Multiple sequence alignment - TraesCS7B01G191000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G191000 chr7B 100.000 5024 0 0 1 5024 328788278 328783255 0.000000e+00 9278.0
1 TraesCS7B01G191000 chr7B 96.310 271 10 0 665 935 328784454 328784184 3.570000e-121 446.0
2 TraesCS7B01G191000 chr7B 96.310 271 10 0 3825 4095 328787614 328787344 3.570000e-121 446.0
3 TraesCS7B01G191000 chr7B 88.750 320 35 1 927 1245 389095369 389095688 1.700000e-104 390.0
4 TraesCS7B01G191000 chr7B 82.262 451 77 3 927 1375 389100773 389101222 2.190000e-103 387.0
5 TraesCS7B01G191000 chr7B 81.978 455 74 6 927 1378 389097809 389098258 3.670000e-101 379.0
6 TraesCS7B01G191000 chr3D 94.231 1716 92 3 1826 3537 594534901 594536613 0.000000e+00 2614.0
7 TraesCS7B01G191000 chr3D 89.060 649 57 2 1200 1840 594526121 594526763 0.000000e+00 793.0
8 TraesCS7B01G191000 chr3D 89.700 466 39 6 3532 3995 594537205 594537663 2.020000e-163 586.0
9 TraesCS7B01G191000 chr3D 88.068 176 15 4 661 835 594525559 594525729 2.370000e-48 204.0
10 TraesCS7B01G191000 chr3D 86.243 189 23 3 3659 3845 503735264 503735451 8.530000e-48 202.0
11 TraesCS7B01G191000 chr3D 86.335 161 15 6 3726 3881 204158824 204158666 8.650000e-38 169.0
12 TraesCS7B01G191000 chr4B 92.897 1267 85 3 2275 3537 144094251 144095516 0.000000e+00 1836.0
13 TraesCS7B01G191000 chr4B 90.909 418 33 4 3593 4008 144095782 144096196 1.580000e-154 556.0
14 TraesCS7B01G191000 chr4B 83.890 509 77 3 3040 3543 295963939 295963431 9.780000e-132 481.0
15 TraesCS7B01G191000 chr4B 96.269 268 8 2 3825 4092 114620520 114620785 5.970000e-119 438.0
16 TraesCS7B01G191000 chr4B 95.539 269 8 4 665 932 114620520 114620785 1.290000e-115 427.0
17 TraesCS7B01G191000 chr4B 91.053 190 11 5 663 848 144092591 144092778 8.350000e-63 252.0
18 TraesCS7B01G191000 chr4B 89.894 188 13 6 665 848 144096011 144096196 2.340000e-58 237.0
19 TraesCS7B01G191000 chr4B 91.729 133 9 2 439 570 351222253 351222122 3.090000e-42 183.0
20 TraesCS7B01G191000 chr2B 89.634 955 71 11 4093 5024 352928189 352929138 0.000000e+00 1190.0
21 TraesCS7B01G191000 chr2B 89.773 616 50 10 10 621 352927525 352928131 0.000000e+00 776.0
22 TraesCS7B01G191000 chr2B 89.513 267 26 2 917 1182 771773495 771773760 2.240000e-88 337.0
23 TraesCS7B01G191000 chr2B 80.317 315 49 11 1 310 588148032 588147726 5.060000e-55 226.0
24 TraesCS7B01G191000 chr2B 100.000 37 0 0 628 664 352928157 352928193 9.030000e-08 69.4
25 TraesCS7B01G191000 chr5D 85.816 564 74 3 3532 4092 152773527 152772967 1.200000e-165 593.0
26 TraesCS7B01G191000 chr5D 87.104 442 46 3 3040 3477 563676705 563676271 1.630000e-134 490.0
27 TraesCS7B01G191000 chr5D 86.425 442 48 4 3040 3477 286179039 286179472 1.640000e-129 473.0
28 TraesCS7B01G191000 chr5D 78.969 718 110 23 664 1361 152776616 152775920 7.670000e-123 451.0
29 TraesCS7B01G191000 chr5D 90.288 278 24 2 3821 4095 152776619 152776342 1.330000e-95 361.0
30 TraesCS7B01G191000 chr5D 86.970 330 31 10 1 327 154326553 154326873 1.330000e-95 361.0
31 TraesCS7B01G191000 chr5D 89.668 271 25 2 665 932 152773237 152772967 4.820000e-90 342.0
32 TraesCS7B01G191000 chr5D 88.710 248 28 0 996 1243 16148156 16147909 2.270000e-78 303.0
33 TraesCS7B01G191000 chr5D 84.295 312 32 15 19 320 168222093 168222397 6.360000e-74 289.0
34 TraesCS7B01G191000 chr1B 87.805 492 60 0 3040 3531 564634790 564634299 1.210000e-160 577.0
35 TraesCS7B01G191000 chr1B 87.879 99 12 0 2072 2170 606402624 606402526 3.180000e-22 117.0
36 TraesCS7B01G191000 chr7D 87.575 499 53 4 3040 3537 529585043 529584553 2.030000e-158 569.0
37 TraesCS7B01G191000 chr3A 86.878 442 47 3 3040 3477 572020096 572019662 7.560000e-133 484.0
38 TraesCS7B01G191000 chr2A 86.878 442 47 3 3040 3477 102427420 102426986 7.560000e-133 484.0
39 TraesCS7B01G191000 chr2A 83.974 468 68 5 3532 3998 303673874 303673413 4.620000e-120 442.0
40 TraesCS7B01G191000 chr2A 81.095 201 27 9 1 198 312605906 312606098 3.130000e-32 150.0
41 TraesCS7B01G191000 chr4D 78.940 717 110 24 665 1361 352452638 352453333 2.760000e-122 449.0
42 TraesCS7B01G191000 chr4D 91.144 271 21 2 3825 4092 352452638 352452908 1.030000e-96 364.0
43 TraesCS7B01G191000 chr4D 85.185 189 25 3 3659 3845 228105944 228106131 1.850000e-44 191.0
44 TraesCS7B01G191000 chr4D 78.275 313 53 9 3579 3881 234696222 234695915 2.390000e-43 187.0
45 TraesCS7B01G191000 chr5A 83.527 431 67 2 3532 3962 295723255 295722829 2.820000e-107 399.0
46 TraesCS7B01G191000 chr5A 85.489 317 32 13 19 327 241467160 241467470 8.120000e-83 318.0
47 TraesCS7B01G191000 chr1D 85.070 355 45 4 1249 1602 47887255 47887602 6.190000e-94 355.0
48 TraesCS7B01G191000 chr1D 85.503 338 43 2 1249 1586 413316601 413316932 1.040000e-91 348.0
49 TraesCS7B01G191000 chr1D 85.156 256 31 6 1475 1727 460315118 460314867 6.450000e-64 255.0
50 TraesCS7B01G191000 chr1D 81.928 249 28 15 1 242 189067545 189067307 1.430000e-45 195.0
51 TraesCS7B01G191000 chr1D 80.795 151 25 3 1817 1963 460314853 460314703 1.140000e-21 115.0
52 TraesCS7B01G191000 chr4A 86.562 320 43 0 926 1245 644449975 644449656 2.220000e-93 353.0
53 TraesCS7B01G191000 chr4A 84.770 348 47 2 1255 1602 610000620 610000279 1.340000e-90 344.0
54 TraesCS7B01G191000 chr4A 84.770 348 47 2 1255 1602 610010630 610010289 1.340000e-90 344.0
55 TraesCS7B01G191000 chr4A 84.483 348 48 2 1255 1602 609950013 609949672 6.230000e-89 339.0
56 TraesCS7B01G191000 chr4A 84.483 348 48 2 1255 1602 610006504 610006163 6.230000e-89 339.0
57 TraesCS7B01G191000 chr4A 84.195 348 49 2 1255 1602 610016507 610016166 2.900000e-87 333.0
58 TraesCS7B01G191000 chr5B 85.304 313 34 9 19 327 190030392 190030088 3.780000e-81 313.0
59 TraesCS7B01G191000 chr3B 80.802 349 60 3 1255 1602 650316360 650316018 2.980000e-67 267.0
60 TraesCS7B01G191000 chr3B 88.889 216 19 5 753 966 432598361 432598573 1.390000e-65 261.0
61 TraesCS7B01G191000 chr3B 89.130 184 18 2 750 932 432602343 432602525 1.410000e-55 228.0
62 TraesCS7B01G191000 chr2D 84.977 213 26 3 3040 3248 37311663 37311453 1.420000e-50 211.0
63 TraesCS7B01G191000 chr6D 88.136 177 14 6 1 173 168805338 168805511 2.370000e-48 204.0
64 TraesCS7B01G191000 chr6D 85.470 117 17 0 926 1042 430248509 430248393 6.830000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G191000 chr7B 328783255 328788278 5023 True 9278.000000 9278 100.000000 1 5024 1 chr7B.!!$R1 5023
1 TraesCS7B01G191000 chr7B 328784184 328787614 3430 True 446.000000 446 96.310000 665 4095 2 chr7B.!!$R2 3430
2 TraesCS7B01G191000 chr7B 389095369 389101222 5853 False 385.333333 390 84.330000 927 1378 3 chr7B.!!$F1 451
3 TraesCS7B01G191000 chr3D 594534901 594537663 2762 False 1600.000000 2614 91.965500 1826 3995 2 chr3D.!!$F3 2169
4 TraesCS7B01G191000 chr3D 594525559 594526763 1204 False 498.500000 793 88.564000 661 1840 2 chr3D.!!$F2 1179
5 TraesCS7B01G191000 chr4B 144092591 144096196 3605 False 720.250000 1836 91.188250 663 4008 4 chr4B.!!$F2 3345
6 TraesCS7B01G191000 chr4B 295963431 295963939 508 True 481.000000 481 83.890000 3040 3543 1 chr4B.!!$R1 503
7 TraesCS7B01G191000 chr2B 352927525 352929138 1613 False 678.466667 1190 93.135667 10 5024 3 chr2B.!!$F2 5014
8 TraesCS7B01G191000 chr5D 152772967 152776619 3652 True 436.750000 593 86.185250 664 4095 4 chr5D.!!$R3 3431
9 TraesCS7B01G191000 chr4D 352452638 352453333 695 False 406.500000 449 85.042000 665 4092 2 chr4D.!!$F2 3427
10 TraesCS7B01G191000 chr4A 610006163 610010630 4467 True 341.500000 344 84.626500 1255 1602 2 chr4A.!!$R5 347
11 TraesCS7B01G191000 chr3B 432598361 432602525 4164 False 244.500000 261 89.009500 750 966 2 chr3B.!!$F1 216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 873 0.032017 TTCTCCTACCTCTGCTCCCC 60.032 60.0 0.0 0.0 0.00 4.81 F
1415 1552 0.035915 GTTGACCTCCAGGAAGCCTC 60.036 60.0 0.0 0.0 38.94 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2408 0.031994 CCAACGAAACCAAGCAAGGG 59.968 55.0 0.0 0.0 0.00 3.95 R
4159 18710 1.069378 GTGGTGACGGAATCGACGAC 61.069 60.0 0.0 0.0 40.11 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 9.971744 GTTGGATATGTTTCAAATGTTATTTGC 57.028 29.630 8.92 0.00 0.00 3.68
82 84 9.716531 TTGGATATGTTTCAAATGTTATTTGCA 57.283 25.926 8.92 3.42 0.00 4.08
95 97 7.816945 ATGTTATTTGCATTTTTCTTCGGAG 57.183 32.000 0.00 0.00 0.00 4.63
98 100 7.168972 TGTTATTTGCATTTTTCTTCGGAGTTG 59.831 33.333 0.00 0.00 0.00 3.16
100 102 5.452078 TTGCATTTTTCTTCGGAGTTGAT 57.548 34.783 0.00 0.00 0.00 2.57
102 104 6.567687 TGCATTTTTCTTCGGAGTTGATAA 57.432 33.333 0.00 0.00 0.00 1.75
103 105 7.156876 TGCATTTTTCTTCGGAGTTGATAAT 57.843 32.000 0.00 0.00 0.00 1.28
116 118 7.444183 TCGGAGTTGATAATTATTGAATGGGAC 59.556 37.037 0.00 0.00 0.00 4.46
191 194 8.062065 ACAAGTATTTTGGACTGAAAAAGTGA 57.938 30.769 0.00 0.00 40.07 3.41
197 200 7.873719 TTTTGGACTGAAAAAGTGATCACTA 57.126 32.000 28.10 11.69 41.58 2.74
202 205 8.912988 TGGACTGAAAAAGTGATCACTATTTTT 58.087 29.630 26.95 26.95 41.58 1.94
203 206 9.399403 GGACTGAAAAAGTGATCACTATTTTTC 57.601 33.333 34.12 34.12 42.60 2.29
358 361 1.134670 ACTGCCCACTCGCTATCTTTC 60.135 52.381 0.00 0.00 0.00 2.62
391 394 3.289062 TGCGCACAAGCAGCACAT 61.289 55.556 5.66 0.00 42.92 3.21
418 421 1.305549 CCCAGCCCAAGAAGCCAAT 60.306 57.895 0.00 0.00 0.00 3.16
477 480 2.677524 GATGCAGGCCCACTTGCA 60.678 61.111 18.58 18.58 37.53 4.08
488 491 1.003580 CCCACTTGCAAGCCTCTCTTA 59.996 52.381 26.27 0.00 32.74 2.10
506 509 2.297698 TACCTCCTCTGTTTGACCGA 57.702 50.000 0.00 0.00 0.00 4.69
509 512 1.276421 CCTCCTCTGTTTGACCGACAT 59.724 52.381 0.00 0.00 0.00 3.06
511 514 0.798776 CCTCTGTTTGACCGACATGC 59.201 55.000 0.00 0.00 0.00 4.06
536 539 2.853914 GCACGCGTCTTCAACCTC 59.146 61.111 9.86 0.00 0.00 3.85
547 550 0.391597 TTCAACCTCCGCTCGAACTT 59.608 50.000 0.00 0.00 0.00 2.66
567 571 0.038526 CCTTCCTGTACGACAACGCT 60.039 55.000 0.00 0.00 43.96 5.07
585 589 4.778143 GCCACGCCCAGATCGGTT 62.778 66.667 3.47 0.00 0.00 4.44
601 605 1.006825 GGTTTCCGGCGATTTTGTGC 61.007 55.000 9.30 0.00 0.00 4.57
661 684 0.767375 CCGATTCCCACATCCATCCT 59.233 55.000 0.00 0.00 0.00 3.24
731 754 2.825836 CTCATGGACTTGGCCCGC 60.826 66.667 0.00 0.00 0.00 6.13
757 780 0.966875 CCCCATTGCTGCAGCTACAA 60.967 55.000 36.61 24.29 42.66 2.41
771 794 4.093556 GCAGCTACAAGTACCAGATCAAAC 59.906 45.833 0.00 0.00 0.00 2.93
779 802 2.270352 ACCAGATCAAACGCAAGGAA 57.730 45.000 0.00 0.00 46.39 3.36
780 803 2.154462 ACCAGATCAAACGCAAGGAAG 58.846 47.619 0.00 0.00 46.39 3.46
787 810 3.135994 TCAAACGCAAGGAAGAAGGTAC 58.864 45.455 0.00 0.00 46.39 3.34
800 823 1.906574 GAAGGTACCCAGTGGATCACA 59.093 52.381 11.95 0.00 36.74 3.58
801 824 1.573108 AGGTACCCAGTGGATCACAG 58.427 55.000 11.95 0.00 36.74 3.66
805 828 0.541998 ACCCAGTGGATCACAGACGA 60.542 55.000 11.95 0.00 36.74 4.20
806 829 0.608130 CCCAGTGGATCACAGACGAA 59.392 55.000 11.95 0.00 36.74 3.85
807 830 1.673033 CCCAGTGGATCACAGACGAAC 60.673 57.143 11.95 0.00 36.74 3.95
808 831 1.673033 CCAGTGGATCACAGACGAACC 60.673 57.143 1.68 0.00 36.74 3.62
827 850 3.787001 GGCAGCGGCTACCTTCCT 61.787 66.667 12.13 0.00 40.87 3.36
828 851 2.202946 GCAGCGGCTACCTTCCTC 60.203 66.667 0.26 0.00 36.96 3.71
835 858 1.679153 CGGCTACCTTCCTCTCTTCTC 59.321 57.143 0.00 0.00 0.00 2.87
836 859 2.036387 GGCTACCTTCCTCTCTTCTCC 58.964 57.143 0.00 0.00 0.00 3.71
837 860 2.358826 GGCTACCTTCCTCTCTTCTCCT 60.359 54.545 0.00 0.00 0.00 3.69
838 861 3.117436 GGCTACCTTCCTCTCTTCTCCTA 60.117 52.174 0.00 0.00 0.00 2.94
840 863 3.391799 ACCTTCCTCTCTTCTCCTACC 57.608 52.381 0.00 0.00 0.00 3.18
842 865 3.053170 ACCTTCCTCTCTTCTCCTACCTC 60.053 52.174 0.00 0.00 0.00 3.85
843 866 3.204382 CCTTCCTCTCTTCTCCTACCTCT 59.796 52.174 0.00 0.00 0.00 3.69
844 867 3.943671 TCCTCTCTTCTCCTACCTCTG 57.056 52.381 0.00 0.00 0.00 3.35
849 872 1.063567 TCTTCTCCTACCTCTGCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
850 873 0.032017 TTCTCCTACCTCTGCTCCCC 60.032 60.000 0.00 0.00 0.00 4.81
851 874 1.221909 TCTCCTACCTCTGCTCCCCA 61.222 60.000 0.00 0.00 0.00 4.96
852 875 0.758685 CTCCTACCTCTGCTCCCCAG 60.759 65.000 0.00 0.00 43.17 4.45
853 876 1.002274 CCTACCTCTGCTCCCCAGT 59.998 63.158 0.00 0.00 42.38 4.00
855 878 0.827368 CTACCTCTGCTCCCCAGTTC 59.173 60.000 0.00 0.00 42.38 3.01
856 879 0.116342 TACCTCTGCTCCCCAGTTCA 59.884 55.000 0.00 0.00 42.38 3.18
857 880 0.548682 ACCTCTGCTCCCCAGTTCAT 60.549 55.000 0.00 0.00 42.38 2.57
860 883 0.907486 TCTGCTCCCCAGTTCATCTG 59.093 55.000 0.00 0.00 42.38 2.90
863 886 2.237143 CTGCTCCCCAGTTCATCTGTAA 59.763 50.000 0.00 0.00 42.19 2.41
865 888 2.237392 GCTCCCCAGTTCATCTGTAACT 59.763 50.000 0.00 0.00 42.19 2.24
866 889 3.680196 GCTCCCCAGTTCATCTGTAACTC 60.680 52.174 0.00 0.00 42.19 3.01
867 890 3.515502 CTCCCCAGTTCATCTGTAACTCA 59.484 47.826 0.00 0.00 42.19 3.41
869 892 4.536090 TCCCCAGTTCATCTGTAACTCAAT 59.464 41.667 0.00 0.00 42.19 2.57
870 893 5.014123 TCCCCAGTTCATCTGTAACTCAATT 59.986 40.000 0.00 0.00 42.19 2.32
871 894 5.355350 CCCCAGTTCATCTGTAACTCAATTC 59.645 44.000 0.00 0.00 42.19 2.17
873 896 6.656693 CCCAGTTCATCTGTAACTCAATTCTT 59.343 38.462 0.00 0.00 42.19 2.52
877 935 9.950496 AGTTCATCTGTAACTCAATTCTTGTAT 57.050 29.630 0.00 0.00 31.56 2.29
885 943 8.251026 TGTAACTCAATTCTTGTATCAGATCGT 58.749 33.333 0.00 0.00 0.00 3.73
889 947 6.867550 TCAATTCTTGTATCAGATCGTGAGT 58.132 36.000 0.00 0.00 39.07 3.41
892 950 4.986622 TCTTGTATCAGATCGTGAGTGTG 58.013 43.478 0.00 0.00 39.07 3.82
894 952 4.096732 TGTATCAGATCGTGAGTGTGTG 57.903 45.455 0.00 0.00 39.07 3.82
895 953 3.756434 TGTATCAGATCGTGAGTGTGTGA 59.244 43.478 0.00 0.00 39.07 3.58
898 956 2.623416 TCAGATCGTGAGTGTGTGAACT 59.377 45.455 0.00 0.00 0.00 3.01
900 958 4.459337 TCAGATCGTGAGTGTGTGAACTAT 59.541 41.667 0.00 0.00 0.00 2.12
901 959 5.646360 TCAGATCGTGAGTGTGTGAACTATA 59.354 40.000 0.00 0.00 0.00 1.31
903 961 6.975197 CAGATCGTGAGTGTGTGAACTATAAT 59.025 38.462 0.00 0.00 0.00 1.28
906 964 7.619964 TCGTGAGTGTGTGAACTATAATCTA 57.380 36.000 0.00 0.00 0.00 1.98
907 965 7.694886 TCGTGAGTGTGTGAACTATAATCTAG 58.305 38.462 0.00 0.00 0.00 2.43
908 966 7.336176 TCGTGAGTGTGTGAACTATAATCTAGT 59.664 37.037 0.00 0.00 0.00 2.57
909 967 7.429630 CGTGAGTGTGTGAACTATAATCTAGTG 59.570 40.741 0.00 0.00 0.00 2.74
910 968 7.702772 GTGAGTGTGTGAACTATAATCTAGTGG 59.297 40.741 0.00 0.00 0.00 4.00
911 969 7.614192 TGAGTGTGTGAACTATAATCTAGTGGA 59.386 37.037 0.00 0.00 0.00 4.02
912 970 8.001881 AGTGTGTGAACTATAATCTAGTGGAG 57.998 38.462 0.00 0.00 0.00 3.86
913 971 7.834681 AGTGTGTGAACTATAATCTAGTGGAGA 59.165 37.037 0.00 0.00 39.01 3.71
915 973 9.862149 TGTGTGAACTATAATCTAGTGGAGATA 57.138 33.333 0.00 0.00 44.68 1.98
925 983 9.796180 ATAATCTAGTGGAGATATATCCCGTAC 57.204 37.037 13.81 5.66 44.68 3.67
965 1023 1.679898 CAGACACCACTCCTTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
972 1031 1.376037 CACTCCTTCCCCTGCGTTC 60.376 63.158 0.00 0.00 0.00 3.95
986 1045 2.087009 CGTTCCGTCAAGCTCGTCC 61.087 63.158 0.00 0.00 0.00 4.79
1029 1088 1.957177 TGGATGCAGGAGTATCTCGAC 59.043 52.381 0.00 0.00 37.09 4.20
1035 1094 2.231529 CAGGAGTATCTCGACCGGATT 58.768 52.381 9.46 0.00 33.73 3.01
1059 1118 1.878522 CATGCTCGACGCCTACACC 60.879 63.158 4.73 0.00 38.05 4.16
1165 1272 4.027884 TCGTCCACGATCCACCAT 57.972 55.556 0.00 0.00 44.22 3.55
1173 1280 4.779475 GATCCACCATCGCCGATT 57.221 55.556 0.00 0.00 0.00 3.34
1174 1281 2.533318 GATCCACCATCGCCGATTC 58.467 57.895 0.00 0.00 0.00 2.52
1176 1283 1.410850 ATCCACCATCGCCGATTCCT 61.411 55.000 0.00 0.00 0.00 3.36
1177 1284 1.153168 CCACCATCGCCGATTCCTT 60.153 57.895 0.00 0.00 0.00 3.36
1182 1289 1.592669 ATCGCCGATTCCTTCGCTG 60.593 57.895 0.00 0.00 46.71 5.18
1187 1294 0.390860 CCGATTCCTTCGCTGGAGAT 59.609 55.000 0.00 0.00 46.71 2.75
1203 1310 1.003331 GAGATCACTACTGAGGCGTCG 60.003 57.143 1.39 0.00 0.00 5.12
1245 1352 2.863484 TCCACCACCAAGGCCCAT 60.863 61.111 0.00 0.00 43.14 4.00
1246 1353 1.542628 TCCACCACCAAGGCCCATA 60.543 57.895 0.00 0.00 43.14 2.74
1251 1358 0.923358 CCACCAAGGCCCATAAGGTA 59.077 55.000 0.00 0.00 38.26 3.08
1262 1369 3.318313 CCCATAAGGTACCAGAGGTCAT 58.682 50.000 15.94 0.00 37.09 3.06
1320 1427 0.677288 TGACCTGTTCGACGGATTGT 59.323 50.000 0.00 0.00 0.00 2.71
1375 1482 2.678580 TCCGAGATGTCGCCACCA 60.679 61.111 6.76 0.00 45.41 4.17
1376 1483 2.509336 CCGAGATGTCGCCACCAC 60.509 66.667 6.76 0.00 45.41 4.16
1390 1527 2.272146 CCACCATCTTCCCCGTGG 59.728 66.667 0.00 0.00 39.85 4.94
1391 1528 3.399046 CACCATCTTCCCCGTGGA 58.601 61.111 0.00 0.00 39.54 4.02
1408 1545 2.743718 ACGCAGTTGACCTCCAGG 59.256 61.111 0.00 0.00 37.78 4.45
1410 1547 1.371183 CGCAGTTGACCTCCAGGAA 59.629 57.895 0.00 0.00 38.94 3.36
1415 1552 0.035915 GTTGACCTCCAGGAAGCCTC 60.036 60.000 0.00 0.00 38.94 4.70
1426 1563 2.847234 AAGCCTCCGACACCACCA 60.847 61.111 0.00 0.00 0.00 4.17
1431 1568 1.079127 CTCCGACACCACCATCCAC 60.079 63.158 0.00 0.00 0.00 4.02
1432 1569 1.826340 CTCCGACACCACCATCCACA 61.826 60.000 0.00 0.00 0.00 4.17
1440 1577 1.378882 CCACCATCCACATCGCCAAG 61.379 60.000 0.00 0.00 0.00 3.61
1444 1581 1.077501 ATCCACATCGCCAAGGGTG 60.078 57.895 0.00 0.00 33.99 4.61
1446 1583 1.195442 TCCACATCGCCAAGGGTGTA 61.195 55.000 0.00 0.00 34.40 2.90
1480 1716 2.601666 ACGCCACTCCAGAGCTCA 60.602 61.111 17.77 0.00 0.00 4.26
1489 1725 0.906756 TCCAGAGCTCACTTCCCTGG 60.907 60.000 17.77 12.85 44.23 4.45
1496 1732 2.046892 CACTTCCCTGGAGGTGCG 60.047 66.667 14.52 0.00 43.34 5.34
1535 1771 0.949105 GAGGTTGTTGCCATCGACGT 60.949 55.000 0.00 0.00 0.00 4.34
1536 1772 0.949105 AGGTTGTTGCCATCGACGTC 60.949 55.000 5.18 5.18 0.00 4.34
1537 1773 1.495951 GTTGTTGCCATCGACGTCC 59.504 57.895 10.58 0.00 0.00 4.79
1592 1828 1.228245 TGTGGCCCAGCTTCAACTC 60.228 57.895 0.00 0.00 0.00 3.01
1593 1829 1.073897 GTGGCCCAGCTTCAACTCT 59.926 57.895 0.00 0.00 0.00 3.24
1602 1838 0.036022 GCTTCAACTCTGGCACCTCT 59.964 55.000 0.00 0.00 0.00 3.69
1603 1839 1.805869 CTTCAACTCTGGCACCTCTG 58.194 55.000 0.00 0.00 0.00 3.35
1604 1840 1.345741 CTTCAACTCTGGCACCTCTGA 59.654 52.381 0.00 0.00 0.00 3.27
1605 1841 1.423584 TCAACTCTGGCACCTCTGAA 58.576 50.000 0.00 0.00 0.00 3.02
1606 1842 1.980765 TCAACTCTGGCACCTCTGAAT 59.019 47.619 0.00 0.00 0.00 2.57
1607 1843 2.027745 TCAACTCTGGCACCTCTGAATC 60.028 50.000 0.00 0.00 0.00 2.52
1609 1845 2.264455 ACTCTGGCACCTCTGAATCTT 58.736 47.619 0.00 0.00 0.00 2.40
1610 1846 2.235898 ACTCTGGCACCTCTGAATCTTC 59.764 50.000 0.00 0.00 0.00 2.87
1611 1847 2.235650 CTCTGGCACCTCTGAATCTTCA 59.764 50.000 0.00 0.00 35.57 3.02
1612 1848 2.842496 TCTGGCACCTCTGAATCTTCAT 59.158 45.455 0.00 0.00 36.46 2.57
1613 1849 3.265221 TCTGGCACCTCTGAATCTTCATT 59.735 43.478 0.00 0.00 36.46 2.57
1614 1850 3.349927 TGGCACCTCTGAATCTTCATTG 58.650 45.455 0.00 0.00 36.46 2.82
1615 1851 2.098770 GGCACCTCTGAATCTTCATTGC 59.901 50.000 0.00 1.40 36.46 3.56
1616 1852 2.098770 GCACCTCTGAATCTTCATTGCC 59.901 50.000 0.00 0.00 36.46 4.52
1617 1853 3.349927 CACCTCTGAATCTTCATTGCCA 58.650 45.455 0.00 0.00 36.46 4.92
1618 1854 3.952323 CACCTCTGAATCTTCATTGCCAT 59.048 43.478 0.00 0.00 36.46 4.40
1619 1855 4.036498 CACCTCTGAATCTTCATTGCCATC 59.964 45.833 0.00 0.00 36.46 3.51
1620 1856 4.079901 ACCTCTGAATCTTCATTGCCATCT 60.080 41.667 0.00 0.00 36.46 2.90
1621 1857 5.131642 ACCTCTGAATCTTCATTGCCATCTA 59.868 40.000 0.00 0.00 36.46 1.98
1622 1858 5.469421 CCTCTGAATCTTCATTGCCATCTAC 59.531 44.000 0.00 0.00 36.46 2.59
1623 1859 5.993055 TCTGAATCTTCATTGCCATCTACA 58.007 37.500 0.00 0.00 36.46 2.74
1624 1860 5.819379 TCTGAATCTTCATTGCCATCTACAC 59.181 40.000 0.00 0.00 36.46 2.90
1625 1861 5.499313 TGAATCTTCATTGCCATCTACACA 58.501 37.500 0.00 0.00 31.01 3.72
1626 1862 5.355071 TGAATCTTCATTGCCATCTACACAC 59.645 40.000 0.00 0.00 31.01 3.82
1627 1863 4.284829 TCTTCATTGCCATCTACACACA 57.715 40.909 0.00 0.00 0.00 3.72
1628 1864 4.650734 TCTTCATTGCCATCTACACACAA 58.349 39.130 0.00 0.00 0.00 3.33
1629 1865 4.696877 TCTTCATTGCCATCTACACACAAG 59.303 41.667 0.00 0.00 0.00 3.16
1630 1866 3.346315 TCATTGCCATCTACACACAAGG 58.654 45.455 0.00 0.00 0.00 3.61
1631 1867 3.008923 TCATTGCCATCTACACACAAGGA 59.991 43.478 0.00 0.00 0.00 3.36
1632 1868 3.719268 TTGCCATCTACACACAAGGAT 57.281 42.857 0.00 0.00 0.00 3.24
1633 1869 2.989909 TGCCATCTACACACAAGGATG 58.010 47.619 0.00 0.00 36.35 3.51
1634 1870 2.305635 TGCCATCTACACACAAGGATGT 59.694 45.455 0.00 0.00 41.61 3.06
1646 1882 3.614092 ACAAGGATGTGCAAGAGGTATG 58.386 45.455 0.00 0.00 38.69 2.39
1648 1884 2.481441 AGGATGTGCAAGAGGTATGGA 58.519 47.619 0.00 0.00 0.00 3.41
1649 1885 2.846206 AGGATGTGCAAGAGGTATGGAA 59.154 45.455 0.00 0.00 0.00 3.53
1650 1886 3.118112 AGGATGTGCAAGAGGTATGGAAG 60.118 47.826 0.00 0.00 0.00 3.46
1651 1887 2.113860 TGTGCAAGAGGTATGGAAGC 57.886 50.000 0.00 0.00 0.00 3.86
1652 1888 1.340017 TGTGCAAGAGGTATGGAAGCC 60.340 52.381 0.00 0.00 0.00 4.35
1653 1889 0.991146 TGCAAGAGGTATGGAAGCCA 59.009 50.000 0.00 0.00 38.19 4.75
1654 1890 1.354031 TGCAAGAGGTATGGAAGCCAA 59.646 47.619 0.00 0.00 36.95 4.52
1655 1891 2.025037 TGCAAGAGGTATGGAAGCCAAT 60.025 45.455 0.00 0.00 36.95 3.16
1656 1892 2.360165 GCAAGAGGTATGGAAGCCAATG 59.640 50.000 0.00 0.00 36.95 2.82
1658 1894 1.133668 AGAGGTATGGAAGCCAATGCC 60.134 52.381 0.00 0.00 36.95 4.40
1662 1898 0.106066 TATGGAAGCCAATGCCTGGG 60.106 55.000 4.24 0.00 46.54 4.45
1667 1903 4.282881 GCCAATGCCTGGGCTATT 57.717 55.556 13.05 8.02 46.54 1.73
1668 1904 2.519937 GCCAATGCCTGGGCTATTT 58.480 52.632 13.05 1.78 46.54 1.40
1669 1905 0.105408 GCCAATGCCTGGGCTATTTG 59.895 55.000 13.05 12.54 46.54 2.32
1670 1906 1.779221 CCAATGCCTGGGCTATTTGA 58.221 50.000 13.05 0.00 42.17 2.69
1671 1907 1.410153 CCAATGCCTGGGCTATTTGAC 59.590 52.381 13.05 0.00 42.17 3.18
1672 1908 2.101783 CAATGCCTGGGCTATTTGACA 58.898 47.619 13.05 0.00 42.51 3.58
1673 1909 2.496871 CAATGCCTGGGCTATTTGACAA 59.503 45.455 13.05 0.00 42.51 3.18
1674 1910 1.838112 TGCCTGGGCTATTTGACAAG 58.162 50.000 13.05 0.00 42.51 3.16
1675 1911 0.457443 GCCTGGGCTATTTGACAAGC 59.543 55.000 4.12 0.00 38.26 4.01
1682 1918 3.142404 GCTATTTGACAAGCCTGAAGC 57.858 47.619 0.00 0.00 44.25 3.86
1691 1927 4.641777 GCCTGAAGCTGTTGTTGC 57.358 55.556 0.00 0.00 38.99 4.17
1692 1928 2.036236 GCCTGAAGCTGTTGTTGCT 58.964 52.632 0.00 0.00 43.32 3.91
1693 1929 1.238439 GCCTGAAGCTGTTGTTGCTA 58.762 50.000 0.00 0.00 40.22 3.49
1694 1930 1.608590 GCCTGAAGCTGTTGTTGCTAA 59.391 47.619 0.00 0.00 40.22 3.09
1695 1931 2.229784 GCCTGAAGCTGTTGTTGCTAAT 59.770 45.455 0.00 0.00 40.22 1.73
1696 1932 3.829948 CCTGAAGCTGTTGTTGCTAATG 58.170 45.455 0.00 0.00 40.22 1.90
1697 1933 3.254166 CCTGAAGCTGTTGTTGCTAATGT 59.746 43.478 0.00 0.00 40.22 2.71
1698 1934 4.224433 CTGAAGCTGTTGTTGCTAATGTG 58.776 43.478 0.00 0.00 40.22 3.21
1699 1935 3.882288 TGAAGCTGTTGTTGCTAATGTGA 59.118 39.130 0.00 0.00 40.22 3.58
1700 1936 4.337836 TGAAGCTGTTGTTGCTAATGTGAA 59.662 37.500 0.00 0.00 40.22 3.18
1701 1937 4.494350 AGCTGTTGTTGCTAATGTGAAG 57.506 40.909 0.00 0.00 39.21 3.02
1702 1938 3.254166 AGCTGTTGTTGCTAATGTGAAGG 59.746 43.478 0.00 0.00 39.21 3.46
1703 1939 3.253188 GCTGTTGTTGCTAATGTGAAGGA 59.747 43.478 0.00 0.00 0.00 3.36
1704 1940 4.614535 GCTGTTGTTGCTAATGTGAAGGAG 60.615 45.833 0.00 0.00 0.00 3.69
1705 1941 3.253188 TGTTGTTGCTAATGTGAAGGAGC 59.747 43.478 0.00 0.00 35.43 4.70
1706 1942 3.138884 TGTTGCTAATGTGAAGGAGCA 57.861 42.857 0.00 0.00 42.98 4.26
1707 1943 2.813754 TGTTGCTAATGTGAAGGAGCAC 59.186 45.455 0.00 0.00 44.28 4.40
1714 1950 2.189594 TGTGAAGGAGCACAAGGATG 57.810 50.000 0.00 0.00 45.08 3.51
1715 1951 1.699083 TGTGAAGGAGCACAAGGATGA 59.301 47.619 0.00 0.00 45.08 2.92
1716 1952 2.306805 TGTGAAGGAGCACAAGGATGAT 59.693 45.455 0.00 0.00 45.08 2.45
1717 1953 2.681848 GTGAAGGAGCACAAGGATGATG 59.318 50.000 0.00 0.00 38.63 3.07
1718 1954 1.674962 GAAGGAGCACAAGGATGATGC 59.325 52.381 0.00 0.00 39.74 3.91
1719 1955 0.622136 AGGAGCACAAGGATGATGCA 59.378 50.000 0.00 0.00 41.97 3.96
1720 1956 1.005097 AGGAGCACAAGGATGATGCAA 59.995 47.619 0.00 0.00 41.97 4.08
1721 1957 1.820519 GGAGCACAAGGATGATGCAAA 59.179 47.619 0.00 0.00 41.97 3.68
1722 1958 2.159282 GGAGCACAAGGATGATGCAAAG 60.159 50.000 0.00 0.00 41.97 2.77
1723 1959 1.203994 AGCACAAGGATGATGCAAAGC 59.796 47.619 0.00 0.00 41.97 3.51
1724 1960 1.203994 GCACAAGGATGATGCAAAGCT 59.796 47.619 0.00 0.00 39.23 3.74
1725 1961 2.876091 CACAAGGATGATGCAAAGCTG 58.124 47.619 0.00 0.00 0.00 4.24
1726 1962 2.230508 CACAAGGATGATGCAAAGCTGT 59.769 45.455 0.00 0.00 0.00 4.40
1727 1963 2.895404 ACAAGGATGATGCAAAGCTGTT 59.105 40.909 0.00 0.00 0.00 3.16
1728 1964 3.250744 CAAGGATGATGCAAAGCTGTTG 58.749 45.455 0.00 0.00 0.00 3.33
1729 1965 1.822990 AGGATGATGCAAAGCTGTTGG 59.177 47.619 0.00 0.00 0.00 3.77
1730 1966 1.547372 GGATGATGCAAAGCTGTTGGT 59.453 47.619 0.00 0.00 0.00 3.67
1731 1967 2.754552 GGATGATGCAAAGCTGTTGGTA 59.245 45.455 0.00 0.00 0.00 3.25
1732 1968 3.193267 GGATGATGCAAAGCTGTTGGTAA 59.807 43.478 0.00 0.00 0.00 2.85
1733 1969 4.142093 GGATGATGCAAAGCTGTTGGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1734 1970 4.870123 TGATGCAAAGCTGTTGGTAATT 57.130 36.364 0.00 0.00 0.00 1.40
1735 1971 5.973899 TGATGCAAAGCTGTTGGTAATTA 57.026 34.783 0.00 0.00 0.00 1.40
1736 1972 5.708948 TGATGCAAAGCTGTTGGTAATTAC 58.291 37.500 7.09 7.09 0.00 1.89
1737 1973 5.242615 TGATGCAAAGCTGTTGGTAATTACA 59.757 36.000 17.16 0.00 0.00 2.41
1738 1974 4.865776 TGCAAAGCTGTTGGTAATTACAC 58.134 39.130 17.16 8.32 0.00 2.90
1739 1975 4.582656 TGCAAAGCTGTTGGTAATTACACT 59.417 37.500 17.16 2.11 0.00 3.55
1750 1986 7.174253 TGTTGGTAATTACACTCTTCATGAACC 59.826 37.037 17.16 0.80 0.00 3.62
1751 1987 6.177610 TGGTAATTACACTCTTCATGAACCC 58.822 40.000 17.16 0.00 0.00 4.11
1753 1989 6.828785 GGTAATTACACTCTTCATGAACCCAT 59.171 38.462 17.16 0.00 0.00 4.00
1754 1990 7.012421 GGTAATTACACTCTTCATGAACCCATC 59.988 40.741 17.16 0.00 0.00 3.51
1756 1992 4.371624 ACACTCTTCATGAACCCATCAA 57.628 40.909 3.38 0.00 42.54 2.57
1757 1993 4.074970 ACACTCTTCATGAACCCATCAAC 58.925 43.478 3.38 0.00 42.54 3.18
1763 2386 2.916269 TCATGAACCCATCAACCTGGTA 59.084 45.455 0.00 0.00 42.54 3.25
1767 2390 3.332187 TGAACCCATCAACCTGGTATGAA 59.668 43.478 10.51 0.00 34.30 2.57
1770 2393 3.269381 ACCCATCAACCTGGTATGAACAT 59.731 43.478 10.51 0.00 34.23 2.71
1775 2398 6.071447 CCATCAACCTGGTATGAACATTTCAA 60.071 38.462 10.51 0.00 43.95 2.69
1776 2399 7.364056 CCATCAACCTGGTATGAACATTTCAAT 60.364 37.037 10.51 0.00 43.95 2.57
1778 2401 8.050778 TCAACCTGGTATGAACATTTCAATAC 57.949 34.615 0.00 0.00 43.95 1.89
1780 2403 5.891551 ACCTGGTATGAACATTTCAATACCC 59.108 40.000 0.00 7.05 43.95 3.69
1783 2406 5.820423 TGGTATGAACATTTCAATACCCGAG 59.180 40.000 16.52 0.00 43.95 4.63
1784 2407 6.053005 GGTATGAACATTTCAATACCCGAGA 58.947 40.000 12.14 0.00 43.95 4.04
1785 2408 6.018180 GGTATGAACATTTCAATACCCGAGAC 60.018 42.308 12.14 0.00 43.95 3.36
1788 2411 2.844348 ACATTTCAATACCCGAGACCCT 59.156 45.455 0.00 0.00 0.00 4.34
1789 2412 3.265995 ACATTTCAATACCCGAGACCCTT 59.734 43.478 0.00 0.00 0.00 3.95
1790 2413 3.343941 TTTCAATACCCGAGACCCTTG 57.656 47.619 0.00 0.00 0.00 3.61
1791 2414 0.539986 TCAATACCCGAGACCCTTGC 59.460 55.000 0.00 0.00 0.00 4.01
1792 2415 0.541863 CAATACCCGAGACCCTTGCT 59.458 55.000 0.00 0.00 0.00 3.91
1794 2417 0.541863 ATACCCGAGACCCTTGCTTG 59.458 55.000 0.00 0.00 0.00 4.01
1795 2418 1.550130 TACCCGAGACCCTTGCTTGG 61.550 60.000 0.00 0.00 36.79 3.61
1796 2419 2.750350 CCGAGACCCTTGCTTGGT 59.250 61.111 0.00 0.00 39.32 3.67
1797 2420 1.073199 CCGAGACCCTTGCTTGGTT 59.927 57.895 0.00 0.00 35.85 3.67
1798 2421 0.537371 CCGAGACCCTTGCTTGGTTT 60.537 55.000 0.00 0.00 35.85 3.27
1799 2422 0.875059 CGAGACCCTTGCTTGGTTTC 59.125 55.000 0.00 0.00 35.85 2.78
1801 2424 0.182775 AGACCCTTGCTTGGTTTCGT 59.817 50.000 0.00 0.00 35.85 3.85
1811 3869 0.468214 TTGGTTTCGTTGGATGCCCA 60.468 50.000 0.00 0.00 41.64 5.36
1813 3871 0.893727 GGTTTCGTTGGATGCCCAGT 60.894 55.000 0.00 0.00 44.60 4.00
1815 3873 0.958091 TTTCGTTGGATGCCCAGTTG 59.042 50.000 0.00 0.00 44.60 3.16
1818 3876 0.322098 CGTTGGATGCCCAGTTGGTA 60.322 55.000 0.00 0.00 44.60 3.25
1819 3877 1.681780 CGTTGGATGCCCAGTTGGTAT 60.682 52.381 0.00 0.00 44.60 2.73
1820 3878 2.456577 GTTGGATGCCCAGTTGGTATT 58.543 47.619 0.00 0.00 44.60 1.89
1821 3879 2.831526 GTTGGATGCCCAGTTGGTATTT 59.168 45.455 0.00 0.00 44.60 1.40
1822 3880 2.455557 TGGATGCCCAGTTGGTATTTG 58.544 47.619 0.00 0.00 39.90 2.32
1823 3881 1.136891 GGATGCCCAGTTGGTATTTGC 59.863 52.381 0.00 0.00 39.90 3.68
1825 3883 1.247419 TGCCCAGTTGGTATTTGCGG 61.247 55.000 0.00 0.00 36.04 5.69
1826 3884 0.963355 GCCCAGTTGGTATTTGCGGA 60.963 55.000 0.00 0.00 36.04 5.54
4205 18756 3.103742 GTGATGTTCTCCTCCCTTCTCT 58.896 50.000 0.00 0.00 0.00 3.10
4206 18757 4.282496 GTGATGTTCTCCTCCCTTCTCTA 58.718 47.826 0.00 0.00 0.00 2.43
4207 18758 4.898861 GTGATGTTCTCCTCCCTTCTCTAT 59.101 45.833 0.00 0.00 0.00 1.98
4208 18759 6.071984 GTGATGTTCTCCTCCCTTCTCTATA 58.928 44.000 0.00 0.00 0.00 1.31
4220 18774 5.836898 TCCCTTCTCTATATCGTTGCCTTAA 59.163 40.000 0.00 0.00 0.00 1.85
4223 18777 6.864165 CCTTCTCTATATCGTTGCCTTAACTC 59.136 42.308 0.00 0.00 37.13 3.01
4224 18778 6.954487 TCTCTATATCGTTGCCTTAACTCA 57.046 37.500 0.00 0.00 37.13 3.41
4227 18781 2.109425 ATCGTTGCCTTAACTCACCC 57.891 50.000 0.00 0.00 37.13 4.61
4228 18782 1.053424 TCGTTGCCTTAACTCACCCT 58.947 50.000 0.00 0.00 37.13 4.34
4249 18803 5.478407 CCTTCTCTCTGAACTCTCTTTTCC 58.522 45.833 0.00 0.00 0.00 3.13
4264 18818 3.330701 TCTTTTCCCTCCAAGCAGTACAT 59.669 43.478 0.00 0.00 0.00 2.29
4273 18827 2.341257 CAAGCAGTACATGAGCGAACT 58.659 47.619 0.00 0.00 0.00 3.01
4288 18842 2.508586 GAACTCACTGACCTCCGCCC 62.509 65.000 0.00 0.00 0.00 6.13
4300 18854 2.030562 CCGCCCGAACAGAACACT 59.969 61.111 0.00 0.00 0.00 3.55
4354 18908 2.536393 GCGAGAGTAAGAAATCTTCGGC 59.464 50.000 0.00 0.00 37.40 5.54
4365 18919 3.398318 AATCTTCGGCCCCCTATTTTT 57.602 42.857 0.00 0.00 0.00 1.94
4366 18920 2.430248 TCTTCGGCCCCCTATTTTTC 57.570 50.000 0.00 0.00 0.00 2.29
4389 18943 1.606601 TGGACCTCCACCACTCTCG 60.607 63.158 0.00 0.00 42.01 4.04
4393 18947 2.716017 CCTCCACCACTCTCGGCTC 61.716 68.421 0.00 0.00 0.00 4.70
4414 18968 0.034337 TTCCTGACCGAGTTTTCCCG 59.966 55.000 0.00 0.00 0.00 5.14
4443 18997 2.254471 TCGGATTCGAGCTATCCCG 58.746 57.895 8.18 7.17 40.88 5.14
4460 19014 2.877691 GCCCACACCAAAGATCGC 59.122 61.111 0.00 0.00 0.00 4.58
4485 19039 1.875813 CGCCGTTGCTCTAGCTGAG 60.876 63.158 0.00 2.39 45.33 3.35
4494 19048 0.953727 CTCTAGCTGAGCAGAGCGAT 59.046 55.000 16.76 0.00 44.24 4.58
4508 19062 2.234908 AGAGCGATGCTACCTGAAACTT 59.765 45.455 0.00 0.00 39.88 2.66
4509 19063 2.605366 GAGCGATGCTACCTGAAACTTC 59.395 50.000 0.00 0.00 39.88 3.01
4515 19069 2.703536 TGCTACCTGAAACTTCCTGTCA 59.296 45.455 0.00 0.00 0.00 3.58
4529 19083 2.432628 GTCACCGCCTCCTGTTCG 60.433 66.667 0.00 0.00 0.00 3.95
4532 19086 3.692406 ACCGCCTCCTGTTCGTCC 61.692 66.667 0.00 0.00 0.00 4.79
4533 19087 3.382832 CCGCCTCCTGTTCGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
4574 19128 0.673985 CCACCAGAGAACTCACGACA 59.326 55.000 4.64 0.00 0.00 4.35
4583 19137 3.926616 AGAACTCACGACAAATACCCTG 58.073 45.455 0.00 0.00 0.00 4.45
4588 19142 3.162666 TCACGACAAATACCCTGAGTCT 58.837 45.455 0.00 0.00 0.00 3.24
4592 19146 3.056821 CGACAAATACCCTGAGTCTGTCA 60.057 47.826 5.93 0.00 0.00 3.58
4607 19161 2.896854 TCATGCCGCGCTTCATCC 60.897 61.111 5.56 0.00 0.00 3.51
4608 19162 2.898840 CATGCCGCGCTTCATCCT 60.899 61.111 5.56 0.00 0.00 3.24
4628 19182 1.480219 CGTGCTATTCCCGAAGTCGC 61.480 60.000 0.00 0.00 38.18 5.19
4639 19193 0.601057 CGAAGTCGCCCCCAATTTTT 59.399 50.000 0.00 0.00 0.00 1.94
4641 19195 0.973632 AAGTCGCCCCCAATTTTTCC 59.026 50.000 0.00 0.00 0.00 3.13
4642 19196 0.114364 AGTCGCCCCCAATTTTTCCT 59.886 50.000 0.00 0.00 0.00 3.36
4644 19198 0.613572 TCGCCCCCAATTTTTCCTCC 60.614 55.000 0.00 0.00 0.00 4.30
4645 19199 1.897423 GCCCCCAATTTTTCCTCCG 59.103 57.895 0.00 0.00 0.00 4.63
4646 19200 0.902984 GCCCCCAATTTTTCCTCCGT 60.903 55.000 0.00 0.00 0.00 4.69
4647 19201 0.894835 CCCCCAATTTTTCCTCCGTG 59.105 55.000 0.00 0.00 0.00 4.94
4667 19221 2.202892 GACGAGGGCACGGATTCC 60.203 66.667 8.04 0.00 37.61 3.01
4670 19224 1.889105 CGAGGGCACGGATTCCATG 60.889 63.158 3.09 0.00 0.00 3.66
4699 19253 4.194720 CCGAGCTCCCTTCGTCGG 62.195 72.222 8.47 0.00 45.48 4.79
4706 19260 1.134907 GCTCCCTTCGTCGGTTGATTA 60.135 52.381 0.00 0.00 0.00 1.75
4725 19279 7.012661 TGATTATGATGACTGTATGCATCCT 57.987 36.000 0.19 0.00 40.05 3.24
4731 19285 1.067669 GACTGTATGCATCCTCGAGCA 59.932 52.381 6.99 2.67 45.92 4.26
4734 19288 0.030773 GTATGCATCCTCGAGCACGA 59.969 55.000 6.99 6.00 44.49 4.35
4736 19290 1.670949 ATGCATCCTCGAGCACGACT 61.671 55.000 6.99 0.00 44.49 4.18
4738 19292 1.803289 CATCCTCGAGCACGACTGA 59.197 57.895 6.99 2.79 43.81 3.41
4743 19297 1.543614 CTCGAGCACGACTGATTCTG 58.456 55.000 0.88 0.00 43.81 3.02
4756 19329 1.202687 TGATTCTGATGACGCATCCCC 60.203 52.381 14.48 3.70 39.87 4.81
4763 19336 2.124695 GACGCATCCCCCTGAACC 60.125 66.667 0.00 0.00 0.00 3.62
4785 19358 4.919653 TGCCTCTCGCAGATTGAC 57.080 55.556 0.00 0.00 44.64 3.18
4788 19361 0.108424 GCCTCTCGCAGATTGACACT 60.108 55.000 0.00 0.00 37.47 3.55
4805 19378 1.517257 CTGGAGCAAGCTACCGACG 60.517 63.158 1.10 0.00 0.00 5.12
4809 19382 2.432628 GCAAGCTACCGACGCACT 60.433 61.111 0.00 0.00 0.00 4.40
4837 19410 0.606401 CATCGGAGTTTGGTGGCACT 60.606 55.000 18.45 0.00 0.00 4.40
4851 19424 2.865308 CACTACCGAGCGACGACA 59.135 61.111 0.00 0.00 45.77 4.35
4866 19439 1.837090 GACACCACCAACAGAGGGT 59.163 57.895 0.00 0.00 39.88 4.34
4877 19450 2.299297 CAACAGAGGGTACTTCCTTCGT 59.701 50.000 0.00 0.00 45.51 3.85
4879 19452 2.168496 CAGAGGGTACTTCCTTCGTCA 58.832 52.381 0.00 0.00 45.51 4.35
4902 19475 4.343323 CGCCACCATCACCACCCA 62.343 66.667 0.00 0.00 0.00 4.51
4917 19490 2.736995 CCACGTCGAACACCGCAT 60.737 61.111 0.00 0.00 38.37 4.73
4919 19492 1.733041 CACGTCGAACACCGCATCT 60.733 57.895 0.00 0.00 38.37 2.90
4964 19537 2.203728 ACCACCGGAGTAGTGCCA 60.204 61.111 9.46 0.00 33.75 4.92
4968 19541 3.379445 CCGGAGTAGTGCCACCGT 61.379 66.667 0.00 0.00 43.22 4.83
4972 19545 1.982938 GAGTAGTGCCACCGTCCCT 60.983 63.158 0.00 0.00 0.00 4.20
4980 19553 2.181021 CACCGTCCCTGCTCGTAC 59.819 66.667 0.00 0.00 0.00 3.67
4981 19554 3.066814 ACCGTCCCTGCTCGTACC 61.067 66.667 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 8.494347 TCCGAAGAAAAATGCAAATAACATTTG 58.506 29.630 7.16 7.16 44.76 2.32
76 78 5.841810 TCAACTCCGAAGAAAAATGCAAAT 58.158 33.333 0.00 0.00 0.00 2.32
77 79 5.255710 TCAACTCCGAAGAAAAATGCAAA 57.744 34.783 0.00 0.00 0.00 3.68
90 92 7.444183 GTCCCATTCAATAATTATCAACTCCGA 59.556 37.037 0.00 0.00 0.00 4.55
91 93 7.228507 TGTCCCATTCAATAATTATCAACTCCG 59.771 37.037 0.00 0.00 0.00 4.63
108 110 9.573133 CTTTGACACTTATAAAATGTCCCATTC 57.427 33.333 19.56 3.41 41.71 2.67
167 170 9.185192 GATCACTTTTTCAGTCCAAAATACTTG 57.815 33.333 0.00 0.00 30.92 3.16
311 314 1.277273 GCCGGGTAGAAAAGGTGTAGT 59.723 52.381 2.18 0.00 0.00 2.73
315 318 0.036306 ACTGCCGGGTAGAAAAGGTG 59.964 55.000 19.53 0.00 0.00 4.00
321 324 0.834687 AGTTGGACTGCCGGGTAGAA 60.835 55.000 19.53 0.00 36.79 2.10
388 391 4.118584 GCTGGGCCAAAAGGATGT 57.881 55.556 8.04 0.00 0.00 3.06
464 467 3.688159 GGCTTGCAAGTGGGCCTG 61.688 66.667 26.55 0.82 41.20 4.85
477 480 2.043801 ACAGAGGAGGTAAGAGAGGCTT 59.956 50.000 0.00 0.00 40.68 4.35
488 491 0.680061 GTCGGTCAAACAGAGGAGGT 59.320 55.000 0.00 0.00 0.00 3.85
536 539 0.737715 CAGGAAGGAAGTTCGAGCGG 60.738 60.000 0.00 0.00 35.80 5.52
547 550 0.038892 GCGTTGTCGTACAGGAAGGA 60.039 55.000 0.00 0.00 39.49 3.36
585 589 1.961791 TCGCACAAAATCGCCGGAA 60.962 52.632 5.05 0.00 0.00 4.30
594 598 2.188161 GGTTCGGGGTCGCACAAAA 61.188 57.895 0.00 0.00 34.35 2.44
626 649 1.226435 CGGACGAGAGGAAGAAGCG 60.226 63.158 0.00 0.00 0.00 4.68
708 731 1.746615 CCAAGTCCATGAGTGGCCG 60.747 63.158 0.00 0.00 45.63 6.13
713 736 2.671070 CGGGCCAAGTCCATGAGT 59.329 61.111 4.39 0.00 0.00 3.41
731 754 2.516930 CAGCAATGGGGTAGCGGG 60.517 66.667 0.00 0.00 0.00 6.13
744 767 0.684535 TGGTACTTGTAGCTGCAGCA 59.315 50.000 38.24 22.31 45.16 4.41
745 768 1.066858 TCTGGTACTTGTAGCTGCAGC 60.067 52.381 31.53 31.53 42.49 5.25
757 780 2.301870 TCCTTGCGTTTGATCTGGTACT 59.698 45.455 0.00 0.00 0.00 2.73
779 802 2.494627 TGTGATCCACTGGGTACCTTCT 60.495 50.000 12.72 0.00 40.27 2.85
780 803 1.906574 TGTGATCCACTGGGTACCTTC 59.093 52.381 12.72 0.00 40.27 3.46
787 810 0.608130 TTCGTCTGTGATCCACTGGG 59.392 55.000 0.00 0.00 35.11 4.45
813 836 0.324830 AAGAGAGGAAGGTAGCCGCT 60.325 55.000 0.00 0.00 38.31 5.52
820 843 2.930405 AGGTAGGAGAAGAGAGGAAGGT 59.070 50.000 0.00 0.00 0.00 3.50
825 848 2.091885 AGCAGAGGTAGGAGAAGAGAGG 60.092 54.545 0.00 0.00 0.00 3.69
827 850 2.092103 GGAGCAGAGGTAGGAGAAGAGA 60.092 54.545 0.00 0.00 0.00 3.10
828 851 2.306847 GGAGCAGAGGTAGGAGAAGAG 58.693 57.143 0.00 0.00 0.00 2.85
835 858 0.618968 AACTGGGGAGCAGAGGTAGG 60.619 60.000 0.00 0.00 0.00 3.18
836 859 0.827368 GAACTGGGGAGCAGAGGTAG 59.173 60.000 0.00 0.00 0.00 3.18
837 860 0.116342 TGAACTGGGGAGCAGAGGTA 59.884 55.000 0.00 0.00 0.00 3.08
838 861 0.548682 ATGAACTGGGGAGCAGAGGT 60.549 55.000 0.00 0.00 0.00 3.85
840 863 1.134461 CAGATGAACTGGGGAGCAGAG 60.134 57.143 0.00 0.00 42.39 3.35
842 865 3.473147 CAGATGAACTGGGGAGCAG 57.527 57.895 0.00 0.00 42.39 4.24
867 890 6.533012 CACACTCACGATCTGATACAAGAATT 59.467 38.462 0.00 0.00 0.00 2.17
869 892 5.048013 ACACACTCACGATCTGATACAAGAA 60.048 40.000 0.00 0.00 0.00 2.52
870 893 4.459337 ACACACTCACGATCTGATACAAGA 59.541 41.667 0.00 0.00 0.00 3.02
871 894 4.560427 CACACACTCACGATCTGATACAAG 59.440 45.833 0.00 0.00 0.00 3.16
873 896 3.756434 TCACACACTCACGATCTGATACA 59.244 43.478 0.00 0.00 0.00 2.29
877 935 2.623416 AGTTCACACACTCACGATCTGA 59.377 45.455 0.00 0.00 0.00 3.27
878 936 3.018598 AGTTCACACACTCACGATCTG 57.981 47.619 0.00 0.00 0.00 2.90
885 943 7.614192 TCCACTAGATTATAGTTCACACACTCA 59.386 37.037 0.00 0.00 0.00 3.41
889 947 8.768501 ATCTCCACTAGATTATAGTTCACACA 57.231 34.615 0.00 0.00 42.62 3.72
900 958 8.216423 GGTACGGGATATATCTCCACTAGATTA 58.784 40.741 12.42 0.00 42.62 1.75
901 959 7.061688 GGTACGGGATATATCTCCACTAGATT 58.938 42.308 12.42 0.00 42.62 2.40
903 961 5.730207 AGGTACGGGATATATCTCCACTAGA 59.270 44.000 12.42 0.00 37.01 2.43
906 964 4.949966 AGGTACGGGATATATCTCCACT 57.050 45.455 12.42 0.70 37.01 4.00
907 965 5.948162 TGTAAGGTACGGGATATATCTCCAC 59.052 44.000 12.42 7.85 37.01 4.02
908 966 6.143551 TGTAAGGTACGGGATATATCTCCA 57.856 41.667 12.42 0.00 37.01 3.86
909 967 7.013464 CAGATGTAAGGTACGGGATATATCTCC 59.987 44.444 12.42 10.58 34.31 3.71
910 968 7.013464 CCAGATGTAAGGTACGGGATATATCTC 59.987 44.444 12.42 7.63 27.78 2.75
911 969 6.834451 CCAGATGTAAGGTACGGGATATATCT 59.166 42.308 12.42 0.00 29.60 1.98
912 970 6.606395 ACCAGATGTAAGGTACGGGATATATC 59.394 42.308 3.96 3.96 36.07 1.63
913 971 6.500336 ACCAGATGTAAGGTACGGGATATAT 58.500 40.000 0.00 0.00 36.07 0.86
914 972 5.895807 ACCAGATGTAAGGTACGGGATATA 58.104 41.667 0.00 0.00 36.07 0.86
915 973 4.748701 ACCAGATGTAAGGTACGGGATAT 58.251 43.478 0.00 0.00 36.07 1.63
916 974 4.188937 ACCAGATGTAAGGTACGGGATA 57.811 45.455 0.00 0.00 36.07 2.59
917 975 3.042059 ACCAGATGTAAGGTACGGGAT 57.958 47.619 0.00 0.00 36.07 3.85
918 976 2.537633 ACCAGATGTAAGGTACGGGA 57.462 50.000 0.00 0.00 36.07 5.14
919 977 3.893200 TGATACCAGATGTAAGGTACGGG 59.107 47.826 0.00 0.00 42.74 5.28
920 978 4.825634 TCTGATACCAGATGTAAGGTACGG 59.174 45.833 0.00 0.00 44.01 4.02
950 1008 2.529744 GCAGGGGAAGGAGTGGTGT 61.530 63.158 0.00 0.00 0.00 4.16
972 1031 3.989698 ATGCGGACGAGCTTGACGG 62.990 63.158 19.21 13.60 38.13 4.79
1029 1088 2.514592 AGCATGGCGTCAATCCGG 60.515 61.111 0.00 0.00 0.00 5.14
1172 1279 1.561643 AGTGATCTCCAGCGAAGGAA 58.438 50.000 0.00 0.00 37.20 3.36
1173 1280 2.025155 GTAGTGATCTCCAGCGAAGGA 58.975 52.381 0.00 0.00 36.00 3.36
1174 1281 2.028130 AGTAGTGATCTCCAGCGAAGG 58.972 52.381 0.00 0.00 0.00 3.46
1176 1283 2.685388 CTCAGTAGTGATCTCCAGCGAA 59.315 50.000 0.00 0.00 30.18 4.70
1177 1284 2.293170 CTCAGTAGTGATCTCCAGCGA 58.707 52.381 0.00 0.00 30.18 4.93
1182 1289 1.335496 GACGCCTCAGTAGTGATCTCC 59.665 57.143 0.00 0.00 30.18 3.71
1187 1294 2.697761 GCCGACGCCTCAGTAGTGA 61.698 63.158 0.00 0.00 0.00 3.41
1217 1324 3.695606 TGGTGGAGCAGGAGACGC 61.696 66.667 0.00 0.00 0.00 5.19
1245 1352 3.245839 TGTGGATGACCTCTGGTACCTTA 60.246 47.826 14.36 0.00 35.25 2.69
1246 1353 2.188817 GTGGATGACCTCTGGTACCTT 58.811 52.381 14.36 0.00 35.25 3.50
1251 1358 0.987294 CCTTGTGGATGACCTCTGGT 59.013 55.000 0.00 0.00 34.90 4.00
1320 1427 2.034053 GTGGGCGACAACTTGATTCAAA 59.966 45.455 0.01 0.00 0.00 2.69
1390 1527 1.374758 CCTGGAGGTCAACTGCGTC 60.375 63.158 0.00 0.00 41.01 5.19
1391 1528 1.407656 TTCCTGGAGGTCAACTGCGT 61.408 55.000 0.00 0.00 41.01 5.24
1398 1535 1.613630 GGAGGCTTCCTGGAGGTCA 60.614 63.158 13.23 0.00 40.58 4.02
1408 1545 2.047179 GGTGGTGTCGGAGGCTTC 60.047 66.667 0.00 0.00 0.00 3.86
1410 1547 2.607750 ATGGTGGTGTCGGAGGCT 60.608 61.111 0.00 0.00 0.00 4.58
1415 1552 0.744414 GATGTGGATGGTGGTGTCGG 60.744 60.000 0.00 0.00 0.00 4.79
1418 1555 1.377202 GCGATGTGGATGGTGGTGT 60.377 57.895 0.00 0.00 0.00 4.16
1426 1563 1.077501 CACCCTTGGCGATGTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
1431 1568 0.462047 GTCCTACACCCTTGGCGATG 60.462 60.000 0.00 0.00 0.00 3.84
1432 1569 1.623542 GGTCCTACACCCTTGGCGAT 61.624 60.000 0.00 0.00 39.69 4.58
1444 1581 0.396695 TCGTCAGGGATGGGTCCTAC 60.397 60.000 0.00 0.00 44.44 3.18
1446 1583 1.686110 GTCGTCAGGGATGGGTCCT 60.686 63.158 0.00 0.00 44.44 3.85
1453 1590 2.680352 AGTGGCGTCGTCAGGGAT 60.680 61.111 0.00 0.00 0.00 3.85
1458 1694 2.596338 TCTGGAGTGGCGTCGTCA 60.596 61.111 0.00 0.00 0.00 4.35
1480 1716 2.526873 ACGCACCTCCAGGGAAGT 60.527 61.111 0.00 0.00 40.27 3.01
1507 1743 2.113139 AACAACCTCGTGGCCCAG 59.887 61.111 0.00 0.00 36.63 4.45
1509 1745 3.670377 GCAACAACCTCGTGGCCC 61.670 66.667 0.00 0.00 36.63 5.80
1586 1822 1.423584 TTCAGAGGTGCCAGAGTTGA 58.576 50.000 0.00 0.00 0.00 3.18
1592 1828 2.775911 TGAAGATTCAGAGGTGCCAG 57.224 50.000 0.00 0.00 32.50 4.85
1593 1829 3.349927 CAATGAAGATTCAGAGGTGCCA 58.650 45.455 1.32 0.00 41.08 4.92
1595 1831 2.098770 GGCAATGAAGATTCAGAGGTGC 59.901 50.000 1.32 7.76 41.08 5.01
1602 1838 5.355071 GTGTGTAGATGGCAATGAAGATTCA 59.645 40.000 0.00 0.00 42.14 2.57
1603 1839 5.355071 TGTGTGTAGATGGCAATGAAGATTC 59.645 40.000 0.00 0.00 0.00 2.52
1604 1840 5.255687 TGTGTGTAGATGGCAATGAAGATT 58.744 37.500 0.00 0.00 0.00 2.40
1605 1841 4.847198 TGTGTGTAGATGGCAATGAAGAT 58.153 39.130 0.00 0.00 0.00 2.40
1606 1842 4.284829 TGTGTGTAGATGGCAATGAAGA 57.715 40.909 0.00 0.00 0.00 2.87
1607 1843 4.142534 CCTTGTGTGTAGATGGCAATGAAG 60.143 45.833 0.00 0.00 0.00 3.02
1609 1845 3.008923 TCCTTGTGTGTAGATGGCAATGA 59.991 43.478 0.00 0.00 0.00 2.57
1610 1846 3.346315 TCCTTGTGTGTAGATGGCAATG 58.654 45.455 0.00 0.00 0.00 2.82
1611 1847 3.719268 TCCTTGTGTGTAGATGGCAAT 57.281 42.857 0.00 0.00 0.00 3.56
1612 1848 3.244875 ACATCCTTGTGTGTAGATGGCAA 60.245 43.478 0.00 0.00 40.33 4.52
1613 1849 2.305635 ACATCCTTGTGTGTAGATGGCA 59.694 45.455 0.00 0.00 40.33 4.92
1614 1850 2.679837 CACATCCTTGTGTGTAGATGGC 59.320 50.000 0.00 0.00 46.68 4.40
1625 1861 3.614092 CATACCTCTTGCACATCCTTGT 58.386 45.455 0.00 0.00 36.15 3.16
1626 1862 2.947652 CCATACCTCTTGCACATCCTTG 59.052 50.000 0.00 0.00 0.00 3.61
1627 1863 2.846206 TCCATACCTCTTGCACATCCTT 59.154 45.455 0.00 0.00 0.00 3.36
1628 1864 2.481441 TCCATACCTCTTGCACATCCT 58.519 47.619 0.00 0.00 0.00 3.24
1629 1865 3.209410 CTTCCATACCTCTTGCACATCC 58.791 50.000 0.00 0.00 0.00 3.51
1630 1866 2.615912 GCTTCCATACCTCTTGCACATC 59.384 50.000 0.00 0.00 0.00 3.06
1631 1867 2.648059 GCTTCCATACCTCTTGCACAT 58.352 47.619 0.00 0.00 0.00 3.21
1632 1868 1.340017 GGCTTCCATACCTCTTGCACA 60.340 52.381 0.00 0.00 0.00 4.57
1633 1869 1.340017 TGGCTTCCATACCTCTTGCAC 60.340 52.381 0.00 0.00 0.00 4.57
1634 1870 0.991146 TGGCTTCCATACCTCTTGCA 59.009 50.000 0.00 0.00 0.00 4.08
1635 1871 2.128771 TTGGCTTCCATACCTCTTGC 57.871 50.000 0.00 0.00 31.53 4.01
1637 1873 2.659428 GCATTGGCTTCCATACCTCTT 58.341 47.619 0.00 0.00 36.96 2.85
1639 1875 1.133668 AGGCATTGGCTTCCATACCTC 60.134 52.381 6.96 0.00 40.87 3.85
1640 1876 0.929244 AGGCATTGGCTTCCATACCT 59.071 50.000 6.96 0.00 40.87 3.08
1642 1878 1.035139 CCAGGCATTGGCTTCCATAC 58.965 55.000 10.47 0.00 40.87 2.39
1643 1879 0.106066 CCCAGGCATTGGCTTCCATA 60.106 55.000 10.47 0.00 46.32 2.74
1644 1880 1.382146 CCCAGGCATTGGCTTCCAT 60.382 57.895 10.47 0.00 46.32 3.41
1645 1881 2.037687 CCCAGGCATTGGCTTCCA 59.962 61.111 10.47 0.00 46.32 3.53
1646 1882 3.464494 GCCCAGGCATTGGCTTCC 61.464 66.667 10.47 0.00 46.32 3.46
1650 1886 0.105408 CAAATAGCCCAGGCATTGGC 59.895 55.000 12.03 5.12 46.32 4.52
1652 1888 2.101783 TGTCAAATAGCCCAGGCATTG 58.898 47.619 12.03 12.54 44.88 2.82
1653 1889 2.530460 TGTCAAATAGCCCAGGCATT 57.470 45.000 12.03 6.03 44.88 3.56
1654 1890 2.381911 CTTGTCAAATAGCCCAGGCAT 58.618 47.619 12.03 0.00 44.88 4.40
1655 1891 1.838112 CTTGTCAAATAGCCCAGGCA 58.162 50.000 12.03 0.00 44.88 4.75
1656 1892 0.457443 GCTTGTCAAATAGCCCAGGC 59.543 55.000 0.00 0.00 42.33 4.85
1662 1898 3.142404 GCTTCAGGCTTGTCAAATAGC 57.858 47.619 0.00 0.00 38.06 2.97
1674 1910 1.238439 TAGCAACAACAGCTTCAGGC 58.762 50.000 0.00 0.00 43.25 4.85
1675 1911 3.254166 ACATTAGCAACAACAGCTTCAGG 59.746 43.478 0.00 0.00 43.25 3.86
1676 1912 4.023792 TCACATTAGCAACAACAGCTTCAG 60.024 41.667 0.00 0.00 43.25 3.02
1677 1913 3.882288 TCACATTAGCAACAACAGCTTCA 59.118 39.130 0.00 0.00 43.25 3.02
1678 1914 4.488126 TCACATTAGCAACAACAGCTTC 57.512 40.909 0.00 0.00 43.25 3.86
1679 1915 4.261741 CCTTCACATTAGCAACAACAGCTT 60.262 41.667 0.00 0.00 43.25 3.74
1680 1916 3.254166 CCTTCACATTAGCAACAACAGCT 59.746 43.478 0.00 0.00 45.77 4.24
1681 1917 3.253188 TCCTTCACATTAGCAACAACAGC 59.747 43.478 0.00 0.00 0.00 4.40
1682 1918 4.614535 GCTCCTTCACATTAGCAACAACAG 60.615 45.833 0.00 0.00 35.05 3.16
1683 1919 3.253188 GCTCCTTCACATTAGCAACAACA 59.747 43.478 0.00 0.00 35.05 3.33
1684 1920 3.253188 TGCTCCTTCACATTAGCAACAAC 59.747 43.478 0.00 0.00 41.74 3.32
1685 1921 3.253188 GTGCTCCTTCACATTAGCAACAA 59.747 43.478 0.00 0.00 45.81 2.83
1686 1922 2.813754 GTGCTCCTTCACATTAGCAACA 59.186 45.455 0.00 0.00 45.81 3.33
1687 1923 2.813754 TGTGCTCCTTCACATTAGCAAC 59.186 45.455 0.00 0.00 45.81 4.17
1688 1924 3.138884 TGTGCTCCTTCACATTAGCAA 57.861 42.857 0.00 0.00 45.81 3.91
1689 1925 2.857186 TGTGCTCCTTCACATTAGCA 57.143 45.000 0.00 0.00 41.57 3.49
1690 1926 2.421424 CCTTGTGCTCCTTCACATTAGC 59.579 50.000 0.00 0.00 45.26 3.09
1691 1927 3.942829 TCCTTGTGCTCCTTCACATTAG 58.057 45.455 0.00 0.00 45.26 1.73
1692 1928 4.019411 TCATCCTTGTGCTCCTTCACATTA 60.019 41.667 0.00 0.00 45.26 1.90
1693 1929 2.957402 TCCTTGTGCTCCTTCACATT 57.043 45.000 0.00 0.00 45.26 2.71
1694 1930 2.306805 TCATCCTTGTGCTCCTTCACAT 59.693 45.455 0.00 0.00 45.26 3.21
1695 1931 1.699083 TCATCCTTGTGCTCCTTCACA 59.301 47.619 0.00 0.00 44.39 3.58
1696 1932 2.479566 TCATCCTTGTGCTCCTTCAC 57.520 50.000 0.00 0.00 37.48 3.18
1697 1933 2.942752 GCATCATCCTTGTGCTCCTTCA 60.943 50.000 0.00 0.00 36.02 3.02
1698 1934 1.674962 GCATCATCCTTGTGCTCCTTC 59.325 52.381 0.00 0.00 36.02 3.46
1699 1935 1.005097 TGCATCATCCTTGTGCTCCTT 59.995 47.619 0.00 0.00 39.52 3.36
1700 1936 0.622136 TGCATCATCCTTGTGCTCCT 59.378 50.000 0.00 0.00 39.52 3.69
1701 1937 1.466856 TTGCATCATCCTTGTGCTCC 58.533 50.000 0.00 0.00 39.52 4.70
1702 1938 2.734492 GCTTTGCATCATCCTTGTGCTC 60.734 50.000 0.00 0.00 39.52 4.26
1703 1939 1.203994 GCTTTGCATCATCCTTGTGCT 59.796 47.619 0.00 0.00 39.52 4.40
1704 1940 1.203994 AGCTTTGCATCATCCTTGTGC 59.796 47.619 0.00 0.00 39.26 4.57
1705 1941 2.230508 ACAGCTTTGCATCATCCTTGTG 59.769 45.455 0.00 0.00 0.00 3.33
1706 1942 2.522185 ACAGCTTTGCATCATCCTTGT 58.478 42.857 0.00 0.00 0.00 3.16
1707 1943 3.250744 CAACAGCTTTGCATCATCCTTG 58.749 45.455 0.00 0.00 0.00 3.61
1708 1944 2.232941 CCAACAGCTTTGCATCATCCTT 59.767 45.455 0.00 0.00 0.00 3.36
1709 1945 1.822990 CCAACAGCTTTGCATCATCCT 59.177 47.619 0.00 0.00 0.00 3.24
1710 1946 1.547372 ACCAACAGCTTTGCATCATCC 59.453 47.619 0.00 0.00 0.00 3.51
1711 1947 4.439305 TTACCAACAGCTTTGCATCATC 57.561 40.909 0.00 0.00 0.00 2.92
1712 1948 5.410355 AATTACCAACAGCTTTGCATCAT 57.590 34.783 0.00 0.00 0.00 2.45
1713 1949 4.870123 AATTACCAACAGCTTTGCATCA 57.130 36.364 0.00 0.00 0.00 3.07
1714 1950 5.572896 GTGTAATTACCAACAGCTTTGCATC 59.427 40.000 13.01 0.00 0.00 3.91
1715 1951 5.243730 AGTGTAATTACCAACAGCTTTGCAT 59.756 36.000 13.01 0.00 0.00 3.96
1716 1952 4.582656 AGTGTAATTACCAACAGCTTTGCA 59.417 37.500 13.01 0.00 0.00 4.08
1717 1953 5.048713 AGAGTGTAATTACCAACAGCTTTGC 60.049 40.000 13.01 0.00 0.00 3.68
1718 1954 6.560253 AGAGTGTAATTACCAACAGCTTTG 57.440 37.500 13.01 0.00 0.00 2.77
1719 1955 6.770785 TGAAGAGTGTAATTACCAACAGCTTT 59.229 34.615 13.01 0.32 0.00 3.51
1720 1956 6.296026 TGAAGAGTGTAATTACCAACAGCTT 58.704 36.000 13.01 11.73 0.00 3.74
1721 1957 5.865085 TGAAGAGTGTAATTACCAACAGCT 58.135 37.500 13.01 4.84 0.00 4.24
1722 1958 6.371548 TCATGAAGAGTGTAATTACCAACAGC 59.628 38.462 13.01 2.86 0.00 4.40
1723 1959 7.905604 TCATGAAGAGTGTAATTACCAACAG 57.094 36.000 13.01 0.00 0.00 3.16
1724 1960 7.174253 GGTTCATGAAGAGTGTAATTACCAACA 59.826 37.037 8.80 5.57 0.00 3.33
1725 1961 7.361799 GGGTTCATGAAGAGTGTAATTACCAAC 60.362 40.741 8.80 5.64 0.00 3.77
1726 1962 6.657541 GGGTTCATGAAGAGTGTAATTACCAA 59.342 38.462 8.80 0.00 0.00 3.67
1727 1963 6.177610 GGGTTCATGAAGAGTGTAATTACCA 58.822 40.000 8.80 3.09 0.00 3.25
1728 1964 6.177610 TGGGTTCATGAAGAGTGTAATTACC 58.822 40.000 8.80 2.19 0.00 2.85
1729 1965 7.552687 TGATGGGTTCATGAAGAGTGTAATTAC 59.447 37.037 8.80 8.75 32.98 1.89
1730 1966 7.629157 TGATGGGTTCATGAAGAGTGTAATTA 58.371 34.615 8.80 0.00 32.98 1.40
1731 1967 6.484288 TGATGGGTTCATGAAGAGTGTAATT 58.516 36.000 8.80 0.00 32.98 1.40
1732 1968 6.065976 TGATGGGTTCATGAAGAGTGTAAT 57.934 37.500 8.80 0.00 32.98 1.89
1733 1969 5.497464 TGATGGGTTCATGAAGAGTGTAA 57.503 39.130 8.80 0.00 32.98 2.41
1734 1970 5.245531 GTTGATGGGTTCATGAAGAGTGTA 58.754 41.667 8.80 0.00 33.34 2.90
1735 1971 4.074970 GTTGATGGGTTCATGAAGAGTGT 58.925 43.478 8.80 0.00 33.34 3.55
1736 1972 3.441572 GGTTGATGGGTTCATGAAGAGTG 59.558 47.826 8.80 0.00 33.34 3.51
1737 1973 3.331889 AGGTTGATGGGTTCATGAAGAGT 59.668 43.478 8.80 0.00 33.34 3.24
1738 1974 3.693085 CAGGTTGATGGGTTCATGAAGAG 59.307 47.826 8.80 0.00 33.34 2.85
1739 1975 3.561960 CCAGGTTGATGGGTTCATGAAGA 60.562 47.826 8.80 0.00 36.64 2.87
1750 1986 5.418524 TGAAATGTTCATACCAGGTTGATGG 59.581 40.000 0.00 0.00 39.50 3.51
1751 1987 6.513806 TGAAATGTTCATACCAGGTTGATG 57.486 37.500 0.00 0.00 34.08 3.07
1753 1989 7.122055 GGTATTGAAATGTTCATACCAGGTTGA 59.878 37.037 0.00 0.00 40.11 3.18
1754 1990 7.257722 GGTATTGAAATGTTCATACCAGGTTG 58.742 38.462 0.00 0.00 40.11 3.77
1756 1992 5.891551 GGGTATTGAAATGTTCATACCAGGT 59.108 40.000 19.68 0.00 41.01 4.00
1757 1993 5.008613 CGGGTATTGAAATGTTCATACCAGG 59.991 44.000 19.68 12.81 41.01 4.45
1763 2386 4.881850 GGTCTCGGGTATTGAAATGTTCAT 59.118 41.667 0.00 0.00 39.84 2.57
1767 2390 2.844348 AGGGTCTCGGGTATTGAAATGT 59.156 45.455 0.00 0.00 0.00 2.71
1770 2393 2.617021 GCAAGGGTCTCGGGTATTGAAA 60.617 50.000 0.00 0.00 0.00 2.69
1775 2398 0.541863 CAAGCAAGGGTCTCGGGTAT 59.458 55.000 0.00 0.00 0.00 2.73
1776 2399 1.550130 CCAAGCAAGGGTCTCGGGTA 61.550 60.000 0.00 0.00 0.00 3.69
1778 2401 2.045926 CCAAGCAAGGGTCTCGGG 60.046 66.667 0.00 0.00 0.00 5.14
1780 2403 0.875059 GAAACCAAGCAAGGGTCTCG 59.125 55.000 0.00 0.00 37.77 4.04
1783 2406 1.029681 AACGAAACCAAGCAAGGGTC 58.970 50.000 0.00 0.00 37.77 4.46
1784 2407 0.744281 CAACGAAACCAAGCAAGGGT 59.256 50.000 0.00 0.00 41.41 4.34
1785 2408 0.031994 CCAACGAAACCAAGCAAGGG 59.968 55.000 0.00 0.00 0.00 3.95
1788 2411 1.269517 GCATCCAACGAAACCAAGCAA 60.270 47.619 0.00 0.00 0.00 3.91
1789 2412 0.313672 GCATCCAACGAAACCAAGCA 59.686 50.000 0.00 0.00 0.00 3.91
1790 2413 0.388520 GGCATCCAACGAAACCAAGC 60.389 55.000 0.00 0.00 0.00 4.01
1791 2414 0.243636 GGGCATCCAACGAAACCAAG 59.756 55.000 0.00 0.00 0.00 3.61
1792 2415 0.468214 TGGGCATCCAACGAAACCAA 60.468 50.000 0.00 0.00 40.73 3.67
1794 2417 0.893727 ACTGGGCATCCAACGAAACC 60.894 55.000 0.00 0.00 43.51 3.27
1795 2418 0.958822 AACTGGGCATCCAACGAAAC 59.041 50.000 0.00 0.00 43.51 2.78
1796 2419 0.958091 CAACTGGGCATCCAACGAAA 59.042 50.000 0.00 0.00 43.51 3.46
1797 2420 0.893270 CCAACTGGGCATCCAACGAA 60.893 55.000 0.00 0.00 43.51 3.85
1798 2421 1.303236 CCAACTGGGCATCCAACGA 60.303 57.895 0.00 0.00 43.51 3.85
1799 2422 0.322098 TACCAACTGGGCATCCAACG 60.322 55.000 0.00 0.00 43.51 4.10
1801 2424 2.830923 CAAATACCAACTGGGCATCCAA 59.169 45.455 0.00 0.00 43.51 3.53
1811 3869 2.128771 ATGCTCCGCAAATACCAACT 57.871 45.000 0.00 0.00 43.62 3.16
1813 3871 3.814625 TCATATGCTCCGCAAATACCAA 58.185 40.909 0.00 0.00 43.62 3.67
1815 3873 3.403038 ACTCATATGCTCCGCAAATACC 58.597 45.455 0.00 0.00 43.62 2.73
1818 3876 2.105477 AGGACTCATATGCTCCGCAAAT 59.895 45.455 11.58 0.00 43.62 2.32
1819 3877 1.486310 AGGACTCATATGCTCCGCAAA 59.514 47.619 11.58 0.00 43.62 3.68
1820 3878 1.123077 AGGACTCATATGCTCCGCAA 58.877 50.000 11.58 0.00 43.62 4.85
1821 3879 0.390492 CAGGACTCATATGCTCCGCA 59.610 55.000 11.58 0.00 44.86 5.69
1822 3880 0.676184 TCAGGACTCATATGCTCCGC 59.324 55.000 11.58 0.00 0.00 5.54
1823 3881 2.363680 AGTTCAGGACTCATATGCTCCG 59.636 50.000 11.58 8.28 31.20 4.63
1825 3883 3.129871 GCAGTTCAGGACTCATATGCTC 58.870 50.000 0.00 0.00 36.10 4.26
1826 3884 2.482664 CGCAGTTCAGGACTCATATGCT 60.483 50.000 0.00 0.00 36.10 3.79
4159 18710 1.069378 GTGGTGACGGAATCGACGAC 61.069 60.000 0.00 0.00 40.11 4.34
4186 18737 6.094881 CGATATAGAGAAGGGAGGAGAACATC 59.905 46.154 0.00 0.00 0.00 3.06
4187 18738 5.949354 CGATATAGAGAAGGGAGGAGAACAT 59.051 44.000 0.00 0.00 0.00 2.71
4190 18741 5.586155 ACGATATAGAGAAGGGAGGAGAA 57.414 43.478 0.00 0.00 0.00 2.87
4191 18742 5.317808 CAACGATATAGAGAAGGGAGGAGA 58.682 45.833 0.00 0.00 0.00 3.71
4205 18756 4.652421 AGGGTGAGTTAAGGCAACGATATA 59.348 41.667 0.00 0.00 42.35 0.86
4206 18757 3.454812 AGGGTGAGTTAAGGCAACGATAT 59.545 43.478 0.00 0.00 42.35 1.63
4207 18758 2.835764 AGGGTGAGTTAAGGCAACGATA 59.164 45.455 0.00 0.00 42.35 2.92
4208 18759 1.628846 AGGGTGAGTTAAGGCAACGAT 59.371 47.619 0.00 0.00 42.35 3.73
4220 18774 3.161866 GAGTTCAGAGAGAAGGGTGAGT 58.838 50.000 0.00 0.00 36.78 3.41
4223 18777 3.430453 AGAGAGTTCAGAGAGAAGGGTG 58.570 50.000 0.00 0.00 36.78 4.61
4224 18778 3.825908 AGAGAGTTCAGAGAGAAGGGT 57.174 47.619 0.00 0.00 36.78 4.34
4227 18781 5.245977 AGGGAAAAGAGAGTTCAGAGAGAAG 59.754 44.000 0.00 0.00 36.78 2.85
4228 18782 5.151454 AGGGAAAAGAGAGTTCAGAGAGAA 58.849 41.667 0.00 0.00 0.00 2.87
4249 18803 1.661341 GCTCATGTACTGCTTGGAGG 58.339 55.000 0.00 0.00 0.00 4.30
4273 18827 4.671590 TCGGGCGGAGGTCAGTGA 62.672 66.667 0.00 0.00 0.00 3.41
4277 18831 3.691342 CTGTTCGGGCGGAGGTCA 61.691 66.667 0.00 0.00 0.00 4.02
4288 18842 2.551270 GCGGCAGTGTTCTGTTCG 59.449 61.111 0.00 0.00 43.05 3.95
4354 18908 6.297068 GGAGGTCCATATAGAAAAATAGGGGG 60.297 46.154 0.00 0.00 34.68 5.40
4389 18943 1.545706 AACTCGGTCAGGAAGGAGCC 61.546 60.000 0.00 0.00 31.74 4.70
4393 18947 1.610886 GGGAAAACTCGGTCAGGAAGG 60.611 57.143 0.00 0.00 0.00 3.46
4414 18968 1.590259 GAATCCGAGCTCCTGCGAC 60.590 63.158 8.47 0.00 45.42 5.19
4427 18981 1.079750 GGCGGGATAGCTCGAATCC 60.080 63.158 3.41 5.54 41.67 3.01
4443 18997 1.675641 AGCGATCTTTGGTGTGGGC 60.676 57.895 0.00 0.00 0.00 5.36
4485 19039 0.179100 TTCAGGTAGCATCGCTCTGC 60.179 55.000 0.00 0.00 40.44 4.26
4486 19040 1.929836 GTTTCAGGTAGCATCGCTCTG 59.070 52.381 0.00 0.00 40.44 3.35
4494 19048 2.703536 TGACAGGAAGTTTCAGGTAGCA 59.296 45.455 0.00 0.00 0.00 3.49
4508 19062 2.997315 CAGGAGGCGGTGACAGGA 60.997 66.667 0.00 0.00 0.00 3.86
4509 19063 2.788191 GAACAGGAGGCGGTGACAGG 62.788 65.000 0.00 0.00 0.00 4.00
4515 19069 3.692406 GGACGAACAGGAGGCGGT 61.692 66.667 0.00 0.00 0.00 5.68
4529 19083 3.264866 AACGACCGCACGAGAGGAC 62.265 63.158 9.97 2.08 38.21 3.85
4532 19086 3.470567 GCAACGACCGCACGAGAG 61.471 66.667 6.49 0.00 37.03 3.20
4533 19087 4.273257 TGCAACGACCGCACGAGA 62.273 61.111 6.49 0.00 33.55 4.04
4574 19128 3.370953 GGCATGACAGACTCAGGGTATTT 60.371 47.826 0.00 0.00 30.88 1.40
4583 19137 3.558411 GCGCGGCATGACAGACTC 61.558 66.667 8.83 0.00 0.00 3.36
4588 19142 2.436469 ATGAAGCGCGGCATGACA 60.436 55.556 15.57 4.38 0.00 3.58
4592 19146 2.590007 GAGGATGAAGCGCGGCAT 60.590 61.111 16.13 16.13 0.00 4.40
4628 19182 0.894835 CACGGAGGAAAAATTGGGGG 59.105 55.000 0.00 0.00 0.00 5.40
4639 19193 2.045242 CCTCGTCTCCACGGAGGA 60.045 66.667 13.13 2.90 46.70 3.71
4641 19195 3.827898 GCCCTCGTCTCCACGGAG 61.828 72.222 6.77 6.77 46.70 4.63
4642 19196 4.671590 TGCCCTCGTCTCCACGGA 62.672 66.667 0.00 0.00 46.70 4.69
4645 19199 4.436998 CCGTGCCCTCGTCTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
4646 19200 3.957435 ATCCGTGCCCTCGTCTCCA 62.957 63.158 0.00 0.00 0.00 3.86
4647 19201 2.630592 GAATCCGTGCCCTCGTCTCC 62.631 65.000 0.00 0.00 0.00 3.71
4688 19242 2.761767 TCATAATCAACCGACGAAGGGA 59.238 45.455 0.00 0.00 35.02 4.20
4699 19253 7.389884 AGGATGCATACAGTCATCATAATCAAC 59.610 37.037 12.53 0.00 40.50 3.18
4706 19260 3.575687 TCGAGGATGCATACAGTCATCAT 59.424 43.478 12.53 0.00 40.50 2.45
4725 19279 1.165270 TCAGAATCAGTCGTGCTCGA 58.835 50.000 6.80 6.80 44.12 4.04
4731 19285 1.202348 TGCGTCATCAGAATCAGTCGT 59.798 47.619 0.00 0.00 0.00 4.34
4734 19288 2.484417 GGGATGCGTCATCAGAATCAGT 60.484 50.000 17.57 0.00 42.13 3.41
4736 19290 1.202687 GGGGATGCGTCATCAGAATCA 60.203 52.381 17.57 0.00 42.13 2.57
4738 19292 0.109342 GGGGGATGCGTCATCAGAAT 59.891 55.000 17.57 0.00 42.13 2.40
4743 19297 0.815615 GTTCAGGGGGATGCGTCATC 60.816 60.000 8.47 10.26 39.87 2.92
4756 19329 1.470098 CGAGAGGCAAAATGGTTCAGG 59.530 52.381 0.00 0.00 0.00 3.86
4785 19358 0.737715 GTCGGTAGCTTGCTCCAGTG 60.738 60.000 0.00 0.00 0.00 3.66
4788 19361 2.571757 CGTCGGTAGCTTGCTCCA 59.428 61.111 0.00 0.00 0.00 3.86
4831 19404 4.111016 CGTCGCTCGGTAGTGCCA 62.111 66.667 0.00 0.00 36.97 4.92
4837 19410 2.669229 TGGTGTCGTCGCTCGGTA 60.669 61.111 0.00 0.00 40.32 4.02
4851 19424 1.697982 GAAGTACCCTCTGTTGGTGGT 59.302 52.381 0.00 0.00 36.57 4.16
4866 19439 3.928375 GGCGTAAAATGACGAAGGAAGTA 59.072 43.478 0.00 0.00 45.82 2.24
4877 19450 2.088423 GGTGATGGTGGCGTAAAATGA 58.912 47.619 0.00 0.00 0.00 2.57
4879 19452 1.816224 GTGGTGATGGTGGCGTAAAAT 59.184 47.619 0.00 0.00 0.00 1.82
4902 19475 0.455633 GTAGATGCGGTGTTCGACGT 60.456 55.000 0.00 0.00 42.43 4.34
4917 19490 0.613260 AGTTGAGGCGGCATTGTAGA 59.387 50.000 13.08 0.00 0.00 2.59
4919 19492 1.448985 GAAGTTGAGGCGGCATTGTA 58.551 50.000 13.08 0.00 0.00 2.41
4964 19537 3.066814 GGTACGAGCAGGGACGGT 61.067 66.667 0.00 0.00 0.00 4.83
4987 19560 1.361668 CCGTGAGCCAAAGGACGATG 61.362 60.000 0.00 0.00 33.64 3.84
4988 19561 1.079127 CCGTGAGCCAAAGGACGAT 60.079 57.895 0.00 0.00 33.64 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.