCACTCCAGCCCTA 57.746 50.000 0.00 0.00 0.00 3.53
2704 3535 2.303311 GACTCACTCCAGCCCTAAAAGT 59.697 50.000 0.00 0.00 0.00 2.66
2705 3536 2.039084 ACTCACTCCAGCCCTAAAAGTG 59.961 50.000 0.00 0.00 38.91 3.16
2709 3540 0.704076 TCCAGCCCTAAAAGTGCCAT 59.296 50.000 0.00 0.00 0.00 4.40
2710 3541 1.077005 TCCAGCCCTAAAAGTGCCATT 59.923 47.619 0.00 0.00 0.00 3.16
2711 3542 1.205417 CCAGCCCTAAAAGTGCCATTG 59.795 52.381 0.00 0.00 0.00 2.82
2714 3545 1.066929 GCCCTAAAAGTGCCATTGTGG 60.067 52.381 0.00 0.00 41.55 4.17
2717 3548 3.157087 CCTAAAAGTGCCATTGTGGTCT 58.843 45.455 0.00 0.00 40.46 3.85
2738 3569 1.915769 AAGCACCGCTTCTCCTCCT 60.916 57.895 0.00 0.00 46.77 3.69
2741 3572 2.364448 ACCGCTTCTCCTCCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
2745 3576 1.261238 CGCTTCTCCTCCTCCCTTGT 61.261 60.000 0.00 0.00 0.00 3.16
2746 3577 0.988063 GCTTCTCCTCCTCCCTTGTT 59.012 55.000 0.00 0.00 0.00 2.83
2747 3578 1.065782 GCTTCTCCTCCTCCCTTGTTC 60.066 57.143 0.00 0.00 0.00 3.18
2750 3581 0.252927 CTCCTCCTCCCTTGTTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
2751 3582 0.196118 TCCTCCTCCCTTGTTCCCTT 59.804 55.000 0.00 0.00 0.00 3.95
2754 3585 1.304464 CCTCCCTTGTTCCCTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
2756 3587 0.113190 CTCCCTTGTTCCCTTGCCTT 59.887 55.000 0.00 0.00 0.00 4.35
2759 3590 1.703411 CCTTGTTCCCTTGCCTTGAA 58.297 50.000 0.00 0.00 0.00 2.69
2761 3592 2.634453 CCTTGTTCCCTTGCCTTGAAAT 59.366 45.455 0.00 0.00 0.00 2.17
2762 3593 3.831911 CCTTGTTCCCTTGCCTTGAAATA 59.168 43.478 0.00 0.00 0.00 1.40
2764 3595 4.112634 TGTTCCCTTGCCTTGAAATAGT 57.887 40.909 0.00 0.00 0.00 2.12
2765 3596 5.249780 TGTTCCCTTGCCTTGAAATAGTA 57.750 39.130 0.00 0.00 0.00 1.82
2779 3610 3.772060 AATAGTACCGTCCGAGTTCAC 57.228 47.619 0.00 0.00 0.00 3.18
2780 3611 1.453155 TAGTACCGTCCGAGTTCACC 58.547 55.000 0.00 0.00 0.00 4.02
2788 3619 0.761323 TCCGAGTTCACCTTCACCCA 60.761 55.000 0.00 0.00 0.00 4.51
2789 3620 0.324943 CCGAGTTCACCTTCACCCAT 59.675 55.000 0.00 0.00 0.00 4.00
2790 3621 1.676014 CCGAGTTCACCTTCACCCATC 60.676 57.143 0.00 0.00 0.00 3.51
2791 3622 1.676014 CGAGTTCACCTTCACCCATCC 60.676 57.143 0.00 0.00 0.00 3.51
2792 3623 0.698818 AGTTCACCTTCACCCATCCC 59.301 55.000 0.00 0.00 0.00 3.85
2793 3624 0.676782 GTTCACCTTCACCCATCCCG 60.677 60.000 0.00 0.00 0.00 5.14
2794 3625 1.847798 TTCACCTTCACCCATCCCGG 61.848 60.000 0.00 0.00 0.00 5.73
2795 3626 2.124085 ACCTTCACCCATCCCGGA 59.876 61.111 0.73 0.00 36.56 5.14
2796 3627 1.995626 ACCTTCACCCATCCCGGAG 60.996 63.158 0.73 0.00 36.56 4.63
2797 3628 2.190578 CTTCACCCATCCCGGAGC 59.809 66.667 0.73 0.00 36.56 4.70
2798 3629 3.406595 CTTCACCCATCCCGGAGCC 62.407 68.421 0.73 0.00 36.56 4.70
2814 3645 4.489771 CCGGCGGCTCCCATTTCT 62.490 66.667 15.42 0.00 0.00 2.52
2815 3646 3.204827 CGGCGGCTCCCATTTCTG 61.205 66.667 7.61 0.00 0.00 3.02
2816 3647 3.521796 GGCGGCTCCCATTTCTGC 61.522 66.667 0.00 0.00 0.00 4.26
2817 3648 2.751436 GCGGCTCCCATTTCTGCA 60.751 61.111 0.00 0.00 32.64 4.41
2818 3649 3.056313 GCGGCTCCCATTTCTGCAC 62.056 63.158 0.00 0.00 32.64 4.57
2819 3650 1.675310 CGGCTCCCATTTCTGCACA 60.675 57.895 0.00 0.00 0.00 4.57
2820 3651 1.885871 GGCTCCCATTTCTGCACAC 59.114 57.895 0.00 0.00 0.00 3.82
2821 3652 0.895100 GGCTCCCATTTCTGCACACA 60.895 55.000 0.00 0.00 0.00 3.72
2822 3653 0.242017 GCTCCCATTTCTGCACACAC 59.758 55.000 0.00 0.00 0.00 3.82
2823 3654 0.883833 CTCCCATTTCTGCACACACC 59.116 55.000 0.00 0.00 0.00 4.16
2824 3655 0.478072 TCCCATTTCTGCACACACCT 59.522 50.000 0.00 0.00 0.00 4.00
2825 3656 0.599558 CCCATTTCTGCACACACCTG 59.400 55.000 0.00 0.00 0.00 4.00
2826 3657 0.599558 CCATTTCTGCACACACCTGG 59.400 55.000 0.00 0.00 0.00 4.45
2827 3658 0.599558 CATTTCTGCACACACCTGGG 59.400 55.000 0.00 0.00 0.00 4.45
2832 3663 3.357079 GCACACACCTGGGCTTCG 61.357 66.667 0.00 0.00 44.28 3.79
2833 3664 2.669569 CACACACCTGGGCTTCGG 60.670 66.667 0.00 0.00 0.00 4.30
2835 3666 3.636231 CACACCTGGGCTTCGGGA 61.636 66.667 11.48 0.00 44.90 5.14
2836 3667 3.637273 ACACCTGGGCTTCGGGAC 61.637 66.667 11.48 0.00 44.90 4.46
2837 3668 4.410400 CACCTGGGCTTCGGGACC 62.410 72.222 11.48 0.00 44.90 4.46
2838 3669 4.658786 ACCTGGGCTTCGGGACCT 62.659 66.667 11.48 0.00 45.52 3.85
2839 3670 4.101448 CCTGGGCTTCGGGACCTG 62.101 72.222 0.00 0.00 45.52 4.00
2840 3671 4.785453 CTGGGCTTCGGGACCTGC 62.785 72.222 0.00 0.00 45.52 4.85
2844 3675 4.021925 GCTTCGGGACCTGCACCT 62.022 66.667 0.00 0.00 0.00 4.00
2845 3676 2.266055 CTTCGGGACCTGCACCTC 59.734 66.667 0.00 0.00 0.00 3.85
2846 3677 3.316573 CTTCGGGACCTGCACCTCC 62.317 68.421 0.00 0.00 0.00 4.30
2850 3681 3.721706 GGACCTGCACCTCCCCTG 61.722 72.222 0.00 0.00 0.00 4.45
2851 3682 4.416738 GACCTGCACCTCCCCTGC 62.417 72.222 0.00 0.00 35.03 4.85
2853 3684 3.736224 CCTGCACCTCCCCTGCAT 61.736 66.667 0.00 0.00 43.61 3.96
2854 3685 2.439701 CTGCACCTCCCCTGCATG 60.440 66.667 0.00 0.00 43.61 4.06
2855 3686 2.934932 TGCACCTCCCCTGCATGA 60.935 61.111 0.00 0.00 39.76 3.07
2856 3687 2.124403 GCACCTCCCCTGCATGAG 60.124 66.667 0.00 0.00 34.56 2.90
2857 3688 2.976490 GCACCTCCCCTGCATGAGT 61.976 63.158 0.00 0.00 34.56 3.41
2858 3689 1.077930 CACCTCCCCTGCATGAGTG 60.078 63.158 0.00 3.29 0.00 3.51
2868 3699 2.816958 CATGAGTGCTTCGCCGCT 60.817 61.111 0.00 0.00 0.00 5.52
2869 3700 2.510238 ATGAGTGCTTCGCCGCTC 60.510 61.111 4.77 4.77 32.88 5.03
2870 3701 4.742201 TGAGTGCTTCGCCGCTCC 62.742 66.667 8.09 0.00 31.85 4.70
2871 3702 4.742201 GAGTGCTTCGCCGCTCCA 62.742 66.667 0.00 0.00 0.00 3.86
2872 3703 4.087892 AGTGCTTCGCCGCTCCAT 62.088 61.111 0.00 0.00 0.00 3.41
2873 3704 3.567797 GTGCTTCGCCGCTCCATC 61.568 66.667 0.00 0.00 0.00 3.51
2874 3705 4.081185 TGCTTCGCCGCTCCATCA 62.081 61.111 0.00 0.00 0.00 3.07
2875 3706 2.590007 GCTTCGCCGCTCCATCAT 60.590 61.111 0.00 0.00 0.00 2.45
2876 3707 1.300931 GCTTCGCCGCTCCATCATA 60.301 57.895 0.00 0.00 0.00 2.15
2877 3708 0.671781 GCTTCGCCGCTCCATCATAT 60.672 55.000 0.00 0.00 0.00 1.78
2878 3709 1.073964 CTTCGCCGCTCCATCATATG 58.926 55.000 0.00 0.00 0.00 1.78
2879 3710 0.950555 TTCGCCGCTCCATCATATGC 60.951 55.000 0.00 0.00 0.00 3.14
2880 3711 2.733671 CGCCGCTCCATCATATGCG 61.734 63.158 0.00 0.00 46.74 4.73
2886 3717 3.857549 GCTCCATCATATGCGAGTAGA 57.142 47.619 12.84 0.00 33.15 2.59
2887 3718 3.506810 GCTCCATCATATGCGAGTAGAC 58.493 50.000 12.84 0.00 33.15 2.59
2888 3719 3.674682 GCTCCATCATATGCGAGTAGACC 60.675 52.174 12.84 0.00 33.15 3.85
2889 3720 2.826128 TCCATCATATGCGAGTAGACCC 59.174 50.000 0.00 0.00 0.00 4.46
2890 3721 2.093973 CCATCATATGCGAGTAGACCCC 60.094 54.545 0.00 0.00 0.00 4.95
2891 3722 2.677542 TCATATGCGAGTAGACCCCT 57.322 50.000 0.00 0.00 0.00 4.79
2892 3723 2.515854 TCATATGCGAGTAGACCCCTC 58.484 52.381 0.00 0.00 0.00 4.30
2893 3724 2.158519 TCATATGCGAGTAGACCCCTCA 60.159 50.000 0.00 0.00 0.00 3.86
2894 3725 1.982660 TATGCGAGTAGACCCCTCAG 58.017 55.000 0.00 0.00 0.00 3.35
2895 3726 1.395826 ATGCGAGTAGACCCCTCAGC 61.396 60.000 0.00 0.00 32.73 4.26
2896 3727 2.052690 GCGAGTAGACCCCTCAGCA 61.053 63.158 0.00 0.00 32.53 4.41
2897 3728 1.605058 GCGAGTAGACCCCTCAGCAA 61.605 60.000 0.00 0.00 32.53 3.91
2898 3729 1.115467 CGAGTAGACCCCTCAGCAAT 58.885 55.000 0.00 0.00 0.00 3.56
2899 3730 1.067821 CGAGTAGACCCCTCAGCAATC 59.932 57.143 0.00 0.00 0.00 2.67
2900 3731 2.393646 GAGTAGACCCCTCAGCAATCT 58.606 52.381 0.00 0.00 0.00 2.40
2901 3732 2.364002 GAGTAGACCCCTCAGCAATCTC 59.636 54.545 0.00 0.00 0.00 2.75
2902 3733 2.111384 GTAGACCCCTCAGCAATCTCA 58.889 52.381 0.00 0.00 0.00 3.27
2903 3734 1.890552 AGACCCCTCAGCAATCTCAT 58.109 50.000 0.00 0.00 0.00 2.90
2904 3735 1.489649 AGACCCCTCAGCAATCTCATG 59.510 52.381 0.00 0.00 0.00 3.07
2905 3736 1.211457 GACCCCTCAGCAATCTCATGT 59.789 52.381 0.00 0.00 0.00 3.21
2906 3737 1.064906 ACCCCTCAGCAATCTCATGTG 60.065 52.381 0.00 0.00 0.00 3.21
2907 3738 1.676746 CCCTCAGCAATCTCATGTGG 58.323 55.000 0.00 0.00 0.00 4.17
2908 3739 1.211212 CCCTCAGCAATCTCATGTGGA 59.789 52.381 0.00 0.00 30.83 4.02
2909 3740 2.158652 CCCTCAGCAATCTCATGTGGAT 60.159 50.000 0.00 0.00 30.83 3.41
2910 3741 2.879026 CCTCAGCAATCTCATGTGGATG 59.121 50.000 0.00 0.00 30.83 3.51
2911 3742 3.433173 CCTCAGCAATCTCATGTGGATGA 60.433 47.826 0.00 0.00 37.07 2.92
2922 3753 4.851843 TCATGTGGATGAGCAATTCTTCT 58.148 39.130 0.00 0.00 33.40 2.85
2923 3754 5.258841 TCATGTGGATGAGCAATTCTTCTT 58.741 37.500 0.00 0.00 33.40 2.52
2924 3755 5.356190 TCATGTGGATGAGCAATTCTTCTTC 59.644 40.000 0.00 0.00 33.40 2.87
2925 3756 4.012374 TGTGGATGAGCAATTCTTCTTCC 58.988 43.478 11.15 11.15 32.15 3.46
2926 3757 4.012374 GTGGATGAGCAATTCTTCTTCCA 58.988 43.478 14.60 14.60 32.15 3.53
2927 3758 4.643784 GTGGATGAGCAATTCTTCTTCCAT 59.356 41.667 18.65 0.00 33.17 3.41
2928 3759 4.885907 TGGATGAGCAATTCTTCTTCCATC 59.114 41.667 14.60 0.00 32.15 3.51
2929 3760 4.277921 GGATGAGCAATTCTTCTTCCATCC 59.722 45.833 0.00 0.00 41.06 3.51
2930 3761 3.624777 TGAGCAATTCTTCTTCCATCCC 58.375 45.455 0.00 0.00 0.00 3.85
2931 3762 3.267812 TGAGCAATTCTTCTTCCATCCCT 59.732 43.478 0.00 0.00 0.00 4.20
2932 3763 3.629087 AGCAATTCTTCTTCCATCCCTG 58.371 45.455 0.00 0.00 0.00 4.45
2933 3764 2.692041 GCAATTCTTCTTCCATCCCTGG 59.308 50.000 0.00 0.00 44.64 4.45
2934 3765 3.879321 GCAATTCTTCTTCCATCCCTGGT 60.879 47.826 0.00 0.00 43.61 4.00
2935 3766 3.659183 ATTCTTCTTCCATCCCTGGTG 57.341 47.619 0.00 0.00 43.61 4.17
2936 3767 2.044793 TCTTCTTCCATCCCTGGTGT 57.955 50.000 0.00 0.00 43.61 4.16
2937 3768 1.909302 TCTTCTTCCATCCCTGGTGTC 59.091 52.381 0.00 0.00 43.61 3.67
2938 3769 1.630369 CTTCTTCCATCCCTGGTGTCA 59.370 52.381 0.00 0.00 43.61 3.58
2939 3770 1.971149 TCTTCCATCCCTGGTGTCAT 58.029 50.000 0.00 0.00 43.61 3.06
2940 3771 2.278245 TCTTCCATCCCTGGTGTCATT 58.722 47.619 0.00 0.00 43.61 2.57
2941 3772 2.025981 TCTTCCATCCCTGGTGTCATTG 60.026 50.000 0.00 0.00 43.61 2.82
2942 3773 0.034186 TCCATCCCTGGTGTCATTGC 60.034 55.000 0.00 0.00 43.61 3.56
2943 3774 1.378882 CCATCCCTGGTGTCATTGCG 61.379 60.000 0.00 0.00 37.79 4.85
2944 3775 1.077501 ATCCCTGGTGTCATTGCGG 60.078 57.895 0.00 0.00 0.00 5.69
2945 3776 2.556840 ATCCCTGGTGTCATTGCGGG 62.557 60.000 0.00 0.00 0.00 6.13
2946 3777 3.443045 CCTGGTGTCATTGCGGGC 61.443 66.667 0.00 0.00 0.00 6.13
2947 3778 2.672651 CTGGTGTCATTGCGGGCA 60.673 61.111 0.00 0.00 0.00 5.36
2948 3779 2.203408 TGGTGTCATTGCGGGCAA 60.203 55.556 8.72 8.72 40.47 4.52
2949 3780 2.203972 CTGGTGTCATTGCGGGCAAG 62.204 60.000 12.07 4.69 39.47 4.01
2950 3781 2.126346 GTGTCATTGCGGGCAAGC 60.126 61.111 12.07 5.54 39.47 4.01
2951 3782 3.372730 TGTCATTGCGGGCAAGCC 61.373 61.111 12.07 1.52 39.47 4.35
2952 3783 3.372730 GTCATTGCGGGCAAGCCA 61.373 61.111 13.87 0.00 39.47 4.75
2953 3784 3.372730 TCATTGCGGGCAAGCCAC 61.373 61.111 13.87 4.92 39.47 5.01
2954 3785 3.682885 CATTGCGGGCAAGCCACA 61.683 61.111 13.87 7.67 39.47 4.17
2955 3786 3.376078 ATTGCGGGCAAGCCACAG 61.376 61.111 13.87 4.84 39.47 3.66
2961 3792 4.715523 GGCAAGCCACAGCCCGTA 62.716 66.667 6.14 0.00 45.18 4.02
2962 3793 3.431725 GCAAGCCACAGCCCGTAC 61.432 66.667 0.00 0.00 41.25 3.67
2963 3794 3.118454 CAAGCCACAGCCCGTACG 61.118 66.667 8.69 8.69 41.25 3.67
2964 3795 3.622826 AAGCCACAGCCCGTACGT 61.623 61.111 15.21 0.00 41.25 3.57
2965 3796 3.173167 AAGCCACAGCCCGTACGTT 62.173 57.895 15.21 0.00 41.25 3.99
2966 3797 3.419759 GCCACAGCCCGTACGTTG 61.420 66.667 15.21 11.74 0.00 4.10
2967 3798 3.419759 CCACAGCCCGTACGTTGC 61.420 66.667 15.21 15.99 0.00 4.17
2968 3799 2.663520 CACAGCCCGTACGTTGCA 60.664 61.111 23.48 0.00 0.00 4.08
2969 3800 2.032634 CACAGCCCGTACGTTGCAT 61.033 57.895 23.48 12.02 0.00 3.96
2970 3801 2.032634 ACAGCCCGTACGTTGCATG 61.033 57.895 23.48 19.75 0.00 4.06
2971 3802 1.739929 CAGCCCGTACGTTGCATGA 60.740 57.895 23.48 0.00 0.00 3.07
2972 3803 1.004320 AGCCCGTACGTTGCATGAA 60.004 52.632 23.48 0.00 0.00 2.57
2973 3804 1.133869 GCCCGTACGTTGCATGAAC 59.866 57.895 15.21 0.00 0.00 3.18
2974 3805 1.791662 CCCGTACGTTGCATGAACC 59.208 57.895 15.21 0.00 0.00 3.62
2975 3806 0.951525 CCCGTACGTTGCATGAACCA 60.952 55.000 15.21 0.00 0.00 3.67
2976 3807 1.083489 CCGTACGTTGCATGAACCAT 58.917 50.000 15.21 0.00 0.00 3.55
2977 3808 2.272678 CCGTACGTTGCATGAACCATA 58.727 47.619 15.21 0.00 0.00 2.74
2978 3809 2.673862 CCGTACGTTGCATGAACCATAA 59.326 45.455 15.21 0.00 0.00 1.90
2979 3810 3.484557 CCGTACGTTGCATGAACCATAAC 60.485 47.826 15.21 0.00 0.00 1.89
2980 3811 3.369756 CGTACGTTGCATGAACCATAACT 59.630 43.478 7.22 0.00 0.00 2.24
2981 3812 4.142988 CGTACGTTGCATGAACCATAACTT 60.143 41.667 7.22 0.00 0.00 2.66
2982 3813 4.419522 ACGTTGCATGAACCATAACTTC 57.580 40.909 0.00 0.00 0.00 3.01
2983 3814 4.072131 ACGTTGCATGAACCATAACTTCT 58.928 39.130 0.00 0.00 0.00 2.85
2984 3815 4.518970 ACGTTGCATGAACCATAACTTCTT 59.481 37.500 0.00 0.00 0.00 2.52
2985 3816 5.009610 ACGTTGCATGAACCATAACTTCTTT 59.990 36.000 0.00 0.00 0.00 2.52
2986 3817 5.569059 CGTTGCATGAACCATAACTTCTTTC 59.431 40.000 0.00 0.00 0.00 2.62
2987 3818 6.568462 CGTTGCATGAACCATAACTTCTTTCT 60.568 38.462 0.00 0.00 0.00 2.52
2988 3819 6.500684 TGCATGAACCATAACTTCTTTCTC 57.499 37.500 0.00 0.00 0.00 2.87
2989 3820 5.415701 TGCATGAACCATAACTTCTTTCTCC 59.584 40.000 0.00 0.00 0.00 3.71
2990 3821 5.649831 GCATGAACCATAACTTCTTTCTCCT 59.350 40.000 0.00 0.00 0.00 3.69
2991 3822 6.183360 GCATGAACCATAACTTCTTTCTCCTC 60.183 42.308 0.00 0.00 0.00 3.71
2992 3823 6.433847 TGAACCATAACTTCTTTCTCCTCA 57.566 37.500 0.00 0.00 0.00 3.86
2993 3824 7.020827 TGAACCATAACTTCTTTCTCCTCAT 57.979 36.000 0.00 0.00 0.00 2.90
2994 3825 7.106239 TGAACCATAACTTCTTTCTCCTCATC 58.894 38.462 0.00 0.00 0.00 2.92
2995 3826 6.627087 ACCATAACTTCTTTCTCCTCATCA 57.373 37.500 0.00 0.00 0.00 3.07
2996 3827 7.205515 ACCATAACTTCTTTCTCCTCATCAT 57.794 36.000 0.00 0.00 0.00 2.45
2997 3828 7.637511 ACCATAACTTCTTTCTCCTCATCATT 58.362 34.615 0.00 0.00 0.00 2.57
2998 3829 8.112183 ACCATAACTTCTTTCTCCTCATCATTT 58.888 33.333 0.00 0.00 0.00 2.32
2999 3830 8.404000 CCATAACTTCTTTCTCCTCATCATTTG 58.596 37.037 0.00 0.00 0.00 2.32
3000 3831 8.954350 CATAACTTCTTTCTCCTCATCATTTGT 58.046 33.333 0.00 0.00 0.00 2.83
3001 3832 6.814506 ACTTCTTTCTCCTCATCATTTGTG 57.185 37.500 0.00 0.00 0.00 3.33
3002 3833 5.182760 ACTTCTTTCTCCTCATCATTTGTGC 59.817 40.000 0.00 0.00 0.00 4.57
3003 3834 4.012374 TCTTTCTCCTCATCATTTGTGCC 58.988 43.478 0.00 0.00 0.00 5.01
3004 3835 2.425143 TCTCCTCATCATTTGTGCCC 57.575 50.000 0.00 0.00 0.00 5.36
3005 3836 1.634973 TCTCCTCATCATTTGTGCCCA 59.365 47.619 0.00 0.00 0.00 5.36
3006 3837 1.747355 CTCCTCATCATTTGTGCCCAC 59.253 52.381 0.00 0.00 0.00 4.61
3007 3838 1.075212 TCCTCATCATTTGTGCCCACA 59.925 47.619 0.00 0.00 39.98 4.17
3015 3846 2.686632 TGTGCCCACAAACCACCT 59.313 55.556 0.00 0.00 38.56 4.00
3016 3847 1.756172 TGTGCCCACAAACCACCTG 60.756 57.895 0.00 0.00 38.56 4.00
3017 3848 2.123511 TGCCCACAAACCACCTGG 60.124 61.111 0.00 0.00 42.17 4.45
3018 3849 2.917227 GCCCACAAACCACCTGGG 60.917 66.667 0.00 0.00 46.79 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.096001 GGTCGGTTGGAGTTTACTAGAATAGA 59.904 42.308 0.00 0.00 42.77 1.98
136 140 4.585879 TCAATAGGGTAGACAAAAGTGCC 58.414 43.478 0.00 0.00 0.00 5.01
208 955 5.426504 CTGCAGTGTTTAGAATGATCTCCT 58.573 41.667 5.25 0.00 37.10 3.69
287 1034 9.528018 GTAAGGATGATTTCTGAACTTAGAGAG 57.472 37.037 0.00 0.00 0.00 3.20
354 1106 3.118775 GCCAACTTGAATATCCCCAAACC 60.119 47.826 0.00 0.00 0.00 3.27
411 1186 4.679373 ATACAGAGGAGAATGCAATCGT 57.321 40.909 0.00 0.00 0.00 3.73
561 1339 7.064609 TCTCAACTTTATCTGCTAAAATCCACG 59.935 37.037 0.00 0.00 0.00 4.94
563 1341 8.862325 TTCTCAACTTTATCTGCTAAAATCCA 57.138 30.769 0.00 0.00 0.00 3.41
564 1342 9.780413 CTTTCTCAACTTTATCTGCTAAAATCC 57.220 33.333 0.00 0.00 0.00 3.01
705 1484 1.762460 CCTACGTGGCATCTCCCCT 60.762 63.158 0.00 0.00 0.00 4.79
749 1529 4.814294 CTACGTGGCGTCCCCTGC 62.814 72.222 0.00 0.00 41.54 4.85
750 1530 4.814294 GCTACGTGGCGTCCCCTG 62.814 72.222 8.55 0.00 41.54 4.45
784 1564 0.535102 CATTGGGCCACGTAGGATCC 60.535 60.000 5.23 2.48 41.22 3.36
807 1587 2.510464 AATATCCGCACGCGCACA 60.510 55.556 5.73 0.00 38.40 4.57
814 1594 0.670162 ATTGGCTGCAATATCCGCAC 59.330 50.000 0.50 0.00 35.08 5.34
944 1724 0.583438 CTGCGGTGAGACAACAACAG 59.417 55.000 0.00 0.00 0.00 3.16
974 1754 0.890683 TGTTGCTCTCTCGATGCTGA 59.109 50.000 0.00 0.00 0.00 4.26
1056 1836 4.467084 GACCGGGATGAAGGCGCA 62.467 66.667 10.83 0.00 0.00 6.09
1216 1996 2.413796 CTGCTCGATCGGCTACTAGTAG 59.586 54.545 23.25 23.25 36.29 2.57
1217 1997 2.224233 ACTGCTCGATCGGCTACTAGTA 60.224 50.000 22.99 1.89 0.00 1.82
1218 1998 1.231221 CTGCTCGATCGGCTACTAGT 58.769 55.000 22.99 0.00 0.00 2.57
1232 2012 1.634702 GAGTCGATTGGTCACTGCTC 58.365 55.000 0.00 0.00 0.00 4.26
1245 2025 4.096382 TCAGATTGATTGATGTCGAGTCGA 59.904 41.667 12.09 12.09 0.00 4.20
1247 2027 4.505922 GGTCAGATTGATTGATGTCGAGTC 59.494 45.833 0.00 0.00 0.00 3.36
1249 2029 3.488678 CGGTCAGATTGATTGATGTCGAG 59.511 47.826 0.00 0.00 0.00 4.04
1250 2030 3.447742 CGGTCAGATTGATTGATGTCGA 58.552 45.455 0.00 0.00 0.00 4.20
1251 2031 2.541346 CCGGTCAGATTGATTGATGTCG 59.459 50.000 0.00 0.00 0.00 4.35
1253 2033 2.292267 GCCGGTCAGATTGATTGATGT 58.708 47.619 1.90 0.00 0.00 3.06
1254 2034 1.262417 CGCCGGTCAGATTGATTGATG 59.738 52.381 1.90 0.00 0.00 3.07
1255 2035 1.138859 TCGCCGGTCAGATTGATTGAT 59.861 47.619 1.90 0.00 0.00 2.57
1256 2036 0.534873 TCGCCGGTCAGATTGATTGA 59.465 50.000 1.90 0.00 0.00 2.57
1257 2037 0.652592 GTCGCCGGTCAGATTGATTG 59.347 55.000 1.90 0.00 0.00 2.67
1258 2038 0.537188 AGTCGCCGGTCAGATTGATT 59.463 50.000 1.90 0.00 0.00 2.57
1289 2071 2.434359 GAACCCGAAGTCCCTGCG 60.434 66.667 0.00 0.00 31.28 5.18
1431 2216 4.210537 GCTACTAGCGAACAACTCAACAAA 59.789 41.667 0.00 0.00 0.00 2.83
1454 2239 0.525242 CGGCGCAACCCATGTTATTG 60.525 55.000 10.83 0.00 32.09 1.90
1471 2256 2.883730 CGTCCATGCCACGTACGG 60.884 66.667 21.06 8.46 32.41 4.02
1472 2257 2.156446 GTCGTCCATGCCACGTACG 61.156 63.158 15.01 15.01 38.45 3.67
1473 2258 2.156446 CGTCGTCCATGCCACGTAC 61.156 63.158 13.30 9.96 38.45 3.67
1474 2259 2.179767 CGTCGTCCATGCCACGTA 59.820 61.111 13.30 1.15 38.45 3.57
1475 2260 3.986006 ACGTCGTCCATGCCACGT 61.986 61.111 13.30 8.89 40.56 4.49
1476 2261 3.478394 CACGTCGTCCATGCCACG 61.478 66.667 8.69 8.69 38.67 4.94
1477 2262 3.788766 GCACGTCGTCCATGCCAC 61.789 66.667 0.00 0.00 33.06 5.01
1748 2533 1.802069 GCTTGAGCTCCTCGAACTTT 58.198 50.000 12.15 0.00 38.21 2.66
1796 2581 1.134228 AACGGGGTATATGGTGGGAC 58.866 55.000 0.00 0.00 0.00 4.46
2053 2871 3.299190 CCGGCTCCTCGATCTCCC 61.299 72.222 0.00 0.00 0.00 4.30
2108 2938 1.069022 CGTGGCAAGTTGATCAACCAG 60.069 52.381 30.34 23.97 42.06 4.00
2223 3053 0.605050 TGCATTCACAACAGCGGCTA 60.605 50.000 0.26 0.00 0.00 3.93
2224 3054 1.898094 TGCATTCACAACAGCGGCT 60.898 52.632 0.00 0.00 0.00 5.52
2228 3058 1.081242 CGGGTGCATTCACAACAGC 60.081 57.895 0.00 0.00 44.87 4.40
2243 3073 6.366332 GCAAGAGTTTATACAGATCATACGGG 59.634 42.308 0.00 0.00 0.00 5.28
2280 3111 4.470462 CAGCGTTGATCCTCAAGAAAAAG 58.530 43.478 0.00 0.00 37.00 2.27
2281 3112 3.304659 GCAGCGTTGATCCTCAAGAAAAA 60.305 43.478 2.38 0.00 37.00 1.94
2282 3113 2.226437 GCAGCGTTGATCCTCAAGAAAA 59.774 45.455 2.38 0.00 37.00 2.29
2283 3114 1.806542 GCAGCGTTGATCCTCAAGAAA 59.193 47.619 2.38 0.00 37.00 2.52
2284 3115 1.002430 AGCAGCGTTGATCCTCAAGAA 59.998 47.619 2.38 0.00 37.00 2.52
2285 3116 0.610174 AGCAGCGTTGATCCTCAAGA 59.390 50.000 2.38 0.00 37.00 3.02
2286 3117 0.725686 CAGCAGCGTTGATCCTCAAG 59.274 55.000 2.38 0.00 37.00 3.02
2287 3118 1.300971 GCAGCAGCGTTGATCCTCAA 61.301 55.000 2.38 0.00 33.32 3.02
2288 3119 1.742880 GCAGCAGCGTTGATCCTCA 60.743 57.895 2.38 0.00 0.00 3.86
2289 3120 1.094073 ATGCAGCAGCGTTGATCCTC 61.094 55.000 2.38 0.00 46.23 3.71
2332 3163 8.853077 TCTTTCTGTAATCACTGATGACATTT 57.147 30.769 9.36 0.00 37.79 2.32
2333 3164 8.725148 GTTCTTTCTGTAATCACTGATGACATT 58.275 33.333 9.36 0.00 37.79 2.71
2344 3175 6.486657 CCCTGACTTTGTTCTTTCTGTAATCA 59.513 38.462 0.00 0.00 0.00 2.57
2354 3185 2.106684 GGTCTCCCCTGACTTTGTTCTT 59.893 50.000 0.00 0.00 37.16 2.52
2372 3203 1.133730 TGTAAGGTGTGGTTTGGGGTC 60.134 52.381 0.00 0.00 0.00 4.46
2373 3204 0.927767 TGTAAGGTGTGGTTTGGGGT 59.072 50.000 0.00 0.00 0.00 4.95
2374 3205 2.302587 ATGTAAGGTGTGGTTTGGGG 57.697 50.000 0.00 0.00 0.00 4.96
2378 3209 4.760204 GCTGAGTTATGTAAGGTGTGGTTT 59.240 41.667 0.00 0.00 0.00 3.27
2379 3210 4.202419 TGCTGAGTTATGTAAGGTGTGGTT 60.202 41.667 0.00 0.00 0.00 3.67
2386 3217 3.055094 AGTGGGTGCTGAGTTATGTAAGG 60.055 47.826 0.00 0.00 0.00 2.69
2400 3231 0.960861 GCAAAGGTAGGAGTGGGTGC 60.961 60.000 0.00 0.00 0.00 5.01
2408 3239 3.267483 GCATAAGTTCGCAAAGGTAGGA 58.733 45.455 0.00 0.00 0.00 2.94
2420 3251 1.580132 CGTTGCCGCGCATAAGTTC 60.580 57.895 8.75 0.00 38.76 3.01
2432 3263 2.051345 CGTTCTGCCAACGTTGCC 60.051 61.111 22.93 13.04 38.69 4.52
2435 3266 3.645975 CGCCGTTCTGCCAACGTT 61.646 61.111 14.78 0.00 41.64 3.99
2444 3275 2.342648 GACTGGGTTCGCCGTTCT 59.657 61.111 0.00 0.00 38.45 3.01
2447 3278 3.319198 ATGGACTGGGTTCGCCGT 61.319 61.111 0.00 0.00 38.45 5.68
2450 3281 3.499737 CGCATGGACTGGGTTCGC 61.500 66.667 0.00 0.00 33.29 4.70
2453 3284 0.110486 AGTTTCGCATGGACTGGGTT 59.890 50.000 0.00 0.00 38.84 4.11
2459 3290 1.787847 CGTGGAGTTTCGCATGGAC 59.212 57.895 0.00 0.00 0.00 4.02
2471 3302 2.505777 CTCAGCTCGTGCGTGGAG 60.506 66.667 3.48 8.79 45.42 3.86
2472 3303 4.724602 GCTCAGCTCGTGCGTGGA 62.725 66.667 3.48 2.93 45.42 4.02
2485 3316 5.411831 TCAAGAGATTAAAGAGCTGCTCA 57.588 39.130 29.49 10.99 32.06 4.26
2486 3317 6.018016 GGATTCAAGAGATTAAAGAGCTGCTC 60.018 42.308 21.72 21.72 0.00 4.26
2498 3329 1.408822 GGGCCGTGGATTCAAGAGATT 60.409 52.381 0.00 0.00 0.00 2.40
2500 3331 0.909610 AGGGCCGTGGATTCAAGAGA 60.910 55.000 0.00 0.00 0.00 3.10
2519 3350 3.357203 TGAAAGGTGTTTGGCTGTTGTA 58.643 40.909 0.00 0.00 0.00 2.41
2535 3366 4.387862 GCAAATGTTGATGCTTCCTGAAAG 59.612 41.667 0.00 0.00 39.46 2.62
2537 3368 3.321396 TGCAAATGTTGATGCTTCCTGAA 59.679 39.130 0.00 0.00 42.97 3.02
2543 3374 2.102757 TGTGGTGCAAATGTTGATGCTT 59.897 40.909 0.00 0.00 42.97 3.91
2544 3375 1.687660 TGTGGTGCAAATGTTGATGCT 59.312 42.857 0.00 0.00 42.97 3.79
2547 3378 1.001181 GGCTGTGGTGCAAATGTTGAT 59.999 47.619 0.00 0.00 34.04 2.57
2548 3379 0.388659 GGCTGTGGTGCAAATGTTGA 59.611 50.000 0.00 0.00 34.04 3.18
2549 3380 0.390124 AGGCTGTGGTGCAAATGTTG 59.610 50.000 0.00 0.00 34.04 3.33
2551 3382 0.390124 CAAGGCTGTGGTGCAAATGT 59.610 50.000 0.00 0.00 34.04 2.71
2553 3384 1.117142 AGCAAGGCTGTGGTGCAAAT 61.117 50.000 11.17 0.00 40.83 2.32
2575 3406 0.529555 GCGAGTCCATCTTGAGCTCC 60.530 60.000 12.15 0.00 0.00 4.70
2582 3413 0.250513 GGGTTCAGCGAGTCCATCTT 59.749 55.000 0.00 0.00 0.00 2.40
2585 3416 1.488705 TTGGGGTTCAGCGAGTCCAT 61.489 55.000 0.00 0.00 0.00 3.41
2597 3428 1.756538 CTTGCAGTTGAACTTGGGGTT 59.243 47.619 0.00 0.00 41.40 4.11
2623 3454 3.704231 CTAGCATGCAGGCGGGGTT 62.704 63.158 21.98 2.03 39.27 4.11
2624 3455 4.181010 CTAGCATGCAGGCGGGGT 62.181 66.667 21.98 2.46 39.27 4.95
2627 3458 0.250209 AGATTCTAGCATGCAGGCGG 60.250 55.000 21.98 14.82 39.27 6.13
2633 3464 5.295292 TGAAGCTACAAAGATTCTAGCATGC 59.705 40.000 10.51 10.51 46.19 4.06
2636 3467 5.423015 CCTGAAGCTACAAAGATTCTAGCA 58.577 41.667 8.48 0.00 46.19 3.49
2639 3470 5.483937 TGACCCTGAAGCTACAAAGATTCTA 59.516 40.000 5.16 0.00 46.19 2.10
2647 3478 4.286032 ACATTACTGACCCTGAAGCTACAA 59.714 41.667 0.00 0.00 0.00 2.41
2650 3481 5.245531 CAAACATTACTGACCCTGAAGCTA 58.754 41.667 0.00 0.00 0.00 3.32
2651 3482 4.074970 CAAACATTACTGACCCTGAAGCT 58.925 43.478 0.00 0.00 0.00 3.74
2660 3491 7.040409 AGTCATTTTCTCCCAAACATTACTGAC 60.040 37.037 0.00 0.00 0.00 3.51
2663 3494 7.004086 TGAGTCATTTTCTCCCAAACATTACT 58.996 34.615 0.00 0.00 0.00 2.24
2665 3496 7.004086 AGTGAGTCATTTTCTCCCAAACATTA 58.996 34.615 0.00 0.00 0.00 1.90
2666 3497 5.835280 AGTGAGTCATTTTCTCCCAAACATT 59.165 36.000 0.00 0.00 0.00 2.71
2671 3502 3.394274 TGGAGTGAGTCATTTTCTCCCAA 59.606 43.478 19.62 4.81 42.58 4.12
2672 3503 2.978978 TGGAGTGAGTCATTTTCTCCCA 59.021 45.455 19.62 6.91 42.58 4.37
2675 3506 3.006247 GGCTGGAGTGAGTCATTTTCTC 58.994 50.000 0.00 0.00 0.00 2.87
2685 3516 2.704572 CACTTTTAGGGCTGGAGTGAG 58.295 52.381 0.00 0.00 39.97 3.51
2693 3524 1.895131 CACAATGGCACTTTTAGGGCT 59.105 47.619 0.45 0.00 45.92 5.19
2697 3528 3.120199 CGAGACCACAATGGCACTTTTAG 60.120 47.826 0.00 0.00 42.67 1.85
2698 3529 2.811431 CGAGACCACAATGGCACTTTTA 59.189 45.455 0.00 0.00 42.67 1.52
2699 3530 1.608590 CGAGACCACAATGGCACTTTT 59.391 47.619 0.00 0.00 42.67 2.27
2704 3535 0.955428 GCTTCGAGACCACAATGGCA 60.955 55.000 0.00 0.00 42.67 4.92
2705 3536 0.955428 TGCTTCGAGACCACAATGGC 60.955 55.000 0.00 0.00 42.67 4.40
2709 3540 1.300620 CGGTGCTTCGAGACCACAA 60.301 57.895 12.25 0.00 31.97 3.33
2710 3541 2.338620 CGGTGCTTCGAGACCACA 59.661 61.111 12.25 0.00 31.97 4.17
2711 3542 3.112709 GCGGTGCTTCGAGACCAC 61.113 66.667 10.06 7.22 31.97 4.16
2730 3561 0.252742 GGGAACAAGGGAGGAGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
2735 3566 1.767692 GCAAGGGAACAAGGGAGGA 59.232 57.895 0.00 0.00 0.00 3.71
2738 3569 0.178964 CAAGGCAAGGGAACAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
2741 3572 4.524328 ACTATTTCAAGGCAAGGGAACAAG 59.476 41.667 0.00 0.00 0.00 3.16
2745 3576 4.595986 GGTACTATTTCAAGGCAAGGGAA 58.404 43.478 0.00 0.00 0.00 3.97
2746 3577 3.370103 CGGTACTATTTCAAGGCAAGGGA 60.370 47.826 0.00 0.00 0.00 4.20
2747 3578 2.943033 CGGTACTATTTCAAGGCAAGGG 59.057 50.000 0.00 0.00 0.00 3.95
2750 3581 3.602483 GGACGGTACTATTTCAAGGCAA 58.398 45.455 0.00 0.00 0.00 4.52
2751 3582 2.417651 CGGACGGTACTATTTCAAGGCA 60.418 50.000 0.00 0.00 0.00 4.75
2754 3585 4.367386 ACTCGGACGGTACTATTTCAAG 57.633 45.455 0.00 0.00 0.00 3.02
2756 3587 3.758023 TGAACTCGGACGGTACTATTTCA 59.242 43.478 0.00 0.00 0.00 2.69
2759 3590 2.424956 GGTGAACTCGGACGGTACTATT 59.575 50.000 0.00 0.00 0.00 1.73
2761 3592 1.003580 AGGTGAACTCGGACGGTACTA 59.996 52.381 0.00 0.00 0.00 1.82
2762 3593 0.251077 AGGTGAACTCGGACGGTACT 60.251 55.000 0.00 0.00 0.00 2.73
2764 3595 0.883833 GAAGGTGAACTCGGACGGTA 59.116 55.000 0.00 0.00 0.00 4.02
2765 3596 1.111116 TGAAGGTGAACTCGGACGGT 61.111 55.000 0.00 0.00 0.00 4.83
2779 3610 2.911143 CTCCGGGATGGGTGAAGG 59.089 66.667 0.00 0.00 38.76 3.46
2780 3611 2.190578 GCTCCGGGATGGGTGAAG 59.809 66.667 0.00 0.00 38.76 3.02
2797 3628 4.489771 AGAAATGGGAGCCGCCGG 62.490 66.667 0.00 0.00 37.63 6.13
2798 3629 3.204827 CAGAAATGGGAGCCGCCG 61.205 66.667 0.00 0.00 37.63 6.46
2799 3630 3.521796 GCAGAAATGGGAGCCGCC 61.522 66.667 0.00 0.00 0.00 6.13
2800 3631 2.751436 TGCAGAAATGGGAGCCGC 60.751 61.111 0.00 0.00 0.00 6.53
2801 3632 1.675310 TGTGCAGAAATGGGAGCCG 60.675 57.895 0.00 0.00 0.00 5.52
2802 3633 0.895100 TGTGTGCAGAAATGGGAGCC 60.895 55.000 0.00 0.00 0.00 4.70
2803 3634 0.242017 GTGTGTGCAGAAATGGGAGC 59.758 55.000 0.00 0.00 0.00 4.70
2804 3635 0.883833 GGTGTGTGCAGAAATGGGAG 59.116 55.000 0.00 0.00 0.00 4.30
2805 3636 0.478072 AGGTGTGTGCAGAAATGGGA 59.522 50.000 0.00 0.00 0.00 4.37
2806 3637 0.599558 CAGGTGTGTGCAGAAATGGG 59.400 55.000 0.00 0.00 0.00 4.00
2807 3638 0.599558 CCAGGTGTGTGCAGAAATGG 59.400 55.000 0.00 0.00 0.00 3.16
2808 3639 0.599558 CCCAGGTGTGTGCAGAAATG 59.400 55.000 0.00 0.00 0.00 2.32
2809 3640 1.181098 GCCCAGGTGTGTGCAGAAAT 61.181 55.000 0.00 0.00 0.00 2.17
2810 3641 1.827789 GCCCAGGTGTGTGCAGAAA 60.828 57.895 0.00 0.00 0.00 2.52
2811 3642 2.203337 GCCCAGGTGTGTGCAGAA 60.203 61.111 0.00 0.00 0.00 3.02
2812 3643 2.680974 GAAGCCCAGGTGTGTGCAGA 62.681 60.000 0.00 0.00 0.00 4.26
2813 3644 2.203394 AAGCCCAGGTGTGTGCAG 60.203 61.111 0.00 0.00 0.00 4.41
2814 3645 2.203337 GAAGCCCAGGTGTGTGCA 60.203 61.111 0.00 0.00 0.00 4.57
2815 3646 3.357079 CGAAGCCCAGGTGTGTGC 61.357 66.667 0.00 0.00 0.00 4.57
2816 3647 2.669569 CCGAAGCCCAGGTGTGTG 60.670 66.667 0.00 0.00 0.00 3.82
2817 3648 3.953775 CCCGAAGCCCAGGTGTGT 61.954 66.667 0.00 0.00 0.00 3.72
2818 3649 3.636231 TCCCGAAGCCCAGGTGTG 61.636 66.667 0.00 0.00 0.00 3.82
2819 3650 3.637273 GTCCCGAAGCCCAGGTGT 61.637 66.667 0.00 0.00 0.00 4.16
2820 3651 4.410400 GGTCCCGAAGCCCAGGTG 62.410 72.222 0.00 0.00 0.00 4.00
2821 3652 4.658786 AGGTCCCGAAGCCCAGGT 62.659 66.667 0.00 0.00 0.00 4.00
2822 3653 4.101448 CAGGTCCCGAAGCCCAGG 62.101 72.222 0.00 0.00 0.00 4.45
2823 3654 4.785453 GCAGGTCCCGAAGCCCAG 62.785 72.222 0.00 0.00 0.00 4.45
2827 3658 3.959991 GAGGTGCAGGTCCCGAAGC 62.960 68.421 0.00 0.00 0.00 3.86
2828 3659 2.266055 GAGGTGCAGGTCCCGAAG 59.734 66.667 0.00 0.00 0.00 3.79
2829 3660 3.319198 GGAGGTGCAGGTCCCGAA 61.319 66.667 3.18 0.00 0.00 4.30
2833 3664 3.721706 CAGGGGAGGTGCAGGTCC 61.722 72.222 5.79 5.79 0.00 4.46
2834 3665 4.416738 GCAGGGGAGGTGCAGGTC 62.417 72.222 0.00 0.00 40.86 3.85
2839 3670 2.124403 CTCATGCAGGGGAGGTGC 60.124 66.667 0.00 0.00 41.59 5.01
2840 3671 1.077930 CACTCATGCAGGGGAGGTG 60.078 63.158 4.62 2.85 35.45 4.00
2841 3672 3.408229 CACTCATGCAGGGGAGGT 58.592 61.111 4.62 0.00 35.45 3.85
2859 3690 1.073964 CATATGATGGAGCGGCGAAG 58.926 55.000 12.98 0.00 0.00 3.79
2860 3691 0.950555 GCATATGATGGAGCGGCGAA 60.951 55.000 12.98 0.00 0.00 4.70
2861 3692 1.374631 GCATATGATGGAGCGGCGA 60.375 57.895 12.98 0.00 0.00 5.54
2862 3693 2.733671 CGCATATGATGGAGCGGCG 61.734 63.158 6.97 0.51 45.83 6.46
2863 3694 3.171987 CGCATATGATGGAGCGGC 58.828 61.111 6.97 0.00 45.83 6.53
2866 3697 3.506810 GTCTACTCGCATATGATGGAGC 58.493 50.000 6.97 0.00 33.57 4.70
2867 3698 3.119316 GGGTCTACTCGCATATGATGGAG 60.119 52.174 6.97 11.47 35.24 3.86
2868 3699 2.826128 GGGTCTACTCGCATATGATGGA 59.174 50.000 6.97 0.00 0.00 3.41
2869 3700 2.093973 GGGGTCTACTCGCATATGATGG 60.094 54.545 6.97 0.00 0.00 3.51
2870 3701 2.828520 AGGGGTCTACTCGCATATGATG 59.171 50.000 6.97 0.00 0.00 3.07
2871 3702 3.093057 GAGGGGTCTACTCGCATATGAT 58.907 50.000 6.97 0.00 0.00 2.45
2872 3703 2.158519 TGAGGGGTCTACTCGCATATGA 60.159 50.000 6.97 0.00 37.79 2.15
2873 3704 2.230025 CTGAGGGGTCTACTCGCATATG 59.770 54.545 0.00 0.00 37.79 1.78
2874 3705 2.520069 CTGAGGGGTCTACTCGCATAT 58.480 52.381 0.00 0.00 37.79 1.78
2875 3706 1.982660 CTGAGGGGTCTACTCGCATA 58.017 55.000 0.00 0.00 37.79 3.14
2876 3707 1.395826 GCTGAGGGGTCTACTCGCAT 61.396 60.000 0.00 0.00 37.79 4.73
2877 3708 2.052690 GCTGAGGGGTCTACTCGCA 61.053 63.158 0.00 0.00 37.79 5.10
2878 3709 1.605058 TTGCTGAGGGGTCTACTCGC 61.605 60.000 0.00 0.00 37.79 5.03
2879 3710 1.067821 GATTGCTGAGGGGTCTACTCG 59.932 57.143 0.00 0.00 37.79 4.18
2880 3711 2.364002 GAGATTGCTGAGGGGTCTACTC 59.636 54.545 0.00 0.00 35.55 2.59
2881 3712 2.292521 TGAGATTGCTGAGGGGTCTACT 60.293 50.000 0.00 0.00 0.00 2.57
2882 3713 2.111384 TGAGATTGCTGAGGGGTCTAC 58.889 52.381 0.00 0.00 0.00 2.59
2883 3714 2.550277 TGAGATTGCTGAGGGGTCTA 57.450 50.000 0.00 0.00 0.00 2.59
2884 3715 1.489649 CATGAGATTGCTGAGGGGTCT 59.510 52.381 0.00 0.00 0.00 3.85
2885 3716 1.211457 ACATGAGATTGCTGAGGGGTC 59.789 52.381 0.00 0.00 0.00 4.46
2886 3717 1.064906 CACATGAGATTGCTGAGGGGT 60.065 52.381 0.00 0.00 0.00 4.95
2887 3718 1.676746 CACATGAGATTGCTGAGGGG 58.323 55.000 0.00 0.00 0.00 4.79
2888 3719 1.211212 TCCACATGAGATTGCTGAGGG 59.789 52.381 0.00 0.00 0.00 4.30
2889 3720 2.704464 TCCACATGAGATTGCTGAGG 57.296 50.000 0.00 0.00 0.00 3.86
2890 3721 3.805207 TCATCCACATGAGATTGCTGAG 58.195 45.455 0.00 0.00 33.80 3.35
2891 3722 3.918294 TCATCCACATGAGATTGCTGA 57.082 42.857 0.00 0.00 33.80 4.26
2900 3731 4.851843 AGAAGAATTGCTCATCCACATGA 58.148 39.130 0.00 0.00 36.62 3.07
2901 3732 5.450137 GGAAGAAGAATTGCTCATCCACATG 60.450 44.000 0.00 0.00 0.00 3.21
2902 3733 4.643784 GGAAGAAGAATTGCTCATCCACAT 59.356 41.667 3.76 0.00 0.00 3.21
2903 3734 4.012374 GGAAGAAGAATTGCTCATCCACA 58.988 43.478 3.76 0.00 0.00 4.17
2904 3735 4.012374 TGGAAGAAGAATTGCTCATCCAC 58.988 43.478 6.33 0.00 31.47 4.02
2905 3736 4.305539 TGGAAGAAGAATTGCTCATCCA 57.694 40.909 6.33 6.33 33.00 3.41
2906 3737 4.277921 GGATGGAAGAAGAATTGCTCATCC 59.722 45.833 0.00 0.00 0.00 3.51
2907 3738 4.277921 GGGATGGAAGAAGAATTGCTCATC 59.722 45.833 0.00 0.00 0.00 2.92
2908 3739 4.079327 AGGGATGGAAGAAGAATTGCTCAT 60.079 41.667 0.00 0.00 0.00 2.90
2909 3740 3.267812 AGGGATGGAAGAAGAATTGCTCA 59.732 43.478 0.00 0.00 0.00 4.26
2910 3741 3.631227 CAGGGATGGAAGAAGAATTGCTC 59.369 47.826 0.00 0.00 0.00 4.26
2911 3742 3.626729 CCAGGGATGGAAGAAGAATTGCT 60.627 47.826 0.00 0.00 0.00 3.91
2912 3743 2.692041 CCAGGGATGGAAGAAGAATTGC 59.308 50.000 0.00 0.00 0.00 3.56
2913 3744 3.698040 CACCAGGGATGGAAGAAGAATTG 59.302 47.826 0.31 0.00 0.00 2.32
2914 3745 3.334881 ACACCAGGGATGGAAGAAGAATT 59.665 43.478 0.31 0.00 0.00 2.17
2915 3746 2.922283 ACACCAGGGATGGAAGAAGAAT 59.078 45.455 0.31 0.00 0.00 2.40
2916 3747 2.305927 GACACCAGGGATGGAAGAAGAA 59.694 50.000 0.31 0.00 0.00 2.52
2917 3748 1.909302 GACACCAGGGATGGAAGAAGA 59.091 52.381 0.31 0.00 0.00 2.87
2918 3749 1.630369 TGACACCAGGGATGGAAGAAG 59.370 52.381 0.31 0.00 0.00 2.85
2919 3750 1.741028 TGACACCAGGGATGGAAGAA 58.259 50.000 0.31 0.00 0.00 2.52
2920 3751 1.971149 ATGACACCAGGGATGGAAGA 58.029 50.000 0.31 0.00 0.00 2.87
2921 3752 2.372264 CAATGACACCAGGGATGGAAG 58.628 52.381 0.31 0.00 0.00 3.46
2922 3753 1.616725 GCAATGACACCAGGGATGGAA 60.617 52.381 0.31 0.00 0.00 3.53
2923 3754 0.034186 GCAATGACACCAGGGATGGA 60.034 55.000 0.31 0.00 0.00 3.41
2924 3755 1.378882 CGCAATGACACCAGGGATGG 61.379 60.000 0.00 0.00 0.00 3.51
2925 3756 1.378882 CCGCAATGACACCAGGGATG 61.379 60.000 0.00 0.00 0.00 3.51
2926 3757 1.077501 CCGCAATGACACCAGGGAT 60.078 57.895 0.00 0.00 0.00 3.85
2927 3758 2.350895 CCGCAATGACACCAGGGA 59.649 61.111 0.00 0.00 0.00 4.20
2928 3759 2.751436 CCCGCAATGACACCAGGG 60.751 66.667 0.00 0.00 0.00 4.45
2929 3760 3.443045 GCCCGCAATGACACCAGG 61.443 66.667 0.00 0.00 0.00 4.45
2930 3761 2.203972 CTTGCCCGCAATGACACCAG 62.204 60.000 1.98 0.00 35.20 4.00
2931 3762 2.203408 TTGCCCGCAATGACACCA 60.203 55.556 0.00 0.00 0.00 4.17
2932 3763 2.568090 CTTGCCCGCAATGACACC 59.432 61.111 1.98 0.00 35.20 4.16
2933 3764 2.126346 GCTTGCCCGCAATGACAC 60.126 61.111 1.98 0.00 35.20 3.67
2934 3765 3.372730 GGCTTGCCCGCAATGACA 61.373 61.111 1.98 0.00 35.20 3.58
2935 3766 3.372730 TGGCTTGCCCGCAATGAC 61.373 61.111 9.35 0.61 35.20 3.06
2936 3767 3.372730 GTGGCTTGCCCGCAATGA 61.373 61.111 9.35 0.00 43.83 2.57
2945 3776 3.431725 GTACGGGCTGTGGCTTGC 61.432 66.667 9.79 0.00 38.73 4.01
2946 3777 3.118454 CGTACGGGCTGTGGCTTG 61.118 66.667 9.79 0.00 38.73 4.01
2947 3778 3.173167 AACGTACGGGCTGTGGCTT 62.173 57.895 21.06 0.00 38.73 4.35
2948 3779 3.622826 AACGTACGGGCTGTGGCT 61.623 61.111 21.06 0.00 38.73 4.75
2949 3780 3.419759 CAACGTACGGGCTGTGGC 61.420 66.667 21.06 0.81 37.82 5.01
2950 3781 3.419759 GCAACGTACGGGCTGTGG 61.420 66.667 21.06 3.39 0.00 4.17
2951 3782 2.032634 ATGCAACGTACGGGCTGTG 61.033 57.895 26.87 15.09 0.00 3.66
2952 3783 2.032634 CATGCAACGTACGGGCTGT 61.033 57.895 26.87 16.74 0.00 4.40
2953 3784 1.295357 TTCATGCAACGTACGGGCTG 61.295 55.000 26.87 22.11 0.00 4.85
2954 3785 1.004320 TTCATGCAACGTACGGGCT 60.004 52.632 26.87 14.58 0.00 5.19
2955 3786 1.133869 GTTCATGCAACGTACGGGC 59.866 57.895 21.06 21.81 0.00 6.13
2956 3787 0.951525 TGGTTCATGCAACGTACGGG 60.952 55.000 21.06 12.41 35.59 5.28
2957 3788 1.083489 ATGGTTCATGCAACGTACGG 58.917 50.000 21.06 3.45 35.59 4.02
2958 3789 3.369756 AGTTATGGTTCATGCAACGTACG 59.630 43.478 15.01 15.01 35.59 3.67
2959 3790 4.939509 AGTTATGGTTCATGCAACGTAC 57.060 40.909 0.00 0.00 35.59 3.67
2960 3791 5.242434 AGAAGTTATGGTTCATGCAACGTA 58.758 37.500 0.00 0.00 35.59 3.57
2961 3792 4.072131 AGAAGTTATGGTTCATGCAACGT 58.928 39.130 0.00 0.00 35.59 3.99
2962 3793 4.685169 AGAAGTTATGGTTCATGCAACG 57.315 40.909 0.00 0.00 35.59 4.10
2963 3794 6.681777 AGAAAGAAGTTATGGTTCATGCAAC 58.318 36.000 0.00 0.00 0.00 4.17
2964 3795 6.071952 GGAGAAAGAAGTTATGGTTCATGCAA 60.072 38.462 0.00 0.00 0.00 4.08
2965 3796 5.415701 GGAGAAAGAAGTTATGGTTCATGCA 59.584 40.000 0.00 0.00 0.00 3.96
2966 3797 5.649831 AGGAGAAAGAAGTTATGGTTCATGC 59.350 40.000 0.00 0.00 0.00 4.06
2967 3798 6.881065 TGAGGAGAAAGAAGTTATGGTTCATG 59.119 38.462 0.00 0.00 0.00 3.07
2968 3799 7.020827 TGAGGAGAAAGAAGTTATGGTTCAT 57.979 36.000 0.00 0.00 0.00 2.57
2969 3800 6.433847 TGAGGAGAAAGAAGTTATGGTTCA 57.566 37.500 0.00 0.00 0.00 3.18
2970 3801 7.106239 TGATGAGGAGAAAGAAGTTATGGTTC 58.894 38.462 0.00 0.00 0.00 3.62
2971 3802 7.020827 TGATGAGGAGAAAGAAGTTATGGTT 57.979 36.000 0.00 0.00 0.00 3.67
2972 3803 6.627087 TGATGAGGAGAAAGAAGTTATGGT 57.373 37.500 0.00 0.00 0.00 3.55
2973 3804 8.404000 CAAATGATGAGGAGAAAGAAGTTATGG 58.596 37.037 0.00 0.00 0.00 2.74
2974 3805 8.954350 ACAAATGATGAGGAGAAAGAAGTTATG 58.046 33.333 0.00 0.00 0.00 1.90
2975 3806 8.954350 CACAAATGATGAGGAGAAAGAAGTTAT 58.046 33.333 0.00 0.00 0.00 1.89
2976 3807 7.094634 GCACAAATGATGAGGAGAAAGAAGTTA 60.095 37.037 0.00 0.00 0.00 2.24
2977 3808 6.294397 GCACAAATGATGAGGAGAAAGAAGTT 60.294 38.462 0.00 0.00 0.00 2.66
2978 3809 5.182760 GCACAAATGATGAGGAGAAAGAAGT 59.817 40.000 0.00 0.00 0.00 3.01
2979 3810 5.392811 GGCACAAATGATGAGGAGAAAGAAG 60.393 44.000 0.00 0.00 0.00 2.85
2980 3811 4.460382 GGCACAAATGATGAGGAGAAAGAA 59.540 41.667 0.00 0.00 0.00 2.52
2981 3812 4.012374 GGCACAAATGATGAGGAGAAAGA 58.988 43.478 0.00 0.00 0.00 2.52
2982 3813 3.129988 GGGCACAAATGATGAGGAGAAAG 59.870 47.826 0.00 0.00 0.00 2.62
2983 3814 3.091545 GGGCACAAATGATGAGGAGAAA 58.908 45.455 0.00 0.00 0.00 2.52
2984 3815 2.041485 TGGGCACAAATGATGAGGAGAA 59.959 45.455 0.00 0.00 0.00 2.87
2985 3816 1.634973 TGGGCACAAATGATGAGGAGA 59.365 47.619 0.00 0.00 0.00 3.71
2986 3817 1.747355 GTGGGCACAAATGATGAGGAG 59.253 52.381 0.00 0.00 0.00 3.69
2987 3818 1.075212 TGTGGGCACAAATGATGAGGA 59.925 47.619 0.00 0.00 38.56 3.71
2988 3819 1.548081 TGTGGGCACAAATGATGAGG 58.452 50.000 0.00 0.00 38.56 3.86
2998 3829 1.756172 CAGGTGGTTTGTGGGCACA 60.756 57.895 0.00 0.00 39.98 4.57
2999 3830 2.498056 CCAGGTGGTTTGTGGGCAC 61.498 63.158 0.00 0.00 0.00 5.01
3000 3831 2.123511 CCAGGTGGTTTGTGGGCA 60.124 61.111 0.00 0.00 0.00 5.36
3001 3832 2.917227 CCCAGGTGGTTTGTGGGC 60.917 66.667 0.00 0.00 44.60 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.