Multiple sequence alignment - TraesCS7B01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G191900 chr7B 100.000 2408 0 0 1 2408 329798068 329795661 0.000000e+00 4447.0
1 TraesCS7B01G191900 chr7B 98.333 60 1 0 19 78 559708074 559708015 3.270000e-19 106.0
2 TraesCS7B01G191900 chr7D 94.261 2056 82 11 372 2403 186830896 186828853 0.000000e+00 3110.0
3 TraesCS7B01G191900 chr7A 92.861 2045 79 16 399 2403 198189386 198191403 0.000000e+00 2905.0
4 TraesCS7B01G191900 chr7A 94.444 990 44 4 612 1598 198025708 198026689 0.000000e+00 1513.0
5 TraesCS7B01G191900 chr7A 87.764 237 23 3 377 613 198016979 198017209 3.050000e-69 272.0
6 TraesCS7B01G191900 chr7A 87.097 155 14 2 248 397 198188455 198188608 1.140000e-38 171.0
7 TraesCS7B01G191900 chr3A 97.500 80 2 0 1 80 479697855 479697934 1.160000e-28 137.0
8 TraesCS7B01G191900 chr5B 97.468 79 2 0 1 79 57125128 57125050 4.180000e-28 135.0
9 TraesCS7B01G191900 chr5B 97.468 79 2 0 1 79 598130993 598131071 4.180000e-28 135.0
10 TraesCS7B01G191900 chr5B 93.750 48 3 0 31 78 672195790 672195743 3.320000e-09 73.1
11 TraesCS7B01G191900 chr5B 96.774 31 1 0 54 84 700438396 700438366 4.000000e-03 52.8
12 TraesCS7B01G191900 chr2B 96.341 82 3 0 1 82 656538539 656538458 4.180000e-28 135.0
13 TraesCS7B01G191900 chr3B 96.203 79 3 0 1 79 28259879 28259801 1.940000e-26 130.0
14 TraesCS7B01G191900 chr2D 94.595 74 4 0 7 80 453705742 453705669 5.440000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G191900 chr7B 329795661 329798068 2407 True 4447 4447 100.000 1 2408 1 chr7B.!!$R1 2407
1 TraesCS7B01G191900 chr7D 186828853 186830896 2043 True 3110 3110 94.261 372 2403 1 chr7D.!!$R1 2031
2 TraesCS7B01G191900 chr7A 198188455 198191403 2948 False 1538 2905 89.979 248 2403 2 chr7A.!!$F3 2155
3 TraesCS7B01G191900 chr7A 198025708 198026689 981 False 1513 1513 94.444 612 1598 1 chr7A.!!$F2 986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.032130 TCATAATCGTCCTCGCTGCC 59.968 55.0 0.0 0.00 36.96 4.85 F
574 1356 0.249447 TACATTGGGAGCGCGAGATG 60.249 55.0 12.1 6.28 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1066 1872 3.272439 TGCGAAAGTTGAAGCATGAAG 57.728 42.857 0.0 0.0 34.39 3.02 R
2261 3091 1.192146 TCTTCAACCTCTGACCCCCG 61.192 60.000 0.0 0.0 32.21 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.207669 CGGGAGGGGTCGTACGAG 61.208 72.222 20.18 0.00 0.00 4.18
19 20 2.273449 GGGAGGGGTCGTACGAGA 59.727 66.667 20.18 0.00 0.00 4.04
20 21 1.823041 GGGAGGGGTCGTACGAGAG 60.823 68.421 20.18 0.00 0.00 3.20
21 22 1.823041 GGAGGGGTCGTACGAGAGG 60.823 68.421 20.18 0.00 0.00 3.69
22 23 2.439883 AGGGGTCGTACGAGAGGC 60.440 66.667 20.18 6.64 0.00 4.70
23 24 2.439883 GGGGTCGTACGAGAGGCT 60.440 66.667 20.18 0.00 0.00 4.58
24 25 2.050934 GGGGTCGTACGAGAGGCTT 61.051 63.158 20.18 0.00 0.00 4.35
25 26 1.139095 GGGTCGTACGAGAGGCTTG 59.861 63.158 20.18 0.00 0.00 4.01
26 27 1.310933 GGGTCGTACGAGAGGCTTGA 61.311 60.000 20.18 0.00 0.00 3.02
27 28 0.179169 GGTCGTACGAGAGGCTTGAC 60.179 60.000 20.18 3.67 0.00 3.18
28 29 0.520827 GTCGTACGAGAGGCTTGACG 60.521 60.000 20.18 0.00 0.00 4.35
29 30 0.671472 TCGTACGAGAGGCTTGACGA 60.671 55.000 15.28 9.97 37.01 4.20
30 31 0.167470 CGTACGAGAGGCTTGACGAA 59.833 55.000 10.44 0.00 32.20 3.85
31 32 1.615502 GTACGAGAGGCTTGACGAAC 58.384 55.000 13.73 0.00 0.00 3.95
32 33 0.167470 TACGAGAGGCTTGACGAACG 59.833 55.000 13.73 0.00 0.00 3.95
33 34 1.081376 CGAGAGGCTTGACGAACGT 60.081 57.895 0.00 0.00 0.00 3.99
34 35 0.167470 CGAGAGGCTTGACGAACGTA 59.833 55.000 0.00 0.00 0.00 3.57
35 36 1.400629 CGAGAGGCTTGACGAACGTAA 60.401 52.381 0.00 0.00 0.00 3.18
37 38 1.884579 AGAGGCTTGACGAACGTAAGA 59.115 47.619 15.05 0.99 43.62 2.10
38 39 2.095161 AGAGGCTTGACGAACGTAAGAG 60.095 50.000 15.05 8.97 43.62 2.85
39 40 1.067776 AGGCTTGACGAACGTAAGAGG 60.068 52.381 15.05 1.70 43.62 3.69
40 41 1.068055 GGCTTGACGAACGTAAGAGGA 60.068 52.381 15.05 0.00 43.62 3.71
41 42 2.251893 GCTTGACGAACGTAAGAGGAG 58.748 52.381 15.05 0.88 43.62 3.69
42 43 2.095364 GCTTGACGAACGTAAGAGGAGA 60.095 50.000 15.05 0.00 43.62 3.71
43 44 3.611057 GCTTGACGAACGTAAGAGGAGAA 60.611 47.826 15.05 0.00 43.62 2.87
44 45 4.543692 CTTGACGAACGTAAGAGGAGAAA 58.456 43.478 0.00 0.00 43.62 2.52
45 46 3.893720 TGACGAACGTAAGAGGAGAAAC 58.106 45.455 0.00 0.00 43.62 2.78
46 47 2.907392 GACGAACGTAAGAGGAGAAACG 59.093 50.000 0.00 0.00 43.62 3.60
47 48 2.248487 CGAACGTAAGAGGAGAAACGG 58.752 52.381 0.00 0.00 39.57 4.44
48 49 2.095567 CGAACGTAAGAGGAGAAACGGA 60.096 50.000 0.00 0.00 39.57 4.69
49 50 3.610114 CGAACGTAAGAGGAGAAACGGAA 60.610 47.826 0.00 0.00 39.57 4.30
50 51 3.294816 ACGTAAGAGGAGAAACGGAAC 57.705 47.619 0.00 0.00 39.57 3.62
74 75 7.978982 ACGCTACGTTTCTTTTAGATAGTAGA 58.021 34.615 0.00 0.00 36.35 2.59
75 76 8.121708 ACGCTACGTTTCTTTTAGATAGTAGAG 58.878 37.037 0.00 12.41 36.35 2.43
76 77 8.333908 CGCTACGTTTCTTTTAGATAGTAGAGA 58.666 37.037 0.00 0.00 32.88 3.10
91 92 9.594936 AGATAGTAGAGATTAGGCTACAACATT 57.405 33.333 0.00 0.00 39.48 2.71
92 93 9.849166 GATAGTAGAGATTAGGCTACAACATTC 57.151 37.037 0.00 0.00 39.48 2.67
93 94 7.906199 AGTAGAGATTAGGCTACAACATTCT 57.094 36.000 0.00 0.00 39.48 2.40
94 95 8.312669 AGTAGAGATTAGGCTACAACATTCTT 57.687 34.615 0.00 0.00 39.48 2.52
95 96 8.763601 AGTAGAGATTAGGCTACAACATTCTTT 58.236 33.333 0.00 0.00 39.48 2.52
96 97 7.856145 AGAGATTAGGCTACAACATTCTTTG 57.144 36.000 0.00 0.00 0.00 2.77
97 98 7.624549 AGAGATTAGGCTACAACATTCTTTGA 58.375 34.615 0.00 0.00 0.00 2.69
98 99 8.270744 AGAGATTAGGCTACAACATTCTTTGAT 58.729 33.333 0.00 0.00 0.00 2.57
99 100 8.814038 AGATTAGGCTACAACATTCTTTGATT 57.186 30.769 0.00 0.00 0.00 2.57
100 101 9.247861 AGATTAGGCTACAACATTCTTTGATTT 57.752 29.630 0.00 0.00 0.00 2.17
101 102 9.860898 GATTAGGCTACAACATTCTTTGATTTT 57.139 29.630 0.00 0.00 0.00 1.82
104 105 8.409358 AGGCTACAACATTCTTTGATTTTACT 57.591 30.769 0.00 0.00 0.00 2.24
105 106 8.860088 AGGCTACAACATTCTTTGATTTTACTT 58.140 29.630 0.00 0.00 0.00 2.24
106 107 9.476202 GGCTACAACATTCTTTGATTTTACTTT 57.524 29.630 0.00 0.00 0.00 2.66
117 118 9.736023 TCTTTGATTTTACTTTCTTCTTCTTGC 57.264 29.630 0.00 0.00 0.00 4.01
118 119 9.520204 CTTTGATTTTACTTTCTTCTTCTTGCA 57.480 29.630 0.00 0.00 0.00 4.08
120 121 9.683069 TTGATTTTACTTTCTTCTTCTTGCATC 57.317 29.630 0.00 0.00 0.00 3.91
121 122 8.017373 TGATTTTACTTTCTTCTTCTTGCATCG 58.983 33.333 0.00 0.00 0.00 3.84
122 123 5.862924 TTACTTTCTTCTTCTTGCATCGG 57.137 39.130 0.00 0.00 0.00 4.18
123 124 4.008074 ACTTTCTTCTTCTTGCATCGGA 57.992 40.909 0.00 0.00 0.00 4.55
124 125 3.999663 ACTTTCTTCTTCTTGCATCGGAG 59.000 43.478 0.00 0.00 0.00 4.63
125 126 3.685139 TTCTTCTTCTTGCATCGGAGT 57.315 42.857 0.00 0.00 0.00 3.85
126 127 4.801330 TTCTTCTTCTTGCATCGGAGTA 57.199 40.909 0.00 0.00 0.00 2.59
127 128 5.344743 TTCTTCTTCTTGCATCGGAGTAT 57.655 39.130 0.00 0.00 0.00 2.12
128 129 4.686972 TCTTCTTCTTGCATCGGAGTATG 58.313 43.478 0.00 0.00 0.00 2.39
134 135 2.846371 GCATCGGAGTATGCCCATC 58.154 57.895 0.00 0.00 45.31 3.51
135 136 0.035317 GCATCGGAGTATGCCCATCA 59.965 55.000 0.00 0.00 45.31 3.07
136 137 1.339438 GCATCGGAGTATGCCCATCAT 60.339 52.381 0.00 0.00 45.31 2.45
137 138 2.625737 CATCGGAGTATGCCCATCATC 58.374 52.381 0.00 0.00 36.63 2.92
138 139 0.603065 TCGGAGTATGCCCATCATCG 59.397 55.000 0.00 0.00 36.63 3.84
139 140 0.603065 CGGAGTATGCCCATCATCGA 59.397 55.000 0.00 0.00 36.63 3.59
140 141 1.670087 CGGAGTATGCCCATCATCGAC 60.670 57.143 0.00 0.00 36.63 4.20
141 142 1.670087 GGAGTATGCCCATCATCGACG 60.670 57.143 0.00 0.00 36.63 5.12
142 143 1.269723 GAGTATGCCCATCATCGACGA 59.730 52.381 0.00 0.00 36.63 4.20
143 144 1.895798 AGTATGCCCATCATCGACGAT 59.104 47.619 4.05 4.05 36.63 3.73
144 145 2.094494 AGTATGCCCATCATCGACGATC 60.094 50.000 7.54 0.00 36.63 3.69
145 146 0.681175 ATGCCCATCATCGACGATCA 59.319 50.000 7.54 0.00 0.00 2.92
146 147 0.681175 TGCCCATCATCGACGATCAT 59.319 50.000 7.54 0.00 0.00 2.45
147 148 1.337167 TGCCCATCATCGACGATCATC 60.337 52.381 7.54 0.00 0.00 2.92
148 149 1.622232 CCCATCATCGACGATCATCG 58.378 55.000 7.54 5.22 46.93 3.84
154 155 1.866925 TCGACGATCATCGATCCCG 59.133 57.895 15.60 11.23 45.84 5.14
155 156 1.154207 CGACGATCATCGATCCCGG 60.154 63.158 15.60 0.00 45.13 5.73
156 157 1.444553 GACGATCATCGATCCCGGC 60.445 63.158 15.60 7.81 43.74 6.13
157 158 2.142357 GACGATCATCGATCCCGGCA 62.142 60.000 15.60 0.00 43.74 5.69
158 159 1.734477 CGATCATCGATCCCGGCAC 60.734 63.158 0.00 0.00 43.74 5.01
159 160 1.668294 GATCATCGATCCCGGCACT 59.332 57.895 0.00 0.00 33.37 4.40
160 161 0.668706 GATCATCGATCCCGGCACTG 60.669 60.000 0.00 0.00 33.37 3.66
161 162 1.115326 ATCATCGATCCCGGCACTGA 61.115 55.000 0.00 0.00 36.24 3.41
162 163 1.115326 TCATCGATCCCGGCACTGAT 61.115 55.000 0.00 0.00 36.24 2.90
163 164 0.668706 CATCGATCCCGGCACTGATC 60.669 60.000 0.00 1.67 35.19 2.92
164 165 1.821061 ATCGATCCCGGCACTGATCC 61.821 60.000 11.44 0.00 35.09 3.36
165 166 2.796193 CGATCCCGGCACTGATCCA 61.796 63.158 11.44 0.00 35.09 3.41
166 167 1.757306 GATCCCGGCACTGATCCAT 59.243 57.895 0.00 0.00 32.92 3.41
167 168 0.604780 GATCCCGGCACTGATCCATG 60.605 60.000 0.00 0.00 32.92 3.66
168 169 2.687418 ATCCCGGCACTGATCCATGC 62.687 60.000 9.29 9.29 41.29 4.06
169 170 2.191375 CCGGCACTGATCCATGCT 59.809 61.111 15.60 0.00 41.74 3.79
170 171 1.452651 CCGGCACTGATCCATGCTT 60.453 57.895 15.60 0.00 41.74 3.91
171 172 0.179048 CCGGCACTGATCCATGCTTA 60.179 55.000 15.60 0.00 41.74 3.09
172 173 0.940126 CGGCACTGATCCATGCTTAC 59.060 55.000 15.60 1.92 41.74 2.34
173 174 1.473965 CGGCACTGATCCATGCTTACT 60.474 52.381 15.60 0.00 41.74 2.24
174 175 2.216898 GGCACTGATCCATGCTTACTC 58.783 52.381 15.60 0.00 41.74 2.59
175 176 2.158842 GGCACTGATCCATGCTTACTCT 60.159 50.000 15.60 0.00 41.74 3.24
176 177 3.129871 GCACTGATCCATGCTTACTCTC 58.870 50.000 10.29 0.00 38.84 3.20
177 178 3.431346 GCACTGATCCATGCTTACTCTCA 60.431 47.826 10.29 0.00 38.84 3.27
178 179 4.743045 GCACTGATCCATGCTTACTCTCAT 60.743 45.833 10.29 0.00 38.84 2.90
179 180 5.510349 GCACTGATCCATGCTTACTCTCATA 60.510 44.000 10.29 0.00 38.84 2.15
180 181 6.519382 CACTGATCCATGCTTACTCTCATAA 58.481 40.000 0.00 0.00 0.00 1.90
181 182 7.160049 CACTGATCCATGCTTACTCTCATAAT 58.840 38.462 0.00 0.00 0.00 1.28
182 183 7.331440 CACTGATCCATGCTTACTCTCATAATC 59.669 40.741 0.00 0.00 0.00 1.75
183 184 6.393171 TGATCCATGCTTACTCTCATAATCG 58.607 40.000 0.00 0.00 0.00 3.34
184 185 5.791336 TCCATGCTTACTCTCATAATCGT 57.209 39.130 0.00 0.00 0.00 3.73
185 186 5.773575 TCCATGCTTACTCTCATAATCGTC 58.226 41.667 0.00 0.00 0.00 4.20
186 187 4.926238 CCATGCTTACTCTCATAATCGTCC 59.074 45.833 0.00 0.00 0.00 4.79
187 188 5.279206 CCATGCTTACTCTCATAATCGTCCT 60.279 44.000 0.00 0.00 0.00 3.85
188 189 5.440234 TGCTTACTCTCATAATCGTCCTC 57.560 43.478 0.00 0.00 0.00 3.71
189 190 4.023963 TGCTTACTCTCATAATCGTCCTCG 60.024 45.833 0.00 0.00 38.55 4.63
190 191 4.468643 CTTACTCTCATAATCGTCCTCGC 58.531 47.826 0.00 0.00 36.96 5.03
191 192 2.577700 ACTCTCATAATCGTCCTCGCT 58.422 47.619 0.00 0.00 36.96 4.93
192 193 2.292016 ACTCTCATAATCGTCCTCGCTG 59.708 50.000 0.00 0.00 36.96 5.18
193 194 1.001268 TCTCATAATCGTCCTCGCTGC 60.001 52.381 0.00 0.00 36.96 5.25
194 195 0.032130 TCATAATCGTCCTCGCTGCC 59.968 55.000 0.00 0.00 36.96 4.85
195 196 1.007271 ATAATCGTCCTCGCTGCCG 60.007 57.895 0.00 0.00 36.96 5.69
196 197 2.421877 ATAATCGTCCTCGCTGCCGG 62.422 60.000 0.00 0.00 36.96 6.13
203 204 4.170062 CTCGCTGCCGGCATTGTG 62.170 66.667 32.87 25.46 41.91 3.33
205 206 3.124270 CGCTGCCGGCATTGTGTA 61.124 61.111 32.87 4.54 41.91 2.90
206 207 2.485122 GCTGCCGGCATTGTGTAC 59.515 61.111 32.87 9.78 41.35 2.90
207 208 2.040544 GCTGCCGGCATTGTGTACT 61.041 57.895 32.87 0.00 41.35 2.73
208 209 0.742990 GCTGCCGGCATTGTGTACTA 60.743 55.000 32.87 1.81 41.35 1.82
209 210 1.290203 CTGCCGGCATTGTGTACTAG 58.710 55.000 32.87 10.44 0.00 2.57
210 211 0.899019 TGCCGGCATTGTGTACTAGA 59.101 50.000 29.03 0.00 0.00 2.43
211 212 1.134818 TGCCGGCATTGTGTACTAGAG 60.135 52.381 29.03 0.00 0.00 2.43
212 213 1.134788 GCCGGCATTGTGTACTAGAGT 60.135 52.381 24.80 0.00 0.00 3.24
213 214 2.810650 CCGGCATTGTGTACTAGAGTC 58.189 52.381 0.00 0.00 0.00 3.36
214 215 2.427453 CCGGCATTGTGTACTAGAGTCT 59.573 50.000 0.00 0.00 0.00 3.24
215 216 3.489398 CCGGCATTGTGTACTAGAGTCTC 60.489 52.174 0.00 0.00 0.00 3.36
216 217 3.128764 CGGCATTGTGTACTAGAGTCTCA 59.871 47.826 0.00 0.00 0.00 3.27
217 218 4.202060 CGGCATTGTGTACTAGAGTCTCAT 60.202 45.833 0.00 0.00 0.00 2.90
218 219 5.046529 GGCATTGTGTACTAGAGTCTCATG 58.953 45.833 0.00 0.00 0.00 3.07
219 220 5.163509 GGCATTGTGTACTAGAGTCTCATGA 60.164 44.000 0.00 0.00 0.00 3.07
220 221 5.746245 GCATTGTGTACTAGAGTCTCATGAC 59.254 44.000 0.00 0.00 43.22 3.06
221 222 6.625960 GCATTGTGTACTAGAGTCTCATGACA 60.626 42.308 0.00 0.00 45.20 3.58
222 223 7.487484 CATTGTGTACTAGAGTCTCATGACAT 58.513 38.462 0.00 0.00 45.20 3.06
223 224 8.624776 CATTGTGTACTAGAGTCTCATGACATA 58.375 37.037 0.00 0.00 45.20 2.29
224 225 7.555306 TGTGTACTAGAGTCTCATGACATAC 57.445 40.000 0.00 0.00 45.20 2.39
225 226 7.110155 TGTGTACTAGAGTCTCATGACATACA 58.890 38.462 0.00 0.00 45.20 2.29
226 227 7.065923 TGTGTACTAGAGTCTCATGACATACAC 59.934 40.741 0.00 15.62 45.20 2.90
227 228 7.065923 GTGTACTAGAGTCTCATGACATACACA 59.934 40.741 16.64 0.00 45.20 3.72
228 229 7.610305 TGTACTAGAGTCTCATGACATACACAA 59.390 37.037 0.00 0.00 45.20 3.33
229 230 7.468141 ACTAGAGTCTCATGACATACACAAA 57.532 36.000 0.00 0.00 45.20 2.83
230 231 7.542890 ACTAGAGTCTCATGACATACACAAAG 58.457 38.462 0.00 0.00 45.20 2.77
231 232 6.596309 AGAGTCTCATGACATACACAAAGA 57.404 37.500 1.94 0.00 45.20 2.52
232 233 7.180322 AGAGTCTCATGACATACACAAAGAT 57.820 36.000 1.94 0.00 45.20 2.40
233 234 7.264221 AGAGTCTCATGACATACACAAAGATC 58.736 38.462 1.94 0.00 45.20 2.75
234 235 7.123997 AGAGTCTCATGACATACACAAAGATCT 59.876 37.037 1.94 0.00 45.20 2.75
235 236 8.298729 AGTCTCATGACATACACAAAGATCTA 57.701 34.615 0.00 0.00 45.20 1.98
236 237 8.412456 AGTCTCATGACATACACAAAGATCTAG 58.588 37.037 0.00 0.00 45.20 2.43
237 238 8.194104 GTCTCATGACATACACAAAGATCTAGT 58.806 37.037 0.00 0.00 42.48 2.57
238 239 8.753133 TCTCATGACATACACAAAGATCTAGTT 58.247 33.333 0.00 0.00 0.00 2.24
239 240 9.376075 CTCATGACATACACAAAGATCTAGTTT 57.624 33.333 0.00 0.00 0.00 2.66
240 241 9.154847 TCATGACATACACAAAGATCTAGTTTG 57.845 33.333 0.00 0.00 40.18 2.93
241 242 9.154847 CATGACATACACAAAGATCTAGTTTGA 57.845 33.333 11.68 0.00 38.13 2.69
242 243 8.763049 TGACATACACAAAGATCTAGTTTGAG 57.237 34.615 11.68 6.99 38.13 3.02
243 244 7.331934 TGACATACACAAAGATCTAGTTTGAGC 59.668 37.037 11.68 5.99 38.13 4.26
244 245 6.595716 ACATACACAAAGATCTAGTTTGAGCC 59.404 38.462 11.68 0.00 38.13 4.70
245 246 4.973168 ACACAAAGATCTAGTTTGAGCCA 58.027 39.130 11.68 0.00 38.13 4.75
246 247 4.757149 ACACAAAGATCTAGTTTGAGCCAC 59.243 41.667 11.68 0.00 38.13 5.01
249 250 3.618690 AGATCTAGTTTGAGCCACACC 57.381 47.619 0.00 0.00 0.00 4.16
252 253 1.765904 TCTAGTTTGAGCCACACCACA 59.234 47.619 0.00 0.00 0.00 4.17
264 265 1.064003 ACACCACAGAAGGGTATGCA 58.936 50.000 0.00 0.00 36.72 3.96
273 274 2.890945 AGAAGGGTATGCAAAACACACC 59.109 45.455 7.48 0.99 45.87 4.16
352 358 5.777732 AGTAAACAAATCCTGGCCATAAACA 59.222 36.000 5.51 0.00 0.00 2.83
354 360 5.343307 AACAAATCCTGGCCATAAACATC 57.657 39.130 5.51 0.00 0.00 3.06
356 362 3.576078 AATCCTGGCCATAAACATCGA 57.424 42.857 5.51 0.00 0.00 3.59
359 365 2.172505 TCCTGGCCATAAACATCGATGT 59.827 45.455 25.18 25.18 44.20 3.06
507 1289 5.060506 TCGGCTACAAAACTTCTTCAATCA 58.939 37.500 0.00 0.00 0.00 2.57
511 1293 6.385033 GCTACAAAACTTCTTCAATCATGCT 58.615 36.000 0.00 0.00 0.00 3.79
514 1296 7.047460 ACAAAACTTCTTCAATCATGCTCTT 57.953 32.000 0.00 0.00 0.00 2.85
517 1299 8.823818 CAAAACTTCTTCAATCATGCTCTTTTT 58.176 29.630 0.00 0.00 0.00 1.94
574 1356 0.249447 TACATTGGGAGCGCGAGATG 60.249 55.000 12.10 6.28 0.00 2.90
722 1527 9.536558 CAAATTCATGAATAACAATTGCAAGTG 57.463 29.630 24.24 24.24 0.00 3.16
774 1579 5.183228 GCACTAGCCTATTTTTAGTCACCA 58.817 41.667 0.00 0.00 33.58 4.17
775 1580 5.823045 GCACTAGCCTATTTTTAGTCACCAT 59.177 40.000 0.00 0.00 33.58 3.55
881 1687 2.543641 GAAATTGCCTGGCTGTATTGC 58.456 47.619 21.03 11.37 0.00 3.56
1066 1872 3.125316 CCAATGCCGTAAGAGTTCTTGTC 59.875 47.826 4.67 0.00 43.02 3.18
1430 2236 8.033626 GTGATTCACATGCTATATGATCAGAGA 58.966 37.037 11.93 0.00 34.08 3.10
1553 2365 6.944862 AGGATCTTGTAAGCAGATGTTTTTCT 59.055 34.615 0.00 0.00 0.00 2.52
1554 2366 7.449704 AGGATCTTGTAAGCAGATGTTTTTCTT 59.550 33.333 0.00 0.00 0.00 2.52
1555 2367 7.752686 GGATCTTGTAAGCAGATGTTTTTCTTC 59.247 37.037 0.00 0.00 0.00 2.87
1659 2485 7.065803 ACCAAAATCTCACATCGTTTACATAGG 59.934 37.037 0.00 0.00 0.00 2.57
1722 2548 8.767085 GCAATCAAATGAATGAAGAGTGAAAAA 58.233 29.630 2.71 0.00 32.06 1.94
1766 2592 6.319405 TGGATCAATCAACATATGGTCAAGTG 59.681 38.462 7.80 0.83 0.00 3.16
1775 2601 5.431765 ACATATGGTCAAGTGATCCAGTTC 58.568 41.667 7.80 0.00 34.62 3.01
2297 3127 1.150536 GAAGAGTTGGTGGTGGGCA 59.849 57.895 0.00 0.00 0.00 5.36
2324 3157 0.741915 GAGGCCTCTCTCTAACGTGG 59.258 60.000 26.25 0.00 37.07 4.94
2341 3174 1.931172 GTGGGTGCATGTACGTGATAC 59.069 52.381 19.38 15.10 0.00 2.24
2373 3214 2.185004 AGGTTGTTGGAGATGAACGG 57.815 50.000 0.00 0.00 0.00 4.44
2403 3244 3.560896 GGCTAACTTTGAACACACCGTTA 59.439 43.478 0.00 0.00 38.19 3.18
2404 3245 4.035441 GGCTAACTTTGAACACACCGTTAA 59.965 41.667 0.00 0.00 38.19 2.01
2405 3246 5.278120 GGCTAACTTTGAACACACCGTTAAT 60.278 40.000 0.00 0.00 38.19 1.40
2406 3247 6.203647 GCTAACTTTGAACACACCGTTAATT 58.796 36.000 0.00 0.00 38.19 1.40
2407 3248 7.354257 GCTAACTTTGAACACACCGTTAATTA 58.646 34.615 0.00 0.00 38.19 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.207669 CTCGTACGACCCCTCCCG 61.208 72.222 15.28 0.00 0.00 5.14
2 3 1.823041 CTCTCGTACGACCCCTCCC 60.823 68.421 15.28 0.00 0.00 4.30
3 4 1.823041 CCTCTCGTACGACCCCTCC 60.823 68.421 15.28 0.00 0.00 4.30
4 5 2.479750 GCCTCTCGTACGACCCCTC 61.480 68.421 15.28 0.00 0.00 4.30
5 6 2.439883 GCCTCTCGTACGACCCCT 60.440 66.667 15.28 0.00 0.00 4.79
6 7 2.050934 AAGCCTCTCGTACGACCCC 61.051 63.158 15.28 3.20 0.00 4.95
7 8 1.139095 CAAGCCTCTCGTACGACCC 59.861 63.158 15.28 2.84 0.00 4.46
8 9 0.179169 GTCAAGCCTCTCGTACGACC 60.179 60.000 15.28 3.21 0.00 4.79
9 10 0.520827 CGTCAAGCCTCTCGTACGAC 60.521 60.000 15.28 4.53 32.35 4.34
10 11 0.671472 TCGTCAAGCCTCTCGTACGA 60.671 55.000 18.41 18.41 37.05 3.43
11 12 0.167470 TTCGTCAAGCCTCTCGTACG 59.833 55.000 9.53 9.53 0.00 3.67
12 13 1.615502 GTTCGTCAAGCCTCTCGTAC 58.384 55.000 0.00 0.00 0.00 3.67
13 14 0.167470 CGTTCGTCAAGCCTCTCGTA 59.833 55.000 0.00 0.00 0.00 3.43
14 15 1.081376 CGTTCGTCAAGCCTCTCGT 60.081 57.895 0.00 0.00 0.00 4.18
15 16 0.167470 TACGTTCGTCAAGCCTCTCG 59.833 55.000 0.00 0.00 0.00 4.04
16 17 2.095364 TCTTACGTTCGTCAAGCCTCTC 60.095 50.000 0.00 0.00 0.00 3.20
17 18 1.884579 TCTTACGTTCGTCAAGCCTCT 59.115 47.619 0.00 0.00 0.00 3.69
18 19 2.251893 CTCTTACGTTCGTCAAGCCTC 58.748 52.381 0.00 0.00 0.00 4.70
19 20 1.067776 CCTCTTACGTTCGTCAAGCCT 60.068 52.381 0.00 0.00 0.00 4.58
20 21 1.068055 TCCTCTTACGTTCGTCAAGCC 60.068 52.381 0.00 0.00 0.00 4.35
21 22 2.095364 TCTCCTCTTACGTTCGTCAAGC 60.095 50.000 0.00 0.00 0.00 4.01
22 23 3.826236 TCTCCTCTTACGTTCGTCAAG 57.174 47.619 0.00 5.02 0.00 3.02
23 24 4.293415 GTTTCTCCTCTTACGTTCGTCAA 58.707 43.478 0.00 0.00 0.00 3.18
24 25 3.607775 CGTTTCTCCTCTTACGTTCGTCA 60.608 47.826 0.00 0.00 0.00 4.35
25 26 2.907392 CGTTTCTCCTCTTACGTTCGTC 59.093 50.000 0.00 0.00 0.00 4.20
26 27 2.351157 CCGTTTCTCCTCTTACGTTCGT 60.351 50.000 0.00 2.91 32.45 3.85
27 28 2.095567 TCCGTTTCTCCTCTTACGTTCG 60.096 50.000 0.00 0.00 32.45 3.95
28 29 3.565905 TCCGTTTCTCCTCTTACGTTC 57.434 47.619 0.00 0.00 32.45 3.95
29 30 3.646946 GTTCCGTTTCTCCTCTTACGTT 58.353 45.455 0.00 0.00 32.45 3.99
30 31 2.351157 CGTTCCGTTTCTCCTCTTACGT 60.351 50.000 0.00 0.00 32.45 3.57
31 32 2.248487 CGTTCCGTTTCTCCTCTTACG 58.752 52.381 0.00 0.00 0.00 3.18
32 33 1.991264 GCGTTCCGTTTCTCCTCTTAC 59.009 52.381 0.00 0.00 0.00 2.34
33 34 1.891150 AGCGTTCCGTTTCTCCTCTTA 59.109 47.619 0.00 0.00 0.00 2.10
34 35 0.680061 AGCGTTCCGTTTCTCCTCTT 59.320 50.000 0.00 0.00 0.00 2.85
35 36 1.201880 GTAGCGTTCCGTTTCTCCTCT 59.798 52.381 0.00 0.00 0.00 3.69
36 37 1.626747 GTAGCGTTCCGTTTCTCCTC 58.373 55.000 0.00 0.00 0.00 3.71
37 38 0.109412 CGTAGCGTTCCGTTTCTCCT 60.109 55.000 0.00 0.00 0.00 3.69
38 39 0.387750 ACGTAGCGTTCCGTTTCTCC 60.388 55.000 0.00 0.00 36.35 3.71
39 40 3.098032 ACGTAGCGTTCCGTTTCTC 57.902 52.632 0.00 0.00 36.35 2.87
49 50 7.978982 TCTACTATCTAAAAGAAACGTAGCGT 58.021 34.615 0.00 0.00 43.97 5.07
50 51 8.333908 TCTCTACTATCTAAAAGAAACGTAGCG 58.666 37.037 0.00 0.00 29.88 4.26
65 66 9.594936 AATGTTGTAGCCTAATCTCTACTATCT 57.405 33.333 0.00 0.00 36.88 1.98
66 67 9.849166 GAATGTTGTAGCCTAATCTCTACTATC 57.151 37.037 0.00 0.00 36.88 2.08
67 68 9.594936 AGAATGTTGTAGCCTAATCTCTACTAT 57.405 33.333 0.00 0.00 36.88 2.12
68 69 8.998277 AGAATGTTGTAGCCTAATCTCTACTA 57.002 34.615 0.00 0.00 36.88 1.82
69 70 7.906199 AGAATGTTGTAGCCTAATCTCTACT 57.094 36.000 0.00 0.00 36.88 2.57
70 71 8.821894 CAAAGAATGTTGTAGCCTAATCTCTAC 58.178 37.037 0.00 0.00 36.58 2.59
71 72 8.758829 TCAAAGAATGTTGTAGCCTAATCTCTA 58.241 33.333 0.00 0.00 0.00 2.43
72 73 7.624549 TCAAAGAATGTTGTAGCCTAATCTCT 58.375 34.615 0.00 0.00 0.00 3.10
73 74 7.849804 TCAAAGAATGTTGTAGCCTAATCTC 57.150 36.000 0.00 0.00 0.00 2.75
74 75 8.814038 AATCAAAGAATGTTGTAGCCTAATCT 57.186 30.769 0.00 0.00 0.00 2.40
75 76 9.860898 AAAATCAAAGAATGTTGTAGCCTAATC 57.139 29.630 0.00 0.00 0.00 1.75
78 79 9.515226 AGTAAAATCAAAGAATGTTGTAGCCTA 57.485 29.630 0.00 0.00 0.00 3.93
79 80 8.409358 AGTAAAATCAAAGAATGTTGTAGCCT 57.591 30.769 0.00 0.00 0.00 4.58
80 81 9.476202 AAAGTAAAATCAAAGAATGTTGTAGCC 57.524 29.630 0.00 0.00 0.00 3.93
91 92 9.736023 GCAAGAAGAAGAAAGTAAAATCAAAGA 57.264 29.630 0.00 0.00 0.00 2.52
92 93 9.520204 TGCAAGAAGAAGAAAGTAAAATCAAAG 57.480 29.630 0.00 0.00 0.00 2.77
94 95 9.683069 GATGCAAGAAGAAGAAAGTAAAATCAA 57.317 29.630 0.00 0.00 0.00 2.57
95 96 8.017373 CGATGCAAGAAGAAGAAAGTAAAATCA 58.983 33.333 0.00 0.00 0.00 2.57
96 97 7.483059 CCGATGCAAGAAGAAGAAAGTAAAATC 59.517 37.037 0.00 0.00 0.00 2.17
97 98 7.174946 TCCGATGCAAGAAGAAGAAAGTAAAAT 59.825 33.333 0.00 0.00 0.00 1.82
98 99 6.485313 TCCGATGCAAGAAGAAGAAAGTAAAA 59.515 34.615 0.00 0.00 0.00 1.52
99 100 5.995282 TCCGATGCAAGAAGAAGAAAGTAAA 59.005 36.000 0.00 0.00 0.00 2.01
100 101 5.547465 TCCGATGCAAGAAGAAGAAAGTAA 58.453 37.500 0.00 0.00 0.00 2.24
101 102 5.147330 TCCGATGCAAGAAGAAGAAAGTA 57.853 39.130 0.00 0.00 0.00 2.24
102 103 3.999663 CTCCGATGCAAGAAGAAGAAAGT 59.000 43.478 0.00 0.00 0.00 2.66
103 104 3.999663 ACTCCGATGCAAGAAGAAGAAAG 59.000 43.478 0.00 0.00 0.00 2.62
104 105 4.008074 ACTCCGATGCAAGAAGAAGAAA 57.992 40.909 0.00 0.00 0.00 2.52
105 106 3.685139 ACTCCGATGCAAGAAGAAGAA 57.315 42.857 0.00 0.00 0.00 2.52
106 107 4.686972 CATACTCCGATGCAAGAAGAAGA 58.313 43.478 0.00 0.00 0.00 2.87
117 118 2.625737 GATGATGGGCATACTCCGATG 58.374 52.381 0.00 0.00 37.34 3.84
118 119 1.205655 CGATGATGGGCATACTCCGAT 59.794 52.381 0.00 0.00 37.34 4.18
119 120 0.603065 CGATGATGGGCATACTCCGA 59.397 55.000 0.00 0.00 37.34 4.55
120 121 0.603065 TCGATGATGGGCATACTCCG 59.397 55.000 0.00 0.00 37.34 4.63
121 122 1.670087 CGTCGATGATGGGCATACTCC 60.670 57.143 0.00 0.00 37.34 3.85
122 123 1.269723 TCGTCGATGATGGGCATACTC 59.730 52.381 2.39 0.00 37.34 2.59
123 124 1.328279 TCGTCGATGATGGGCATACT 58.672 50.000 2.39 0.00 37.34 2.12
124 125 2.263077 GATCGTCGATGATGGGCATAC 58.737 52.381 24.46 4.76 37.34 2.39
125 126 1.892474 TGATCGTCGATGATGGGCATA 59.108 47.619 24.46 1.72 37.34 3.14
126 127 0.681175 TGATCGTCGATGATGGGCAT 59.319 50.000 24.46 0.00 40.77 4.40
127 128 0.681175 ATGATCGTCGATGATGGGCA 59.319 50.000 24.46 16.02 0.00 5.36
128 129 1.354040 GATGATCGTCGATGATGGGC 58.646 55.000 24.46 10.91 0.00 5.36
129 130 1.200020 TCGATGATCGTCGATGATGGG 59.800 52.381 31.03 10.41 44.87 4.00
130 131 2.619013 TCGATGATCGTCGATGATGG 57.381 50.000 31.03 11.35 44.87 3.51
137 138 1.154207 CCGGGATCGATGATCGTCG 60.154 63.158 27.67 27.67 39.72 5.12
138 139 1.444553 GCCGGGATCGATGATCGTC 60.445 63.158 15.06 11.10 39.72 4.20
139 140 2.200337 TGCCGGGATCGATGATCGT 61.200 57.895 15.06 2.13 39.72 3.73
140 141 1.734477 GTGCCGGGATCGATGATCG 60.734 63.158 8.83 8.83 39.72 3.69
141 142 0.668706 CAGTGCCGGGATCGATGATC 60.669 60.000 0.54 0.00 38.25 2.92
142 143 1.115326 TCAGTGCCGGGATCGATGAT 61.115 55.000 0.54 0.00 39.00 2.45
143 144 1.115326 ATCAGTGCCGGGATCGATGA 61.115 55.000 0.54 4.51 39.00 2.92
144 145 0.668706 GATCAGTGCCGGGATCGATG 60.669 60.000 13.61 4.74 39.00 3.84
145 146 1.668294 GATCAGTGCCGGGATCGAT 59.332 57.895 2.18 6.69 39.00 3.59
146 147 2.498941 GGATCAGTGCCGGGATCGA 61.499 63.158 2.18 0.77 40.61 3.59
147 148 2.029666 GGATCAGTGCCGGGATCG 59.970 66.667 2.18 0.00 40.61 3.69
148 149 0.604780 CATGGATCAGTGCCGGGATC 60.605 60.000 2.18 6.74 39.31 3.36
149 150 1.453235 CATGGATCAGTGCCGGGAT 59.547 57.895 2.18 0.00 0.00 3.85
150 151 2.910360 CATGGATCAGTGCCGGGA 59.090 61.111 2.18 0.00 0.00 5.14
151 152 2.898920 AAGCATGGATCAGTGCCGGG 62.899 60.000 15.44 0.00 42.20 5.73
152 153 0.179048 TAAGCATGGATCAGTGCCGG 60.179 55.000 15.44 0.00 42.20 6.13
153 154 0.940126 GTAAGCATGGATCAGTGCCG 59.060 55.000 15.44 0.00 42.20 5.69
154 155 2.158842 AGAGTAAGCATGGATCAGTGCC 60.159 50.000 15.44 3.88 42.20 5.01
155 156 3.129871 GAGAGTAAGCATGGATCAGTGC 58.870 50.000 12.21 12.21 41.57 4.40
156 157 4.397481 TGAGAGTAAGCATGGATCAGTG 57.603 45.455 0.00 0.00 0.00 3.66
157 158 6.737720 TTATGAGAGTAAGCATGGATCAGT 57.262 37.500 0.00 0.00 0.00 3.41
158 159 6.530887 CGATTATGAGAGTAAGCATGGATCAG 59.469 42.308 0.00 0.00 0.00 2.90
159 160 6.015095 ACGATTATGAGAGTAAGCATGGATCA 60.015 38.462 0.00 0.00 0.00 2.92
160 161 6.393990 ACGATTATGAGAGTAAGCATGGATC 58.606 40.000 0.00 0.00 0.00 3.36
161 162 6.352016 ACGATTATGAGAGTAAGCATGGAT 57.648 37.500 0.00 0.00 0.00 3.41
162 163 5.279006 GGACGATTATGAGAGTAAGCATGGA 60.279 44.000 0.00 0.00 0.00 3.41
163 164 4.926238 GGACGATTATGAGAGTAAGCATGG 59.074 45.833 0.00 0.00 0.00 3.66
164 165 5.777802 AGGACGATTATGAGAGTAAGCATG 58.222 41.667 0.00 0.00 0.00 4.06
165 166 5.335269 CGAGGACGATTATGAGAGTAAGCAT 60.335 44.000 0.00 0.00 42.66 3.79
166 167 4.023963 CGAGGACGATTATGAGAGTAAGCA 60.024 45.833 0.00 0.00 42.66 3.91
167 168 4.468643 CGAGGACGATTATGAGAGTAAGC 58.531 47.826 0.00 0.00 42.66 3.09
168 169 4.214545 AGCGAGGACGATTATGAGAGTAAG 59.785 45.833 0.00 0.00 42.66 2.34
169 170 4.023963 CAGCGAGGACGATTATGAGAGTAA 60.024 45.833 0.00 0.00 42.66 2.24
170 171 3.498777 CAGCGAGGACGATTATGAGAGTA 59.501 47.826 0.00 0.00 42.66 2.59
171 172 2.292016 CAGCGAGGACGATTATGAGAGT 59.708 50.000 0.00 0.00 42.66 3.24
172 173 2.920227 GCAGCGAGGACGATTATGAGAG 60.920 54.545 0.00 0.00 42.66 3.20
173 174 1.001268 GCAGCGAGGACGATTATGAGA 60.001 52.381 0.00 0.00 42.66 3.27
174 175 1.413382 GCAGCGAGGACGATTATGAG 58.587 55.000 0.00 0.00 42.66 2.90
175 176 0.032130 GGCAGCGAGGACGATTATGA 59.968 55.000 0.00 0.00 42.66 2.15
176 177 1.278172 CGGCAGCGAGGACGATTATG 61.278 60.000 0.00 0.00 43.61 1.90
177 178 1.007271 CGGCAGCGAGGACGATTAT 60.007 57.895 0.00 0.00 43.61 1.28
178 179 2.411701 CGGCAGCGAGGACGATTA 59.588 61.111 0.00 0.00 43.61 1.75
179 180 4.514577 CCGGCAGCGAGGACGATT 62.515 66.667 3.37 0.00 43.61 3.34
189 190 0.742990 TAGTACACAATGCCGGCAGC 60.743 55.000 35.36 16.91 44.14 5.25
190 191 1.134818 TCTAGTACACAATGCCGGCAG 60.135 52.381 35.36 24.28 0.00 4.85
191 192 0.899019 TCTAGTACACAATGCCGGCA 59.101 50.000 34.80 34.80 0.00 5.69
192 193 1.134788 ACTCTAGTACACAATGCCGGC 60.135 52.381 22.73 22.73 0.00 6.13
193 194 2.427453 AGACTCTAGTACACAATGCCGG 59.573 50.000 0.00 0.00 0.00 6.13
194 195 3.128764 TGAGACTCTAGTACACAATGCCG 59.871 47.826 3.68 0.00 0.00 5.69
195 196 4.720649 TGAGACTCTAGTACACAATGCC 57.279 45.455 3.68 0.00 0.00 4.40
196 197 5.746245 GTCATGAGACTCTAGTACACAATGC 59.254 44.000 3.68 0.00 41.64 3.56
197 198 6.856895 TGTCATGAGACTCTAGTACACAATG 58.143 40.000 3.68 0.00 45.20 2.82
198 199 7.652524 ATGTCATGAGACTCTAGTACACAAT 57.347 36.000 3.68 0.00 45.20 2.71
199 200 7.610305 TGTATGTCATGAGACTCTAGTACACAA 59.390 37.037 3.68 0.00 45.20 3.33
200 201 7.065923 GTGTATGTCATGAGACTCTAGTACACA 59.934 40.741 19.44 3.30 45.20 3.72
201 202 7.065923 TGTGTATGTCATGAGACTCTAGTACAC 59.934 40.741 18.32 18.32 45.20 2.90
202 203 7.110155 TGTGTATGTCATGAGACTCTAGTACA 58.890 38.462 3.68 0.00 45.20 2.90
203 204 7.555306 TGTGTATGTCATGAGACTCTAGTAC 57.445 40.000 3.68 0.00 45.20 2.73
204 205 8.575649 TTTGTGTATGTCATGAGACTCTAGTA 57.424 34.615 3.68 0.00 45.20 1.82
205 206 7.394641 TCTTTGTGTATGTCATGAGACTCTAGT 59.605 37.037 3.68 0.00 45.20 2.57
206 207 7.766283 TCTTTGTGTATGTCATGAGACTCTAG 58.234 38.462 3.68 0.00 45.20 2.43
207 208 7.703058 TCTTTGTGTATGTCATGAGACTCTA 57.297 36.000 3.68 0.00 45.20 2.43
208 209 6.596309 TCTTTGTGTATGTCATGAGACTCT 57.404 37.500 3.68 0.00 45.20 3.24
209 210 7.264221 AGATCTTTGTGTATGTCATGAGACTC 58.736 38.462 0.00 0.00 45.20 3.36
210 211 7.180322 AGATCTTTGTGTATGTCATGAGACT 57.820 36.000 0.00 0.00 45.20 3.24
211 212 8.194104 ACTAGATCTTTGTGTATGTCATGAGAC 58.806 37.037 0.00 0.00 45.19 3.36
212 213 8.298729 ACTAGATCTTTGTGTATGTCATGAGA 57.701 34.615 0.00 0.00 0.00 3.27
213 214 8.939201 AACTAGATCTTTGTGTATGTCATGAG 57.061 34.615 0.00 0.00 0.00 2.90
214 215 9.154847 CAAACTAGATCTTTGTGTATGTCATGA 57.845 33.333 0.00 0.00 0.00 3.07
215 216 9.154847 TCAAACTAGATCTTTGTGTATGTCATG 57.845 33.333 0.00 0.00 31.63 3.07
216 217 9.376075 CTCAAACTAGATCTTTGTGTATGTCAT 57.624 33.333 0.00 0.00 31.63 3.06
217 218 7.331934 GCTCAAACTAGATCTTTGTGTATGTCA 59.668 37.037 0.00 0.00 31.63 3.58
218 219 7.201565 GGCTCAAACTAGATCTTTGTGTATGTC 60.202 40.741 0.00 0.00 31.63 3.06
219 220 6.595716 GGCTCAAACTAGATCTTTGTGTATGT 59.404 38.462 0.00 0.00 31.63 2.29
220 221 6.595326 TGGCTCAAACTAGATCTTTGTGTATG 59.405 38.462 0.00 2.46 31.63 2.39
221 222 6.595716 GTGGCTCAAACTAGATCTTTGTGTAT 59.404 38.462 0.00 0.00 31.63 2.29
222 223 5.932303 GTGGCTCAAACTAGATCTTTGTGTA 59.068 40.000 0.00 0.00 31.63 2.90
223 224 4.757149 GTGGCTCAAACTAGATCTTTGTGT 59.243 41.667 0.00 0.00 31.63 3.72
224 225 4.756642 TGTGGCTCAAACTAGATCTTTGTG 59.243 41.667 0.00 1.95 31.63 3.33
225 226 4.757149 GTGTGGCTCAAACTAGATCTTTGT 59.243 41.667 0.00 0.00 31.63 2.83
226 227 4.154918 GGTGTGGCTCAAACTAGATCTTTG 59.845 45.833 0.00 0.00 0.00 2.77
227 228 4.202461 TGGTGTGGCTCAAACTAGATCTTT 60.202 41.667 0.00 0.00 0.00 2.52
228 229 3.327757 TGGTGTGGCTCAAACTAGATCTT 59.672 43.478 0.00 0.00 0.00 2.40
229 230 2.906389 TGGTGTGGCTCAAACTAGATCT 59.094 45.455 0.00 0.00 0.00 2.75
230 231 3.003480 GTGGTGTGGCTCAAACTAGATC 58.997 50.000 0.00 0.00 0.00 2.75
231 232 2.371841 TGTGGTGTGGCTCAAACTAGAT 59.628 45.455 0.00 0.00 0.00 1.98
232 233 1.765904 TGTGGTGTGGCTCAAACTAGA 59.234 47.619 0.00 0.00 0.00 2.43
233 234 2.146342 CTGTGGTGTGGCTCAAACTAG 58.854 52.381 0.00 0.00 0.00 2.57
234 235 1.765904 TCTGTGGTGTGGCTCAAACTA 59.234 47.619 0.00 0.00 0.00 2.24
235 236 0.546122 TCTGTGGTGTGGCTCAAACT 59.454 50.000 0.00 0.00 0.00 2.66
236 237 1.334869 CTTCTGTGGTGTGGCTCAAAC 59.665 52.381 0.00 0.00 0.00 2.93
237 238 1.679139 CTTCTGTGGTGTGGCTCAAA 58.321 50.000 0.00 0.00 0.00 2.69
238 239 0.179020 CCTTCTGTGGTGTGGCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
239 240 1.451504 CCTTCTGTGGTGTGGCTCA 59.548 57.895 0.00 0.00 0.00 4.26
240 241 1.302832 CCCTTCTGTGGTGTGGCTC 60.303 63.158 0.00 0.00 0.00 4.70
241 242 0.766674 TACCCTTCTGTGGTGTGGCT 60.767 55.000 0.00 0.00 36.57 4.75
242 243 0.328258 ATACCCTTCTGTGGTGTGGC 59.672 55.000 0.00 0.00 36.57 5.01
243 244 1.950484 GCATACCCTTCTGTGGTGTGG 60.950 57.143 8.04 0.00 43.10 4.17
244 245 1.271325 TGCATACCCTTCTGTGGTGTG 60.271 52.381 2.25 2.25 44.97 3.82
245 246 1.064003 TGCATACCCTTCTGTGGTGT 58.936 50.000 0.00 0.00 36.57 4.16
246 247 2.198827 TTGCATACCCTTCTGTGGTG 57.801 50.000 0.00 0.00 36.57 4.17
249 250 3.317711 TGTGTTTTGCATACCCTTCTGTG 59.682 43.478 0.00 0.00 0.00 3.66
264 265 3.469008 TGATCTGACTCGGTGTGTTTT 57.531 42.857 0.00 0.00 0.00 2.43
530 1312 7.759489 TCATATAATGGGTTTGAAGCATACC 57.241 36.000 0.00 0.00 35.29 2.73
543 1325 5.528690 CGCTCCCAATGTATCATATAATGGG 59.471 44.000 8.05 8.05 45.94 4.00
548 1330 3.445805 TCGCGCTCCCAATGTATCATATA 59.554 43.478 5.56 0.00 0.00 0.86
549 1331 2.233676 TCGCGCTCCCAATGTATCATAT 59.766 45.455 5.56 0.00 0.00 1.78
550 1332 1.616374 TCGCGCTCCCAATGTATCATA 59.384 47.619 5.56 0.00 0.00 2.15
562 1344 1.226686 AATCATGCATCTCGCGCTCC 61.227 55.000 5.56 0.00 46.97 4.70
732 1537 4.569966 AGTGCGAGCTGATTTAGAATTGAG 59.430 41.667 0.00 0.00 0.00 3.02
738 1543 2.223829 GGCTAGTGCGAGCTGATTTAGA 60.224 50.000 0.00 0.00 42.43 2.10
881 1687 9.110617 GCATTACAAATATTGTCTCATTCATCG 57.889 33.333 0.00 0.00 44.12 3.84
1066 1872 3.272439 TGCGAAAGTTGAAGCATGAAG 57.728 42.857 0.00 0.00 34.39 3.02
1111 1917 8.475331 ACAAAAACAGTACGGTTATATCAGAG 57.525 34.615 11.89 0.51 0.00 3.35
1162 1968 4.297510 GTGCATGCACAGTAACAATGAAA 58.702 39.130 39.12 2.34 45.53 2.69
1659 2485 9.784824 CGTCGTGAATTGATCTCTAATTTTATC 57.215 33.333 0.00 0.00 0.00 1.75
1665 2491 5.263968 ACCGTCGTGAATTGATCTCTAAT 57.736 39.130 0.00 0.00 0.00 1.73
1766 2592 5.467035 TTGATTTGGTTTGGAACTGGATC 57.533 39.130 0.00 0.00 0.00 3.36
1775 2601 5.852827 ACATGTACCTTTGATTTGGTTTGG 58.147 37.500 0.00 0.00 37.74 3.28
2226 3056 2.565834 TGCTAATCCGGGCTATAAGACC 59.434 50.000 0.00 0.00 41.17 3.85
2261 3091 1.192146 TCTTCAACCTCTGACCCCCG 61.192 60.000 0.00 0.00 32.21 5.73
2297 3127 1.381056 AGAGAGGCCTCGACATGCT 60.381 57.895 26.95 14.80 44.08 3.79
2324 3157 2.117137 CTCGTATCACGTACATGCACC 58.883 52.381 0.00 0.00 43.14 5.01
2373 3214 4.023963 GTGTTCAAAGTTAGCCAAGAGACC 60.024 45.833 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.