Multiple sequence alignment - TraesCS7B01G190700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G190700 chr7B 100.000 3655 0 0 1 3655 327675280 327671626 0.000000e+00 6750.0
1 TraesCS7B01G190700 chr7B 100.000 646 0 0 3877 4522 327671404 327670759 0.000000e+00 1194.0
2 TraesCS7B01G190700 chr7B 82.946 645 95 12 956 1593 328493957 328493321 6.560000e-158 568.0
3 TraesCS7B01G190700 chr7B 87.117 489 63 0 1105 1593 328166166 328165678 5.110000e-154 555.0
4 TraesCS7B01G190700 chr7B 84.889 225 18 6 857 1081 328166363 328166155 3.540000e-51 213.0
5 TraesCS7B01G190700 chr7B 86.364 132 9 2 651 781 328179605 328179482 7.890000e-28 135.0
6 TraesCS7B01G190700 chr7D 94.395 2819 98 22 863 3644 185222629 185219834 0.000000e+00 4276.0
7 TraesCS7B01G190700 chr7D 90.953 829 52 12 2667 3487 185675374 185674561 0.000000e+00 1094.0
8 TraesCS7B01G190700 chr7D 93.827 648 20 8 3892 4521 185219472 185218827 0.000000e+00 957.0
9 TraesCS7B01G190700 chr7D 90.708 678 59 1 916 1593 185368674 185368001 0.000000e+00 900.0
10 TraesCS7B01G190700 chr7D 82.893 643 97 11 957 1593 185766136 185765501 2.360000e-157 566.0
11 TraesCS7B01G190700 chr7D 90.025 401 35 3 374 772 185243315 185242918 8.670000e-142 514.0
12 TraesCS7B01G190700 chr7D 84.123 422 64 1 3097 3518 185366228 185365810 5.450000e-109 405.0
13 TraesCS7B01G190700 chr7D 91.319 288 20 5 2246 2533 185686297 185686015 5.490000e-104 388.0
14 TraesCS7B01G190700 chr7D 83.373 421 67 1 3097 3517 185763807 185763390 1.970000e-103 387.0
15 TraesCS7B01G190700 chr7D 88.629 299 23 3 471 767 185369650 185369361 2.000000e-93 353.0
16 TraesCS7B01G190700 chr7D 86.842 304 38 1 2389 2690 185375032 185374729 5.600000e-89 339.0
17 TraesCS7B01G190700 chr7D 83.768 345 51 3 2389 2731 185366860 185366519 5.640000e-84 322.0
18 TraesCS7B01G190700 chr7D 86.242 298 39 1 2395 2690 185764459 185764162 5.640000e-84 322.0
19 TraesCS7B01G190700 chr7D 93.431 137 8 1 2529 2664 185675550 185675414 7.670000e-48 202.0
20 TraesCS7B01G190700 chr7D 96.226 53 2 0 801 853 185368696 185368644 2.240000e-13 87.9
21 TraesCS7B01G190700 chr7A 92.791 2788 101 34 916 3655 192987628 192984893 0.000000e+00 3943.0
22 TraesCS7B01G190700 chr7A 90.455 681 57 4 916 1593 193504872 193504197 0.000000e+00 891.0
23 TraesCS7B01G190700 chr7A 88.934 732 63 4 862 1593 193380527 193379814 0.000000e+00 887.0
24 TraesCS7B01G190700 chr7A 90.175 570 21 11 3967 4521 192974080 192973531 0.000000e+00 710.0
25 TraesCS7B01G190700 chr7A 82.880 625 92 12 976 1593 193591216 193590600 8.550000e-152 547.0
26 TraesCS7B01G190700 chr7A 88.806 402 26 9 374 772 192988776 192988391 4.090000e-130 475.0
27 TraesCS7B01G190700 chr7A 83.146 445 70 4 3077 3519 193588805 193588364 7.050000e-108 401.0
28 TraesCS7B01G190700 chr7A 84.777 381 58 0 3139 3519 193377973 193377593 2.550000e-102 383.0
29 TraesCS7B01G190700 chr7A 83.478 345 52 3 2389 2731 193378641 193378300 2.630000e-82 316.0
30 TraesCS7B01G190700 chr7A 83.333 348 52 5 2387 2731 193589410 193589066 2.630000e-82 316.0
31 TraesCS7B01G190700 chr7A 94.792 96 5 0 3877 3972 192984496 192984401 2.820000e-32 150.0
32 TraesCS7B01G190700 chr7A 94.203 69 4 0 785 853 193380525 193380457 6.190000e-19 106.0
33 TraesCS7B01G190700 chr5D 89.920 377 29 5 1 374 462884952 462885322 1.140000e-130 477.0
34 TraesCS7B01G190700 chr1B 91.798 317 25 1 1 316 409237101 409237417 1.490000e-119 440.0
35 TraesCS7B01G190700 chr2D 92.283 311 21 3 1 310 179829021 179829329 5.370000e-119 438.0
36 TraesCS7B01G190700 chr2D 92.157 306 21 3 1 304 373915303 373915607 3.230000e-116 429.0
37 TraesCS7B01G190700 chr2D 90.221 317 29 2 1 316 481022985 481022670 3.260000e-111 412.0
38 TraesCS7B01G190700 chr6D 87.533 377 40 7 1 374 144685251 144684879 3.230000e-116 429.0
39 TraesCS7B01G190700 chr6D 90.196 306 28 2 1 304 317090045 317090350 9.110000e-107 398.0
40 TraesCS7B01G190700 chr4A 90.997 311 27 1 1 310 664029501 664029191 7.000000e-113 418.0
41 TraesCS7B01G190700 chr6B 89.905 317 30 2 1 316 654444928 654445243 1.510000e-109 407.0
42 TraesCS7B01G190700 chr6B 86.792 53 7 0 4468 4520 54219843 54219791 4.890000e-05 60.2
43 TraesCS7B01G190700 chr4B 77.778 171 34 4 3158 3326 661144483 661144651 8.000000e-18 102.0
44 TraesCS7B01G190700 chr5A 92.157 51 3 1 4203 4253 514437146 514437097 2.260000e-08 71.3
45 TraesCS7B01G190700 chr3B 92.157 51 3 1 4203 4253 487603905 487603856 2.260000e-08 71.3
46 TraesCS7B01G190700 chr2B 89.583 48 2 3 4477 4521 615257951 615257904 1.760000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G190700 chr7B 327670759 327675280 4521 True 3972.000000 6750 100.000000 1 4522 2 chr7B.!!$R3 4521
1 TraesCS7B01G190700 chr7B 328493321 328493957 636 True 568.000000 568 82.946000 956 1593 1 chr7B.!!$R2 637
2 TraesCS7B01G190700 chr7B 328165678 328166363 685 True 384.000000 555 86.003000 857 1593 2 chr7B.!!$R4 736
3 TraesCS7B01G190700 chr7D 185218827 185222629 3802 True 2616.500000 4276 94.111000 863 4521 2 chr7D.!!$R4 3658
4 TraesCS7B01G190700 chr7D 185674561 185675550 989 True 648.000000 1094 92.192000 2529 3487 2 chr7D.!!$R6 958
5 TraesCS7B01G190700 chr7D 185763390 185766136 2746 True 425.000000 566 84.169333 957 3517 3 chr7D.!!$R7 2560
6 TraesCS7B01G190700 chr7D 185365810 185369650 3840 True 413.580000 900 88.690800 471 3518 5 chr7D.!!$R5 3047
7 TraesCS7B01G190700 chr7A 192984401 192988776 4375 True 1522.666667 3943 92.129667 374 3972 3 chr7A.!!$R3 3598
8 TraesCS7B01G190700 chr7A 193504197 193504872 675 True 891.000000 891 90.455000 916 1593 1 chr7A.!!$R2 677
9 TraesCS7B01G190700 chr7A 192973531 192974080 549 True 710.000000 710 90.175000 3967 4521 1 chr7A.!!$R1 554
10 TraesCS7B01G190700 chr7A 193377593 193380527 2934 True 423.000000 887 87.848000 785 3519 4 chr7A.!!$R4 2734
11 TraesCS7B01G190700 chr7A 193588364 193591216 2852 True 421.333333 547 83.119667 976 3519 3 chr7A.!!$R5 2543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.025128 GAAACGCGCTACTGCTAAGC 59.975 55.0 5.73 0.0 36.97 3.09 F
351 352 0.038526 CCCTTATACCCGCGCTACTG 60.039 60.0 5.56 0.0 0.00 2.74 F
798 838 0.107945 GACCTGTCATCCTGGCTGTC 60.108 60.0 0.00 0.0 35.64 3.51 F
2323 3942 0.394216 TTGCTTCCATGGATCACCGG 60.394 55.0 17.06 0.0 39.42 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 2177 0.757935 TAGGGCGGCGTATCTTTCCT 60.758 55.00 9.37 7.06 0.00 3.36 R
2323 3942 0.606604 TACTCTTTCACCGCCCAGTC 59.393 55.00 0.00 0.00 0.00 3.51 R
2750 4478 3.831333 TGGCACACAACCACAATATGAAT 59.169 39.13 0.00 0.00 30.29 2.57 R
4321 6299 1.459450 TTATTTGACCAAGGGCGAGC 58.541 50.00 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.590234 AGCTATATCGTGGTTATGATGTGA 57.410 37.500 0.00 0.00 34.46 3.58
27 28 6.390721 AGCTATATCGTGGTTATGATGTGAC 58.609 40.000 0.00 0.00 34.46 3.67
28 29 5.286320 GCTATATCGTGGTTATGATGTGACG 59.714 44.000 0.00 0.00 34.46 4.35
29 30 3.793797 ATCGTGGTTATGATGTGACGA 57.206 42.857 0.00 0.00 39.85 4.20
30 31 2.871133 TCGTGGTTATGATGTGACGAC 58.129 47.619 0.00 0.00 31.34 4.34
31 32 2.229302 TCGTGGTTATGATGTGACGACA 59.771 45.455 0.00 0.00 36.22 4.35
32 33 3.119280 TCGTGGTTATGATGTGACGACAT 60.119 43.478 0.00 0.00 46.01 3.06
33 34 3.000222 CGTGGTTATGATGTGACGACATG 60.000 47.826 0.00 0.00 43.22 3.21
34 35 4.180817 GTGGTTATGATGTGACGACATGA 58.819 43.478 0.00 0.00 43.22 3.07
35 36 4.811024 GTGGTTATGATGTGACGACATGAT 59.189 41.667 0.00 0.00 43.22 2.45
36 37 5.294306 GTGGTTATGATGTGACGACATGATT 59.706 40.000 0.00 0.00 43.22 2.57
37 38 5.879777 TGGTTATGATGTGACGACATGATTT 59.120 36.000 0.00 0.00 43.22 2.17
38 39 7.011016 GTGGTTATGATGTGACGACATGATTTA 59.989 37.037 0.00 0.00 43.22 1.40
39 40 7.714813 TGGTTATGATGTGACGACATGATTTAT 59.285 33.333 0.00 0.00 43.22 1.40
40 41 8.011673 GGTTATGATGTGACGACATGATTTATG 58.988 37.037 0.00 0.00 43.22 1.90
64 65 9.668497 ATGTTGGATGATATGATGAGACTATTG 57.332 33.333 0.00 0.00 0.00 1.90
65 66 8.654094 TGTTGGATGATATGATGAGACTATTGT 58.346 33.333 0.00 0.00 0.00 2.71
66 67 8.933807 GTTGGATGATATGATGAGACTATTGTG 58.066 37.037 0.00 0.00 0.00 3.33
67 68 8.198807 TGGATGATATGATGAGACTATTGTGT 57.801 34.615 0.00 0.00 0.00 3.72
68 69 8.092687 TGGATGATATGATGAGACTATTGTGTG 58.907 37.037 0.00 0.00 0.00 3.82
69 70 8.093307 GGATGATATGATGAGACTATTGTGTGT 58.907 37.037 0.00 0.00 0.00 3.72
72 73 9.918630 TGATATGATGAGACTATTGTGTGTATG 57.081 33.333 0.00 0.00 0.00 2.39
77 78 9.918630 TGATGAGACTATTGTGTGTATGATATG 57.081 33.333 0.00 0.00 0.00 1.78
80 81 9.918630 TGAGACTATTGTGTGTATGATATGATG 57.081 33.333 0.00 0.00 0.00 3.07
100 101 7.878547 TGATGAACATATTGCCAGTTTATCA 57.121 32.000 7.58 7.58 42.31 2.15
101 102 8.467963 TGATGAACATATTGCCAGTTTATCAT 57.532 30.769 7.58 0.00 40.80 2.45
102 103 9.571816 TGATGAACATATTGCCAGTTTATCATA 57.428 29.630 7.58 0.00 40.80 2.15
105 106 9.571816 TGAACATATTGCCAGTTTATCATATGA 57.428 29.630 8.10 8.10 0.00 2.15
152 153 8.889849 ATACAAAAACATCACAAATACGTAGC 57.110 30.769 0.08 0.00 0.00 3.58
153 154 6.146898 ACAAAAACATCACAAATACGTAGCC 58.853 36.000 0.08 0.00 0.00 3.93
154 155 5.950758 AAAACATCACAAATACGTAGCCA 57.049 34.783 0.08 0.00 0.00 4.75
155 156 5.950758 AAACATCACAAATACGTAGCCAA 57.049 34.783 0.08 0.00 0.00 4.52
156 157 5.950758 AACATCACAAATACGTAGCCAAA 57.049 34.783 0.08 0.00 0.00 3.28
157 158 5.950758 ACATCACAAATACGTAGCCAAAA 57.049 34.783 0.08 0.00 0.00 2.44
158 159 6.320494 ACATCACAAATACGTAGCCAAAAA 57.680 33.333 0.08 0.00 0.00 1.94
184 185 8.438676 AAGATATGTGAAAATGTAGTGGTAGC 57.561 34.615 0.00 0.00 0.00 3.58
185 186 6.701841 AGATATGTGAAAATGTAGTGGTAGCG 59.298 38.462 0.00 0.00 0.00 4.26
186 187 3.997762 TGTGAAAATGTAGTGGTAGCGT 58.002 40.909 0.00 0.00 0.00 5.07
187 188 4.382291 TGTGAAAATGTAGTGGTAGCGTT 58.618 39.130 0.00 0.00 0.00 4.84
188 189 4.449743 TGTGAAAATGTAGTGGTAGCGTTC 59.550 41.667 0.00 0.00 0.00 3.95
189 190 4.689345 GTGAAAATGTAGTGGTAGCGTTCT 59.311 41.667 0.00 0.00 0.00 3.01
190 191 5.178809 GTGAAAATGTAGTGGTAGCGTTCTT 59.821 40.000 0.00 0.00 0.00 2.52
191 192 5.761234 TGAAAATGTAGTGGTAGCGTTCTTT 59.239 36.000 0.00 0.00 0.00 2.52
192 193 6.930164 TGAAAATGTAGTGGTAGCGTTCTTTA 59.070 34.615 0.00 0.00 0.00 1.85
193 194 6.963049 AAATGTAGTGGTAGCGTTCTTTAG 57.037 37.500 0.00 0.00 0.00 1.85
194 195 3.841643 TGTAGTGGTAGCGTTCTTTAGC 58.158 45.455 0.00 0.00 0.00 3.09
195 196 1.992170 AGTGGTAGCGTTCTTTAGCG 58.008 50.000 0.00 0.00 38.61 4.26
203 204 2.493997 CGTTCTTTAGCGCTGAACAG 57.506 50.000 28.14 20.13 39.77 3.16
204 205 1.126846 CGTTCTTTAGCGCTGAACAGG 59.873 52.381 28.14 15.56 39.77 4.00
205 206 2.413837 GTTCTTTAGCGCTGAACAGGA 58.586 47.619 25.71 14.13 39.63 3.86
206 207 2.806244 GTTCTTTAGCGCTGAACAGGAA 59.194 45.455 25.71 18.22 39.63 3.36
207 208 3.120321 TCTTTAGCGCTGAACAGGAAA 57.880 42.857 22.90 9.70 0.00 3.13
208 209 3.472652 TCTTTAGCGCTGAACAGGAAAA 58.527 40.909 22.90 8.91 0.00 2.29
209 210 3.250040 TCTTTAGCGCTGAACAGGAAAAC 59.750 43.478 22.90 0.00 0.00 2.43
210 211 1.144969 TAGCGCTGAACAGGAAAACG 58.855 50.000 22.90 0.06 0.00 3.60
211 212 1.725973 GCGCTGAACAGGAAAACGC 60.726 57.895 0.00 6.08 37.93 4.84
212 213 1.941812 CGCTGAACAGGAAAACGCT 59.058 52.632 3.99 0.00 0.00 5.07
213 214 1.144969 CGCTGAACAGGAAAACGCTA 58.855 50.000 3.99 0.00 0.00 4.26
214 215 1.136336 CGCTGAACAGGAAAACGCTAC 60.136 52.381 3.99 0.00 0.00 3.58
215 216 2.143925 GCTGAACAGGAAAACGCTACT 58.856 47.619 3.99 0.00 0.00 2.57
216 217 2.096218 GCTGAACAGGAAAACGCTACTG 60.096 50.000 3.99 0.00 37.01 2.74
217 218 1.871039 TGAACAGGAAAACGCTACTGC 59.129 47.619 0.00 0.00 34.40 4.40
218 219 2.143925 GAACAGGAAAACGCTACTGCT 58.856 47.619 0.00 0.00 36.97 4.24
219 220 3.243941 TGAACAGGAAAACGCTACTGCTA 60.244 43.478 0.00 0.00 36.97 3.49
220 221 3.396260 ACAGGAAAACGCTACTGCTAA 57.604 42.857 0.00 0.00 36.97 3.09
221 222 3.326747 ACAGGAAAACGCTACTGCTAAG 58.673 45.455 0.00 0.00 36.97 2.18
222 223 2.094417 CAGGAAAACGCTACTGCTAAGC 59.906 50.000 0.00 0.00 36.97 3.09
223 224 1.397343 GGAAAACGCTACTGCTAAGCC 59.603 52.381 0.00 0.00 36.60 4.35
224 225 2.073816 GAAAACGCTACTGCTAAGCCA 58.926 47.619 0.00 0.00 36.60 4.75
225 226 1.439679 AAACGCTACTGCTAAGCCAC 58.560 50.000 0.00 0.00 36.60 5.01
226 227 0.608640 AACGCTACTGCTAAGCCACT 59.391 50.000 0.00 0.00 36.60 4.00
227 228 0.608640 ACGCTACTGCTAAGCCACTT 59.391 50.000 0.00 0.00 36.60 3.16
228 229 1.822990 ACGCTACTGCTAAGCCACTTA 59.177 47.619 0.00 0.00 36.60 2.24
229 230 2.159226 ACGCTACTGCTAAGCCACTTAG 60.159 50.000 9.52 9.52 44.29 2.18
246 247 2.740826 GCAGTAGCGCGGTTTGGA 60.741 61.111 19.09 0.00 0.00 3.53
247 248 3.023591 GCAGTAGCGCGGTTTGGAC 62.024 63.158 19.09 8.73 0.00 4.02
248 249 1.666553 CAGTAGCGCGGTTTGGACA 60.667 57.895 19.09 0.00 0.00 4.02
249 250 1.374252 AGTAGCGCGGTTTGGACAG 60.374 57.895 19.09 0.00 0.00 3.51
250 251 2.740826 TAGCGCGGTTTGGACAGC 60.741 61.111 19.09 0.00 42.55 4.40
255 256 3.165498 CGGTTTGGACAGCGCTAC 58.835 61.111 10.99 7.50 0.00 3.58
256 257 1.374252 CGGTTTGGACAGCGCTACT 60.374 57.895 10.99 0.00 0.00 2.57
288 289 3.856508 GCAGTAGCGCGTGAAGAA 58.143 55.556 8.43 0.00 0.00 2.52
289 290 2.150424 GCAGTAGCGCGTGAAGAAA 58.850 52.632 8.43 0.00 0.00 2.52
290 291 0.179248 GCAGTAGCGCGTGAAGAAAC 60.179 55.000 8.43 0.00 0.00 2.78
291 292 0.091344 CAGTAGCGCGTGAAGAAACG 59.909 55.000 8.43 0.00 46.30 3.60
297 298 4.999550 CGTGAAGAAACGCGCTAC 57.000 55.556 5.73 0.00 36.65 3.58
298 299 2.431539 CGTGAAGAAACGCGCTACT 58.568 52.632 5.73 0.00 36.65 2.57
299 300 0.091344 CGTGAAGAAACGCGCTACTG 59.909 55.000 5.73 0.00 36.65 2.74
300 301 0.179248 GTGAAGAAACGCGCTACTGC 60.179 55.000 5.73 1.57 0.00 4.40
301 302 0.319555 TGAAGAAACGCGCTACTGCT 60.320 50.000 5.73 0.00 36.97 4.24
302 303 1.068125 TGAAGAAACGCGCTACTGCTA 60.068 47.619 5.73 0.00 36.97 3.49
303 304 1.990563 GAAGAAACGCGCTACTGCTAA 59.009 47.619 5.73 0.00 36.97 3.09
304 305 1.630148 AGAAACGCGCTACTGCTAAG 58.370 50.000 5.73 0.00 36.97 2.18
305 306 0.025128 GAAACGCGCTACTGCTAAGC 59.975 55.000 5.73 0.00 36.97 3.09
314 315 4.859629 GCTACTGCTAAGCGTTAATTGT 57.140 40.909 0.00 0.00 36.03 2.71
315 316 5.961395 GCTACTGCTAAGCGTTAATTGTA 57.039 39.130 0.00 0.00 36.03 2.41
316 317 5.725241 GCTACTGCTAAGCGTTAATTGTAC 58.275 41.667 0.00 0.00 36.03 2.90
317 318 5.276726 GCTACTGCTAAGCGTTAATTGTACC 60.277 44.000 0.00 0.00 36.03 3.34
318 319 3.937079 ACTGCTAAGCGTTAATTGTACCC 59.063 43.478 0.00 0.00 0.00 3.69
319 320 2.931325 TGCTAAGCGTTAATTGTACCCG 59.069 45.455 0.00 0.00 0.00 5.28
320 321 2.286008 GCTAAGCGTTAATTGTACCCGC 60.286 50.000 0.00 0.00 44.35 6.13
321 322 4.959491 GCGTTAATTGTACCCGCG 57.041 55.556 0.00 0.00 34.66 6.46
322 323 1.297085 GCGTTAATTGTACCCGCGC 60.297 57.895 0.00 0.00 34.66 6.86
323 324 1.698714 GCGTTAATTGTACCCGCGCT 61.699 55.000 5.56 0.00 40.19 5.92
324 325 1.558741 CGTTAATTGTACCCGCGCTA 58.441 50.000 5.56 0.00 0.00 4.26
325 326 1.256117 CGTTAATTGTACCCGCGCTAC 59.744 52.381 5.56 1.51 0.00 3.58
326 327 2.543641 GTTAATTGTACCCGCGCTACT 58.456 47.619 5.56 0.00 0.00 2.57
327 328 2.212869 TAATTGTACCCGCGCTACTG 57.787 50.000 5.56 0.00 0.00 2.74
328 329 0.533491 AATTGTACCCGCGCTACTGA 59.467 50.000 5.56 0.00 0.00 3.41
329 330 0.750850 ATTGTACCCGCGCTACTGAT 59.249 50.000 5.56 0.00 0.00 2.90
330 331 1.391577 TTGTACCCGCGCTACTGATA 58.608 50.000 5.56 0.00 0.00 2.15
331 332 0.949397 TGTACCCGCGCTACTGATAG 59.051 55.000 5.56 0.00 0.00 2.08
343 344 4.985538 CTACTGATAGCCCTTATACCCG 57.014 50.000 0.00 0.00 0.00 5.28
344 345 1.900486 ACTGATAGCCCTTATACCCGC 59.100 52.381 0.00 0.00 0.00 6.13
345 346 0.892755 TGATAGCCCTTATACCCGCG 59.107 55.000 0.00 0.00 0.00 6.46
346 347 0.459759 GATAGCCCTTATACCCGCGC 60.460 60.000 0.00 0.00 0.00 6.86
347 348 0.903454 ATAGCCCTTATACCCGCGCT 60.903 55.000 5.56 0.00 0.00 5.92
348 349 0.251297 TAGCCCTTATACCCGCGCTA 60.251 55.000 5.56 0.00 0.00 4.26
349 350 1.373873 GCCCTTATACCCGCGCTAC 60.374 63.158 5.56 0.00 0.00 3.58
350 351 1.813728 GCCCTTATACCCGCGCTACT 61.814 60.000 5.56 0.00 0.00 2.57
351 352 0.038526 CCCTTATACCCGCGCTACTG 60.039 60.000 5.56 0.00 0.00 2.74
352 353 0.666577 CCTTATACCCGCGCTACTGC 60.667 60.000 5.56 0.00 0.00 4.40
353 354 0.314302 CTTATACCCGCGCTACTGCT 59.686 55.000 5.56 0.00 36.97 4.24
354 355 1.538512 CTTATACCCGCGCTACTGCTA 59.461 52.381 5.56 0.00 36.97 3.49
355 356 1.162698 TATACCCGCGCTACTGCTAG 58.837 55.000 5.56 0.00 36.97 3.42
356 357 0.822532 ATACCCGCGCTACTGCTAGT 60.823 55.000 5.56 0.00 36.97 2.57
357 358 1.033746 TACCCGCGCTACTGCTAGTT 61.034 55.000 5.56 0.00 36.97 2.24
358 359 1.153628 CCCGCGCTACTGCTAGTTT 60.154 57.895 5.56 0.00 36.97 2.66
359 360 0.739813 CCCGCGCTACTGCTAGTTTT 60.740 55.000 5.56 0.00 36.97 2.43
360 361 1.076332 CCGCGCTACTGCTAGTTTTT 58.924 50.000 5.56 0.00 36.97 1.94
417 418 4.697352 GTGCACATACCAAAGATTCTCACT 59.303 41.667 13.17 0.00 0.00 3.41
427 430 7.807680 ACCAAAGATTCTCACTTAACGATTTC 58.192 34.615 0.00 0.00 0.00 2.17
433 436 9.884465 AGATTCTCACTTAACGATTTCTTTTTG 57.116 29.630 0.00 0.00 0.00 2.44
434 437 9.118236 GATTCTCACTTAACGATTTCTTTTTGG 57.882 33.333 0.00 0.00 0.00 3.28
446 449 4.447138 TTCTTTTTGGAGAGGTGCCTAA 57.553 40.909 0.00 0.00 0.00 2.69
484 487 5.172687 TCAGTTGGATAAGCACCACATAA 57.827 39.130 0.00 0.00 37.13 1.90
507 511 5.678132 ATTGCTTGCAAAAATTGTCCTTC 57.322 34.783 12.17 0.00 0.00 3.46
585 590 3.636764 GGTGGGAACAAAAGATTCTGTGT 59.363 43.478 0.00 0.00 46.06 3.72
598 603 5.284079 AGATTCTGTGTCACAAATGTTTGC 58.716 37.500 7.18 0.00 41.79 3.68
601 606 3.446873 TCTGTGTCACAAATGTTTGCCTT 59.553 39.130 7.18 0.00 41.79 4.35
648 653 1.056660 TCCAGAACCTTGGGAGTGAC 58.943 55.000 0.00 0.00 38.81 3.67
649 654 1.059913 CCAGAACCTTGGGAGTGACT 58.940 55.000 0.00 0.00 34.46 3.41
650 655 1.271054 CCAGAACCTTGGGAGTGACTG 60.271 57.143 0.00 0.00 34.46 3.51
755 764 5.326200 AGAACCTCACGTGTCCTTAATAG 57.674 43.478 16.51 2.39 0.00 1.73
788 828 4.848357 CCTTAATCAAGGTGACCTGTCAT 58.152 43.478 4.15 0.00 45.59 3.06
789 829 4.878397 CCTTAATCAAGGTGACCTGTCATC 59.122 45.833 4.15 2.57 45.59 2.92
790 830 3.356529 AATCAAGGTGACCTGTCATCC 57.643 47.619 4.15 8.43 41.52 3.51
792 832 1.625315 TCAAGGTGACCTGTCATCCTG 59.375 52.381 4.15 11.02 41.52 3.86
793 833 0.987294 AAGGTGACCTGTCATCCTGG 59.013 55.000 4.15 0.00 41.52 4.45
794 834 1.078143 GGTGACCTGTCATCCTGGC 60.078 63.158 2.91 0.00 42.18 4.85
796 836 0.392193 GTGACCTGTCATCCTGGCTG 60.392 60.000 2.91 0.00 42.18 4.85
798 838 0.107945 GACCTGTCATCCTGGCTGTC 60.108 60.000 0.00 0.00 35.64 3.51
800 840 1.556373 CCTGTCATCCTGGCTGTCCA 61.556 60.000 0.00 0.00 40.85 4.02
801 841 0.545171 CTGTCATCCTGGCTGTCCAT 59.455 55.000 0.00 0.00 42.51 3.41
802 842 1.764723 CTGTCATCCTGGCTGTCCATA 59.235 52.381 0.00 0.00 42.51 2.74
803 843 2.171237 CTGTCATCCTGGCTGTCCATAA 59.829 50.000 0.00 0.00 42.51 1.90
804 844 2.575735 TGTCATCCTGGCTGTCCATAAA 59.424 45.455 0.00 0.00 42.51 1.40
806 846 3.567164 GTCATCCTGGCTGTCCATAAATG 59.433 47.826 0.00 0.00 42.51 2.32
807 847 3.459227 TCATCCTGGCTGTCCATAAATGA 59.541 43.478 0.00 0.00 42.51 2.57
808 848 4.105217 TCATCCTGGCTGTCCATAAATGAT 59.895 41.667 0.00 0.00 42.51 2.45
810 850 5.233083 TCCTGGCTGTCCATAAATGATAG 57.767 43.478 0.00 0.00 42.51 2.08
812 852 5.012458 TCCTGGCTGTCCATAAATGATAGAG 59.988 44.000 0.00 0.00 42.51 2.43
813 853 4.645535 TGGCTGTCCATAAATGATAGAGC 58.354 43.478 6.10 6.10 37.47 4.09
814 854 4.006319 GGCTGTCCATAAATGATAGAGCC 58.994 47.826 13.73 13.73 40.23 4.70
815 855 3.681897 GCTGTCCATAAATGATAGAGCCG 59.318 47.826 0.00 0.00 29.72 5.52
816 856 4.800914 GCTGTCCATAAATGATAGAGCCGT 60.801 45.833 0.00 0.00 29.72 5.68
817 857 5.290493 TGTCCATAAATGATAGAGCCGTT 57.710 39.130 0.00 0.00 0.00 4.44
818 858 5.056480 TGTCCATAAATGATAGAGCCGTTG 58.944 41.667 0.00 0.00 0.00 4.10
819 859 5.057149 GTCCATAAATGATAGAGCCGTTGT 58.943 41.667 0.00 0.00 0.00 3.32
820 860 5.050091 GTCCATAAATGATAGAGCCGTTGTG 60.050 44.000 0.00 0.00 0.00 3.33
821 861 4.214119 CCATAAATGATAGAGCCGTTGTGG 59.786 45.833 0.00 0.00 42.50 4.17
822 862 3.350219 AAATGATAGAGCCGTTGTGGT 57.650 42.857 0.00 0.00 41.21 4.16
823 863 2.604046 ATGATAGAGCCGTTGTGGTC 57.396 50.000 0.00 0.00 41.21 4.02
824 864 1.557099 TGATAGAGCCGTTGTGGTCT 58.443 50.000 0.00 0.00 41.21 3.85
825 865 2.730382 TGATAGAGCCGTTGTGGTCTA 58.270 47.619 2.83 2.83 41.21 2.59
826 866 3.296854 TGATAGAGCCGTTGTGGTCTAT 58.703 45.455 11.35 11.35 40.62 1.98
827 867 4.466827 TGATAGAGCCGTTGTGGTCTATA 58.533 43.478 11.47 0.00 39.30 1.31
828 868 4.277672 TGATAGAGCCGTTGTGGTCTATAC 59.722 45.833 11.47 7.38 39.30 1.47
829 869 2.736347 AGAGCCGTTGTGGTCTATACT 58.264 47.619 0.00 0.00 41.21 2.12
830 870 2.427453 AGAGCCGTTGTGGTCTATACTG 59.573 50.000 0.00 0.00 41.21 2.74
831 871 2.165845 GAGCCGTTGTGGTCTATACTGT 59.834 50.000 0.00 0.00 41.21 3.55
832 872 3.359033 AGCCGTTGTGGTCTATACTGTA 58.641 45.455 0.00 0.00 41.21 2.74
833 873 3.129988 AGCCGTTGTGGTCTATACTGTAC 59.870 47.826 0.00 0.00 41.21 2.90
834 874 3.119388 GCCGTTGTGGTCTATACTGTACA 60.119 47.826 0.00 0.00 41.21 2.90
835 875 4.618927 GCCGTTGTGGTCTATACTGTACAA 60.619 45.833 0.00 0.00 41.21 2.41
836 876 5.472148 CCGTTGTGGTCTATACTGTACAAA 58.528 41.667 0.00 0.00 31.14 2.83
837 877 6.103997 CCGTTGTGGTCTATACTGTACAAAT 58.896 40.000 0.00 0.00 31.14 2.32
838 878 6.035650 CCGTTGTGGTCTATACTGTACAAATG 59.964 42.308 0.00 0.00 31.14 2.32
839 879 6.035650 CGTTGTGGTCTATACTGTACAAATGG 59.964 42.308 0.00 0.00 31.14 3.16
840 880 6.614694 TGTGGTCTATACTGTACAAATGGT 57.385 37.500 0.00 0.00 0.00 3.55
841 881 6.403049 TGTGGTCTATACTGTACAAATGGTG 58.597 40.000 0.00 0.00 0.00 4.17
842 882 5.293569 GTGGTCTATACTGTACAAATGGTGC 59.706 44.000 0.00 0.00 0.00 5.01
843 883 5.046231 TGGTCTATACTGTACAAATGGTGCA 60.046 40.000 0.00 0.00 39.98 4.57
850 890 4.764679 TGTACAAATGGTGCAGTCAATC 57.235 40.909 0.00 0.00 37.18 2.67
853 893 6.000840 TGTACAAATGGTGCAGTCAATCTAA 58.999 36.000 0.00 0.00 37.18 2.10
854 894 6.658816 TGTACAAATGGTGCAGTCAATCTAAT 59.341 34.615 0.00 0.00 37.18 1.73
900 1562 1.680338 AAATGATAGAGCCGTTGCCC 58.320 50.000 0.00 0.00 38.69 5.36
901 1563 0.532862 AATGATAGAGCCGTTGCCCG 60.533 55.000 0.00 0.00 38.69 6.13
902 1564 1.686325 ATGATAGAGCCGTTGCCCGT 61.686 55.000 0.00 0.00 38.69 5.28
903 1565 1.153429 GATAGAGCCGTTGCCCGTT 60.153 57.895 0.00 0.00 38.69 4.44
904 1566 1.429148 GATAGAGCCGTTGCCCGTTG 61.429 60.000 0.00 0.00 38.69 4.10
947 1609 3.008375 ACACATGGTGCAGTCAATCTAGT 59.992 43.478 0.00 0.00 36.98 2.57
963 1626 1.068741 CTAGTAAGCTTGTAGCCCCGG 59.931 57.143 9.86 0.00 43.77 5.73
1036 1705 2.816083 TTCGCATGGTTACCGGCG 60.816 61.111 26.66 26.66 46.23 6.46
1071 1740 2.985847 GCCGCAAACTCCAGGCTT 60.986 61.111 0.00 0.00 45.67 4.35
1120 1792 2.170607 GCTAGCTCCAGGTTTGTATCCA 59.829 50.000 7.70 0.00 0.00 3.41
1124 1796 2.684927 GCTCCAGGTTTGTATCCAGCAT 60.685 50.000 0.00 0.00 0.00 3.79
1126 1798 3.620488 TCCAGGTTTGTATCCAGCATTC 58.380 45.455 0.00 0.00 0.00 2.67
1134 1806 2.749076 TGTATCCAGCATTCTGTTGCAC 59.251 45.455 0.00 0.00 45.23 4.57
1161 1869 6.149308 TCACTCTCGTTGCATGAATAATTTGT 59.851 34.615 0.00 0.00 0.00 2.83
1248 1956 1.153628 AAGAGGTATGCACGTCGCC 60.154 57.895 7.38 0.00 42.96 5.54
1378 2086 2.092882 GTCGGAAGAAGAACGGCGG 61.093 63.158 13.24 0.00 45.01 6.13
1459 2167 1.466167 CGGTCACTGGAGCAATTTGAG 59.534 52.381 0.00 0.00 41.62 3.02
1466 2174 4.698780 CACTGGAGCAATTTGAGAATCTCA 59.301 41.667 9.18 9.18 38.87 3.27
1469 2177 3.693085 GGAGCAATTTGAGAATCTCAGCA 59.307 43.478 19.68 9.95 41.75 4.41
1601 2309 6.691388 GTGGCGCTCTAAGGTATTTATTTTTG 59.309 38.462 7.64 0.00 0.00 2.44
1602 2310 6.376018 TGGCGCTCTAAGGTATTTATTTTTGT 59.624 34.615 7.64 0.00 0.00 2.83
1643 2461 9.780186 ACTGTTCAAATTTTAGCTACTACTCTT 57.220 29.630 0.00 0.00 0.00 2.85
1651 2469 3.761311 AGCTACTACTCTTTCCGTTCG 57.239 47.619 0.00 0.00 0.00 3.95
1741 2560 5.365605 TGTTCTGAACCTCTCCAACTTCTTA 59.634 40.000 17.26 0.00 0.00 2.10
1755 2574 5.334105 CCAACTTCTTACTCCACAACATTCG 60.334 44.000 0.00 0.00 0.00 3.34
1781 2600 3.368236 GCGAAACTAGATTCACGAAGCTT 59.632 43.478 12.61 0.00 38.17 3.74
2146 3751 1.438562 CCGATGCCAATGACGATGCA 61.439 55.000 0.00 0.00 38.23 3.96
2153 3758 2.797087 GCCAATGACGATGCAAATCCAG 60.797 50.000 0.00 0.00 0.00 3.86
2155 3760 3.119388 CCAATGACGATGCAAATCCAGTT 60.119 43.478 0.00 0.00 0.00 3.16
2323 3942 0.394216 TTGCTTCCATGGATCACCGG 60.394 55.000 17.06 0.00 39.42 5.28
2330 3952 2.746375 ATGGATCACCGGACTGGGC 61.746 63.158 9.46 0.00 44.64 5.36
2368 3990 6.025793 AGGTACTGTTGGGCCATTTTATAT 57.974 37.500 7.26 0.00 37.18 0.86
2467 4154 5.304101 AGGCAACATCTACATTGGAAAAACA 59.696 36.000 0.00 0.00 41.41 2.83
2507 4194 8.686334 TGATTAAGCTATTCCAAGAACAATTCC 58.314 33.333 0.00 0.00 0.00 3.01
2838 4573 6.618287 TTACTCTTCATGTTGACCAACTTG 57.382 37.500 17.49 17.49 43.60 3.16
3562 5361 6.769512 AGTGGTATATGCAGGTATTGTAAGG 58.230 40.000 0.00 0.00 0.00 2.69
3563 5362 6.329197 AGTGGTATATGCAGGTATTGTAAGGT 59.671 38.462 0.00 0.00 0.00 3.50
3564 5363 7.511371 AGTGGTATATGCAGGTATTGTAAGGTA 59.489 37.037 0.00 0.00 0.00 3.08
3565 5364 8.319146 GTGGTATATGCAGGTATTGTAAGGTAT 58.681 37.037 0.00 0.00 0.00 2.73
3566 5365 8.886369 TGGTATATGCAGGTATTGTAAGGTATT 58.114 33.333 0.00 0.00 0.00 1.89
3567 5366 9.162764 GGTATATGCAGGTATTGTAAGGTATTG 57.837 37.037 0.00 0.00 0.00 1.90
3568 5367 9.720769 GTATATGCAGGTATTGTAAGGTATTGT 57.279 33.333 0.00 0.00 0.00 2.71
3571 5370 8.677148 ATGCAGGTATTGTAAGGTATTGTAAG 57.323 34.615 0.00 0.00 0.00 2.34
3580 5379 2.557869 AGGTATTGTAAGTGGGAGGCA 58.442 47.619 0.00 0.00 0.00 4.75
3583 5382 3.118038 GGTATTGTAAGTGGGAGGCATGA 60.118 47.826 0.00 0.00 0.00 3.07
4213 6190 4.675146 GCCACGACATCACTTGCATATTTT 60.675 41.667 0.00 0.00 0.00 1.82
4260 6238 0.888285 GAGCTGCCTTGCACTTGAGT 60.888 55.000 0.00 0.00 33.79 3.41
4314 6292 0.455410 TCTTGTGTGCTTGTTGTGGC 59.545 50.000 0.00 0.00 0.00 5.01
4375 6353 5.253330 AGTTGCTTTCTCGGGAATAAATGA 58.747 37.500 0.00 0.00 0.00 2.57
4403 6381 2.076100 GACAATCTGCGGACAACATCA 58.924 47.619 0.00 0.00 0.00 3.07
4493 6483 0.315886 ATGGTTTTCGCCCGGTTTTC 59.684 50.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.403583 TCACATCATAACCACGATATAGCTATA 57.596 33.333 15.69 15.69 0.00 1.31
1 2 8.191446 GTCACATCATAACCACGATATAGCTAT 58.809 37.037 11.77 11.77 0.00 2.97
2 3 7.535997 GTCACATCATAACCACGATATAGCTA 58.464 38.462 0.00 0.00 0.00 3.32
3 4 6.390721 GTCACATCATAACCACGATATAGCT 58.609 40.000 0.00 0.00 0.00 3.32
4 5 5.286320 CGTCACATCATAACCACGATATAGC 59.714 44.000 0.00 0.00 0.00 2.97
5 6 6.523546 GTCGTCACATCATAACCACGATATAG 59.476 42.308 0.00 0.00 38.43 1.31
6 7 6.016943 TGTCGTCACATCATAACCACGATATA 60.017 38.462 0.00 0.00 38.43 0.86
7 8 5.220381 GTCGTCACATCATAACCACGATAT 58.780 41.667 0.00 0.00 38.43 1.63
8 9 4.096682 TGTCGTCACATCATAACCACGATA 59.903 41.667 0.00 0.00 38.43 2.92
9 10 3.119280 TGTCGTCACATCATAACCACGAT 60.119 43.478 0.00 0.00 38.43 3.73
10 11 2.229302 TGTCGTCACATCATAACCACGA 59.771 45.455 0.00 0.00 34.08 4.35
11 12 2.601804 TGTCGTCACATCATAACCACG 58.398 47.619 0.00 0.00 0.00 4.94
12 13 4.180817 TCATGTCGTCACATCATAACCAC 58.819 43.478 0.00 0.00 41.69 4.16
13 14 4.464069 TCATGTCGTCACATCATAACCA 57.536 40.909 0.00 0.00 41.69 3.67
14 15 5.991328 AATCATGTCGTCACATCATAACC 57.009 39.130 0.00 0.00 41.69 2.85
15 16 8.551205 ACATAAATCATGTCGTCACATCATAAC 58.449 33.333 0.00 0.00 44.99 1.89
16 17 8.661352 ACATAAATCATGTCGTCACATCATAA 57.339 30.769 0.00 0.00 44.99 1.90
38 39 9.668497 CAATAGTCTCATCATATCATCCAACAT 57.332 33.333 0.00 0.00 0.00 2.71
39 40 8.654094 ACAATAGTCTCATCATATCATCCAACA 58.346 33.333 0.00 0.00 0.00 3.33
40 41 8.933807 CACAATAGTCTCATCATATCATCCAAC 58.066 37.037 0.00 0.00 0.00 3.77
41 42 8.654094 ACACAATAGTCTCATCATATCATCCAA 58.346 33.333 0.00 0.00 0.00 3.53
42 43 8.092687 CACACAATAGTCTCATCATATCATCCA 58.907 37.037 0.00 0.00 0.00 3.41
43 44 8.093307 ACACACAATAGTCTCATCATATCATCC 58.907 37.037 0.00 0.00 0.00 3.51
46 47 9.918630 CATACACACAATAGTCTCATCATATCA 57.081 33.333 0.00 0.00 0.00 2.15
51 52 9.918630 CATATCATACACACAATAGTCTCATCA 57.081 33.333 0.00 0.00 0.00 3.07
54 55 9.918630 CATCATATCATACACACAATAGTCTCA 57.081 33.333 0.00 0.00 0.00 3.27
64 65 9.764870 GCAATATGTTCATCATATCATACACAC 57.235 33.333 1.64 0.00 45.64 3.82
65 66 8.949177 GGCAATATGTTCATCATATCATACACA 58.051 33.333 1.64 0.00 45.64 3.72
66 67 8.949177 TGGCAATATGTTCATCATATCATACAC 58.051 33.333 0.00 0.00 45.64 2.90
67 68 9.169592 CTGGCAATATGTTCATCATATCATACA 57.830 33.333 0.00 0.00 45.64 2.29
68 69 9.170734 ACTGGCAATATGTTCATCATATCATAC 57.829 33.333 0.00 0.00 45.64 2.39
69 70 9.743581 AACTGGCAATATGTTCATCATATCATA 57.256 29.630 0.00 0.00 45.64 2.15
70 71 8.645814 AACTGGCAATATGTTCATCATATCAT 57.354 30.769 0.00 0.00 45.64 2.45
71 72 8.467963 AAACTGGCAATATGTTCATCATATCA 57.532 30.769 0.00 0.00 45.64 2.15
74 75 9.571816 TGATAAACTGGCAATATGTTCATCATA 57.428 29.630 0.40 0.00 42.30 2.15
75 76 8.467963 TGATAAACTGGCAATATGTTCATCAT 57.532 30.769 0.40 0.00 40.25 2.45
76 77 7.878547 TGATAAACTGGCAATATGTTCATCA 57.121 32.000 0.40 0.40 29.06 3.07
79 80 9.571816 TCATATGATAAACTGGCAATATGTTCA 57.428 29.630 0.00 1.95 0.00 3.18
126 127 9.976255 GCTACGTATTTGTGATGTTTTTGTATA 57.024 29.630 0.00 0.00 0.00 1.47
127 128 7.966204 GGCTACGTATTTGTGATGTTTTTGTAT 59.034 33.333 0.00 0.00 0.00 2.29
128 129 7.041303 TGGCTACGTATTTGTGATGTTTTTGTA 60.041 33.333 0.00 0.00 0.00 2.41
129 130 6.146898 GGCTACGTATTTGTGATGTTTTTGT 58.853 36.000 0.00 0.00 0.00 2.83
130 131 6.146216 TGGCTACGTATTTGTGATGTTTTTG 58.854 36.000 0.00 0.00 0.00 2.44
131 132 6.320494 TGGCTACGTATTTGTGATGTTTTT 57.680 33.333 0.00 0.00 0.00 1.94
132 133 5.950758 TGGCTACGTATTTGTGATGTTTT 57.049 34.783 0.00 0.00 0.00 2.43
133 134 5.950758 TTGGCTACGTATTTGTGATGTTT 57.049 34.783 0.00 0.00 0.00 2.83
134 135 5.950758 TTTGGCTACGTATTTGTGATGTT 57.049 34.783 0.00 0.00 0.00 2.71
135 136 5.950758 TTTTGGCTACGTATTTGTGATGT 57.049 34.783 0.00 0.00 0.00 3.06
158 159 8.893727 GCTACCACTACATTTTCACATATCTTT 58.106 33.333 0.00 0.00 0.00 2.52
159 160 7.224753 CGCTACCACTACATTTTCACATATCTT 59.775 37.037 0.00 0.00 0.00 2.40
160 161 6.701841 CGCTACCACTACATTTTCACATATCT 59.298 38.462 0.00 0.00 0.00 1.98
161 162 6.479001 ACGCTACCACTACATTTTCACATATC 59.521 38.462 0.00 0.00 0.00 1.63
162 163 6.346096 ACGCTACCACTACATTTTCACATAT 58.654 36.000 0.00 0.00 0.00 1.78
163 164 5.726397 ACGCTACCACTACATTTTCACATA 58.274 37.500 0.00 0.00 0.00 2.29
164 165 4.575885 ACGCTACCACTACATTTTCACAT 58.424 39.130 0.00 0.00 0.00 3.21
165 166 3.997762 ACGCTACCACTACATTTTCACA 58.002 40.909 0.00 0.00 0.00 3.58
166 167 4.689345 AGAACGCTACCACTACATTTTCAC 59.311 41.667 0.00 0.00 0.00 3.18
167 168 4.890088 AGAACGCTACCACTACATTTTCA 58.110 39.130 0.00 0.00 0.00 2.69
168 169 5.857822 AAGAACGCTACCACTACATTTTC 57.142 39.130 0.00 0.00 0.00 2.29
169 170 6.128363 GCTAAAGAACGCTACCACTACATTTT 60.128 38.462 0.00 0.00 0.00 1.82
170 171 5.350640 GCTAAAGAACGCTACCACTACATTT 59.649 40.000 0.00 0.00 0.00 2.32
171 172 4.868734 GCTAAAGAACGCTACCACTACATT 59.131 41.667 0.00 0.00 0.00 2.71
172 173 4.430908 GCTAAAGAACGCTACCACTACAT 58.569 43.478 0.00 0.00 0.00 2.29
173 174 3.671433 CGCTAAAGAACGCTACCACTACA 60.671 47.826 0.00 0.00 0.00 2.74
174 175 2.850647 CGCTAAAGAACGCTACCACTAC 59.149 50.000 0.00 0.00 0.00 2.73
175 176 3.141002 CGCTAAAGAACGCTACCACTA 57.859 47.619 0.00 0.00 0.00 2.74
176 177 1.992170 CGCTAAAGAACGCTACCACT 58.008 50.000 0.00 0.00 0.00 4.00
184 185 1.126846 CCTGTTCAGCGCTAAAGAACG 59.873 52.381 25.14 20.49 43.36 3.95
185 186 2.413837 TCCTGTTCAGCGCTAAAGAAC 58.586 47.619 24.56 24.56 41.42 3.01
186 187 2.831685 TCCTGTTCAGCGCTAAAGAA 57.168 45.000 10.99 7.15 0.00 2.52
187 188 2.831685 TTCCTGTTCAGCGCTAAAGA 57.168 45.000 10.99 0.00 0.00 2.52
188 189 3.555518 GTTTTCCTGTTCAGCGCTAAAG 58.444 45.455 10.99 0.00 0.00 1.85
189 190 2.032377 CGTTTTCCTGTTCAGCGCTAAA 60.032 45.455 10.99 0.00 0.00 1.85
190 191 1.529438 CGTTTTCCTGTTCAGCGCTAA 59.471 47.619 10.99 0.00 0.00 3.09
191 192 1.144969 CGTTTTCCTGTTCAGCGCTA 58.855 50.000 10.99 0.00 0.00 4.26
192 193 1.941812 CGTTTTCCTGTTCAGCGCT 59.058 52.632 2.64 2.64 0.00 5.92
193 194 1.725973 GCGTTTTCCTGTTCAGCGC 60.726 57.895 0.00 0.00 36.75 5.92
194 195 1.136336 GTAGCGTTTTCCTGTTCAGCG 60.136 52.381 0.00 0.00 0.00 5.18
195 196 2.096218 CAGTAGCGTTTTCCTGTTCAGC 60.096 50.000 0.00 0.00 0.00 4.26
196 197 2.096218 GCAGTAGCGTTTTCCTGTTCAG 60.096 50.000 0.00 0.00 0.00 3.02
197 198 1.871039 GCAGTAGCGTTTTCCTGTTCA 59.129 47.619 0.00 0.00 0.00 3.18
198 199 2.596263 GCAGTAGCGTTTTCCTGTTC 57.404 50.000 0.00 0.00 0.00 3.18
222 223 1.878522 CCGCGCTACTGCTAAGTGG 60.879 63.158 5.56 0.00 37.19 4.00
223 224 0.736325 AACCGCGCTACTGCTAAGTG 60.736 55.000 5.56 0.00 37.19 3.16
224 225 0.037605 AAACCGCGCTACTGCTAAGT 60.038 50.000 5.56 0.00 40.67 2.24
225 226 0.370273 CAAACCGCGCTACTGCTAAG 59.630 55.000 5.56 0.00 36.97 2.18
226 227 1.017177 CCAAACCGCGCTACTGCTAA 61.017 55.000 5.56 0.00 36.97 3.09
227 228 1.447140 CCAAACCGCGCTACTGCTA 60.447 57.895 5.56 0.00 36.97 3.49
228 229 2.742372 CCAAACCGCGCTACTGCT 60.742 61.111 5.56 0.00 36.97 4.24
229 230 2.740826 TCCAAACCGCGCTACTGC 60.741 61.111 5.56 0.00 0.00 4.40
230 231 1.626654 CTGTCCAAACCGCGCTACTG 61.627 60.000 5.56 0.00 0.00 2.74
231 232 1.374252 CTGTCCAAACCGCGCTACT 60.374 57.895 5.56 0.00 0.00 2.57
232 233 3.023591 GCTGTCCAAACCGCGCTAC 62.024 63.158 5.56 0.00 0.00 3.58
233 234 2.740826 GCTGTCCAAACCGCGCTA 60.741 61.111 5.56 0.00 0.00 4.26
237 238 2.740826 TAGCGCTGTCCAAACCGC 60.741 61.111 22.90 0.00 46.14 5.68
238 239 1.374252 AGTAGCGCTGTCCAAACCG 60.374 57.895 22.90 0.00 0.00 4.44
239 240 1.912371 GCAGTAGCGCTGTCCAAACC 61.912 60.000 22.90 0.00 46.64 3.27
240 241 1.497722 GCAGTAGCGCTGTCCAAAC 59.502 57.895 22.90 9.18 46.64 2.93
241 242 3.966215 GCAGTAGCGCTGTCCAAA 58.034 55.556 22.90 0.00 46.64 3.28
242 243 6.454705 CTACTTAGCAGTAGCGCTGTCCAA 62.455 50.000 22.90 5.53 44.85 3.53
243 244 5.035394 CTACTTAGCAGTAGCGCTGTCCA 62.035 52.174 22.90 0.00 44.85 4.02
244 245 2.541999 CTACTTAGCAGTAGCGCTGTCC 60.542 54.545 22.90 7.89 44.85 4.02
245 246 2.722071 CTACTTAGCAGTAGCGCTGTC 58.278 52.381 22.90 13.32 44.85 3.51
246 247 2.853731 CTACTTAGCAGTAGCGCTGT 57.146 50.000 22.90 9.23 44.85 4.40
266 267 0.456142 TTCACGCGCTACTGCTGTAG 60.456 55.000 22.56 22.56 46.59 2.74
267 268 0.456142 CTTCACGCGCTACTGCTGTA 60.456 55.000 5.73 3.25 36.97 2.74
268 269 1.734477 CTTCACGCGCTACTGCTGT 60.734 57.895 5.73 0.66 36.97 4.40
269 270 1.008875 TTCTTCACGCGCTACTGCTG 61.009 55.000 5.73 0.00 36.97 4.41
270 271 0.319555 TTTCTTCACGCGCTACTGCT 60.320 50.000 5.73 0.00 36.97 4.24
271 272 0.179248 GTTTCTTCACGCGCTACTGC 60.179 55.000 5.73 0.00 0.00 4.40
272 273 0.091344 CGTTTCTTCACGCGCTACTG 59.909 55.000 5.73 0.00 32.43 2.74
273 274 2.431539 CGTTTCTTCACGCGCTACT 58.568 52.632 5.73 0.00 32.43 2.57
274 275 4.999550 CGTTTCTTCACGCGCTAC 57.000 55.556 5.73 0.00 32.43 3.58
280 281 0.091344 CAGTAGCGCGTTTCTTCACG 59.909 55.000 8.43 0.00 43.36 4.35
281 282 0.179248 GCAGTAGCGCGTTTCTTCAC 60.179 55.000 8.43 0.00 0.00 3.18
282 283 2.150424 GCAGTAGCGCGTTTCTTCA 58.850 52.632 8.43 0.00 0.00 3.02
293 294 4.859629 ACAATTAACGCTTAGCAGTAGC 57.140 40.909 4.70 0.00 42.56 3.58
294 295 5.233689 GGGTACAATTAACGCTTAGCAGTAG 59.766 44.000 4.70 0.00 0.00 2.57
295 296 5.111293 GGGTACAATTAACGCTTAGCAGTA 58.889 41.667 4.70 0.00 0.00 2.74
296 297 3.937079 GGGTACAATTAACGCTTAGCAGT 59.063 43.478 4.70 0.13 0.00 4.40
297 298 3.000925 CGGGTACAATTAACGCTTAGCAG 59.999 47.826 4.70 0.00 0.00 4.24
298 299 2.931325 CGGGTACAATTAACGCTTAGCA 59.069 45.455 4.70 0.00 0.00 3.49
299 300 2.286008 GCGGGTACAATTAACGCTTAGC 60.286 50.000 0.00 0.00 46.02 3.09
300 301 3.580794 GCGGGTACAATTAACGCTTAG 57.419 47.619 0.00 0.00 46.02 2.18
304 305 1.297085 GCGCGGGTACAATTAACGC 60.297 57.895 8.83 0.00 46.04 4.84
305 306 1.256117 GTAGCGCGGGTACAATTAACG 59.744 52.381 8.83 0.00 36.64 3.18
306 307 2.283351 CAGTAGCGCGGGTACAATTAAC 59.717 50.000 8.83 0.00 38.76 2.01
307 308 2.166050 TCAGTAGCGCGGGTACAATTAA 59.834 45.455 8.83 0.00 38.76 1.40
308 309 1.750206 TCAGTAGCGCGGGTACAATTA 59.250 47.619 8.83 0.00 38.76 1.40
309 310 0.533491 TCAGTAGCGCGGGTACAATT 59.467 50.000 8.83 0.00 38.76 2.32
310 311 0.750850 ATCAGTAGCGCGGGTACAAT 59.249 50.000 8.83 4.47 38.76 2.71
311 312 1.335810 CTATCAGTAGCGCGGGTACAA 59.664 52.381 8.83 2.33 38.76 2.41
312 313 0.949397 CTATCAGTAGCGCGGGTACA 59.051 55.000 8.83 0.00 38.76 2.90
313 314 0.386985 GCTATCAGTAGCGCGGGTAC 60.387 60.000 8.83 8.96 43.49 3.34
314 315 1.954528 GCTATCAGTAGCGCGGGTA 59.045 57.895 8.83 0.00 43.49 3.69
315 316 2.728817 GCTATCAGTAGCGCGGGT 59.271 61.111 8.83 0.00 43.49 5.28
322 323 3.130693 GCGGGTATAAGGGCTATCAGTAG 59.869 52.174 0.00 0.00 0.00 2.57
323 324 3.094572 GCGGGTATAAGGGCTATCAGTA 58.905 50.000 0.00 0.00 0.00 2.74
324 325 1.900486 GCGGGTATAAGGGCTATCAGT 59.100 52.381 0.00 0.00 0.00 3.41
325 326 1.135083 CGCGGGTATAAGGGCTATCAG 60.135 57.143 0.00 0.00 0.00 2.90
326 327 0.892755 CGCGGGTATAAGGGCTATCA 59.107 55.000 0.00 0.00 0.00 2.15
327 328 0.459759 GCGCGGGTATAAGGGCTATC 60.460 60.000 8.83 0.00 42.09 2.08
328 329 1.595357 GCGCGGGTATAAGGGCTAT 59.405 57.895 8.83 0.00 42.09 2.97
329 330 3.053828 GCGCGGGTATAAGGGCTA 58.946 61.111 8.83 0.00 42.09 3.93
331 332 1.373873 GTAGCGCGGGTATAAGGGC 60.374 63.158 8.83 5.42 45.09 5.19
332 333 0.038526 CAGTAGCGCGGGTATAAGGG 60.039 60.000 8.83 0.00 0.00 3.95
333 334 0.666577 GCAGTAGCGCGGGTATAAGG 60.667 60.000 8.83 0.00 0.00 2.69
334 335 2.810486 GCAGTAGCGCGGGTATAAG 58.190 57.895 8.83 0.00 0.00 1.73
361 362 8.645110 GCCATATTAACTTAACACTACTAGGGA 58.355 37.037 0.00 0.00 0.00 4.20
362 363 8.426489 TGCCATATTAACTTAACACTACTAGGG 58.574 37.037 0.00 0.00 0.00 3.53
363 364 9.257651 GTGCCATATTAACTTAACACTACTAGG 57.742 37.037 0.00 0.00 0.00 3.02
364 365 9.811995 TGTGCCATATTAACTTAACACTACTAG 57.188 33.333 0.00 0.00 0.00 2.57
366 367 9.681062 AATGTGCCATATTAACTTAACACTACT 57.319 29.630 0.00 0.00 0.00 2.57
367 368 9.931210 GAATGTGCCATATTAACTTAACACTAC 57.069 33.333 0.00 0.00 0.00 2.73
368 369 8.822855 CGAATGTGCCATATTAACTTAACACTA 58.177 33.333 0.00 0.00 0.00 2.74
369 370 7.335924 ACGAATGTGCCATATTAACTTAACACT 59.664 33.333 0.00 0.00 0.00 3.55
370 371 7.428183 CACGAATGTGCCATATTAACTTAACAC 59.572 37.037 0.00 0.00 39.67 3.32
371 372 7.468441 CACGAATGTGCCATATTAACTTAACA 58.532 34.615 0.00 0.00 39.67 2.41
372 373 7.892445 CACGAATGTGCCATATTAACTTAAC 57.108 36.000 0.00 0.00 39.67 2.01
392 393 3.932710 GAGAATCTTTGGTATGTGCACGA 59.067 43.478 13.13 0.00 0.00 4.35
399 400 7.827819 TCGTTAAGTGAGAATCTTTGGTATG 57.172 36.000 0.00 0.00 34.92 2.39
417 418 6.514376 GCACCTCTCCAAAAAGAAATCGTTAA 60.514 38.462 0.00 0.00 0.00 2.01
427 430 5.728637 AAATTAGGCACCTCTCCAAAAAG 57.271 39.130 0.00 0.00 0.00 2.27
431 434 4.380843 TCAAAATTAGGCACCTCTCCAA 57.619 40.909 0.00 0.00 0.00 3.53
432 435 4.380843 TTCAAAATTAGGCACCTCTCCA 57.619 40.909 0.00 0.00 0.00 3.86
433 436 5.007724 CGTATTCAAAATTAGGCACCTCTCC 59.992 44.000 0.00 0.00 0.00 3.71
434 437 5.007724 CCGTATTCAAAATTAGGCACCTCTC 59.992 44.000 0.00 0.00 0.00 3.20
446 449 8.924511 ATCCAACTGATATCCGTATTCAAAAT 57.075 30.769 0.00 0.00 0.00 1.82
484 487 5.824097 AGAAGGACAATTTTTGCAAGCAATT 59.176 32.000 8.46 11.17 35.70 2.32
507 511 6.857964 CCTCTTTTGCATACAACTTGTAACAG 59.142 38.462 5.73 1.40 36.31 3.16
585 590 4.478206 TTCCAAAGGCAAACATTTGTGA 57.522 36.364 6.24 0.00 40.24 3.58
598 603 7.543172 CACATGTTAAATGTCTCATTCCAAAGG 59.457 37.037 0.00 0.00 0.00 3.11
601 606 7.523293 ACACATGTTAAATGTCTCATTCCAA 57.477 32.000 0.00 0.00 0.00 3.53
648 653 2.740981 GAGACAAACATGCCTCACTCAG 59.259 50.000 0.00 0.00 0.00 3.35
649 654 2.771089 GAGACAAACATGCCTCACTCA 58.229 47.619 0.00 0.00 0.00 3.41
650 655 1.728971 CGAGACAAACATGCCTCACTC 59.271 52.381 0.00 0.00 0.00 3.51
709 717 4.336993 CGGAGGATAGATGGCTACATACTC 59.663 50.000 0.00 0.00 37.47 2.59
710 718 4.018324 TCGGAGGATAGATGGCTACATACT 60.018 45.833 0.00 0.00 37.47 2.12
711 719 4.270834 TCGGAGGATAGATGGCTACATAC 58.729 47.826 0.00 0.00 37.47 2.39
771 807 2.238144 CAGGATGACAGGTCACCTTGAT 59.762 50.000 16.01 0.00 43.11 2.57
792 832 4.006319 GGCTCTATCATTTATGGACAGCC 58.994 47.826 0.00 0.00 31.92 4.85
793 833 3.681897 CGGCTCTATCATTTATGGACAGC 59.318 47.826 0.00 0.00 0.00 4.40
794 834 4.887748 ACGGCTCTATCATTTATGGACAG 58.112 43.478 0.00 0.00 0.00 3.51
796 836 5.050091 CACAACGGCTCTATCATTTATGGAC 60.050 44.000 0.00 0.00 0.00 4.02
798 838 4.214119 CCACAACGGCTCTATCATTTATGG 59.786 45.833 0.00 0.00 0.00 2.74
800 840 5.036117 ACCACAACGGCTCTATCATTTAT 57.964 39.130 0.00 0.00 39.03 1.40
801 841 4.161565 AGACCACAACGGCTCTATCATTTA 59.838 41.667 0.00 0.00 39.03 1.40
802 842 3.055094 AGACCACAACGGCTCTATCATTT 60.055 43.478 0.00 0.00 39.03 2.32
803 843 2.501723 AGACCACAACGGCTCTATCATT 59.498 45.455 0.00 0.00 39.03 2.57
804 844 2.111384 AGACCACAACGGCTCTATCAT 58.889 47.619 0.00 0.00 39.03 2.45
806 846 4.519730 AGTATAGACCACAACGGCTCTATC 59.480 45.833 0.00 0.00 38.26 2.08
807 847 4.278669 CAGTATAGACCACAACGGCTCTAT 59.721 45.833 0.00 0.00 39.46 1.98
808 848 3.630769 CAGTATAGACCACAACGGCTCTA 59.369 47.826 0.00 0.00 39.03 2.43
810 850 2.165845 ACAGTATAGACCACAACGGCTC 59.834 50.000 0.00 0.00 39.03 4.70
812 852 2.667473 ACAGTATAGACCACAACGGC 57.333 50.000 0.00 0.00 39.03 5.68
813 853 4.707030 TGTACAGTATAGACCACAACGG 57.293 45.455 0.00 0.00 42.50 4.44
814 854 6.035650 CCATTTGTACAGTATAGACCACAACG 59.964 42.308 0.00 0.00 0.00 4.10
815 855 6.877322 ACCATTTGTACAGTATAGACCACAAC 59.123 38.462 0.00 0.00 0.00 3.32
816 856 6.876789 CACCATTTGTACAGTATAGACCACAA 59.123 38.462 0.00 0.00 0.00 3.33
817 857 6.403049 CACCATTTGTACAGTATAGACCACA 58.597 40.000 0.00 0.00 0.00 4.17
818 858 5.293569 GCACCATTTGTACAGTATAGACCAC 59.706 44.000 0.00 0.00 0.00 4.16
819 859 5.046231 TGCACCATTTGTACAGTATAGACCA 60.046 40.000 0.00 0.00 0.00 4.02
820 860 5.424757 TGCACCATTTGTACAGTATAGACC 58.575 41.667 0.00 0.00 0.00 3.85
821 861 6.589830 CTGCACCATTTGTACAGTATAGAC 57.410 41.667 0.00 0.00 34.21 2.59
828 868 4.456911 AGATTGACTGCACCATTTGTACAG 59.543 41.667 0.00 0.00 43.00 2.74
829 869 4.397420 AGATTGACTGCACCATTTGTACA 58.603 39.130 0.00 0.00 0.00 2.90
830 870 6.494893 TTAGATTGACTGCACCATTTGTAC 57.505 37.500 0.00 0.00 0.00 2.90
831 871 6.658816 ACATTAGATTGACTGCACCATTTGTA 59.341 34.615 0.00 0.00 0.00 2.41
832 872 5.477984 ACATTAGATTGACTGCACCATTTGT 59.522 36.000 0.00 0.00 0.00 2.83
833 873 5.957798 ACATTAGATTGACTGCACCATTTG 58.042 37.500 0.00 0.00 0.00 2.32
834 874 6.594788 AACATTAGATTGACTGCACCATTT 57.405 33.333 0.00 0.00 0.00 2.32
835 875 6.886459 AGTAACATTAGATTGACTGCACCATT 59.114 34.615 0.00 0.00 0.00 3.16
836 876 6.317140 CAGTAACATTAGATTGACTGCACCAT 59.683 38.462 0.00 0.00 0.00 3.55
837 877 5.643348 CAGTAACATTAGATTGACTGCACCA 59.357 40.000 0.00 0.00 0.00 4.17
838 878 5.065218 CCAGTAACATTAGATTGACTGCACC 59.935 44.000 0.00 0.00 34.34 5.01
839 879 5.065218 CCCAGTAACATTAGATTGACTGCAC 59.935 44.000 0.00 0.00 34.34 4.57
840 880 5.185454 CCCAGTAACATTAGATTGACTGCA 58.815 41.667 0.00 0.00 34.34 4.41
841 881 5.186198 ACCCAGTAACATTAGATTGACTGC 58.814 41.667 0.00 0.00 34.34 4.40
842 882 6.406370 TGACCCAGTAACATTAGATTGACTG 58.594 40.000 0.00 0.00 35.22 3.51
843 883 6.620877 TGACCCAGTAACATTAGATTGACT 57.379 37.500 0.00 0.00 0.00 3.41
844 884 6.483640 GGATGACCCAGTAACATTAGATTGAC 59.516 42.308 0.00 0.00 34.14 3.18
845 885 6.386927 AGGATGACCCAGTAACATTAGATTGA 59.613 38.462 0.00 0.00 37.41 2.57
847 887 6.595682 CAGGATGACCCAGTAACATTAGATT 58.404 40.000 0.00 0.00 39.69 2.40
848 888 5.455326 GCAGGATGACCCAGTAACATTAGAT 60.455 44.000 0.00 0.00 39.69 1.98
849 889 4.141711 GCAGGATGACCCAGTAACATTAGA 60.142 45.833 0.00 0.00 39.69 2.10
850 890 4.130118 GCAGGATGACCCAGTAACATTAG 58.870 47.826 0.00 0.00 39.69 1.73
853 893 1.212935 GGCAGGATGACCCAGTAACAT 59.787 52.381 0.00 0.00 39.24 2.71
854 894 0.618458 GGCAGGATGACCCAGTAACA 59.382 55.000 0.00 0.00 39.24 2.41
901 1563 5.704515 TCCAGTATAGAGTATAGACGGCAAC 59.295 44.000 0.00 0.00 0.00 4.17
902 1564 5.704515 GTCCAGTATAGAGTATAGACGGCAA 59.295 44.000 0.00 0.00 0.00 4.52
903 1565 5.221783 TGTCCAGTATAGAGTATAGACGGCA 60.222 44.000 0.00 0.00 0.00 5.69
904 1566 5.122082 GTGTCCAGTATAGAGTATAGACGGC 59.878 48.000 0.00 0.00 0.00 5.68
905 1567 6.228995 TGTGTCCAGTATAGAGTATAGACGG 58.771 44.000 0.00 0.00 0.00 4.79
906 1568 7.148390 CCATGTGTCCAGTATAGAGTATAGACG 60.148 44.444 0.00 0.00 0.00 4.18
947 1609 0.616679 AGTCCGGGGCTACAAGCTTA 60.617 55.000 0.00 0.00 41.99 3.09
963 1626 6.017852 GGTGATGCCTATTAGCTTTACAAGTC 60.018 42.308 0.00 0.00 30.74 3.01
1036 1705 1.414897 CGTAGCTGTTTTCGCCGTC 59.585 57.895 0.00 0.00 0.00 4.79
1104 1776 8.981659 ACAGAATGCTGGATACAAACCTGGAG 62.982 46.154 5.47 0.00 44.93 3.86
1105 1777 7.279448 ACAGAATGCTGGATACAAACCTGGA 62.279 44.000 5.47 0.00 44.93 3.86
1120 1792 2.551459 GAGTGAAGTGCAACAGAATGCT 59.449 45.455 0.00 0.00 46.54 3.79
1124 1796 2.159099 ACGAGAGTGAAGTGCAACAGAA 60.159 45.455 0.00 0.00 46.97 3.02
1126 1798 1.858091 ACGAGAGTGAAGTGCAACAG 58.142 50.000 0.00 0.00 46.97 3.16
1378 2086 3.607370 GAACTGGACCTCCACGGCC 62.607 68.421 0.00 0.00 42.01 6.13
1459 2167 3.492756 GCGTATCTTTCCTGCTGAGATTC 59.507 47.826 0.00 0.00 32.68 2.52
1466 2174 1.521681 GCGGCGTATCTTTCCTGCT 60.522 57.895 9.37 0.00 0.00 4.24
1469 2177 0.757935 TAGGGCGGCGTATCTTTCCT 60.758 55.000 9.37 7.06 0.00 3.36
1626 2437 6.750963 CGAACGGAAAGAGTAGTAGCTAAAAT 59.249 38.462 0.00 0.00 0.00 1.82
1690 2509 8.163408 TGCCCATAATATCAACAAATAGCTAGT 58.837 33.333 0.00 0.00 0.00 2.57
1694 2513 7.605449 ACATGCCCATAATATCAACAAATAGC 58.395 34.615 0.00 0.00 0.00 2.97
1741 2560 1.512926 GCACTCGAATGTTGTGGAGT 58.487 50.000 0.00 0.00 40.19 3.85
1755 2574 3.499048 TCGTGAATCTAGTTTCGCACTC 58.501 45.455 21.20 5.64 36.88 3.51
1781 2600 1.125270 CGAACAACGATGTCACACGA 58.875 50.000 0.00 0.00 45.77 4.35
2323 3942 0.606604 TACTCTTTCACCGCCCAGTC 59.393 55.000 0.00 0.00 0.00 3.51
2330 3952 4.699257 ACAGTACCTACTACTCTTTCACCG 59.301 45.833 0.00 0.00 32.90 4.94
2507 4194 5.582689 AGGAACAACTCAAAGTCCTTTTG 57.417 39.130 0.00 0.00 46.09 2.44
2750 4478 3.831333 TGGCACACAACCACAATATGAAT 59.169 39.130 0.00 0.00 30.29 2.57
2880 4649 6.237384 CGTTCATAGAATGTTTTCATGCAAGC 60.237 38.462 0.00 0.00 40.79 4.01
3535 5334 9.424319 CTTACAATACCTGCATATACCACTAAG 57.576 37.037 0.00 0.00 0.00 2.18
3562 5361 4.150897 TCATGCCTCCCACTTACAATAC 57.849 45.455 0.00 0.00 0.00 1.89
3563 5362 6.475504 CATATCATGCCTCCCACTTACAATA 58.524 40.000 0.00 0.00 0.00 1.90
3564 5363 3.959495 ATCATGCCTCCCACTTACAAT 57.041 42.857 0.00 0.00 0.00 2.71
3565 5364 4.446167 CCATATCATGCCTCCCACTTACAA 60.446 45.833 0.00 0.00 0.00 2.41
3566 5365 3.072915 CCATATCATGCCTCCCACTTACA 59.927 47.826 0.00 0.00 0.00 2.41
3567 5366 3.073062 ACCATATCATGCCTCCCACTTAC 59.927 47.826 0.00 0.00 0.00 2.34
3568 5367 3.326521 ACCATATCATGCCTCCCACTTA 58.673 45.455 0.00 0.00 0.00 2.24
3569 5368 2.138542 ACCATATCATGCCTCCCACTT 58.861 47.619 0.00 0.00 0.00 3.16
3570 5369 1.825105 ACCATATCATGCCTCCCACT 58.175 50.000 0.00 0.00 0.00 4.00
3571 5370 2.664402 AACCATATCATGCCTCCCAC 57.336 50.000 0.00 0.00 0.00 4.61
4213 6190 2.180017 GGCGAGCTACGACGGAAA 59.820 61.111 9.32 0.00 45.77 3.13
4260 6238 5.279206 CCCATGCCAAACAAACAACTATACA 60.279 40.000 0.00 0.00 0.00 2.29
4288 6266 3.928727 ACAAGCACACAAGAATCATGG 57.071 42.857 0.00 0.00 0.00 3.66
4321 6299 1.459450 TTATTTGACCAAGGGCGAGC 58.541 50.000 0.00 0.00 0.00 5.03
4375 6353 0.742505 CCGCAGATTGTCATTGCCAT 59.257 50.000 0.00 0.00 34.42 4.40
4403 6381 3.256136 CCACCGAAGAGAGAAACACTACT 59.744 47.826 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.