Multiple sequence alignment - TraesCS7B01G191300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G191300 chr7B 100.000 5510 0 0 1 5510 329029664 329035173 0.000000e+00 10176.0
1 TraesCS7B01G191300 chr7B 91.699 518 36 6 45 558 80859179 80859693 0.000000e+00 712.0
2 TraesCS7B01G191300 chr7B 93.750 128 8 0 5383 5510 694766240 694766113 5.630000e-45 193.0
3 TraesCS7B01G191300 chr7B 95.455 44 2 0 1 44 705643799 705643842 2.750000e-08 71.3
4 TraesCS7B01G191300 chr7A 92.685 3117 140 35 559 3629 198808537 198805463 0.000000e+00 4412.0
5 TraesCS7B01G191300 chr7A 94.885 1388 42 13 3638 5003 198805384 198804004 0.000000e+00 2143.0
6 TraesCS7B01G191300 chr7A 93.701 127 8 0 5378 5504 64623387 64623261 2.030000e-44 191.0
7 TraesCS7B01G191300 chr7A 97.917 48 1 0 5327 5374 198803717 198803670 3.540000e-12 84.2
8 TraesCS7B01G191300 chr7D 94.953 2358 74 16 2180 4514 186318243 186320578 0.000000e+00 3653.0
9 TraesCS7B01G191300 chr7D 88.235 1122 68 25 673 1781 186316699 186317769 0.000000e+00 1282.0
10 TraesCS7B01G191300 chr7D 92.471 518 35 3 45 559 413539906 413540422 0.000000e+00 737.0
11 TraesCS7B01G191300 chr7D 87.852 568 32 20 4517 5070 186320640 186321184 2.800000e-177 632.0
12 TraesCS7B01G191300 chr7D 89.610 154 9 4 5223 5374 186334046 186334194 7.290000e-44 189.0
13 TraesCS7B01G191300 chr7D 89.744 117 5 3 561 676 186316566 186316676 5.750000e-30 143.0
14 TraesCS7B01G191300 chr7D 91.176 102 5 2 5130 5227 186321366 186321467 9.630000e-28 135.0
15 TraesCS7B01G191300 chr3D 92.308 520 37 2 45 561 519386193 519385674 0.000000e+00 736.0
16 TraesCS7B01G191300 chr3D 97.727 44 1 0 1 44 253614824 253614781 5.920000e-10 76.8
17 TraesCS7B01G191300 chr3D 95.455 44 2 0 1 44 584170916 584170873 2.750000e-08 71.3
18 TraesCS7B01G191300 chr1D 92.070 517 38 2 45 558 495002051 495001535 0.000000e+00 725.0
19 TraesCS7B01G191300 chr6A 91.603 524 40 3 45 564 245780608 245781131 0.000000e+00 721.0
20 TraesCS7B01G191300 chr2D 91.876 517 38 3 45 558 55623855 55623340 0.000000e+00 719.0
21 TraesCS7B01G191300 chr2B 91.313 518 38 6 45 558 741756764 741757278 0.000000e+00 701.0
22 TraesCS7B01G191300 chr2B 91.313 518 38 6 45 558 741765772 741766286 0.000000e+00 701.0
23 TraesCS7B01G191300 chr2B 95.122 123 6 0 5388 5510 764504473 764504351 1.570000e-45 195.0
24 TraesCS7B01G191300 chr2B 87.500 112 11 3 5388 5497 154247365 154247475 5.790000e-25 126.0
25 TraesCS7B01G191300 chr2A 90.347 518 43 6 45 558 527618274 527618788 0.000000e+00 673.0
26 TraesCS7B01G191300 chr3B 90.226 133 11 2 5374 5504 674454698 674454830 7.340000e-39 172.0
27 TraesCS7B01G191300 chr3B 84.821 112 14 3 5388 5497 424132296 424132186 5.840000e-20 110.0
28 TraesCS7B01G191300 chr3B 85.586 111 9 7 5388 5495 508208806 508208700 5.840000e-20 110.0
29 TraesCS7B01G191300 chr3B 95.455 44 2 0 1 44 678860269 678860312 2.750000e-08 71.3
30 TraesCS7B01G191300 chr3B 97.436 39 1 0 6 44 724320611 724320573 3.560000e-07 67.6
31 TraesCS7B01G191300 chr5A 96.429 84 2 1 5388 5470 381701385 381701302 2.680000e-28 137.0
32 TraesCS7B01G191300 chr5B 85.156 128 15 4 5247 5372 371914919 371914794 1.610000e-25 128.0
33 TraesCS7B01G191300 chr5D 85.455 110 12 4 5388 5495 179916001 179915894 1.620000e-20 111.0
34 TraesCS7B01G191300 chr6B 100.000 44 0 0 1 44 6507742 6507699 1.270000e-11 82.4
35 TraesCS7B01G191300 chr6B 95.556 45 2 0 1 45 65719431 65719387 7.660000e-09 73.1
36 TraesCS7B01G191300 chr4A 95.455 44 2 0 1 44 35269320 35269363 2.750000e-08 71.3
37 TraesCS7B01G191300 chr4B 93.182 44 3 0 1 44 33965525 33965568 1.280000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G191300 chr7B 329029664 329035173 5509 False 10176.000000 10176 100.000000 1 5510 1 chr7B.!!$F2 5509
1 TraesCS7B01G191300 chr7B 80859179 80859693 514 False 712.000000 712 91.699000 45 558 1 chr7B.!!$F1 513
2 TraesCS7B01G191300 chr7A 198803670 198808537 4867 True 2213.066667 4412 95.162333 559 5374 3 chr7A.!!$R2 4815
3 TraesCS7B01G191300 chr7D 186316566 186321467 4901 False 1169.000000 3653 90.392000 561 5227 5 chr7D.!!$F3 4666
4 TraesCS7B01G191300 chr7D 413539906 413540422 516 False 737.000000 737 92.471000 45 559 1 chr7D.!!$F2 514
5 TraesCS7B01G191300 chr3D 519385674 519386193 519 True 736.000000 736 92.308000 45 561 1 chr3D.!!$R2 516
6 TraesCS7B01G191300 chr1D 495001535 495002051 516 True 725.000000 725 92.070000 45 558 1 chr1D.!!$R1 513
7 TraesCS7B01G191300 chr6A 245780608 245781131 523 False 721.000000 721 91.603000 45 564 1 chr6A.!!$F1 519
8 TraesCS7B01G191300 chr2D 55623340 55623855 515 True 719.000000 719 91.876000 45 558 1 chr2D.!!$R1 513
9 TraesCS7B01G191300 chr2B 741756764 741757278 514 False 701.000000 701 91.313000 45 558 1 chr2B.!!$F2 513
10 TraesCS7B01G191300 chr2B 741765772 741766286 514 False 701.000000 701 91.313000 45 558 1 chr2B.!!$F3 513
11 TraesCS7B01G191300 chr2A 527618274 527618788 514 False 673.000000 673 90.347000 45 558 1 chr2A.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 959 0.095245 GCGCGTACGTACAGACTACA 59.905 55.0 24.50 0.00 42.83 2.74 F
1201 1255 0.175760 CGACGTCTCATCCCCAACAT 59.824 55.0 14.70 0.00 0.00 2.71 F
1511 1572 0.179045 ACTGAGTGCTGTGTGGAACC 60.179 55.0 0.00 0.00 34.36 3.62 F
2190 2360 0.182537 AGCTGTGCTGTTGGTAACCA 59.817 50.0 0.00 0.00 37.57 3.67 F
3158 3346 0.182299 TGTCCACAATGCACCTGACA 59.818 50.0 4.68 3.85 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 2294 0.035439 ACCCCGGATCACATTGTCAC 60.035 55.000 0.73 0.0 0.00 3.67 R
2711 2885 0.171903 CCGCCCTGCTTTTGATCTTG 59.828 55.000 0.00 0.0 0.00 3.02 R
2975 3162 1.276421 ACAGAAGATGGACGGAACCAG 59.724 52.381 0.00 0.0 43.49 4.00 R
4182 4445 1.468520 GCTTCAATGTGCCGTGTATGT 59.531 47.619 0.00 0.0 0.00 2.29 R
5089 5442 0.475044 AAACCCACGTTGCCCTAAGA 59.525 50.000 0.00 0.0 30.72 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.949257 GATCGGGCCAAATTAGCGG 59.051 57.895 4.39 0.00 0.00 5.52
23 24 4.174129 GCCAAATTAGCGGCGCGT 62.174 61.111 27.59 17.12 38.82 6.01
24 25 2.022762 CCAAATTAGCGGCGCGTC 59.977 61.111 27.59 3.30 0.00 5.19
25 26 2.022762 CAAATTAGCGGCGCGTCC 59.977 61.111 27.59 7.39 0.00 4.79
39 40 4.131088 GTCCGAGGTCGTGCCCTC 62.131 72.222 8.03 8.03 46.37 4.30
56 57 3.507233 GCCCTCATCATTTGTTGAACTGA 59.493 43.478 0.00 0.00 38.03 3.41
88 90 5.484290 TGAACAAACCAAGGGAAAGGTAAAA 59.516 36.000 0.00 0.00 37.07 1.52
111 113 8.801882 AAAATAATACCGTCCAGAAAGATTGA 57.198 30.769 0.00 0.00 0.00 2.57
177 179 4.593864 GAGGAGATCGGCGGCACC 62.594 72.222 10.53 8.05 0.00 5.01
193 195 0.533755 CACCCGATGCCAAGGAGATC 60.534 60.000 0.00 0.00 0.00 2.75
418 420 5.350504 TCAGGTGCCAGAAAATTGAAAAA 57.649 34.783 0.00 0.00 0.00 1.94
461 465 3.070015 GGGGAAATGGCATGGTAATCAAG 59.930 47.826 0.00 0.00 0.00 3.02
495 499 2.514803 AGGTGGCATTTTTACGAAGCT 58.485 42.857 0.00 0.00 0.00 3.74
499 503 5.883673 AGGTGGCATTTTTACGAAGCTAATA 59.116 36.000 0.00 0.00 0.00 0.98
517 521 7.338710 AGCTAATATTGAGAGTGGCAGTTTTA 58.661 34.615 0.00 0.00 0.00 1.52
633 637 3.218453 TGTTTAATCCCACCACACACAG 58.782 45.455 0.00 0.00 0.00 3.66
638 642 2.516227 TCCCACCACACACAGAAAAA 57.484 45.000 0.00 0.00 0.00 1.94
842 879 4.969196 ACACTCACAGCCGCACCG 62.969 66.667 0.00 0.00 0.00 4.94
912 955 2.096406 TCGCGCGTACGTACAGAC 59.904 61.111 30.98 12.49 42.83 3.51
913 956 2.097160 CGCGCGTACGTACAGACT 59.903 61.111 24.19 0.00 42.83 3.24
914 957 1.075979 TCGCGCGTACGTACAGACTA 61.076 55.000 30.98 1.54 42.83 2.59
915 958 0.916762 CGCGCGTACGTACAGACTAC 60.917 60.000 24.19 7.20 42.83 2.73
916 959 0.095245 GCGCGTACGTACAGACTACA 59.905 55.000 24.50 0.00 42.83 2.74
917 960 1.849737 GCGCGTACGTACAGACTACAG 60.850 57.143 24.50 7.48 42.83 2.74
918 961 1.655597 CGCGTACGTACAGACTACAGA 59.344 52.381 24.50 0.00 33.53 3.41
941 988 2.970639 CGAAGAAGAGGGCGGACA 59.029 61.111 0.00 0.00 0.00 4.02
1077 1126 2.282180 GGCACCGTGGTGTCCATT 60.282 61.111 19.56 0.00 44.18 3.16
1201 1255 0.175760 CGACGTCTCATCCCCAACAT 59.824 55.000 14.70 0.00 0.00 2.71
1205 1259 2.168521 ACGTCTCATCCCCAACATACAG 59.831 50.000 0.00 0.00 0.00 2.74
1206 1260 2.430694 CGTCTCATCCCCAACATACAGA 59.569 50.000 0.00 0.00 0.00 3.41
1207 1261 3.070159 CGTCTCATCCCCAACATACAGAT 59.930 47.826 0.00 0.00 0.00 2.90
1208 1262 4.384056 GTCTCATCCCCAACATACAGATG 58.616 47.826 0.00 0.00 39.16 2.90
1223 1277 4.038271 ACAGATGCATTTCAGGGAAGAA 57.962 40.909 0.00 0.00 0.00 2.52
1224 1278 4.607239 ACAGATGCATTTCAGGGAAGAAT 58.393 39.130 0.00 0.00 0.00 2.40
1273 1327 5.237996 TGATTTCTCTCTGCTTCTGTGTTTG 59.762 40.000 0.00 0.00 0.00 2.93
1319 1373 3.597255 TCTCATCTTTCTGCTGAGCAAG 58.403 45.455 9.07 3.08 38.44 4.01
1349 1403 0.179100 CGCACATCCTGAGGTTCGAT 60.179 55.000 0.00 0.00 34.01 3.59
1397 1451 1.209128 CGCCGATAATCTTCAACGCT 58.791 50.000 0.00 0.00 0.00 5.07
1405 1465 0.739813 ATCTTCAACGCTGGGTACGC 60.740 55.000 2.35 2.35 0.00 4.42
1411 1471 1.790623 CAACGCTGGGTACGCATATAC 59.209 52.381 13.58 3.08 0.00 1.47
1430 1490 7.201821 GCATATACCTTCACCAGCTTTGTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
1436 1496 3.255642 TCACCAGCTTTGTTAATTCTGCC 59.744 43.478 0.00 0.00 0.00 4.85
1447 1507 5.765510 TGTTAATTCTGCCCTGTATTGGAT 58.234 37.500 0.00 0.00 0.00 3.41
1448 1508 6.194235 TGTTAATTCTGCCCTGTATTGGATT 58.806 36.000 0.00 0.00 0.00 3.01
1449 1509 6.667414 TGTTAATTCTGCCCTGTATTGGATTT 59.333 34.615 0.00 0.00 0.00 2.17
1450 1510 7.180051 TGTTAATTCTGCCCTGTATTGGATTTT 59.820 33.333 0.00 0.00 0.00 1.82
1451 1511 5.603170 ATTCTGCCCTGTATTGGATTTTG 57.397 39.130 0.00 0.00 0.00 2.44
1452 1512 3.364549 TCTGCCCTGTATTGGATTTTGG 58.635 45.455 0.00 0.00 0.00 3.28
1453 1513 3.011144 TCTGCCCTGTATTGGATTTTGGA 59.989 43.478 0.00 0.00 0.00 3.53
1454 1514 3.364549 TGCCCTGTATTGGATTTTGGAG 58.635 45.455 0.00 0.00 0.00 3.86
1455 1515 2.695147 GCCCTGTATTGGATTTTGGAGG 59.305 50.000 0.00 0.00 0.00 4.30
1456 1516 3.881713 GCCCTGTATTGGATTTTGGAGGT 60.882 47.826 0.00 0.00 0.00 3.85
1457 1517 4.630184 GCCCTGTATTGGATTTTGGAGGTA 60.630 45.833 0.00 0.00 0.00 3.08
1458 1518 4.887655 CCCTGTATTGGATTTTGGAGGTAC 59.112 45.833 0.00 0.00 0.00 3.34
1468 1528 7.747690 TGGATTTTGGAGGTACTGTACTAAAA 58.252 34.615 16.79 16.73 41.55 1.52
1499 1560 6.374894 ACCAGCTAGTAGTACTTTACTGAGTG 59.625 42.308 20.23 11.26 39.81 3.51
1500 1561 6.259638 CAGCTAGTAGTACTTTACTGAGTGC 58.740 44.000 8.40 4.16 39.81 4.40
1506 1567 4.621991 AGTACTTTACTGAGTGCTGTGTG 58.378 43.478 0.00 0.00 40.43 3.82
1507 1568 2.838736 ACTTTACTGAGTGCTGTGTGG 58.161 47.619 0.00 0.00 0.00 4.17
1511 1572 0.179045 ACTGAGTGCTGTGTGGAACC 60.179 55.000 0.00 0.00 34.36 3.62
1592 1653 0.336048 ACCATCATGTCCTTTGGGGG 59.664 55.000 0.00 0.00 33.39 5.40
1837 2000 3.283259 AAAGGGCAGTTCCATACTAGC 57.717 47.619 0.00 0.00 34.56 3.42
1840 2003 1.344763 GGGCAGTTCCATACTAGCGAT 59.655 52.381 0.00 0.00 34.56 4.58
1846 2009 3.053455 GTTCCATACTAGCGATGTCTGC 58.947 50.000 4.90 0.00 0.00 4.26
1847 2010 2.306847 TCCATACTAGCGATGTCTGCA 58.693 47.619 4.90 0.00 33.85 4.41
1967 2137 4.555348 TCGCGTGGAACAAACTTTTATT 57.445 36.364 5.77 0.00 44.16 1.40
1968 2138 4.922719 TCGCGTGGAACAAACTTTTATTT 58.077 34.783 5.77 0.00 44.16 1.40
1969 2139 6.057627 TCGCGTGGAACAAACTTTTATTTA 57.942 33.333 5.77 0.00 44.16 1.40
1974 2144 8.597227 GCGTGGAACAAACTTTTATTTAGTTTT 58.403 29.630 0.00 0.00 44.16 2.43
1997 2167 3.088532 TCCTTGTTTCGGAATTGGGATG 58.911 45.455 0.00 0.00 0.00 3.51
2000 2170 4.160252 CCTTGTTTCGGAATTGGGATGATT 59.840 41.667 0.00 0.00 0.00 2.57
2004 2174 6.626302 TGTTTCGGAATTGGGATGATTAAAC 58.374 36.000 0.00 0.00 0.00 2.01
2060 2230 3.034030 GCACCAAGCAGCGAAAGT 58.966 55.556 0.00 0.00 44.79 2.66
2080 2250 2.588027 TTGGGTTTTGTCTTTTCGCC 57.412 45.000 0.00 0.00 0.00 5.54
2114 2284 2.099141 TCGTTGGATGCTTGGAGAAG 57.901 50.000 0.00 0.00 0.00 2.85
2124 2294 1.396301 GCTTGGAGAAGTTGCATCGAG 59.604 52.381 0.00 0.00 0.00 4.04
2139 2309 2.278026 TCGAGTGACAATGTGATCCG 57.722 50.000 0.00 0.00 0.00 4.18
2164 2334 4.065088 GTCTCTTATGGATTGCGGCAATA 58.935 43.478 26.71 13.90 33.90 1.90
2168 2338 5.069318 TCTTATGGATTGCGGCAATATTCA 58.931 37.500 26.71 22.86 33.90 2.57
2170 2340 2.373224 TGGATTGCGGCAATATTCACA 58.627 42.857 26.71 17.14 33.90 3.58
2186 2356 1.308047 CACAAGCTGTGCTGTTGGTA 58.692 50.000 3.83 0.00 41.89 3.25
2187 2357 1.675483 CACAAGCTGTGCTGTTGGTAA 59.325 47.619 3.83 0.00 41.89 2.85
2188 2358 1.676006 ACAAGCTGTGCTGTTGGTAAC 59.324 47.619 0.00 0.00 39.62 2.50
2189 2359 1.001378 CAAGCTGTGCTGTTGGTAACC 60.001 52.381 0.00 0.00 39.62 2.85
2190 2360 0.182537 AGCTGTGCTGTTGGTAACCA 59.817 50.000 0.00 0.00 37.57 3.67
2191 2361 1.202927 AGCTGTGCTGTTGGTAACCAT 60.203 47.619 0.00 0.00 37.57 3.55
2251 2425 4.156477 TGGTAACCATTTTTCAAGGGAGG 58.844 43.478 0.00 0.00 35.72 4.30
2321 2495 6.839134 TCTTGATATCAGGTTTCTACTGGCTA 59.161 38.462 13.92 0.00 36.62 3.93
2374 2548 3.555168 GCGGTGGATTATCTAGGTCCTTG 60.555 52.174 0.00 0.00 33.15 3.61
2438 2612 7.154656 GCTTCAAATTAATCAGTTTGGGTCTT 58.845 34.615 0.00 0.00 36.30 3.01
2495 2669 1.666023 CGACAGATACTGTGTGCACGT 60.666 52.381 13.13 6.73 45.44 4.49
2510 2684 3.353836 CGTTGCAGGTCCGTTGGG 61.354 66.667 0.00 0.00 0.00 4.12
2525 2699 3.818773 CCGTTGGGTGTTCAAGTTCTATT 59.181 43.478 0.00 0.00 0.00 1.73
2526 2700 4.083484 CCGTTGGGTGTTCAAGTTCTATTC 60.083 45.833 0.00 0.00 0.00 1.75
2724 2898 5.508567 TGGATATCACCAAGATCAAAAGCA 58.491 37.500 4.83 0.00 38.19 3.91
2875 3062 4.690280 CCATGGCACCAATTTAGTTTTCAC 59.310 41.667 0.00 0.00 0.00 3.18
2889 3076 5.476091 AGTTTTCACACTTTTGTTTCCCA 57.524 34.783 0.00 0.00 31.66 4.37
2975 3162 6.451393 AGTAGCAGAATACTAGCACATTAGC 58.549 40.000 0.00 0.00 34.21 3.09
2995 3183 1.276421 CTGGTTCCGTCCATCTTCTGT 59.724 52.381 0.00 0.00 36.84 3.41
3009 3197 8.341173 GTCCATCTTCTGTGCTTTTATATTCTG 58.659 37.037 0.00 0.00 0.00 3.02
3156 3344 1.608055 CTTGTCCACAATGCACCTGA 58.392 50.000 4.68 0.00 35.02 3.86
3157 3345 1.267806 CTTGTCCACAATGCACCTGAC 59.732 52.381 4.68 1.38 35.02 3.51
3158 3346 0.182299 TGTCCACAATGCACCTGACA 59.818 50.000 4.68 3.85 0.00 3.58
3159 3347 0.593128 GTCCACAATGCACCTGACAC 59.407 55.000 4.68 0.00 0.00 3.67
3160 3348 0.537143 TCCACAATGCACCTGACACC 60.537 55.000 4.68 0.00 0.00 4.16
3161 3349 0.538057 CCACAATGCACCTGACACCT 60.538 55.000 4.68 0.00 0.00 4.00
3162 3350 0.594602 CACAATGCACCTGACACCTG 59.405 55.000 4.68 0.00 0.00 4.00
3332 3520 9.953565 TGTATTACTAAATTATCTGTATGGCCC 57.046 33.333 0.00 0.00 0.00 5.80
3398 3588 5.731599 TTTTGATGGAAAACATGTGTTGC 57.268 34.783 13.05 13.05 40.72 4.17
3446 3636 0.726827 ACAGGCACATATTTGCGACG 59.273 50.000 7.72 1.72 44.00 5.12
3857 4117 6.154363 CCAATGCTTATTCCCTGGTAGAAAAA 59.846 38.462 0.00 0.00 0.00 1.94
3982 4243 1.109920 ACGTCCTCTCATCATCCGGG 61.110 60.000 0.00 0.00 0.00 5.73
4182 4445 3.793797 TGATGTTCTATCGGCGAAAGA 57.206 42.857 15.93 2.32 0.00 2.52
4183 4446 3.444916 TGATGTTCTATCGGCGAAAGAC 58.555 45.455 15.93 11.16 0.00 3.01
4197 4460 2.415168 CGAAAGACATACACGGCACATT 59.585 45.455 0.00 0.00 0.00 2.71
4219 4482 6.915544 TTGAAGCTGATACATTCTGATCAC 57.084 37.500 0.00 0.00 0.00 3.06
4554 4876 2.024414 GAGGTGGAATAATTGGCGCTT 58.976 47.619 7.64 0.00 0.00 4.68
4607 4932 7.334749 CGACGGTAATTCAGTGTAACAATATG 58.665 38.462 0.00 0.00 41.43 1.78
4639 4964 9.623000 ATTTTGTGTCTTTGGTTAGTTACTACT 57.377 29.630 0.00 0.00 38.44 2.57
4640 4965 8.652810 TTTGTGTCTTTGGTTAGTTACTACTC 57.347 34.615 0.00 0.00 35.78 2.59
4642 4967 6.552350 TGTGTCTTTGGTTAGTTACTACTCCT 59.448 38.462 11.87 0.00 35.78 3.69
4643 4968 7.070322 TGTGTCTTTGGTTAGTTACTACTCCTT 59.930 37.037 11.87 0.00 35.78 3.36
4644 4969 8.579863 GTGTCTTTGGTTAGTTACTACTCCTTA 58.420 37.037 11.87 1.62 35.78 2.69
4645 4970 8.579863 TGTCTTTGGTTAGTTACTACTCCTTAC 58.420 37.037 11.87 0.00 35.78 2.34
4649 4974 9.813826 TTTGGTTAGTTACTACTCCTTACTACT 57.186 33.333 11.87 0.00 35.78 2.57
4680 5013 9.386010 AGTGTAAAGTTTGTAACATGAACAGTA 57.614 29.630 0.00 0.00 0.00 2.74
4692 5025 7.609760 AACATGAACAGTATCGAGCAAATTA 57.390 32.000 0.00 0.00 0.00 1.40
4813 5156 0.179067 TTGTCGGACAAACGGCTCTT 60.179 50.000 20.52 0.00 39.61 2.85
4820 5163 1.194772 GACAAACGGCTCTTGTACAGC 59.805 52.381 0.00 0.00 37.14 4.40
5023 5375 2.224402 GGCATCTAGCTAGGGTTTGGAG 60.224 54.545 20.58 3.68 44.79 3.86
5032 5384 0.774491 AGGGTTTGGAGCAAGGGGTA 60.774 55.000 0.00 0.00 0.00 3.69
5070 5423 0.687354 GGCTGTTCTGAGTGGGAGAA 59.313 55.000 0.00 0.00 0.00 2.87
5074 5427 3.658709 CTGTTCTGAGTGGGAGAAGTTC 58.341 50.000 0.00 0.00 30.01 3.01
5106 5592 0.475044 TTTCTTAGGGCAACGTGGGT 59.525 50.000 0.00 0.00 35.44 4.51
5133 5619 8.528044 TTTTATTGACAAAGTGGTAGGAAAGT 57.472 30.769 0.00 0.00 0.00 2.66
5134 5620 7.504924 TTATTGACAAAGTGGTAGGAAAGTG 57.495 36.000 0.00 0.00 0.00 3.16
5135 5621 3.815809 TGACAAAGTGGTAGGAAAGTGG 58.184 45.455 0.00 0.00 0.00 4.00
5136 5622 3.201266 TGACAAAGTGGTAGGAAAGTGGT 59.799 43.478 0.00 0.00 0.00 4.16
5137 5623 4.409574 TGACAAAGTGGTAGGAAAGTGGTA 59.590 41.667 0.00 0.00 0.00 3.25
5138 5624 4.969484 ACAAAGTGGTAGGAAAGTGGTAG 58.031 43.478 0.00 0.00 0.00 3.18
5139 5625 4.202430 ACAAAGTGGTAGGAAAGTGGTAGG 60.202 45.833 0.00 0.00 0.00 3.18
5140 5626 3.555117 AGTGGTAGGAAAGTGGTAGGA 57.445 47.619 0.00 0.00 0.00 2.94
5206 5696 6.092748 CACCAATAAGCACAAATACAAGTCC 58.907 40.000 0.00 0.00 0.00 3.85
5227 5717 4.764823 TCCAACATACCACAAAAGCTAAGG 59.235 41.667 0.00 0.00 0.00 2.69
5228 5718 4.764823 CCAACATACCACAAAAGCTAAGGA 59.235 41.667 0.00 0.00 0.00 3.36
5229 5719 5.335661 CCAACATACCACAAAAGCTAAGGAC 60.336 44.000 0.00 0.00 0.00 3.85
5230 5720 4.980573 ACATACCACAAAAGCTAAGGACA 58.019 39.130 0.00 0.00 0.00 4.02
5231 5721 5.570320 ACATACCACAAAAGCTAAGGACAT 58.430 37.500 0.00 0.00 0.00 3.06
5232 5722 5.415701 ACATACCACAAAAGCTAAGGACATG 59.584 40.000 0.00 0.00 0.00 3.21
5233 5723 3.832527 ACCACAAAAGCTAAGGACATGT 58.167 40.909 0.00 0.00 0.00 3.21
5234 5724 4.215109 ACCACAAAAGCTAAGGACATGTT 58.785 39.130 0.00 0.00 0.00 2.71
5235 5725 4.278419 ACCACAAAAGCTAAGGACATGTTC 59.722 41.667 0.00 0.00 0.00 3.18
5236 5726 4.520492 CCACAAAAGCTAAGGACATGTTCT 59.480 41.667 0.00 0.00 0.00 3.01
5237 5727 5.335191 CCACAAAAGCTAAGGACATGTTCTC 60.335 44.000 7.23 0.00 0.00 2.87
5238 5728 4.762251 ACAAAAGCTAAGGACATGTTCTCC 59.238 41.667 7.23 0.00 0.00 3.71
5241 5731 4.640771 AGCTAAGGACATGTTCTCCAAA 57.359 40.909 7.23 0.00 0.00 3.28
5242 5732 4.985538 AGCTAAGGACATGTTCTCCAAAA 58.014 39.130 7.23 0.00 0.00 2.44
5243 5733 5.385198 AGCTAAGGACATGTTCTCCAAAAA 58.615 37.500 7.23 0.00 0.00 1.94
5266 5756 5.930837 AAGACCAAATCAGTTCAAAACCA 57.069 34.783 0.00 0.00 0.00 3.67
5267 5757 5.930837 AGACCAAATCAGTTCAAAACCAA 57.069 34.783 0.00 0.00 0.00 3.67
5268 5758 6.293004 AGACCAAATCAGTTCAAAACCAAA 57.707 33.333 0.00 0.00 0.00 3.28
5271 5761 8.482128 AGACCAAATCAGTTCAAAACCAAATAA 58.518 29.630 0.00 0.00 0.00 1.40
5272 5762 9.271828 GACCAAATCAGTTCAAAACCAAATAAT 57.728 29.630 0.00 0.00 0.00 1.28
5273 5763 9.625747 ACCAAATCAGTTCAAAACCAAATAATT 57.374 25.926 0.00 0.00 0.00 1.40
5305 5795 4.550076 AAGACAGAAGCACTTCATAGCT 57.450 40.909 12.65 0.00 44.31 3.32
5317 5807 7.386851 AGCACTTCATAGCTTTACTTACTTCA 58.613 34.615 0.00 0.00 38.01 3.02
5318 5808 8.043710 AGCACTTCATAGCTTTACTTACTTCAT 58.956 33.333 0.00 0.00 38.01 2.57
5319 5809 9.314321 GCACTTCATAGCTTTACTTACTTCATA 57.686 33.333 0.00 0.00 0.00 2.15
5370 5862 8.355169 AGTTGAAGACTCGTTACAACTTACATA 58.645 33.333 0.00 0.00 45.37 2.29
5396 5888 8.710749 ATATAACTTATGCCATGTTTGGATGT 57.289 30.769 0.00 0.00 46.92 3.06
5397 5889 4.989279 ACTTATGCCATGTTTGGATGTC 57.011 40.909 0.00 0.00 46.92 3.06
5398 5890 4.603131 ACTTATGCCATGTTTGGATGTCT 58.397 39.130 0.00 0.00 46.92 3.41
5399 5891 4.400251 ACTTATGCCATGTTTGGATGTCTG 59.600 41.667 0.00 0.00 46.92 3.51
5400 5892 2.291209 TGCCATGTTTGGATGTCTGT 57.709 45.000 0.00 0.00 46.92 3.41
5401 5893 3.431673 TGCCATGTTTGGATGTCTGTA 57.568 42.857 0.00 0.00 46.92 2.74
5402 5894 3.966979 TGCCATGTTTGGATGTCTGTAT 58.033 40.909 0.00 0.00 46.92 2.29
5403 5895 4.343231 TGCCATGTTTGGATGTCTGTATT 58.657 39.130 0.00 0.00 46.92 1.89
5404 5896 4.158209 TGCCATGTTTGGATGTCTGTATTG 59.842 41.667 0.00 0.00 46.92 1.90
5405 5897 4.398988 GCCATGTTTGGATGTCTGTATTGA 59.601 41.667 0.00 0.00 46.92 2.57
5406 5898 5.449588 GCCATGTTTGGATGTCTGTATTGAG 60.450 44.000 0.00 0.00 46.92 3.02
5407 5899 5.449588 CCATGTTTGGATGTCTGTATTGAGC 60.450 44.000 0.00 0.00 46.92 4.26
5408 5900 4.009675 TGTTTGGATGTCTGTATTGAGCC 58.990 43.478 0.00 0.00 0.00 4.70
5409 5901 4.263462 TGTTTGGATGTCTGTATTGAGCCT 60.263 41.667 0.00 0.00 0.00 4.58
5410 5902 3.827008 TGGATGTCTGTATTGAGCCTC 57.173 47.619 0.00 0.00 0.00 4.70
5411 5903 2.435805 TGGATGTCTGTATTGAGCCTCC 59.564 50.000 0.00 0.00 0.00 4.30
5412 5904 2.546795 GGATGTCTGTATTGAGCCTCCG 60.547 54.545 0.00 0.00 0.00 4.63
5413 5905 1.847328 TGTCTGTATTGAGCCTCCGA 58.153 50.000 0.00 0.00 0.00 4.55
5414 5906 2.176045 TGTCTGTATTGAGCCTCCGAA 58.824 47.619 0.00 0.00 0.00 4.30
5415 5907 2.766263 TGTCTGTATTGAGCCTCCGAAT 59.234 45.455 0.00 0.00 0.00 3.34
5416 5908 3.197766 TGTCTGTATTGAGCCTCCGAATT 59.802 43.478 0.00 0.00 0.00 2.17
5417 5909 3.557595 GTCTGTATTGAGCCTCCGAATTG 59.442 47.826 0.00 0.00 0.00 2.32
5418 5910 2.874701 CTGTATTGAGCCTCCGAATTGG 59.125 50.000 0.00 0.00 40.09 3.16
5430 5922 4.545823 TCCGAATTGGATTTCGTATTGC 57.454 40.909 5.94 0.00 45.34 3.56
5431 5923 3.314080 TCCGAATTGGATTTCGTATTGCC 59.686 43.478 5.94 0.00 45.34 4.52
5432 5924 3.315191 CCGAATTGGATTTCGTATTGCCT 59.685 43.478 5.94 0.00 45.34 4.75
5433 5925 4.282068 CGAATTGGATTTCGTATTGCCTG 58.718 43.478 0.00 0.00 42.63 4.85
5434 5926 4.610945 GAATTGGATTTCGTATTGCCTGG 58.389 43.478 0.00 0.00 0.00 4.45
5435 5927 1.388547 TGGATTTCGTATTGCCTGGC 58.611 50.000 12.87 12.87 0.00 4.85
5436 5928 1.064758 TGGATTTCGTATTGCCTGGCT 60.065 47.619 21.03 2.51 0.00 4.75
5437 5929 1.334869 GGATTTCGTATTGCCTGGCTG 59.665 52.381 21.03 4.78 0.00 4.85
5438 5930 0.740737 ATTTCGTATTGCCTGGCTGC 59.259 50.000 21.03 2.90 0.00 5.25
5439 5931 1.312371 TTTCGTATTGCCTGGCTGCC 61.312 55.000 21.03 12.87 0.00 4.85
5440 5932 2.438254 CGTATTGCCTGGCTGCCA 60.438 61.111 21.96 21.96 0.00 4.92
5441 5933 2.045708 CGTATTGCCTGGCTGCCAA 61.046 57.895 23.51 8.16 30.80 4.52
5442 5934 1.386525 CGTATTGCCTGGCTGCCAAT 61.387 55.000 23.51 15.28 30.80 3.16
5443 5935 0.826062 GTATTGCCTGGCTGCCAATT 59.174 50.000 23.51 7.12 30.80 2.32
5444 5936 1.113788 TATTGCCTGGCTGCCAATTC 58.886 50.000 23.51 14.24 30.80 2.17
5445 5937 0.905809 ATTGCCTGGCTGCCAATTCA 60.906 50.000 23.51 16.61 30.80 2.57
5446 5938 1.537814 TTGCCTGGCTGCCAATTCAG 61.538 55.000 23.51 10.35 37.15 3.02
5454 5946 2.074547 CTGCCAATTCAGCTGTTTGG 57.925 50.000 30.47 30.47 42.28 3.28
5455 5947 1.614903 CTGCCAATTCAGCTGTTTGGA 59.385 47.619 34.98 24.55 42.02 3.53
5456 5948 2.232941 CTGCCAATTCAGCTGTTTGGAT 59.767 45.455 34.98 15.37 42.02 3.41
5457 5949 2.028839 TGCCAATTCAGCTGTTTGGATG 60.029 45.455 34.98 20.07 42.02 3.51
5458 5950 2.613691 CCAATTCAGCTGTTTGGATGC 58.386 47.619 30.82 0.00 42.02 3.91
5459 5951 2.256174 CAATTCAGCTGTTTGGATGCG 58.744 47.619 14.67 0.00 0.00 4.73
5460 5952 0.171903 ATTCAGCTGTTTGGATGCGC 59.828 50.000 14.67 0.00 0.00 6.09
5461 5953 1.171549 TTCAGCTGTTTGGATGCGCA 61.172 50.000 14.96 14.96 0.00 6.09
5462 5954 1.443194 CAGCTGTTTGGATGCGCAC 60.443 57.895 14.90 6.86 0.00 5.34
5463 5955 1.601759 AGCTGTTTGGATGCGCACT 60.602 52.632 14.90 1.12 0.00 4.40
5464 5956 1.443194 GCTGTTTGGATGCGCACTG 60.443 57.895 14.90 3.85 0.00 3.66
5465 5957 1.855213 GCTGTTTGGATGCGCACTGA 61.855 55.000 14.90 0.00 0.00 3.41
5466 5958 0.592637 CTGTTTGGATGCGCACTGAA 59.407 50.000 14.90 1.75 0.00 3.02
5467 5959 1.001487 CTGTTTGGATGCGCACTGAAA 60.001 47.619 14.90 8.97 0.00 2.69
5468 5960 1.268999 TGTTTGGATGCGCACTGAAAC 60.269 47.619 23.26 23.26 0.00 2.78
5469 5961 0.040514 TTTGGATGCGCACTGAAACG 60.041 50.000 14.90 0.00 0.00 3.60
5475 5967 2.551270 CGCACTGAAACGCCAGAC 59.449 61.111 7.01 0.00 37.59 3.51
5476 5968 1.956170 CGCACTGAAACGCCAGACT 60.956 57.895 7.01 0.00 37.59 3.24
5477 5969 1.571460 GCACTGAAACGCCAGACTG 59.429 57.895 7.01 0.00 37.59 3.51
5478 5970 0.880278 GCACTGAAACGCCAGACTGA 60.880 55.000 3.32 0.00 37.59 3.41
5479 5971 1.581934 CACTGAAACGCCAGACTGAA 58.418 50.000 3.32 0.00 37.59 3.02
5480 5972 1.939934 CACTGAAACGCCAGACTGAAA 59.060 47.619 3.32 0.00 37.59 2.69
5481 5973 2.549754 CACTGAAACGCCAGACTGAAAT 59.450 45.455 3.32 0.00 37.59 2.17
5482 5974 2.549754 ACTGAAACGCCAGACTGAAATG 59.450 45.455 3.32 0.00 37.59 2.32
5483 5975 2.807967 CTGAAACGCCAGACTGAAATGA 59.192 45.455 3.32 0.00 36.29 2.57
5484 5976 2.807967 TGAAACGCCAGACTGAAATGAG 59.192 45.455 3.32 0.00 0.00 2.90
5485 5977 2.550830 AACGCCAGACTGAAATGAGT 57.449 45.000 3.32 0.00 0.00 3.41
5486 5978 2.086054 ACGCCAGACTGAAATGAGTC 57.914 50.000 3.32 0.00 42.45 3.36
5487 5979 1.338200 ACGCCAGACTGAAATGAGTCC 60.338 52.381 3.32 0.00 43.04 3.85
5488 5980 1.743996 GCCAGACTGAAATGAGTCCC 58.256 55.000 3.32 0.00 43.04 4.46
5489 5981 1.003580 GCCAGACTGAAATGAGTCCCA 59.996 52.381 3.32 0.00 43.04 4.37
5490 5982 2.553028 GCCAGACTGAAATGAGTCCCAA 60.553 50.000 3.32 0.00 43.04 4.12
5491 5983 3.875369 GCCAGACTGAAATGAGTCCCAAT 60.875 47.826 3.32 0.00 43.04 3.16
5492 5984 4.626287 GCCAGACTGAAATGAGTCCCAATA 60.626 45.833 3.32 0.00 43.04 1.90
5493 5985 4.878397 CCAGACTGAAATGAGTCCCAATAC 59.122 45.833 3.32 0.00 43.04 1.89
5494 5986 5.491070 CAGACTGAAATGAGTCCCAATACA 58.509 41.667 0.00 0.00 43.04 2.29
5495 5987 5.583854 CAGACTGAAATGAGTCCCAATACAG 59.416 44.000 0.00 0.00 43.04 2.74
5496 5988 5.485353 AGACTGAAATGAGTCCCAATACAGA 59.515 40.000 0.00 0.00 43.04 3.41
5497 5989 6.013379 AGACTGAAATGAGTCCCAATACAGAA 60.013 38.462 0.00 0.00 43.04 3.02
5498 5990 6.176183 ACTGAAATGAGTCCCAATACAGAAG 58.824 40.000 0.00 0.00 0.00 2.85
5499 5991 4.943705 TGAAATGAGTCCCAATACAGAAGC 59.056 41.667 0.00 0.00 0.00 3.86
5500 5992 2.672961 TGAGTCCCAATACAGAAGCG 57.327 50.000 0.00 0.00 0.00 4.68
5501 5993 2.176045 TGAGTCCCAATACAGAAGCGA 58.824 47.619 0.00 0.00 0.00 4.93
5502 5994 2.565391 TGAGTCCCAATACAGAAGCGAA 59.435 45.455 0.00 0.00 0.00 4.70
5503 5995 3.197766 TGAGTCCCAATACAGAAGCGAAT 59.802 43.478 0.00 0.00 0.00 3.34
5504 5996 3.798202 AGTCCCAATACAGAAGCGAATC 58.202 45.455 0.00 0.00 0.00 2.52
5505 5997 2.872858 GTCCCAATACAGAAGCGAATCC 59.127 50.000 0.00 0.00 0.00 3.01
5506 5998 1.867233 CCCAATACAGAAGCGAATCCG 59.133 52.381 0.00 0.00 39.16 4.18
5507 5999 2.550978 CCAATACAGAAGCGAATCCGT 58.449 47.619 0.00 0.00 38.24 4.69
5508 6000 2.936498 CCAATACAGAAGCGAATCCGTT 59.064 45.455 0.00 0.00 38.24 4.44
5509 6001 3.001330 CCAATACAGAAGCGAATCCGTTC 59.999 47.826 0.00 0.00 38.24 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.949257 CCGCTAATTTGGCCCGATC 59.051 57.895 0.00 0.00 0.00 3.69
2 3 2.826738 GCCGCTAATTTGGCCCGA 60.827 61.111 0.00 0.00 45.73 5.14
7 8 2.022762 GACGCGCCGCTAATTTGG 59.977 61.111 5.73 0.00 0.00 3.28
8 9 2.022762 GGACGCGCCGCTAATTTG 59.977 61.111 5.73 0.00 0.00 2.32
22 23 4.131088 GAGGGCACGACCTCGGAC 62.131 72.222 2.42 0.00 46.81 4.79
27 28 0.620556 AAATGATGAGGGCACGACCT 59.379 50.000 0.00 0.00 45.57 3.85
28 29 0.734889 CAAATGATGAGGGCACGACC 59.265 55.000 0.00 0.00 37.93 4.79
29 30 1.453155 ACAAATGATGAGGGCACGAC 58.547 50.000 0.00 0.00 0.00 4.34
30 31 1.811965 CAACAAATGATGAGGGCACGA 59.188 47.619 0.00 0.00 0.00 4.35
31 32 1.811965 TCAACAAATGATGAGGGCACG 59.188 47.619 0.00 0.00 31.50 5.34
32 33 3.256631 AGTTCAACAAATGATGAGGGCAC 59.743 43.478 0.00 0.00 38.03 5.01
33 34 3.256383 CAGTTCAACAAATGATGAGGGCA 59.744 43.478 0.00 0.00 38.03 5.36
34 35 3.507233 TCAGTTCAACAAATGATGAGGGC 59.493 43.478 0.00 0.00 38.03 5.19
35 36 5.710513 TTCAGTTCAACAAATGATGAGGG 57.289 39.130 0.00 0.00 36.52 4.30
36 37 7.372714 TGATTTCAGTTCAACAAATGATGAGG 58.627 34.615 0.00 0.00 36.52 3.86
37 38 8.806177 TTGATTTCAGTTCAACAAATGATGAG 57.194 30.769 0.00 0.00 36.52 2.90
38 39 9.767228 ATTTGATTTCAGTTCAACAAATGATGA 57.233 25.926 0.00 0.00 36.52 2.92
43 44 9.381033 TGTTCATTTGATTTCAGTTCAACAAAT 57.619 25.926 0.00 0.00 38.09 2.32
56 57 6.245890 TCCCTTGGTTTGTTCATTTGATTT 57.754 33.333 0.00 0.00 0.00 2.17
88 90 7.565680 ACTCAATCTTTCTGGACGGTATTATT 58.434 34.615 0.00 0.00 0.00 1.40
111 113 1.672356 GCAGTGGCGACATGGAACT 60.672 57.895 0.00 0.00 46.14 3.01
159 161 3.838271 GTGCCGCCGATCTCCTCA 61.838 66.667 0.00 0.00 0.00 3.86
177 179 4.350620 CGATCTCCTTGGCATCGG 57.649 61.111 10.89 0.00 36.58 4.18
263 265 1.831652 CGCCAGGACTTCTTGGGTCT 61.832 60.000 9.28 0.00 42.72 3.85
328 330 3.044305 AGCACTTGAAGCGGACGC 61.044 61.111 8.91 8.91 42.33 5.19
418 420 9.913310 TTCCCCATTTTCAATTACTTTTCTTTT 57.087 25.926 0.00 0.00 0.00 2.27
438 442 2.023598 TGATTACCATGCCATTTCCCCA 60.024 45.455 0.00 0.00 0.00 4.96
441 445 3.706086 ACCTTGATTACCATGCCATTTCC 59.294 43.478 0.00 0.00 0.00 3.13
442 446 4.685924 CACCTTGATTACCATGCCATTTC 58.314 43.478 0.00 0.00 0.00 2.17
461 465 0.949105 CCACCTAGTTCGTGTGCACC 60.949 60.000 15.69 4.74 0.00 5.01
495 499 7.324935 TCGTAAAACTGCCACTCTCAATATTA 58.675 34.615 0.00 0.00 0.00 0.98
499 503 4.002906 TCGTAAAACTGCCACTCTCAAT 57.997 40.909 0.00 0.00 0.00 2.57
517 521 2.936498 CACTTTCAATATCGGGCTTCGT 59.064 45.455 0.60 0.00 40.32 3.85
605 609 3.006430 GTGGTGGGATTAAACAACCTTGG 59.994 47.826 8.17 0.00 0.00 3.61
638 642 7.781056 TGCAGGAAGTGATTAAAGAACTTTTT 58.219 30.769 5.14 0.00 34.37 1.94
641 645 6.299141 TCTGCAGGAAGTGATTAAAGAACTT 58.701 36.000 15.13 1.64 36.87 2.66
642 646 5.869579 TCTGCAGGAAGTGATTAAAGAACT 58.130 37.500 15.13 0.00 0.00 3.01
842 879 5.683859 TCTCTGTTTCTCGTACTACGTTTC 58.316 41.667 8.42 0.00 43.14 2.78
912 955 1.474478 TCTTCTTCGCTGCCTCTGTAG 59.526 52.381 0.00 0.00 0.00 2.74
913 956 1.474478 CTCTTCTTCGCTGCCTCTGTA 59.526 52.381 0.00 0.00 0.00 2.74
914 957 0.246086 CTCTTCTTCGCTGCCTCTGT 59.754 55.000 0.00 0.00 0.00 3.41
915 958 0.459934 CCTCTTCTTCGCTGCCTCTG 60.460 60.000 0.00 0.00 0.00 3.35
916 959 1.612395 CCCTCTTCTTCGCTGCCTCT 61.612 60.000 0.00 0.00 0.00 3.69
917 960 1.153469 CCCTCTTCTTCGCTGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
918 961 2.985456 CCCTCTTCTTCGCTGCCT 59.015 61.111 0.00 0.00 0.00 4.75
959 1006 0.025513 CTCGCTTCGATTTGGCTTCG 59.974 55.000 0.00 0.00 34.61 3.79
968 1015 0.670706 TATGCAGAGCTCGCTTCGAT 59.329 50.000 24.04 15.00 34.61 3.59
969 1016 0.670706 ATATGCAGAGCTCGCTTCGA 59.329 50.000 24.04 10.15 0.00 3.71
1184 1233 2.168521 CTGTATGTTGGGGATGAGACGT 59.831 50.000 0.00 0.00 0.00 4.34
1201 1255 4.842531 TCTTCCCTGAAATGCATCTGTA 57.157 40.909 0.00 0.00 0.00 2.74
1205 1259 5.771666 TGGATATTCTTCCCTGAAATGCATC 59.228 40.000 0.00 0.00 34.67 3.91
1206 1260 5.708544 TGGATATTCTTCCCTGAAATGCAT 58.291 37.500 0.00 0.00 34.67 3.96
1207 1261 5.128033 TGGATATTCTTCCCTGAAATGCA 57.872 39.130 0.00 0.00 34.67 3.96
1208 1262 5.771666 TGATGGATATTCTTCCCTGAAATGC 59.228 40.000 0.00 0.00 34.67 3.56
1223 1277 3.120165 CGTCTCGTCACGATGATGGATAT 60.120 47.826 0.00 0.00 42.69 1.63
1224 1278 2.223377 CGTCTCGTCACGATGATGGATA 59.777 50.000 0.00 0.00 42.69 2.59
1273 1327 1.259840 AACAATGCACCCCTGCCATC 61.260 55.000 0.00 0.00 43.51 3.51
1319 1373 2.045926 ATGTGCGAGTTCCTGCCC 60.046 61.111 0.00 0.00 0.00 5.36
1349 1403 3.181492 CGTAGATGAAGAAGAGCTGCTCA 60.181 47.826 29.49 10.75 32.06 4.26
1397 1451 2.366266 GGTGAAGGTATATGCGTACCCA 59.634 50.000 8.61 0.00 44.25 4.51
1405 1465 7.624360 TTAACAAAGCTGGTGAAGGTATATG 57.376 36.000 4.72 0.00 34.84 1.78
1411 1471 5.464168 CAGAATTAACAAAGCTGGTGAAGG 58.536 41.667 4.72 0.00 0.00 3.46
1430 1490 3.768757 CCAAAATCCAATACAGGGCAGAA 59.231 43.478 0.00 0.00 0.00 3.02
1436 1496 5.590259 CAGTACCTCCAAAATCCAATACAGG 59.410 44.000 0.00 0.00 0.00 4.00
1473 1533 6.947158 ACTCAGTAAAGTACTACTAGCTGGTT 59.053 38.462 8.46 0.00 37.23 3.67
1481 1541 5.535406 ACACAGCACTCAGTAAAGTACTACT 59.465 40.000 0.00 0.00 37.23 2.57
1482 1542 5.629849 CACACAGCACTCAGTAAAGTACTAC 59.370 44.000 0.00 0.00 37.23 2.73
1507 1568 1.153349 GAGGAGCCATGGACGGTTC 60.153 63.158 18.40 4.06 35.65 3.62
1511 1572 1.227089 CGAAGAGGAGCCATGGACG 60.227 63.158 18.40 3.51 0.00 4.79
1592 1653 1.940613 CCGAGATGAAAACCCCGAATC 59.059 52.381 0.00 0.00 0.00 2.52
1635 1696 4.869297 AGTCGAAGAATCAGCAAAGAGATG 59.131 41.667 0.00 0.00 39.69 2.90
1637 1698 4.527509 AGTCGAAGAATCAGCAAAGAGA 57.472 40.909 0.00 0.00 39.69 3.10
1663 1724 2.113860 TGCCCAAGTAAGACATGCTC 57.886 50.000 0.00 0.00 0.00 4.26
1664 1725 2.291153 ACATGCCCAAGTAAGACATGCT 60.291 45.455 0.00 0.00 41.38 3.79
1756 1817 5.008613 TGTTCTTCACTCATGTAAAGTTGGC 59.991 40.000 0.00 0.00 0.00 4.52
1803 1965 1.888512 GCCCTTTTGTGAGCAGAATCA 59.111 47.619 0.00 0.00 0.00 2.57
1825 1988 3.053455 GCAGACATCGCTAGTATGGAAC 58.947 50.000 10.69 3.97 0.00 3.62
1837 2000 6.644181 AGTTCACAATATCTATGCAGACATCG 59.356 38.462 0.00 0.00 37.74 3.84
1840 2003 7.069950 ACCTAGTTCACAATATCTATGCAGACA 59.930 37.037 0.00 0.00 32.25 3.41
1846 2009 7.498900 TGCCAAACCTAGTTCACAATATCTATG 59.501 37.037 0.00 0.00 0.00 2.23
1847 2010 7.573710 TGCCAAACCTAGTTCACAATATCTAT 58.426 34.615 0.00 0.00 0.00 1.98
1890 2060 5.105756 GGAGACAAAACCAACCCATATTCAG 60.106 44.000 0.00 0.00 0.00 3.02
1997 2167 2.640316 AGGGGGCGATGAGTTTAATC 57.360 50.000 0.00 0.00 0.00 1.75
2000 2170 0.544697 GGAAGGGGGCGATGAGTTTA 59.455 55.000 0.00 0.00 0.00 2.01
2004 2174 4.918201 GCGGAAGGGGGCGATGAG 62.918 72.222 0.00 0.00 0.00 2.90
2060 2230 2.418884 GGGCGAAAAGACAAAACCCAAA 60.419 45.455 0.00 0.00 35.84 3.28
2080 2250 3.253955 CGAAAGGTCGCCACTTGG 58.746 61.111 0.00 0.00 41.08 3.61
2091 2261 1.470098 CTCCAAGCATCCAACGAAAGG 59.530 52.381 0.00 0.00 0.00 3.11
2114 2284 2.480037 TCACATTGTCACTCGATGCAAC 59.520 45.455 0.00 0.00 40.60 4.17
2124 2294 0.035439 ACCCCGGATCACATTGTCAC 60.035 55.000 0.73 0.00 0.00 3.67
2139 2309 1.543429 CCGCAATCCATAAGAGACCCC 60.543 57.143 0.00 0.00 0.00 4.95
2168 2338 1.676006 GTTACCAACAGCACAGCTTGT 59.324 47.619 0.00 0.00 36.40 3.16
2170 2340 1.318576 GGTTACCAACAGCACAGCTT 58.681 50.000 0.00 0.00 36.40 3.74
2397 2571 0.398381 AAGCAAAAGGAAGTGGCCCA 60.398 50.000 0.00 0.00 0.00 5.36
2438 2612 4.282957 TCCCAGTGCTGCAATTCAAAAATA 59.717 37.500 2.77 0.00 0.00 1.40
2495 2669 2.203280 CACCCAACGGACCTGCAA 60.203 61.111 0.00 0.00 0.00 4.08
2510 2684 8.713271 CAAGAGGTTAGAATAGAACTTGAACAC 58.287 37.037 0.00 0.00 36.59 3.32
2525 2699 5.365605 TGGAGAAAACACTCAAGAGGTTAGA 59.634 40.000 1.73 0.00 38.51 2.10
2526 2700 5.467063 GTGGAGAAAACACTCAAGAGGTTAG 59.533 44.000 1.73 0.00 38.51 2.34
2711 2885 0.171903 CCGCCCTGCTTTTGATCTTG 59.828 55.000 0.00 0.00 0.00 3.02
2724 2898 2.640184 GATAACTTTTAGCACCGCCCT 58.360 47.619 0.00 0.00 0.00 5.19
2889 3076 6.703607 GTGAACAGTCCGATCTGATATCATTT 59.296 38.462 5.72 0.00 38.63 2.32
2975 3162 1.276421 ACAGAAGATGGACGGAACCAG 59.724 52.381 0.00 0.00 43.49 4.00
2995 3183 6.777580 GGGGAGGAATTCAGAATATAAAAGCA 59.222 38.462 7.93 0.00 0.00 3.91
3009 3197 3.099141 TGCAAAATCAGGGGAGGAATTC 58.901 45.455 0.00 0.00 0.00 2.17
3156 3344 4.942761 AAATGAATGTTTGCTCAGGTGT 57.057 36.364 0.00 0.00 0.00 4.16
3157 3345 4.449743 CCAAAATGAATGTTTGCTCAGGTG 59.550 41.667 0.00 0.00 35.13 4.00
3158 3346 4.634199 CCAAAATGAATGTTTGCTCAGGT 58.366 39.130 0.00 0.00 35.13 4.00
3159 3347 3.434299 GCCAAAATGAATGTTTGCTCAGG 59.566 43.478 0.00 0.00 35.13 3.86
3160 3348 4.059511 TGCCAAAATGAATGTTTGCTCAG 58.940 39.130 0.00 0.00 35.13 3.35
3161 3349 4.059511 CTGCCAAAATGAATGTTTGCTCA 58.940 39.130 0.00 0.00 35.13 4.26
3162 3350 4.060205 ACTGCCAAAATGAATGTTTGCTC 58.940 39.130 0.00 0.00 35.13 4.26
3446 3636 2.992543 GGTCTCAGCGATGAATGATAGC 59.007 50.000 4.32 0.00 33.05 2.97
3572 3763 6.069331 TGAGAGAAGTGACTAGTACTTTGGT 58.931 40.000 0.00 0.00 38.42 3.67
3838 4098 6.599638 CAGAGGTTTTTCTACCAGGGAATAAG 59.400 42.308 0.00 0.00 40.82 1.73
3857 4117 8.105829 AGAATTTTGAGTACATCATTCAGAGGT 58.894 33.333 0.00 0.00 44.60 3.85
3982 4243 6.199342 GTCTTCTCGTATTATCTCAAAGGCAC 59.801 42.308 0.00 0.00 0.00 5.01
4182 4445 1.468520 GCTTCAATGTGCCGTGTATGT 59.531 47.619 0.00 0.00 0.00 2.29
4183 4446 1.739466 AGCTTCAATGTGCCGTGTATG 59.261 47.619 0.00 0.00 0.00 2.39
4197 4460 6.231258 AGTGATCAGAATGTATCAGCTTCA 57.769 37.500 0.00 0.00 34.79 3.02
4219 4482 2.951642 TCAAGAAGCCAAACACCTGAAG 59.048 45.455 0.00 0.00 0.00 3.02
4417 4680 0.539051 GTGTGGATGGGTCTCTCCAG 59.461 60.000 0.00 0.00 42.10 3.86
4554 4876 6.932356 ACTCGATTATACTCCAGTCGTAAA 57.068 37.500 0.00 0.00 34.24 2.01
4607 4932 7.480810 ACTAACCAAAGACACAAAATTCAGAC 58.519 34.615 0.00 0.00 0.00 3.51
4639 4964 8.482852 AACTTTACACTGGTAAGTAGTAAGGA 57.517 34.615 0.00 0.00 40.40 3.36
4640 4965 8.985805 CAAACTTTACACTGGTAAGTAGTAAGG 58.014 37.037 0.00 0.00 40.40 2.69
4644 4969 9.317936 GTTACAAACTTTACACTGGTAAGTAGT 57.682 33.333 0.00 0.00 40.40 2.73
4645 4970 9.316730 TGTTACAAACTTTACACTGGTAAGTAG 57.683 33.333 0.00 0.00 40.40 2.57
4647 4972 8.617809 CATGTTACAAACTTTACACTGGTAAGT 58.382 33.333 0.00 0.00 40.40 2.24
4648 4973 8.832521 TCATGTTACAAACTTTACACTGGTAAG 58.167 33.333 0.00 0.00 40.40 2.34
4649 4974 8.734218 TCATGTTACAAACTTTACACTGGTAA 57.266 30.769 0.00 0.00 37.70 2.85
4820 5163 2.772691 GCGAGTCCCCGGAGTACAG 61.773 68.421 0.73 0.00 0.00 2.74
5003 5355 2.808567 GCTCCAAACCCTAGCTAGATGC 60.809 54.545 22.70 9.68 43.29 3.91
5004 5356 2.435805 TGCTCCAAACCCTAGCTAGATG 59.564 50.000 22.70 14.54 37.16 2.90
5005 5357 2.764269 TGCTCCAAACCCTAGCTAGAT 58.236 47.619 22.70 6.99 37.16 1.98
5006 5358 2.247699 TGCTCCAAACCCTAGCTAGA 57.752 50.000 22.70 0.00 37.16 2.43
5007 5359 2.420687 CCTTGCTCCAAACCCTAGCTAG 60.421 54.545 14.20 14.20 38.36 3.42
5023 5375 1.754234 CAGCCACCATACCCCTTGC 60.754 63.158 0.00 0.00 0.00 4.01
5032 5384 1.690845 CCCTCTCTAGTCAGCCACCAT 60.691 57.143 0.00 0.00 0.00 3.55
5089 5442 0.475044 AAACCCACGTTGCCCTAAGA 59.525 50.000 0.00 0.00 30.72 2.10
5090 5443 1.324383 AAAACCCACGTTGCCCTAAG 58.676 50.000 0.00 0.00 30.72 2.18
5130 5616 3.555117 TTACCCACTCTCCTACCACTT 57.445 47.619 0.00 0.00 0.00 3.16
5131 5617 3.555117 TTTACCCACTCTCCTACCACT 57.445 47.619 0.00 0.00 0.00 4.00
5132 5618 4.344390 CCTATTTACCCACTCTCCTACCAC 59.656 50.000 0.00 0.00 0.00 4.16
5133 5619 4.553678 CCTATTTACCCACTCTCCTACCA 58.446 47.826 0.00 0.00 0.00 3.25
5134 5620 3.324268 GCCTATTTACCCACTCTCCTACC 59.676 52.174 0.00 0.00 0.00 3.18
5135 5621 3.324268 GGCCTATTTACCCACTCTCCTAC 59.676 52.174 0.00 0.00 0.00 3.18
5136 5622 3.209152 AGGCCTATTTACCCACTCTCCTA 59.791 47.826 1.29 0.00 0.00 2.94
5137 5623 2.021936 AGGCCTATTTACCCACTCTCCT 60.022 50.000 1.29 0.00 0.00 3.69
5138 5624 2.409570 AGGCCTATTTACCCACTCTCC 58.590 52.381 1.29 0.00 0.00 3.71
5139 5625 3.579151 CCTAGGCCTATTTACCCACTCTC 59.421 52.174 14.30 0.00 0.00 3.20
5140 5626 3.051264 ACCTAGGCCTATTTACCCACTCT 60.051 47.826 14.30 0.00 0.00 3.24
5206 5696 5.240623 TGTCCTTAGCTTTTGTGGTATGTTG 59.759 40.000 0.00 0.00 0.00 3.33
5241 5731 7.164803 TGGTTTTGAACTGATTTGGTCTTTTT 58.835 30.769 0.00 0.00 0.00 1.94
5242 5732 6.706295 TGGTTTTGAACTGATTTGGTCTTTT 58.294 32.000 0.00 0.00 0.00 2.27
5243 5733 6.293004 TGGTTTTGAACTGATTTGGTCTTT 57.707 33.333 0.00 0.00 0.00 2.52
5245 5735 5.930837 TTGGTTTTGAACTGATTTGGTCT 57.069 34.783 0.00 0.00 0.00 3.85
5246 5736 8.655651 TTATTTGGTTTTGAACTGATTTGGTC 57.344 30.769 0.00 0.00 0.00 4.02
5282 5772 5.312079 AGCTATGAAGTGCTTCTGTCTTTT 58.688 37.500 12.44 0.00 40.14 2.27
5283 5773 4.904241 AGCTATGAAGTGCTTCTGTCTTT 58.096 39.130 12.44 0.00 40.14 2.52
5284 5774 4.550076 AGCTATGAAGTGCTTCTGTCTT 57.450 40.909 12.44 0.00 40.14 3.01
5285 5775 4.550076 AAGCTATGAAGTGCTTCTGTCT 57.450 40.909 12.44 3.21 45.09 3.41
5324 5814 9.569122 TTCAACTTAAGTTAGAACCTTTATGCT 57.431 29.630 20.15 0.00 36.32 3.79
5325 5815 9.827411 CTTCAACTTAAGTTAGAACCTTTATGC 57.173 33.333 20.15 0.00 36.32 3.14
5370 5862 9.146586 ACATCCAAACATGGCATAAGTTATATT 57.853 29.630 0.00 0.00 0.00 1.28
5374 5866 6.095300 CAGACATCCAAACATGGCATAAGTTA 59.905 38.462 0.00 0.00 33.69 2.24
5375 5867 5.018809 AGACATCCAAACATGGCATAAGTT 58.981 37.500 0.00 0.00 33.69 2.66
5376 5868 4.400251 CAGACATCCAAACATGGCATAAGT 59.600 41.667 0.00 0.00 33.69 2.24
5377 5869 4.400251 ACAGACATCCAAACATGGCATAAG 59.600 41.667 0.00 0.00 33.69 1.73
5378 5870 4.343231 ACAGACATCCAAACATGGCATAA 58.657 39.130 0.00 0.00 33.69 1.90
5379 5871 3.966979 ACAGACATCCAAACATGGCATA 58.033 40.909 0.00 0.00 33.69 3.14
5380 5872 2.811410 ACAGACATCCAAACATGGCAT 58.189 42.857 0.00 0.00 33.69 4.40
5381 5873 2.291209 ACAGACATCCAAACATGGCA 57.709 45.000 0.00 0.00 33.69 4.92
5382 5874 4.398988 TCAATACAGACATCCAAACATGGC 59.601 41.667 0.00 0.00 30.97 4.40
5383 5875 5.449588 GCTCAATACAGACATCCAAACATGG 60.450 44.000 0.00 0.00 0.00 3.66
5384 5876 5.449588 GGCTCAATACAGACATCCAAACATG 60.450 44.000 0.00 0.00 0.00 3.21
5385 5877 4.641989 GGCTCAATACAGACATCCAAACAT 59.358 41.667 0.00 0.00 0.00 2.71
5386 5878 4.009675 GGCTCAATACAGACATCCAAACA 58.990 43.478 0.00 0.00 0.00 2.83
5387 5879 4.265073 AGGCTCAATACAGACATCCAAAC 58.735 43.478 0.00 0.00 0.00 2.93
5388 5880 4.517285 GAGGCTCAATACAGACATCCAAA 58.483 43.478 10.25 0.00 0.00 3.28
5389 5881 3.118261 GGAGGCTCAATACAGACATCCAA 60.118 47.826 17.69 0.00 0.00 3.53
5390 5882 2.435805 GGAGGCTCAATACAGACATCCA 59.564 50.000 17.69 0.00 0.00 3.41
5391 5883 2.546795 CGGAGGCTCAATACAGACATCC 60.547 54.545 17.69 0.00 0.00 3.51
5392 5884 2.362397 TCGGAGGCTCAATACAGACATC 59.638 50.000 17.69 0.00 0.00 3.06
5393 5885 2.388735 TCGGAGGCTCAATACAGACAT 58.611 47.619 17.69 0.00 0.00 3.06
5394 5886 1.847328 TCGGAGGCTCAATACAGACA 58.153 50.000 17.69 0.00 0.00 3.41
5395 5887 2.961526 TTCGGAGGCTCAATACAGAC 57.038 50.000 17.69 0.00 0.00 3.51
5396 5888 3.432186 CCAATTCGGAGGCTCAATACAGA 60.432 47.826 17.69 2.66 36.56 3.41
5397 5889 2.874701 CCAATTCGGAGGCTCAATACAG 59.125 50.000 17.69 1.63 36.56 2.74
5398 5890 2.503765 TCCAATTCGGAGGCTCAATACA 59.496 45.455 17.69 0.00 39.64 2.29
5399 5891 3.194005 TCCAATTCGGAGGCTCAATAC 57.806 47.619 17.69 0.00 39.64 1.89
5412 5904 4.610945 CCAGGCAATACGAAATCCAATTC 58.389 43.478 0.00 0.00 0.00 2.17
5413 5905 3.181476 GCCAGGCAATACGAAATCCAATT 60.181 43.478 6.55 0.00 0.00 2.32
5414 5906 2.362077 GCCAGGCAATACGAAATCCAAT 59.638 45.455 6.55 0.00 0.00 3.16
5415 5907 1.748493 GCCAGGCAATACGAAATCCAA 59.252 47.619 6.55 0.00 0.00 3.53
5416 5908 1.064758 AGCCAGGCAATACGAAATCCA 60.065 47.619 15.80 0.00 0.00 3.41
5417 5909 1.334869 CAGCCAGGCAATACGAAATCC 59.665 52.381 15.80 0.00 0.00 3.01
5418 5910 1.268743 GCAGCCAGGCAATACGAAATC 60.269 52.381 15.80 0.00 0.00 2.17
5419 5911 0.740737 GCAGCCAGGCAATACGAAAT 59.259 50.000 15.80 0.00 0.00 2.17
5420 5912 1.312371 GGCAGCCAGGCAATACGAAA 61.312 55.000 15.80 0.00 43.51 3.46
5421 5913 1.748879 GGCAGCCAGGCAATACGAA 60.749 57.895 15.80 0.00 43.51 3.85
5422 5914 2.124736 GGCAGCCAGGCAATACGA 60.125 61.111 15.80 0.00 43.51 3.43
5429 5921 2.890371 CTGAATTGGCAGCCAGGC 59.110 61.111 15.50 1.84 44.50 4.85
5435 5927 1.614903 TCCAAACAGCTGAATTGGCAG 59.385 47.619 32.77 19.74 42.65 4.85
5436 5928 1.702182 TCCAAACAGCTGAATTGGCA 58.298 45.000 32.77 24.15 42.65 4.92
5437 5929 2.613691 CATCCAAACAGCTGAATTGGC 58.386 47.619 32.77 0.00 42.65 4.52
5438 5930 2.613691 GCATCCAAACAGCTGAATTGG 58.386 47.619 32.24 32.24 43.97 3.16
5439 5931 2.256174 CGCATCCAAACAGCTGAATTG 58.744 47.619 23.35 22.48 0.00 2.32
5440 5932 1.403249 GCGCATCCAAACAGCTGAATT 60.403 47.619 23.35 12.20 0.00 2.17
5441 5933 0.171903 GCGCATCCAAACAGCTGAAT 59.828 50.000 23.35 5.76 0.00 2.57
5442 5934 1.171549 TGCGCATCCAAACAGCTGAA 61.172 50.000 23.35 0.09 0.00 3.02
5443 5935 1.600356 TGCGCATCCAAACAGCTGA 60.600 52.632 23.35 0.00 0.00 4.26
5444 5936 1.443194 GTGCGCATCCAAACAGCTG 60.443 57.895 15.91 13.48 0.00 4.24
5445 5937 1.601759 AGTGCGCATCCAAACAGCT 60.602 52.632 15.91 0.00 0.00 4.24
5446 5938 1.443194 CAGTGCGCATCCAAACAGC 60.443 57.895 15.91 0.00 0.00 4.40
5447 5939 0.592637 TTCAGTGCGCATCCAAACAG 59.407 50.000 15.91 0.00 0.00 3.16
5448 5940 1.028130 TTTCAGTGCGCATCCAAACA 58.972 45.000 15.91 0.00 0.00 2.83
5449 5941 1.408422 GTTTCAGTGCGCATCCAAAC 58.592 50.000 15.91 18.01 0.00 2.93
5450 5942 0.040514 CGTTTCAGTGCGCATCCAAA 60.041 50.000 15.91 9.97 0.00 3.28
5451 5943 1.573932 CGTTTCAGTGCGCATCCAA 59.426 52.632 15.91 3.20 0.00 3.53
5452 5944 3.252964 CGTTTCAGTGCGCATCCA 58.747 55.556 15.91 0.00 0.00 3.41
5458 5950 1.956170 AGTCTGGCGTTTCAGTGCG 60.956 57.895 0.00 0.00 36.25 5.34
5459 5951 0.880278 TCAGTCTGGCGTTTCAGTGC 60.880 55.000 0.00 0.00 36.25 4.40
5460 5952 1.581934 TTCAGTCTGGCGTTTCAGTG 58.418 50.000 0.00 0.00 36.25 3.66
5461 5953 2.325583 TTTCAGTCTGGCGTTTCAGT 57.674 45.000 0.00 0.00 36.25 3.41
5462 5954 2.807967 TCATTTCAGTCTGGCGTTTCAG 59.192 45.455 0.00 0.00 36.17 3.02
5463 5955 2.807967 CTCATTTCAGTCTGGCGTTTCA 59.192 45.455 0.00 0.00 0.00 2.69
5464 5956 2.808543 ACTCATTTCAGTCTGGCGTTTC 59.191 45.455 0.00 0.00 0.00 2.78
5465 5957 2.808543 GACTCATTTCAGTCTGGCGTTT 59.191 45.455 0.00 0.00 39.91 3.60
5466 5958 2.417719 GACTCATTTCAGTCTGGCGTT 58.582 47.619 0.00 0.00 39.91 4.84
5467 5959 1.338200 GGACTCATTTCAGTCTGGCGT 60.338 52.381 0.00 0.00 42.31 5.68
5468 5960 1.363744 GGACTCATTTCAGTCTGGCG 58.636 55.000 0.00 0.00 42.31 5.69
5469 5961 1.003580 TGGGACTCATTTCAGTCTGGC 59.996 52.381 0.00 0.00 42.31 4.85
5470 5962 3.423539 TTGGGACTCATTTCAGTCTGG 57.576 47.619 0.00 0.00 42.31 3.86
5471 5963 5.491070 TGTATTGGGACTCATTTCAGTCTG 58.509 41.667 0.00 0.00 42.31 3.51
5472 5964 5.485353 TCTGTATTGGGACTCATTTCAGTCT 59.515 40.000 4.42 0.00 42.31 3.24
5473 5965 5.734720 TCTGTATTGGGACTCATTTCAGTC 58.265 41.667 4.42 0.00 41.99 3.51
5474 5966 5.762179 TCTGTATTGGGACTCATTTCAGT 57.238 39.130 4.42 0.00 30.94 3.41
5475 5967 5.065731 GCTTCTGTATTGGGACTCATTTCAG 59.934 44.000 0.00 0.00 0.00 3.02
5476 5968 4.943705 GCTTCTGTATTGGGACTCATTTCA 59.056 41.667 0.00 0.00 0.00 2.69
5477 5969 4.034510 CGCTTCTGTATTGGGACTCATTTC 59.965 45.833 0.00 0.00 0.00 2.17
5478 5970 3.941483 CGCTTCTGTATTGGGACTCATTT 59.059 43.478 0.00 0.00 0.00 2.32
5479 5971 3.197766 TCGCTTCTGTATTGGGACTCATT 59.802 43.478 0.00 0.00 0.00 2.57
5480 5972 2.766263 TCGCTTCTGTATTGGGACTCAT 59.234 45.455 0.00 0.00 0.00 2.90
5481 5973 2.176045 TCGCTTCTGTATTGGGACTCA 58.824 47.619 0.00 0.00 0.00 3.41
5482 5974 2.961526 TCGCTTCTGTATTGGGACTC 57.038 50.000 0.00 0.00 0.00 3.36
5483 5975 3.432326 GGATTCGCTTCTGTATTGGGACT 60.432 47.826 0.00 0.00 0.00 3.85
5484 5976 2.872858 GGATTCGCTTCTGTATTGGGAC 59.127 50.000 0.00 0.00 0.00 4.46
5485 5977 2.483013 CGGATTCGCTTCTGTATTGGGA 60.483 50.000 0.00 0.00 0.00 4.37
5486 5978 1.867233 CGGATTCGCTTCTGTATTGGG 59.133 52.381 0.00 0.00 0.00 4.12
5487 5979 2.550978 ACGGATTCGCTTCTGTATTGG 58.449 47.619 0.00 0.00 40.63 3.16
5488 5980 4.183539 GAACGGATTCGCTTCTGTATTG 57.816 45.455 0.00 0.00 40.63 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.