Multiple sequence alignment - TraesCS7B01G190800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G190800 chr7B 100.000 3533 0 0 1 3533 328553107 328556639 0.000000e+00 6525
1 TraesCS7B01G190800 chr7D 91.822 1773 113 16 929 2687 185811334 185813088 0.000000e+00 2442
2 TraesCS7B01G190800 chr7D 82.862 636 77 20 2685 3314 587274120 587274729 3.100000e-150 542
3 TraesCS7B01G190800 chr7A 87.189 2131 150 59 486 2536 193617046 193619133 0.000000e+00 2309
4 TraesCS7B01G190800 chr7A 82.400 875 106 31 2688 3533 119516646 119517501 0.000000e+00 719
5 TraesCS7B01G190800 chr7A 72.816 1133 249 40 1445 2534 164793291 164792175 7.310000e-87 331
6 TraesCS7B01G190800 chr7A 89.610 154 10 5 306 455 730830822 730830671 1.290000e-44 191
7 TraesCS7B01G190800 chr7A 90.845 142 8 3 2549 2687 193619182 193619321 6.020000e-43 185
8 TraesCS7B01G190800 chr2B 98.111 847 15 1 2687 3533 84548308 84547463 0.000000e+00 1474
9 TraesCS7B01G190800 chr5D 92.226 849 57 9 2686 3532 362074624 362073783 0.000000e+00 1194
10 TraesCS7B01G190800 chr5D 90.456 482 41 4 2686 3166 52376010 52376487 6.440000e-177 630
11 TraesCS7B01G190800 chr5D 95.608 296 11 2 1 295 495191912 495191618 1.150000e-129 473
12 TraesCS7B01G190800 chr5D 89.796 147 11 4 306 450 112950649 112950505 6.020000e-43 185
13 TraesCS7B01G190800 chrUn 93.369 739 43 3 1804 2536 382006199 382005461 0.000000e+00 1088
14 TraesCS7B01G190800 chrUn 90.845 142 8 3 2549 2687 462250156 462250017 6.020000e-43 185
15 TraesCS7B01G190800 chr2D 82.554 877 100 29 2685 3533 210347178 210348029 0.000000e+00 723
16 TraesCS7B01G190800 chr2D 89.865 148 12 3 306 452 623515006 623514861 1.670000e-43 187
17 TraesCS7B01G190800 chr6A 82.514 875 101 28 2687 3533 63122933 63123783 0.000000e+00 721
18 TraesCS7B01G190800 chr6A 82.054 886 102 34 2679 3533 100305386 100306245 0.000000e+00 702
19 TraesCS7B01G190800 chr6A 85.797 521 53 10 2676 3189 23609596 23610102 1.870000e-147 532
20 TraesCS7B01G190800 chr4D 82.750 829 98 26 2685 3502 422232708 422231914 0.000000e+00 697
21 TraesCS7B01G190800 chr4D 96.167 287 11 0 3 289 16085467 16085753 1.480000e-128 470
22 TraesCS7B01G190800 chr4D 90.345 145 11 2 306 449 489955325 489955467 1.670000e-43 187
23 TraesCS7B01G190800 chr3A 97.270 293 8 0 1 293 15471882 15471590 6.810000e-137 497
24 TraesCS7B01G190800 chr6D 96.246 293 10 1 1 292 86943950 86943658 2.470000e-131 479
25 TraesCS7B01G190800 chr6D 88.312 154 15 3 306 457 31964681 31964833 7.790000e-42 182
26 TraesCS7B01G190800 chr5A 96.479 284 10 0 3 286 387352719 387353002 1.480000e-128 470
27 TraesCS7B01G190800 chr4A 96.140 285 11 0 2 286 672286929 672287213 1.920000e-127 466
28 TraesCS7B01G190800 chr4A 94.881 293 15 0 1 293 682739562 682739270 3.210000e-125 459
29 TraesCS7B01G190800 chr4B 95.517 290 13 0 2 291 2409828 2410117 6.910000e-127 464
30 TraesCS7B01G190800 chr3B 95.139 288 14 0 2 289 466634822 466634535 4.160000e-124 455
31 TraesCS7B01G190800 chr2A 89.873 158 10 5 306 459 580345867 580345712 7.740000e-47 198
32 TraesCS7B01G190800 chr2A 89.404 151 11 4 306 453 617759763 617759911 6.020000e-43 185
33 TraesCS7B01G190800 chr3D 90.476 147 10 2 306 452 614910337 614910479 1.290000e-44 191
34 TraesCS7B01G190800 chr1A 89.726 146 14 1 306 450 585625168 585625023 6.020000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G190800 chr7B 328553107 328556639 3532 False 6525 6525 100.000 1 3533 1 chr7B.!!$F1 3532
1 TraesCS7B01G190800 chr7D 185811334 185813088 1754 False 2442 2442 91.822 929 2687 1 chr7D.!!$F1 1758
2 TraesCS7B01G190800 chr7D 587274120 587274729 609 False 542 542 82.862 2685 3314 1 chr7D.!!$F2 629
3 TraesCS7B01G190800 chr7A 193617046 193619321 2275 False 1247 2309 89.017 486 2687 2 chr7A.!!$F2 2201
4 TraesCS7B01G190800 chr7A 119516646 119517501 855 False 719 719 82.400 2688 3533 1 chr7A.!!$F1 845
5 TraesCS7B01G190800 chr7A 164792175 164793291 1116 True 331 331 72.816 1445 2534 1 chr7A.!!$R1 1089
6 TraesCS7B01G190800 chr2B 84547463 84548308 845 True 1474 1474 98.111 2687 3533 1 chr2B.!!$R1 846
7 TraesCS7B01G190800 chr5D 362073783 362074624 841 True 1194 1194 92.226 2686 3532 1 chr5D.!!$R2 846
8 TraesCS7B01G190800 chrUn 382005461 382006199 738 True 1088 1088 93.369 1804 2536 1 chrUn.!!$R1 732
9 TraesCS7B01G190800 chr2D 210347178 210348029 851 False 723 723 82.554 2685 3533 1 chr2D.!!$F1 848
10 TraesCS7B01G190800 chr6A 63122933 63123783 850 False 721 721 82.514 2687 3533 1 chr6A.!!$F2 846
11 TraesCS7B01G190800 chr6A 100305386 100306245 859 False 702 702 82.054 2679 3533 1 chr6A.!!$F3 854
12 TraesCS7B01G190800 chr6A 23609596 23610102 506 False 532 532 85.797 2676 3189 1 chr6A.!!$F1 513
13 TraesCS7B01G190800 chr4D 422231914 422232708 794 True 697 697 82.750 2685 3502 1 chr4D.!!$R1 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
472 473 0.033601 TTGAAAGCCGCCCACCATAT 60.034 50.0 0.0 0.0 0.0 1.78 F
916 960 0.035820 TTGTATGACCCCTCGCCAAC 60.036 55.0 0.0 0.0 0.0 3.77 F
1264 1328 0.037697 TGTTGTCTCGTCATTCCCGG 60.038 55.0 0.0 0.0 0.0 5.73 F
1274 1338 0.038890 TCATTCCCGGCATTGACCAA 59.961 50.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2345 0.038618 CACGTGTCGAGATCACCCAA 60.039 55.000 7.58 0.00 32.86 4.12 R
2284 2381 0.182061 GGCAGGATCATGGAGCTCAA 59.818 55.000 17.19 4.05 0.00 3.02 R
2371 2468 0.767060 AAGTGGTTCTCGGGGTCCTT 60.767 55.000 0.00 0.00 0.00 3.36 R
2566 2711 1.272212 GGCAAAATGAGAAGCCCGAAA 59.728 47.619 0.00 0.00 41.25 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 4.680237 CCAGCGCCACCACGAGAA 62.680 66.667 2.29 0.00 34.06 2.87
128 129 3.114616 CAGCGCCACCACGAGAAG 61.115 66.667 2.29 0.00 34.06 2.85
129 130 4.379243 AGCGCCACCACGAGAAGG 62.379 66.667 2.29 0.00 34.06 3.46
130 131 4.373116 GCGCCACCACGAGAAGGA 62.373 66.667 0.00 0.00 34.06 3.36
131 132 2.125912 CGCCACCACGAGAAGGAG 60.126 66.667 0.00 0.00 34.06 3.69
132 133 2.435059 GCCACCACGAGAAGGAGC 60.435 66.667 0.00 0.00 0.00 4.70
133 134 2.266055 CCACCACGAGAAGGAGCC 59.734 66.667 0.00 0.00 0.00 4.70
134 135 2.125912 CACCACGAGAAGGAGCCG 60.126 66.667 0.00 0.00 0.00 5.52
135 136 4.070552 ACCACGAGAAGGAGCCGC 62.071 66.667 0.00 0.00 0.00 6.53
136 137 4.821589 CCACGAGAAGGAGCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
137 138 4.821589 CACGAGAAGGAGCCGCCC 62.822 72.222 0.00 0.00 37.37 6.13
216 217 3.151022 GGAGAGGGAGCACCGGAG 61.151 72.222 9.46 0.00 46.96 4.63
229 230 3.863606 CGGAGGGAGGGCTTCTAG 58.136 66.667 0.00 0.00 0.00 2.43
230 231 1.834822 CGGAGGGAGGGCTTCTAGG 60.835 68.421 0.00 0.00 0.00 3.02
231 232 2.144078 GGAGGGAGGGCTTCTAGGC 61.144 68.421 0.00 0.00 40.51 3.93
232 233 2.444895 AGGGAGGGCTTCTAGGCG 60.445 66.667 0.00 0.00 42.43 5.52
233 234 3.551407 GGGAGGGCTTCTAGGCGG 61.551 72.222 0.00 0.00 42.43 6.13
234 235 4.243008 GGAGGGCTTCTAGGCGGC 62.243 72.222 0.00 0.00 42.43 6.53
235 236 4.593864 GAGGGCTTCTAGGCGGCG 62.594 72.222 0.51 0.51 42.43 6.46
292 293 2.443781 GGGGGTTGGGGAAAGGTC 59.556 66.667 0.00 0.00 0.00 3.85
293 294 2.443781 GGGGTTGGGGAAAGGTCC 59.556 66.667 0.00 0.00 44.10 4.46
301 302 2.263852 GGAAAGGTCCCGACGGTC 59.736 66.667 13.94 5.46 38.08 4.79
302 303 2.263852 GAAAGGTCCCGACGGTCC 59.736 66.667 13.94 14.52 37.60 4.46
303 304 3.306595 GAAAGGTCCCGACGGTCCC 62.307 68.421 13.94 11.89 38.05 4.46
307 308 4.203076 GTCCCGACGGTCCCGATG 62.203 72.222 13.94 3.95 42.83 3.84
308 309 4.746309 TCCCGACGGTCCCGATGT 62.746 66.667 13.94 0.00 42.83 3.06
309 310 4.203076 CCCGACGGTCCCGATGTC 62.203 72.222 13.94 0.00 42.83 3.06
310 311 3.445687 CCGACGGTCCCGATGTCA 61.446 66.667 13.54 0.00 42.83 3.58
311 312 2.202570 CGACGGTCCCGATGTCAC 60.203 66.667 13.54 0.00 42.83 3.67
312 313 2.967397 GACGGTCCCGATGTCACA 59.033 61.111 13.54 0.00 42.83 3.58
313 314 1.515954 GACGGTCCCGATGTCACAT 59.484 57.895 13.54 0.00 42.83 3.21
314 315 0.527817 GACGGTCCCGATGTCACATC 60.528 60.000 13.54 7.83 42.83 3.06
315 316 0.970937 ACGGTCCCGATGTCACATCT 60.971 55.000 15.89 0.00 42.83 2.90
316 317 1.029681 CGGTCCCGATGTCACATCTA 58.970 55.000 15.89 0.00 42.83 1.98
317 318 1.407618 CGGTCCCGATGTCACATCTAA 59.592 52.381 15.89 0.00 42.83 2.10
318 319 2.798499 CGGTCCCGATGTCACATCTAAC 60.798 54.545 15.89 10.15 42.83 2.34
319 320 2.483188 GGTCCCGATGTCACATCTAACC 60.483 54.545 15.89 14.80 0.00 2.85
320 321 2.431057 GTCCCGATGTCACATCTAACCT 59.569 50.000 15.89 0.00 0.00 3.50
321 322 3.104512 TCCCGATGTCACATCTAACCTT 58.895 45.455 15.89 0.00 0.00 3.50
322 323 3.118775 TCCCGATGTCACATCTAACCTTG 60.119 47.826 15.89 0.00 0.00 3.61
323 324 3.369471 CCCGATGTCACATCTAACCTTGT 60.369 47.826 15.89 0.00 0.00 3.16
324 325 3.618594 CCGATGTCACATCTAACCTTGTG 59.381 47.826 15.89 0.00 43.61 3.33
325 326 4.245660 CGATGTCACATCTAACCTTGTGT 58.754 43.478 15.89 0.00 42.95 3.72
326 327 4.327357 CGATGTCACATCTAACCTTGTGTC 59.673 45.833 15.89 0.00 42.95 3.67
327 328 4.002906 TGTCACATCTAACCTTGTGTCC 57.997 45.455 3.30 0.00 42.95 4.02
328 329 3.389656 TGTCACATCTAACCTTGTGTCCA 59.610 43.478 3.30 0.12 42.95 4.02
329 330 3.997021 GTCACATCTAACCTTGTGTCCAG 59.003 47.826 3.30 0.00 42.95 3.86
330 331 3.646162 TCACATCTAACCTTGTGTCCAGT 59.354 43.478 3.30 0.00 42.95 4.00
331 332 4.836175 TCACATCTAACCTTGTGTCCAGTA 59.164 41.667 3.30 0.00 42.95 2.74
332 333 5.483937 TCACATCTAACCTTGTGTCCAGTAT 59.516 40.000 3.30 0.00 42.95 2.12
333 334 5.582269 CACATCTAACCTTGTGTCCAGTATG 59.418 44.000 0.00 0.00 38.69 2.39
334 335 5.248477 ACATCTAACCTTGTGTCCAGTATGT 59.752 40.000 0.00 0.00 0.00 2.29
335 336 5.818678 TCTAACCTTGTGTCCAGTATGTT 57.181 39.130 0.00 0.00 0.00 2.71
336 337 6.182507 TCTAACCTTGTGTCCAGTATGTTT 57.817 37.500 0.00 0.00 0.00 2.83
337 338 5.995282 TCTAACCTTGTGTCCAGTATGTTTG 59.005 40.000 0.00 0.00 0.00 2.93
338 339 4.164843 ACCTTGTGTCCAGTATGTTTGT 57.835 40.909 0.00 0.00 0.00 2.83
339 340 3.882888 ACCTTGTGTCCAGTATGTTTGTG 59.117 43.478 0.00 0.00 0.00 3.33
340 341 3.253188 CCTTGTGTCCAGTATGTTTGTGG 59.747 47.826 0.00 0.00 0.00 4.17
341 342 3.569194 TGTGTCCAGTATGTTTGTGGT 57.431 42.857 0.00 0.00 32.73 4.16
342 343 3.892284 TGTGTCCAGTATGTTTGTGGTT 58.108 40.909 0.00 0.00 32.73 3.67
343 344 4.274147 TGTGTCCAGTATGTTTGTGGTTT 58.726 39.130 0.00 0.00 32.73 3.27
344 345 5.437946 TGTGTCCAGTATGTTTGTGGTTTA 58.562 37.500 0.00 0.00 32.73 2.01
345 346 6.065374 TGTGTCCAGTATGTTTGTGGTTTAT 58.935 36.000 0.00 0.00 32.73 1.40
346 347 6.547880 TGTGTCCAGTATGTTTGTGGTTTATT 59.452 34.615 0.00 0.00 32.73 1.40
347 348 7.068839 TGTGTCCAGTATGTTTGTGGTTTATTT 59.931 33.333 0.00 0.00 32.73 1.40
348 349 7.923878 GTGTCCAGTATGTTTGTGGTTTATTTT 59.076 33.333 0.00 0.00 32.73 1.82
349 350 8.478877 TGTCCAGTATGTTTGTGGTTTATTTTT 58.521 29.630 0.00 0.00 32.73 1.94
384 385 3.987807 TTTTTGTTTCTTGTTGCTGCG 57.012 38.095 0.00 0.00 0.00 5.18
385 386 2.929531 TTTGTTTCTTGTTGCTGCGA 57.070 40.000 0.00 0.00 0.00 5.10
386 387 2.473530 TTGTTTCTTGTTGCTGCGAG 57.526 45.000 0.00 0.00 0.00 5.03
387 388 1.378531 TGTTTCTTGTTGCTGCGAGT 58.621 45.000 0.00 0.00 0.00 4.18
388 389 1.742831 TGTTTCTTGTTGCTGCGAGTT 59.257 42.857 0.00 0.00 0.00 3.01
389 390 2.939756 TGTTTCTTGTTGCTGCGAGTTA 59.060 40.909 0.00 0.00 0.00 2.24
390 391 3.563808 TGTTTCTTGTTGCTGCGAGTTAT 59.436 39.130 0.00 0.00 0.00 1.89
391 392 4.036262 TGTTTCTTGTTGCTGCGAGTTATT 59.964 37.500 0.00 0.00 0.00 1.40
392 393 4.829064 TTCTTGTTGCTGCGAGTTATTT 57.171 36.364 0.00 0.00 0.00 1.40
393 394 4.145876 TCTTGTTGCTGCGAGTTATTTG 57.854 40.909 0.00 0.00 0.00 2.32
394 395 3.563808 TCTTGTTGCTGCGAGTTATTTGT 59.436 39.130 0.00 0.00 0.00 2.83
395 396 4.752604 TCTTGTTGCTGCGAGTTATTTGTA 59.247 37.500 0.00 0.00 0.00 2.41
396 397 4.661993 TGTTGCTGCGAGTTATTTGTAG 57.338 40.909 0.00 0.00 0.00 2.74
397 398 3.435327 TGTTGCTGCGAGTTATTTGTAGG 59.565 43.478 0.00 0.00 0.00 3.18
398 399 3.603158 TGCTGCGAGTTATTTGTAGGA 57.397 42.857 0.00 0.00 0.00 2.94
399 400 3.521560 TGCTGCGAGTTATTTGTAGGAG 58.478 45.455 0.00 0.00 0.00 3.69
400 401 3.056107 TGCTGCGAGTTATTTGTAGGAGT 60.056 43.478 0.00 0.00 0.00 3.85
401 402 3.933332 GCTGCGAGTTATTTGTAGGAGTT 59.067 43.478 0.00 0.00 0.00 3.01
402 403 4.392138 GCTGCGAGTTATTTGTAGGAGTTT 59.608 41.667 0.00 0.00 0.00 2.66
403 404 5.579511 GCTGCGAGTTATTTGTAGGAGTTTA 59.420 40.000 0.00 0.00 0.00 2.01
404 405 6.237861 GCTGCGAGTTATTTGTAGGAGTTTAG 60.238 42.308 0.00 0.00 0.00 1.85
405 406 6.927416 TGCGAGTTATTTGTAGGAGTTTAGA 58.073 36.000 0.00 0.00 0.00 2.10
406 407 7.553334 TGCGAGTTATTTGTAGGAGTTTAGAT 58.447 34.615 0.00 0.00 0.00 1.98
407 408 7.491372 TGCGAGTTATTTGTAGGAGTTTAGATG 59.509 37.037 0.00 0.00 0.00 2.90
408 409 7.491696 GCGAGTTATTTGTAGGAGTTTAGATGT 59.508 37.037 0.00 0.00 0.00 3.06
409 410 8.808529 CGAGTTATTTGTAGGAGTTTAGATGTG 58.191 37.037 0.00 0.00 0.00 3.21
410 411 9.871238 GAGTTATTTGTAGGAGTTTAGATGTGA 57.129 33.333 0.00 0.00 0.00 3.58
411 412 9.654663 AGTTATTTGTAGGAGTTTAGATGTGAC 57.345 33.333 0.00 0.00 0.00 3.67
412 413 9.431887 GTTATTTGTAGGAGTTTAGATGTGACA 57.568 33.333 0.00 0.00 0.00 3.58
414 415 8.723942 ATTTGTAGGAGTTTAGATGTGACATC 57.276 34.615 17.46 17.46 0.00 3.06
415 416 6.222038 TGTAGGAGTTTAGATGTGACATCC 57.778 41.667 21.05 6.49 0.00 3.51
416 417 5.958380 TGTAGGAGTTTAGATGTGACATCCT 59.042 40.000 21.05 13.52 39.25 3.24
417 418 6.440647 TGTAGGAGTTTAGATGTGACATCCTT 59.559 38.462 21.05 7.22 37.18 3.36
418 419 7.618117 TGTAGGAGTTTAGATGTGACATCCTTA 59.382 37.037 21.05 6.22 37.18 2.69
419 420 7.496346 AGGAGTTTAGATGTGACATCCTTAA 57.504 36.000 21.05 11.73 31.97 1.85
420 421 7.918076 AGGAGTTTAGATGTGACATCCTTAAA 58.082 34.615 21.05 16.39 31.97 1.52
421 422 8.383175 AGGAGTTTAGATGTGACATCCTTAAAA 58.617 33.333 21.05 13.52 31.97 1.52
422 423 9.010029 GGAGTTTAGATGTGACATCCTTAAAAA 57.990 33.333 21.05 11.39 0.00 1.94
450 451 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
451 452 9.950496 ATCTAGATGTGAATTAGACAAACTGTT 57.050 29.630 3.89 0.00 0.00 3.16
452 453 9.208022 TCTAGATGTGAATTAGACAAACTGTTG 57.792 33.333 0.00 0.00 40.84 3.33
462 463 2.874849 ACAAACTGTTGTTGAAAGCCG 58.125 42.857 0.00 0.00 46.01 5.52
463 464 1.587946 CAAACTGTTGTTGAAAGCCGC 59.412 47.619 0.00 0.00 36.39 6.53
464 465 0.102300 AACTGTTGTTGAAAGCCGCC 59.898 50.000 0.00 0.00 34.71 6.13
465 466 1.007387 CTGTTGTTGAAAGCCGCCC 60.007 57.895 0.00 0.00 0.00 6.13
466 467 1.733402 CTGTTGTTGAAAGCCGCCCA 61.733 55.000 0.00 0.00 0.00 5.36
467 468 1.299850 GTTGTTGAAAGCCGCCCAC 60.300 57.895 0.00 0.00 0.00 4.61
468 469 2.494530 TTGTTGAAAGCCGCCCACC 61.495 57.895 0.00 0.00 0.00 4.61
469 470 2.909965 GTTGAAAGCCGCCCACCA 60.910 61.111 0.00 0.00 0.00 4.17
470 471 2.117206 TTGAAAGCCGCCCACCAT 59.883 55.556 0.00 0.00 0.00 3.55
471 472 0.963355 GTTGAAAGCCGCCCACCATA 60.963 55.000 0.00 0.00 0.00 2.74
472 473 0.033601 TTGAAAGCCGCCCACCATAT 60.034 50.000 0.00 0.00 0.00 1.78
473 474 0.751277 TGAAAGCCGCCCACCATATG 60.751 55.000 0.00 0.00 0.00 1.78
474 475 0.465460 GAAAGCCGCCCACCATATGA 60.465 55.000 3.65 0.00 0.00 2.15
475 476 0.751643 AAAGCCGCCCACCATATGAC 60.752 55.000 3.65 0.00 0.00 3.06
476 477 1.920734 AAGCCGCCCACCATATGACA 61.921 55.000 3.65 0.00 0.00 3.58
477 478 2.186826 GCCGCCCACCATATGACAC 61.187 63.158 3.65 0.00 0.00 3.67
478 479 1.526887 CCGCCCACCATATGACACT 59.473 57.895 3.65 0.00 0.00 3.55
479 480 0.756294 CCGCCCACCATATGACACTA 59.244 55.000 3.65 0.00 0.00 2.74
480 481 1.140052 CCGCCCACCATATGACACTAA 59.860 52.381 3.65 0.00 0.00 2.24
481 482 2.420827 CCGCCCACCATATGACACTAAA 60.421 50.000 3.65 0.00 0.00 1.85
482 483 2.612212 CGCCCACCATATGACACTAAAC 59.388 50.000 3.65 0.00 0.00 2.01
483 484 3.616219 GCCCACCATATGACACTAAACA 58.384 45.455 3.65 0.00 0.00 2.83
484 485 3.377172 GCCCACCATATGACACTAAACAC 59.623 47.826 3.65 0.00 0.00 3.32
492 493 9.515226 ACCATATGACACTAAACACTAACAAAT 57.485 29.630 3.65 0.00 0.00 2.32
500 501 7.495279 ACACTAAACACTAACAAATAACCGTCA 59.505 33.333 0.00 0.00 0.00 4.35
514 515 3.045601 ACCGTCAGAGAGAACCATTTG 57.954 47.619 0.00 0.00 0.00 2.32
528 529 6.555315 AGAACCATTTGCGATTATCTTTGTC 58.445 36.000 0.00 0.00 0.00 3.18
534 535 8.066595 CCATTTGCGATTATCTTTGTCTAAGAG 58.933 37.037 3.19 0.00 45.69 2.85
535 536 7.539712 TTTGCGATTATCTTTGTCTAAGAGG 57.460 36.000 3.19 0.00 45.69 3.69
536 537 6.465439 TGCGATTATCTTTGTCTAAGAGGA 57.535 37.500 3.19 0.00 45.69 3.71
539 540 6.461788 GCGATTATCTTTGTCTAAGAGGAGGT 60.462 42.308 3.19 0.00 45.69 3.85
582 583 0.737715 GCCTTAGGTGTGTCGAGCTG 60.738 60.000 0.00 0.00 0.00 4.24
594 595 4.046462 GTGTCGAGCTGTTAGTGTACAAA 58.954 43.478 0.00 0.00 0.00 2.83
608 609 6.826893 AGTGTACAAACATGAAAATGCAAC 57.173 33.333 0.00 0.00 38.08 4.17
638 642 7.362662 TGCAACTTACAATGAAGAAACTGATC 58.637 34.615 0.00 0.00 0.00 2.92
643 647 5.597813 ACAATGAAGAAACTGATCGACAC 57.402 39.130 0.00 0.00 0.00 3.67
647 651 5.139435 TGAAGAAACTGATCGACACAGAT 57.861 39.130 22.52 11.89 38.55 2.90
670 674 3.479370 CAGTCTTACTGCGCCAGC 58.521 61.111 4.18 0.00 39.62 4.85
672 676 0.173481 CAGTCTTACTGCGCCAGCTA 59.827 55.000 4.18 0.00 45.42 3.32
674 678 1.134965 AGTCTTACTGCGCCAGCTAAG 60.135 52.381 4.18 12.12 45.42 2.18
675 679 0.460284 TCTTACTGCGCCAGCTAAGC 60.460 55.000 4.18 0.00 45.42 3.09
678 682 0.107703 TACTGCGCCAGCTAAGCAAT 60.108 50.000 4.18 4.34 45.42 3.56
690 694 4.706962 CAGCTAAGCAATTTTAACCTCCCT 59.293 41.667 0.00 0.00 0.00 4.20
698 707 5.261216 CAATTTTAACCTCCCTAGCTGGAA 58.739 41.667 0.00 0.00 38.35 3.53
699 708 5.734031 ATTTTAACCTCCCTAGCTGGAAT 57.266 39.130 0.00 0.00 38.35 3.01
712 721 1.684248 GCTGGAATTCCATGGCAGTCT 60.684 52.381 27.20 0.00 46.46 3.24
716 725 2.208431 GAATTCCATGGCAGTCTCTCG 58.792 52.381 6.96 0.00 0.00 4.04
736 745 0.662077 CGGGCGTTAAAACCTTGTGC 60.662 55.000 0.00 0.00 0.00 4.57
737 746 0.662077 GGGCGTTAAAACCTTGTGCG 60.662 55.000 0.00 0.00 0.00 5.34
751 760 2.915137 TGCGGAAACCTTTGGGCC 60.915 61.111 0.00 0.00 35.63 5.80
778 790 8.506168 AACGCATGAGAATATAAGAAAGGAAA 57.494 30.769 2.50 0.00 0.00 3.13
789 801 9.682465 AATATAAGAAAGGAAAACTACCTGACC 57.318 33.333 0.00 0.00 37.85 4.02
801 841 6.388619 AACTACCTGACCAAATAACTCCAT 57.611 37.500 0.00 0.00 0.00 3.41
804 844 4.998051 ACCTGACCAAATAACTCCATGTT 58.002 39.130 0.00 0.00 42.31 2.71
829 873 8.718102 TTCTAGTGGATTAATAACTGCTCAAC 57.282 34.615 11.72 0.00 0.00 3.18
831 875 5.815581 AGTGGATTAATAACTGCTCAACCA 58.184 37.500 3.12 0.00 0.00 3.67
835 879 6.543465 TGGATTAATAACTGCTCAACCAGATG 59.457 38.462 0.00 0.00 36.67 2.90
837 881 7.067494 GGATTAATAACTGCTCAACCAGATGTT 59.933 37.037 0.00 0.00 37.80 2.71
839 883 3.996150 AACTGCTCAACCAGATGTTTG 57.004 42.857 0.00 0.00 34.00 2.93
840 884 1.610522 ACTGCTCAACCAGATGTTTGC 59.389 47.619 0.00 0.00 34.00 3.68
841 885 0.961019 TGCTCAACCAGATGTTTGCC 59.039 50.000 0.00 0.00 34.00 4.52
842 886 0.961019 GCTCAACCAGATGTTTGCCA 59.039 50.000 0.00 0.00 34.00 4.92
843 887 1.068055 GCTCAACCAGATGTTTGCCAG 60.068 52.381 0.00 0.00 34.00 4.85
855 899 0.675083 TTTGCCAGTTGCCACATCAG 59.325 50.000 0.00 0.00 40.16 2.90
868 912 2.473816 CACATCAGCCAGTACGTATGG 58.526 52.381 15.59 15.59 41.04 2.74
872 916 3.688694 TCAGCCAGTACGTATGGTTTT 57.311 42.857 18.93 8.09 40.17 2.43
877 921 4.114794 GCCAGTACGTATGGTTTTCGTAT 58.885 43.478 18.93 0.00 40.99 3.06
891 935 5.288472 GGTTTTCGTATGACCATGCATTTTC 59.712 40.000 0.00 0.00 33.61 2.29
892 936 3.942539 TCGTATGACCATGCATTTTCG 57.057 42.857 0.00 0.00 0.00 3.46
893 937 2.031560 TCGTATGACCATGCATTTTCGC 59.968 45.455 0.00 0.00 0.00 4.70
905 949 5.760193 TGCATTTTCGCATTTTGTATGAC 57.240 34.783 0.00 0.00 36.86 3.06
906 950 4.624882 TGCATTTTCGCATTTTGTATGACC 59.375 37.500 0.00 0.00 36.86 4.02
907 951 4.032786 GCATTTTCGCATTTTGTATGACCC 59.967 41.667 0.00 0.00 0.00 4.46
908 952 3.859411 TTTCGCATTTTGTATGACCCC 57.141 42.857 0.00 0.00 0.00 4.95
909 953 2.799126 TCGCATTTTGTATGACCCCT 57.201 45.000 0.00 0.00 0.00 4.79
910 954 2.639065 TCGCATTTTGTATGACCCCTC 58.361 47.619 0.00 0.00 0.00 4.30
911 955 1.330521 CGCATTTTGTATGACCCCTCG 59.669 52.381 0.00 0.00 0.00 4.63
912 956 1.065551 GCATTTTGTATGACCCCTCGC 59.934 52.381 0.00 0.00 0.00 5.03
913 957 1.676006 CATTTTGTATGACCCCTCGCC 59.324 52.381 0.00 0.00 0.00 5.54
914 958 0.693622 TTTTGTATGACCCCTCGCCA 59.306 50.000 0.00 0.00 0.00 5.69
915 959 0.693622 TTTGTATGACCCCTCGCCAA 59.306 50.000 0.00 0.00 0.00 4.52
916 960 0.035820 TTGTATGACCCCTCGCCAAC 60.036 55.000 0.00 0.00 0.00 3.77
917 961 1.195442 TGTATGACCCCTCGCCAACA 61.195 55.000 0.00 0.00 0.00 3.33
918 962 0.743345 GTATGACCCCTCGCCAACAC 60.743 60.000 0.00 0.00 0.00 3.32
919 963 1.195442 TATGACCCCTCGCCAACACA 61.195 55.000 0.00 0.00 0.00 3.72
920 964 2.668550 GACCCCTCGCCAACACAC 60.669 66.667 0.00 0.00 0.00 3.82
921 965 4.265056 ACCCCTCGCCAACACACC 62.265 66.667 0.00 0.00 0.00 4.16
922 966 4.263572 CCCCTCGCCAACACACCA 62.264 66.667 0.00 0.00 0.00 4.17
923 967 2.978010 CCCTCGCCAACACACCAC 60.978 66.667 0.00 0.00 0.00 4.16
958 1002 0.613012 AAGAACAATGCTCCAGGCCC 60.613 55.000 0.00 0.00 40.92 5.80
980 1033 6.158023 CCCCCTATATATATCGCGAGTTTT 57.842 41.667 16.66 0.00 0.00 2.43
981 1034 6.579865 CCCCCTATATATATCGCGAGTTTTT 58.420 40.000 16.66 0.00 0.00 1.94
982 1035 7.719483 CCCCCTATATATATCGCGAGTTTTTA 58.281 38.462 16.66 1.11 0.00 1.52
983 1036 8.365647 CCCCCTATATATATCGCGAGTTTTTAT 58.634 37.037 16.66 9.68 0.00 1.40
996 1051 2.228822 AGTTTTTATGAGTTGCCCAGCG 59.771 45.455 0.00 0.00 0.00 5.18
1003 1061 0.109132 GAGTTGCCCAGCGAAAATGG 60.109 55.000 0.00 0.00 37.58 3.16
1007 1065 1.446618 GCCCAGCGAAAATGGCTTG 60.447 57.895 0.00 0.00 39.08 4.01
1008 1066 1.966762 CCCAGCGAAAATGGCTTGT 59.033 52.632 0.00 0.00 39.08 3.16
1009 1067 0.318120 CCCAGCGAAAATGGCTTGTT 59.682 50.000 0.00 0.00 39.08 2.83
1011 1069 1.270550 CCAGCGAAAATGGCTTGTTCT 59.729 47.619 2.27 0.00 39.08 3.01
1017 1075 4.672409 CGAAAATGGCTTGTTCTATTCCC 58.328 43.478 2.27 0.00 0.00 3.97
1027 1085 3.713003 TGTTCTATTCCCTCTCTGCTCA 58.287 45.455 0.00 0.00 0.00 4.26
1076 1134 0.955919 GGCAGCTCTTACCACACCAC 60.956 60.000 0.00 0.00 0.00 4.16
1081 1139 0.687354 CTCTTACCACACCACCAGCT 59.313 55.000 0.00 0.00 0.00 4.24
1090 1148 2.283529 ACCACCAGCTACTCCCACG 61.284 63.158 0.00 0.00 0.00 4.94
1092 1150 2.119832 ACCAGCTACTCCCACGGT 59.880 61.111 0.00 0.00 0.00 4.83
1097 1155 1.079336 GCTACTCCCACGGTGGAAC 60.079 63.158 28.36 6.97 40.96 3.62
1122 1180 1.141881 CGTCCTCCGTTCATCCCAG 59.858 63.158 0.00 0.00 0.00 4.45
1175 1233 4.561500 TCCATTCCGGTGAAGTATTTCA 57.438 40.909 0.00 0.00 40.92 2.69
1261 1325 3.125316 GGTCATTGTTGTCTCGTCATTCC 59.875 47.826 0.00 0.00 0.00 3.01
1263 1327 1.790755 TTGTTGTCTCGTCATTCCCG 58.209 50.000 0.00 0.00 0.00 5.14
1264 1328 0.037697 TGTTGTCTCGTCATTCCCGG 60.038 55.000 0.00 0.00 0.00 5.73
1266 1330 1.822114 TTGTCTCGTCATTCCCGGCA 61.822 55.000 0.00 0.00 0.00 5.69
1267 1331 1.144057 GTCTCGTCATTCCCGGCAT 59.856 57.895 0.00 0.00 0.00 4.40
1269 1333 0.461870 TCTCGTCATTCCCGGCATTG 60.462 55.000 0.00 0.00 0.00 2.82
1270 1334 0.461870 CTCGTCATTCCCGGCATTGA 60.462 55.000 0.00 0.00 0.00 2.57
1271 1335 0.742990 TCGTCATTCCCGGCATTGAC 60.743 55.000 9.89 9.89 36.09 3.18
1272 1336 1.714899 CGTCATTCCCGGCATTGACC 61.715 60.000 13.46 0.00 36.06 4.02
1273 1337 0.679640 GTCATTCCCGGCATTGACCA 60.680 55.000 8.91 0.00 33.91 4.02
1274 1338 0.038890 TCATTCCCGGCATTGACCAA 59.961 50.000 0.00 0.00 0.00 3.67
1275 1339 1.113788 CATTCCCGGCATTGACCAAT 58.886 50.000 0.00 0.00 0.00 3.16
1279 1343 2.096248 TCCCGGCATTGACCAATTAAC 58.904 47.619 0.00 0.00 0.00 2.01
1281 1345 2.495669 CCCGGCATTGACCAATTAACTT 59.504 45.455 0.00 0.00 0.00 2.66
1282 1346 3.510719 CCGGCATTGACCAATTAACTTG 58.489 45.455 0.00 0.00 34.42 3.16
1283 1347 2.923020 CGGCATTGACCAATTAACTTGC 59.077 45.455 0.00 0.00 33.20 4.01
1284 1348 3.261580 GGCATTGACCAATTAACTTGCC 58.738 45.455 6.94 6.94 33.20 4.52
1285 1349 3.055891 GGCATTGACCAATTAACTTGCCT 60.056 43.478 12.84 0.00 32.72 4.75
1286 1350 3.928375 GCATTGACCAATTAACTTGCCTG 59.072 43.478 0.00 0.00 33.20 4.85
1288 1352 5.336372 GCATTGACCAATTAACTTGCCTGTA 60.336 40.000 0.00 0.00 33.20 2.74
1289 1353 5.699097 TTGACCAATTAACTTGCCTGTAC 57.301 39.130 0.00 0.00 33.20 2.90
1307 1377 4.062293 TGTACTTTTTCAGGTGATGACGG 58.938 43.478 0.00 0.00 37.77 4.79
1308 1378 2.504367 ACTTTTTCAGGTGATGACGGG 58.496 47.619 0.00 0.00 37.77 5.28
1387 1460 2.358737 AAAGCAAGCCCTCGGTCG 60.359 61.111 0.00 0.00 0.00 4.79
1388 1461 2.879233 AAAGCAAGCCCTCGGTCGA 61.879 57.895 0.00 0.00 0.00 4.20
1641 1714 4.028490 TGCCCCCGTGCTTTCGAT 62.028 61.111 0.00 0.00 0.00 3.59
1662 1735 0.613853 CGTCCAAGTCCACCTCCCTA 60.614 60.000 0.00 0.00 0.00 3.53
1664 1737 0.790993 TCCAAGTCCACCTCCCTAGT 59.209 55.000 0.00 0.00 0.00 2.57
1709 1782 2.369629 GCGACGTAAGCGAGTGCAA 61.370 57.895 0.00 0.00 46.23 4.08
1743 1816 1.771073 CGCGCACACTCAACTGGAAA 61.771 55.000 8.75 0.00 0.00 3.13
1773 1849 0.958822 AAAATGCCACCTTCGTGACC 59.041 50.000 0.00 0.00 43.14 4.02
1802 1878 2.202703 GCTCACGCGGTCGGTTAT 60.203 61.111 12.47 0.00 40.69 1.89
1806 1882 1.062365 CACGCGGTCGGTTATCGTA 59.938 57.895 12.47 0.00 40.69 3.43
1809 1885 0.236711 CGCGGTCGGTTATCGTAGAT 59.763 55.000 0.00 0.00 45.12 1.98
2070 2161 0.702902 TCCACCCGAACCTCTACTCT 59.297 55.000 0.00 0.00 0.00 3.24
2151 2242 0.108281 TTGGTGACACGGTGTTCGAA 60.108 50.000 15.94 11.87 42.67 3.71
2163 2254 1.275657 GTTCGAACTGCACACCACG 59.724 57.895 20.97 0.00 0.00 4.94
2284 2381 2.273179 TGCTACGACTTCACCGGCT 61.273 57.895 0.00 0.00 0.00 5.52
2293 2390 2.454832 CTTCACCGGCTTGAGCTCCA 62.455 60.000 12.15 0.00 41.70 3.86
2361 2458 3.254892 GGACCTTGACATCGAGAACTTC 58.745 50.000 0.00 0.00 0.00 3.01
2371 2468 6.025749 ACATCGAGAACTTCATGTACTTCA 57.974 37.500 0.00 0.00 30.73 3.02
2536 2645 3.272334 CCCGCCGCTGCTGATTAC 61.272 66.667 0.00 0.00 34.43 1.89
2579 2727 3.133901 TGCATAGTATTTCGGGCTTCTCA 59.866 43.478 0.00 0.00 0.00 3.27
2629 2777 8.507249 GCCCATGTAATAAGAATCATAAGTCAC 58.493 37.037 0.00 0.00 0.00 3.67
2659 2807 3.469008 TGTAACTGTGGAGTGGAGTTG 57.531 47.619 0.00 0.00 32.27 3.16
2725 2873 3.185797 AGTCGACTGTTTTGTAATTCGCC 59.814 43.478 19.30 0.00 0.00 5.54
2913 3062 0.178975 TGAATTTGGAGCGGGGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
3048 3225 1.425428 GAGGATTTTGACGGCAGCG 59.575 57.895 0.00 0.00 0.00 5.18
3397 3602 5.728344 GCGTAGTTGTTGTTAGTTTTCAGCA 60.728 40.000 0.00 0.00 0.00 4.41
3471 3676 9.173939 CTGAATTTCATCTAGTTTTGTGTTGTC 57.826 33.333 0.00 0.00 0.00 3.18
3510 3715 7.664731 TGTCCATTTCGGTGGTTTTATTAAGTA 59.335 33.333 3.04 0.00 40.27 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 4.680237 TTCTCGTGGTGGCGCTGG 62.680 66.667 7.64 0.00 0.00 4.85
111 112 3.114616 CTTCTCGTGGTGGCGCTG 61.115 66.667 7.64 0.00 0.00 5.18
112 113 4.379243 CCTTCTCGTGGTGGCGCT 62.379 66.667 7.64 0.00 0.00 5.92
113 114 4.373116 TCCTTCTCGTGGTGGCGC 62.373 66.667 0.00 0.00 0.00 6.53
114 115 2.125912 CTCCTTCTCGTGGTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
115 116 2.435059 GCTCCTTCTCGTGGTGGC 60.435 66.667 0.00 0.00 0.00 5.01
116 117 2.266055 GGCTCCTTCTCGTGGTGG 59.734 66.667 0.00 0.00 0.00 4.61
117 118 2.125912 CGGCTCCTTCTCGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
118 119 4.070552 GCGGCTCCTTCTCGTGGT 62.071 66.667 0.00 0.00 0.00 4.16
119 120 4.821589 GGCGGCTCCTTCTCGTGG 62.822 72.222 0.00 0.00 0.00 4.94
120 121 4.821589 GGGCGGCTCCTTCTCGTG 62.822 72.222 9.56 0.00 34.39 4.35
199 200 3.151022 CTCCGGTGCTCCCTCTCC 61.151 72.222 0.00 0.00 0.00 3.71
200 201 3.151022 CCTCCGGTGCTCCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
201 202 4.787280 CCCTCCGGTGCTCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
202 203 4.779733 TCCCTCCGGTGCTCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
203 204 4.787280 CTCCCTCCGGTGCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
209 210 2.873557 TAGAAGCCCTCCCTCCGGTG 62.874 65.000 0.00 0.00 0.00 4.94
210 211 2.591193 CTAGAAGCCCTCCCTCCGGT 62.591 65.000 0.00 0.00 0.00 5.28
211 212 1.834822 CTAGAAGCCCTCCCTCCGG 60.835 68.421 0.00 0.00 0.00 5.14
212 213 1.834822 CCTAGAAGCCCTCCCTCCG 60.835 68.421 0.00 0.00 0.00 4.63
213 214 2.144078 GCCTAGAAGCCCTCCCTCC 61.144 68.421 0.00 0.00 0.00 4.30
214 215 2.503382 CGCCTAGAAGCCCTCCCTC 61.503 68.421 0.00 0.00 0.00 4.30
215 216 2.444895 CGCCTAGAAGCCCTCCCT 60.445 66.667 0.00 0.00 0.00 4.20
216 217 3.551407 CCGCCTAGAAGCCCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
217 218 4.243008 GCCGCCTAGAAGCCCTCC 62.243 72.222 0.00 0.00 0.00 4.30
218 219 4.593864 CGCCGCCTAGAAGCCCTC 62.594 72.222 0.00 0.00 0.00 4.30
275 276 2.443781 GACCTTTCCCCAACCCCC 59.556 66.667 0.00 0.00 0.00 5.40
276 277 2.443781 GGACCTTTCCCCAACCCC 59.556 66.667 0.00 0.00 35.57 4.95
284 285 2.263852 GACCGTCGGGACCTTTCC 59.736 66.667 17.28 0.00 41.95 3.13
285 286 2.263852 GGACCGTCGGGACCTTTC 59.736 66.667 17.28 2.26 43.80 2.62
286 287 3.316760 GGGACCGTCGGGACCTTT 61.317 66.667 22.62 0.00 46.05 3.11
290 291 4.203076 CATCGGGACCGTCGGGAC 62.203 72.222 17.28 9.15 40.74 4.46
291 292 4.746309 ACATCGGGACCGTCGGGA 62.746 66.667 17.28 3.07 40.74 5.14
292 293 4.203076 GACATCGGGACCGTCGGG 62.203 72.222 17.28 0.00 40.74 5.14
293 294 3.445687 TGACATCGGGACCGTCGG 61.446 66.667 10.48 10.48 40.74 4.79
294 295 2.202570 GTGACATCGGGACCGTCG 60.203 66.667 10.90 5.70 40.74 5.12
295 296 0.527817 GATGTGACATCGGGACCGTC 60.528 60.000 10.11 1.82 40.74 4.79
296 297 0.970937 AGATGTGACATCGGGACCGT 60.971 55.000 18.85 0.00 40.74 4.83
297 298 1.029681 TAGATGTGACATCGGGACCG 58.970 55.000 18.85 3.96 41.35 4.79
298 299 2.483188 GGTTAGATGTGACATCGGGACC 60.483 54.545 22.44 22.44 0.00 4.46
299 300 2.431057 AGGTTAGATGTGACATCGGGAC 59.569 50.000 18.85 16.95 0.00 4.46
300 301 2.747177 AGGTTAGATGTGACATCGGGA 58.253 47.619 18.85 6.82 0.00 5.14
301 302 3.198068 CAAGGTTAGATGTGACATCGGG 58.802 50.000 18.85 2.62 0.00 5.14
302 303 3.861840 ACAAGGTTAGATGTGACATCGG 58.138 45.455 18.85 7.30 0.00 4.18
310 311 5.248477 ACATACTGGACACAAGGTTAGATGT 59.752 40.000 0.00 0.00 0.00 3.06
311 312 5.734720 ACATACTGGACACAAGGTTAGATG 58.265 41.667 0.00 0.00 0.00 2.90
312 313 6.374417 AACATACTGGACACAAGGTTAGAT 57.626 37.500 0.00 0.00 0.00 1.98
313 314 5.818678 AACATACTGGACACAAGGTTAGA 57.181 39.130 0.00 0.00 0.00 2.10
314 315 5.763204 ACAAACATACTGGACACAAGGTTAG 59.237 40.000 0.00 0.00 0.00 2.34
315 316 5.529430 CACAAACATACTGGACACAAGGTTA 59.471 40.000 0.00 0.00 0.00 2.85
316 317 4.338118 CACAAACATACTGGACACAAGGTT 59.662 41.667 0.00 0.00 0.00 3.50
317 318 3.882888 CACAAACATACTGGACACAAGGT 59.117 43.478 0.00 0.00 0.00 3.50
318 319 3.253188 CCACAAACATACTGGACACAAGG 59.747 47.826 0.00 0.00 0.00 3.61
319 320 3.882888 ACCACAAACATACTGGACACAAG 59.117 43.478 0.00 0.00 0.00 3.16
320 321 3.892284 ACCACAAACATACTGGACACAA 58.108 40.909 0.00 0.00 0.00 3.33
321 322 3.569194 ACCACAAACATACTGGACACA 57.431 42.857 0.00 0.00 0.00 3.72
322 323 4.911514 AAACCACAAACATACTGGACAC 57.088 40.909 0.00 0.00 0.00 3.67
323 324 7.589958 AAATAAACCACAAACATACTGGACA 57.410 32.000 0.00 0.00 0.00 4.02
324 325 8.880878 AAAAATAAACCACAAACATACTGGAC 57.119 30.769 0.00 0.00 0.00 4.02
364 365 3.579709 TCGCAGCAACAAGAAACAAAAA 58.420 36.364 0.00 0.00 0.00 1.94
365 366 3.178267 CTCGCAGCAACAAGAAACAAAA 58.822 40.909 0.00 0.00 0.00 2.44
366 367 2.163412 ACTCGCAGCAACAAGAAACAAA 59.837 40.909 0.00 0.00 0.00 2.83
367 368 1.742831 ACTCGCAGCAACAAGAAACAA 59.257 42.857 0.00 0.00 0.00 2.83
368 369 1.378531 ACTCGCAGCAACAAGAAACA 58.621 45.000 0.00 0.00 0.00 2.83
369 370 2.475200 AACTCGCAGCAACAAGAAAC 57.525 45.000 0.00 0.00 0.00 2.78
370 371 4.829064 AATAACTCGCAGCAACAAGAAA 57.171 36.364 0.00 0.00 0.00 2.52
371 372 4.036262 ACAAATAACTCGCAGCAACAAGAA 59.964 37.500 0.00 0.00 0.00 2.52
372 373 3.563808 ACAAATAACTCGCAGCAACAAGA 59.436 39.130 0.00 0.00 0.00 3.02
373 374 3.888934 ACAAATAACTCGCAGCAACAAG 58.111 40.909 0.00 0.00 0.00 3.16
374 375 3.980646 ACAAATAACTCGCAGCAACAA 57.019 38.095 0.00 0.00 0.00 2.83
375 376 3.435327 CCTACAAATAACTCGCAGCAACA 59.565 43.478 0.00 0.00 0.00 3.33
376 377 3.682858 TCCTACAAATAACTCGCAGCAAC 59.317 43.478 0.00 0.00 0.00 4.17
377 378 3.932710 CTCCTACAAATAACTCGCAGCAA 59.067 43.478 0.00 0.00 0.00 3.91
378 379 3.056107 ACTCCTACAAATAACTCGCAGCA 60.056 43.478 0.00 0.00 0.00 4.41
379 380 3.522553 ACTCCTACAAATAACTCGCAGC 58.477 45.455 0.00 0.00 0.00 5.25
380 381 7.033791 TCTAAACTCCTACAAATAACTCGCAG 58.966 38.462 0.00 0.00 0.00 5.18
381 382 6.927416 TCTAAACTCCTACAAATAACTCGCA 58.073 36.000 0.00 0.00 0.00 5.10
382 383 7.491696 ACATCTAAACTCCTACAAATAACTCGC 59.508 37.037 0.00 0.00 0.00 5.03
383 384 8.808529 CACATCTAAACTCCTACAAATAACTCG 58.191 37.037 0.00 0.00 0.00 4.18
384 385 9.871238 TCACATCTAAACTCCTACAAATAACTC 57.129 33.333 0.00 0.00 0.00 3.01
385 386 9.654663 GTCACATCTAAACTCCTACAAATAACT 57.345 33.333 0.00 0.00 0.00 2.24
386 387 9.431887 TGTCACATCTAAACTCCTACAAATAAC 57.568 33.333 0.00 0.00 0.00 1.89
388 389 9.817809 GATGTCACATCTAAACTCCTACAAATA 57.182 33.333 10.81 0.00 0.00 1.40
389 390 7.770897 GGATGTCACATCTAAACTCCTACAAAT 59.229 37.037 17.46 0.00 0.00 2.32
390 391 7.038302 AGGATGTCACATCTAAACTCCTACAAA 60.038 37.037 17.46 0.00 30.26 2.83
391 392 6.440647 AGGATGTCACATCTAAACTCCTACAA 59.559 38.462 17.46 0.00 30.26 2.41
392 393 5.958380 AGGATGTCACATCTAAACTCCTACA 59.042 40.000 17.46 0.00 30.26 2.74
393 394 6.472686 AGGATGTCACATCTAAACTCCTAC 57.527 41.667 17.46 0.00 30.26 3.18
394 395 8.603898 TTAAGGATGTCACATCTAAACTCCTA 57.396 34.615 17.46 0.00 31.77 2.94
395 396 7.496346 TTAAGGATGTCACATCTAAACTCCT 57.504 36.000 17.46 2.78 33.37 3.69
396 397 8.561738 TTTTAAGGATGTCACATCTAAACTCC 57.438 34.615 17.46 0.18 0.00 3.85
424 425 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
425 426 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
426 427 9.208022 CAACAGTTTGTCTAATTCACATCTAGA 57.792 33.333 0.00 0.00 0.00 2.43
427 428 8.993121 ACAACAGTTTGTCTAATTCACATCTAG 58.007 33.333 0.00 0.00 42.67 2.43
428 429 8.902540 ACAACAGTTTGTCTAATTCACATCTA 57.097 30.769 0.00 0.00 42.67 1.98
429 430 7.807977 ACAACAGTTTGTCTAATTCACATCT 57.192 32.000 0.00 0.00 42.67 2.90
430 431 8.128582 TCAACAACAGTTTGTCTAATTCACATC 58.871 33.333 0.00 0.00 45.69 3.06
431 432 7.995289 TCAACAACAGTTTGTCTAATTCACAT 58.005 30.769 0.00 0.00 45.69 3.21
432 433 7.384439 TCAACAACAGTTTGTCTAATTCACA 57.616 32.000 0.00 0.00 45.69 3.58
433 434 8.682128 TTTCAACAACAGTTTGTCTAATTCAC 57.318 30.769 0.00 0.00 45.69 3.18
434 435 7.487829 GCTTTCAACAACAGTTTGTCTAATTCA 59.512 33.333 0.00 0.00 45.69 2.57
435 436 7.043391 GGCTTTCAACAACAGTTTGTCTAATTC 60.043 37.037 0.00 0.00 45.69 2.17
436 437 6.756542 GGCTTTCAACAACAGTTTGTCTAATT 59.243 34.615 0.00 0.00 45.69 1.40
437 438 6.273071 GGCTTTCAACAACAGTTTGTCTAAT 58.727 36.000 0.00 0.00 45.69 1.73
438 439 5.646606 GGCTTTCAACAACAGTTTGTCTAA 58.353 37.500 0.00 0.00 45.69 2.10
439 440 4.201871 CGGCTTTCAACAACAGTTTGTCTA 60.202 41.667 0.00 0.00 45.69 2.59
440 441 3.427503 CGGCTTTCAACAACAGTTTGTCT 60.428 43.478 0.00 0.00 45.69 3.41
441 442 2.851824 CGGCTTTCAACAACAGTTTGTC 59.148 45.455 0.00 0.00 45.69 3.18
443 444 1.587946 GCGGCTTTCAACAACAGTTTG 59.412 47.619 0.00 0.00 38.83 2.93
444 445 1.470805 GGCGGCTTTCAACAACAGTTT 60.471 47.619 0.00 0.00 0.00 2.66
445 446 0.102300 GGCGGCTTTCAACAACAGTT 59.898 50.000 0.00 0.00 0.00 3.16
446 447 1.733526 GGCGGCTTTCAACAACAGT 59.266 52.632 0.00 0.00 0.00 3.55
447 448 1.007387 GGGCGGCTTTCAACAACAG 60.007 57.895 9.56 0.00 0.00 3.16
448 449 1.754621 TGGGCGGCTTTCAACAACA 60.755 52.632 9.56 0.00 0.00 3.33
449 450 1.299850 GTGGGCGGCTTTCAACAAC 60.300 57.895 9.56 0.00 0.00 3.32
450 451 2.494530 GGTGGGCGGCTTTCAACAA 61.495 57.895 9.56 0.00 0.00 2.83
451 452 2.909965 GGTGGGCGGCTTTCAACA 60.910 61.111 9.56 0.00 0.00 3.33
452 453 0.963355 TATGGTGGGCGGCTTTCAAC 60.963 55.000 9.56 1.22 0.00 3.18
453 454 0.033601 ATATGGTGGGCGGCTTTCAA 60.034 50.000 9.56 0.00 0.00 2.69
454 455 0.751277 CATATGGTGGGCGGCTTTCA 60.751 55.000 9.56 5.02 0.00 2.69
455 456 0.465460 TCATATGGTGGGCGGCTTTC 60.465 55.000 9.56 0.00 0.00 2.62
456 457 0.751643 GTCATATGGTGGGCGGCTTT 60.752 55.000 9.56 0.00 0.00 3.51
457 458 1.152963 GTCATATGGTGGGCGGCTT 60.153 57.895 9.56 0.00 0.00 4.35
458 459 2.374525 TGTCATATGGTGGGCGGCT 61.375 57.895 9.56 0.00 0.00 5.52
459 460 2.186826 GTGTCATATGGTGGGCGGC 61.187 63.158 0.00 0.00 0.00 6.53
460 461 0.756294 TAGTGTCATATGGTGGGCGG 59.244 55.000 2.13 0.00 0.00 6.13
461 462 2.612212 GTTTAGTGTCATATGGTGGGCG 59.388 50.000 2.13 0.00 0.00 6.13
462 463 3.377172 GTGTTTAGTGTCATATGGTGGGC 59.623 47.826 2.13 0.00 0.00 5.36
463 464 4.843728 AGTGTTTAGTGTCATATGGTGGG 58.156 43.478 2.13 0.00 0.00 4.61
464 465 6.876789 TGTTAGTGTTTAGTGTCATATGGTGG 59.123 38.462 2.13 0.00 0.00 4.61
465 466 7.899178 TGTTAGTGTTTAGTGTCATATGGTG 57.101 36.000 2.13 0.00 0.00 4.17
466 467 8.911918 TTTGTTAGTGTTTAGTGTCATATGGT 57.088 30.769 2.13 0.00 0.00 3.55
471 472 8.500773 CGGTTATTTGTTAGTGTTTAGTGTCAT 58.499 33.333 0.00 0.00 0.00 3.06
472 473 7.495279 ACGGTTATTTGTTAGTGTTTAGTGTCA 59.505 33.333 0.00 0.00 0.00 3.58
473 474 7.854534 ACGGTTATTTGTTAGTGTTTAGTGTC 58.145 34.615 0.00 0.00 0.00 3.67
474 475 7.495279 TGACGGTTATTTGTTAGTGTTTAGTGT 59.505 33.333 0.00 0.00 0.00 3.55
475 476 7.853524 TGACGGTTATTTGTTAGTGTTTAGTG 58.146 34.615 0.00 0.00 0.00 2.74
476 477 7.927629 TCTGACGGTTATTTGTTAGTGTTTAGT 59.072 33.333 0.00 0.00 0.00 2.24
477 478 8.301730 TCTGACGGTTATTTGTTAGTGTTTAG 57.698 34.615 0.00 0.00 0.00 1.85
478 479 8.143193 TCTCTGACGGTTATTTGTTAGTGTTTA 58.857 33.333 0.00 0.00 0.00 2.01
479 480 6.987992 TCTCTGACGGTTATTTGTTAGTGTTT 59.012 34.615 0.00 0.00 0.00 2.83
480 481 6.518493 TCTCTGACGGTTATTTGTTAGTGTT 58.482 36.000 0.00 0.00 0.00 3.32
481 482 6.015688 TCTCTCTGACGGTTATTTGTTAGTGT 60.016 38.462 0.00 0.00 0.00 3.55
482 483 6.387465 TCTCTCTGACGGTTATTTGTTAGTG 58.613 40.000 0.00 0.00 0.00 2.74
483 484 6.585695 TCTCTCTGACGGTTATTTGTTAGT 57.414 37.500 0.00 0.00 0.00 2.24
484 485 6.310711 GGTTCTCTCTGACGGTTATTTGTTAG 59.689 42.308 0.00 0.00 0.00 2.34
492 493 4.566004 CAAATGGTTCTCTCTGACGGTTA 58.434 43.478 0.00 0.00 0.00 2.85
496 497 1.391485 CGCAAATGGTTCTCTCTGACG 59.609 52.381 0.00 0.00 0.00 4.35
500 501 5.923204 AGATAATCGCAAATGGTTCTCTCT 58.077 37.500 0.00 0.00 0.00 3.10
514 515 5.923684 CCTCCTCTTAGACAAAGATAATCGC 59.076 44.000 0.00 0.00 43.32 4.58
528 529 4.822026 ACGTTTCATCAACCTCCTCTTAG 58.178 43.478 0.00 0.00 30.65 2.18
534 535 1.076332 CCGACGTTTCATCAACCTCC 58.924 55.000 0.00 0.00 30.65 4.30
535 536 1.993370 CTCCGACGTTTCATCAACCTC 59.007 52.381 0.00 0.00 30.65 3.85
536 537 1.939838 GCTCCGACGTTTCATCAACCT 60.940 52.381 0.00 0.00 30.65 3.50
539 540 2.991190 GTTAGCTCCGACGTTTCATCAA 59.009 45.455 0.00 0.00 0.00 2.57
551 552 0.105039 CCTAAGGCAGGTTAGCTCCG 59.895 60.000 0.00 0.00 39.91 4.63
582 583 7.922505 TGCATTTTCATGTTTGTACACTAAC 57.077 32.000 0.00 0.00 37.03 2.34
608 609 6.804534 TTCTTCATTGTAAGTTGCAAAACG 57.195 33.333 10.53 3.13 0.00 3.60
638 642 0.792640 GACTGCCAACATCTGTGTCG 59.207 55.000 0.00 0.00 37.67 4.35
670 674 6.038714 CAGCTAGGGAGGTTAAAATTGCTTAG 59.961 42.308 0.00 0.00 0.00 2.18
672 676 4.706962 CAGCTAGGGAGGTTAAAATTGCTT 59.293 41.667 0.00 0.00 0.00 3.91
674 678 3.381590 CCAGCTAGGGAGGTTAAAATTGC 59.618 47.826 0.00 0.00 0.00 3.56
675 679 4.855340 TCCAGCTAGGGAGGTTAAAATTG 58.145 43.478 0.00 0.00 38.24 2.32
678 682 5.506708 GAATTCCAGCTAGGGAGGTTAAAA 58.493 41.667 0.00 0.00 38.42 1.52
698 707 0.179062 GCGAGAGACTGCCATGGAAT 60.179 55.000 18.40 0.00 0.00 3.01
699 708 1.219124 GCGAGAGACTGCCATGGAA 59.781 57.895 18.40 3.09 0.00 3.53
712 721 2.028733 GGTTTTAACGCCCGCGAGA 61.029 57.895 17.16 0.00 42.83 4.04
716 725 0.662077 CACAAGGTTTTAACGCCCGC 60.662 55.000 0.00 0.00 0.00 6.13
736 745 0.885879 GTTAGGCCCAAAGGTTTCCG 59.114 55.000 0.00 0.00 34.57 4.30
737 746 0.885879 CGTTAGGCCCAAAGGTTTCC 59.114 55.000 0.00 0.00 34.57 3.13
751 760 8.818141 TCCTTTCTTATATTCTCATGCGTTAG 57.182 34.615 0.00 0.00 0.00 2.34
778 790 5.836024 TGGAGTTATTTGGTCAGGTAGTT 57.164 39.130 0.00 0.00 0.00 2.24
784 796 6.824305 AGAAACATGGAGTTATTTGGTCAG 57.176 37.500 0.00 0.00 40.26 3.51
789 801 7.921786 TCCACTAGAAACATGGAGTTATTTG 57.078 36.000 0.00 0.00 40.26 2.32
801 841 8.318412 TGAGCAGTTATTAATCCACTAGAAACA 58.682 33.333 0.00 0.00 0.00 2.83
804 844 7.769044 GGTTGAGCAGTTATTAATCCACTAGAA 59.231 37.037 0.00 0.00 0.00 2.10
818 862 3.253188 GCAAACATCTGGTTGAGCAGTTA 59.747 43.478 12.03 0.00 45.19 2.24
829 873 3.502237 GCAACTGGCAAACATCTGG 57.498 52.632 0.00 0.00 43.97 3.86
839 883 2.570181 GCTGATGTGGCAACTGGC 59.430 61.111 0.00 0.00 43.74 4.85
840 884 1.592400 CTGGCTGATGTGGCAACTGG 61.592 60.000 0.00 0.00 41.92 4.00
841 885 0.892358 ACTGGCTGATGTGGCAACTG 60.892 55.000 0.00 0.00 41.92 3.16
842 886 0.692476 TACTGGCTGATGTGGCAACT 59.308 50.000 0.00 0.00 41.92 3.16
843 887 0.804989 GTACTGGCTGATGTGGCAAC 59.195 55.000 0.00 0.00 41.92 4.17
855 899 2.340337 ACGAAAACCATACGTACTGGC 58.660 47.619 18.31 6.63 38.47 4.85
868 912 5.003402 CGAAAATGCATGGTCATACGAAAAC 59.997 40.000 0.00 0.00 0.00 2.43
872 916 2.031560 GCGAAAATGCATGGTCATACGA 59.968 45.455 0.00 0.00 34.15 3.43
891 935 1.330521 CGAGGGGTCATACAAAATGCG 59.669 52.381 0.00 0.00 0.00 4.73
892 936 1.065551 GCGAGGGGTCATACAAAATGC 59.934 52.381 0.00 0.00 0.00 3.56
893 937 1.676006 GGCGAGGGGTCATACAAAATG 59.324 52.381 0.00 0.00 0.00 2.32
894 938 1.283613 TGGCGAGGGGTCATACAAAAT 59.716 47.619 0.00 0.00 0.00 1.82
895 939 0.693622 TGGCGAGGGGTCATACAAAA 59.306 50.000 0.00 0.00 0.00 2.44
896 940 0.693622 TTGGCGAGGGGTCATACAAA 59.306 50.000 0.00 0.00 0.00 2.83
897 941 0.035820 GTTGGCGAGGGGTCATACAA 60.036 55.000 0.00 0.00 0.00 2.41
899 943 0.743345 GTGTTGGCGAGGGGTCATAC 60.743 60.000 0.00 0.00 0.00 2.39
901 945 2.351276 GTGTTGGCGAGGGGTCAT 59.649 61.111 0.00 0.00 0.00 3.06
903 947 2.668550 GTGTGTTGGCGAGGGGTC 60.669 66.667 0.00 0.00 0.00 4.46
904 948 4.265056 GGTGTGTTGGCGAGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
905 949 4.263572 TGGTGTGTTGGCGAGGGG 62.264 66.667 0.00 0.00 0.00 4.79
906 950 2.978010 GTGGTGTGTTGGCGAGGG 60.978 66.667 0.00 0.00 0.00 4.30
907 951 2.203139 TGTGGTGTGTTGGCGAGG 60.203 61.111 0.00 0.00 0.00 4.63
908 952 2.881266 CGTGTGGTGTGTTGGCGAG 61.881 63.158 0.00 0.00 0.00 5.03
909 953 2.892914 CGTGTGGTGTGTTGGCGA 60.893 61.111 0.00 0.00 0.00 5.54
910 954 4.605967 GCGTGTGGTGTGTTGGCG 62.606 66.667 0.00 0.00 0.00 5.69
911 955 4.605967 CGCGTGTGGTGTGTTGGC 62.606 66.667 0.00 0.00 0.00 4.52
912 956 2.881266 CTCGCGTGTGGTGTGTTGG 61.881 63.158 5.77 0.00 0.00 3.77
913 957 1.821241 CTCTCGCGTGTGGTGTGTTG 61.821 60.000 5.77 0.00 0.00 3.33
914 958 1.591594 CTCTCGCGTGTGGTGTGTT 60.592 57.895 5.77 0.00 0.00 3.32
915 959 2.027605 CTCTCGCGTGTGGTGTGT 59.972 61.111 5.77 0.00 0.00 3.72
916 960 3.406361 GCTCTCGCGTGTGGTGTG 61.406 66.667 5.77 0.00 0.00 3.82
917 961 3.911698 TGCTCTCGCGTGTGGTGT 61.912 61.111 5.77 0.00 39.65 4.16
918 962 3.406361 GTGCTCTCGCGTGTGGTG 61.406 66.667 5.77 0.00 39.65 4.17
919 963 3.439513 TTGTGCTCTCGCGTGTGGT 62.440 57.895 5.77 0.00 39.65 4.16
920 964 2.661537 TTGTGCTCTCGCGTGTGG 60.662 61.111 5.77 2.79 39.65 4.17
921 965 1.761244 TTGTTGTGCTCTCGCGTGTG 61.761 55.000 5.77 5.86 39.65 3.82
922 966 1.490693 CTTGTTGTGCTCTCGCGTGT 61.491 55.000 5.77 0.00 39.65 4.49
923 967 1.202568 CTTGTTGTGCTCTCGCGTG 59.797 57.895 5.77 3.13 39.65 5.34
958 1002 9.193133 CATAAAAACTCGCGATATATATAGGGG 57.807 37.037 10.36 10.51 0.00 4.79
968 1021 4.033587 GGCAACTCATAAAAACTCGCGATA 59.966 41.667 10.36 0.00 0.00 2.92
969 1022 3.181510 GGCAACTCATAAAAACTCGCGAT 60.182 43.478 10.36 0.00 0.00 4.58
970 1023 2.158841 GGCAACTCATAAAAACTCGCGA 59.841 45.455 9.26 9.26 0.00 5.87
972 1025 2.227865 TGGGCAACTCATAAAAACTCGC 59.772 45.455 0.00 0.00 0.00 5.03
973 1026 3.670627 GCTGGGCAACTCATAAAAACTCG 60.671 47.826 0.00 0.00 0.00 4.18
975 1028 2.228822 CGCTGGGCAACTCATAAAAACT 59.771 45.455 0.00 0.00 0.00 2.66
976 1029 2.227865 TCGCTGGGCAACTCATAAAAAC 59.772 45.455 0.00 0.00 0.00 2.43
978 1031 2.192664 TCGCTGGGCAACTCATAAAA 57.807 45.000 0.00 0.00 0.00 1.52
980 1033 2.192664 TTTCGCTGGGCAACTCATAA 57.807 45.000 0.00 0.00 0.00 1.90
981 1034 2.192664 TTTTCGCTGGGCAACTCATA 57.807 45.000 0.00 0.00 0.00 2.15
982 1035 1.203052 CATTTTCGCTGGGCAACTCAT 59.797 47.619 0.00 0.00 0.00 2.90
983 1036 0.597568 CATTTTCGCTGGGCAACTCA 59.402 50.000 0.00 0.00 0.00 3.41
989 1044 1.446618 CAAGCCATTTTCGCTGGGC 60.447 57.895 0.00 0.00 46.77 5.36
996 1051 5.654209 AGAGGGAATAGAACAAGCCATTTTC 59.346 40.000 0.00 0.00 0.00 2.29
1003 1061 3.118445 AGCAGAGAGGGAATAGAACAAGC 60.118 47.826 0.00 0.00 0.00 4.01
1007 1065 4.588528 AGATGAGCAGAGAGGGAATAGAAC 59.411 45.833 0.00 0.00 0.00 3.01
1008 1066 4.588106 CAGATGAGCAGAGAGGGAATAGAA 59.412 45.833 0.00 0.00 0.00 2.10
1009 1067 4.151121 CAGATGAGCAGAGAGGGAATAGA 58.849 47.826 0.00 0.00 0.00 1.98
1011 1069 2.632028 GCAGATGAGCAGAGAGGGAATA 59.368 50.000 0.00 0.00 0.00 1.75
1017 1075 0.531090 GCAGGCAGATGAGCAGAGAG 60.531 60.000 0.00 0.00 35.83 3.20
1027 1085 1.004511 AGCAAGAAGAAGCAGGCAGAT 59.995 47.619 0.00 0.00 0.00 2.90
1076 1134 2.579201 CACCGTGGGAGTAGCTGG 59.421 66.667 0.00 0.00 0.00 4.85
1081 1139 2.934570 GCGTTCCACCGTGGGAGTA 61.935 63.158 17.76 0.00 38.32 2.59
1122 1180 2.112815 CGGCGGAACCCTTGAATCC 61.113 63.158 0.00 0.00 33.26 3.01
1175 1233 4.887071 TCTGTTGCAGAGGTTAATTTGTGT 59.113 37.500 0.00 0.00 35.39 3.72
1217 1279 8.095792 TGACCAACTCATTATTTCATTTTGCAT 58.904 29.630 0.00 0.00 0.00 3.96
1218 1280 7.440198 TGACCAACTCATTATTTCATTTTGCA 58.560 30.769 0.00 0.00 0.00 4.08
1219 1281 7.887996 TGACCAACTCATTATTTCATTTTGC 57.112 32.000 0.00 0.00 0.00 3.68
1244 1308 1.606994 CCGGGAATGACGAGACAACAA 60.607 52.381 0.00 0.00 0.00 2.83
1245 1309 0.037697 CCGGGAATGACGAGACAACA 60.038 55.000 0.00 0.00 0.00 3.33
1248 1312 1.613317 ATGCCGGGAATGACGAGACA 61.613 55.000 0.00 0.00 0.00 3.41
1261 1325 3.510719 CAAGTTAATTGGTCAATGCCGG 58.489 45.455 0.00 0.00 35.08 6.13
1263 1327 3.055891 AGGCAAGTTAATTGGTCAATGCC 60.056 43.478 13.01 13.01 39.47 4.40
1264 1328 3.928375 CAGGCAAGTTAATTGGTCAATGC 59.072 43.478 0.00 0.00 39.47 3.56
1266 1330 6.010219 AGTACAGGCAAGTTAATTGGTCAAT 58.990 36.000 0.00 0.00 39.47 2.57
1267 1331 5.381757 AGTACAGGCAAGTTAATTGGTCAA 58.618 37.500 0.00 0.00 39.47 3.18
1269 1333 5.959618 AAGTACAGGCAAGTTAATTGGTC 57.040 39.130 0.00 0.00 39.47 4.02
1270 1334 6.724893 AAAAGTACAGGCAAGTTAATTGGT 57.275 33.333 0.00 0.00 39.47 3.67
1271 1335 7.206687 TGAAAAAGTACAGGCAAGTTAATTGG 58.793 34.615 0.00 0.00 39.47 3.16
1272 1336 7.382218 CCTGAAAAAGTACAGGCAAGTTAATTG 59.618 37.037 0.00 0.00 45.30 2.32
1273 1337 7.433680 CCTGAAAAAGTACAGGCAAGTTAATT 58.566 34.615 0.00 0.00 45.30 1.40
1274 1338 6.981722 CCTGAAAAAGTACAGGCAAGTTAAT 58.018 36.000 0.00 0.00 45.30 1.40
1275 1339 6.385649 CCTGAAAAAGTACAGGCAAGTTAA 57.614 37.500 0.00 0.00 45.30 2.01
1284 1348 4.152402 CCGTCATCACCTGAAAAAGTACAG 59.848 45.833 0.00 0.00 35.07 2.74
1285 1349 4.062293 CCGTCATCACCTGAAAAAGTACA 58.938 43.478 0.00 0.00 35.07 2.90
1286 1350 3.435671 CCCGTCATCACCTGAAAAAGTAC 59.564 47.826 0.00 0.00 35.07 2.73
1288 1352 2.504367 CCCGTCATCACCTGAAAAAGT 58.496 47.619 0.00 0.00 35.07 2.66
1289 1353 1.812571 CCCCGTCATCACCTGAAAAAG 59.187 52.381 0.00 0.00 35.07 2.27
1641 1714 1.911766 GGAGGTGGACTTGGACGGA 60.912 63.158 0.00 0.00 0.00 4.69
1743 1816 4.359475 GCATTTTGCAGCCCGTTT 57.641 50.000 0.00 0.00 44.26 3.60
1800 1876 9.582431 CAAAAGAACCTGAACTTATCTACGATA 57.418 33.333 0.00 0.00 0.00 2.92
1802 1878 6.367969 GCAAAAGAACCTGAACTTATCTACGA 59.632 38.462 0.00 0.00 0.00 3.43
1806 1882 5.635120 AGGCAAAAGAACCTGAACTTATCT 58.365 37.500 0.00 0.00 34.07 1.98
2070 2161 1.006571 GAAACCGACGAGCTGGACA 60.007 57.895 1.44 0.00 0.00 4.02
2107 2198 0.181114 TTGATGGGCGGGATCTTCAG 59.819 55.000 0.00 0.00 0.00 3.02
2109 2200 1.025041 GTTTGATGGGCGGGATCTTC 58.975 55.000 0.00 0.00 0.00 2.87
2151 2242 1.817941 GGTGAACGTGGTGTGCAGT 60.818 57.895 0.00 0.00 36.55 4.40
2208 2299 0.259938 GCCTCATCCACCCCTTGAAT 59.740 55.000 0.00 0.00 0.00 2.57
2248 2345 0.038618 CACGTGTCGAGATCACCCAA 60.039 55.000 7.58 0.00 32.86 4.12
2256 2353 0.947660 AGTCGTAGCACGTGTCGAGA 60.948 55.000 23.95 14.44 43.14 4.04
2284 2381 0.182061 GGCAGGATCATGGAGCTCAA 59.818 55.000 17.19 4.05 0.00 3.02
2361 2458 1.553248 TCGGGGTCCTTGAAGTACATG 59.447 52.381 0.00 0.00 0.00 3.21
2371 2468 0.767060 AAGTGGTTCTCGGGGTCCTT 60.767 55.000 0.00 0.00 0.00 3.36
2436 2533 3.124921 CCGATCACCGCAACCACC 61.125 66.667 0.00 0.00 36.84 4.61
2566 2711 1.272212 GGCAAAATGAGAAGCCCGAAA 59.728 47.619 0.00 0.00 41.25 3.46
2568 2713 2.566824 GGCAAAATGAGAAGCCCGA 58.433 52.632 0.00 0.00 41.25 5.14
2579 2727 4.312443 CTCATTTGTGAAGCAGGCAAAAT 58.688 39.130 0.00 0.00 36.00 1.82
2629 2777 4.093998 ACTCCACAGTTACATACGAGTACG 59.906 45.833 0.00 0.00 45.75 3.67
2659 2807 7.060421 TGTTTATTCATTCCTGGGAAGGATAC 58.940 38.462 15.85 12.19 43.07 2.24
2725 2873 3.103738 ACGGATAGAAATTCGAACGTCG 58.896 45.455 0.00 0.00 36.05 5.12
2913 3062 1.505538 TCCAAATGGGAAAGGGGAACA 59.494 47.619 0.00 0.00 44.80 3.18
3048 3225 1.800713 GGGCGACGAGAACGAAGAC 60.801 63.158 0.00 0.00 42.66 3.01
3218 3416 6.546403 TGACACAACTAGATCCTACCAGATAC 59.454 42.308 0.00 0.00 0.00 2.24
3397 3602 0.176680 CACAAGCTACAGGATCCGCT 59.823 55.000 5.98 6.04 0.00 5.52
3471 3676 7.786503 CCGAAATGGACAACATGGGACAAAG 62.787 48.000 0.00 0.00 41.85 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.