Multiple sequence alignment - TraesCS7B01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G190500 chr7B 100.000 5143 0 0 1 5143 327458030 327452888 0.000000e+00 9498.0
1 TraesCS7B01G190500 chr7B 100.000 112 0 0 5531 5642 327452500 327452389 2.060000e-49 207.0
2 TraesCS7B01G190500 chr7A 90.601 1979 108 27 3091 5033 192882901 192880965 0.000000e+00 2553.0
3 TraesCS7B01G190500 chr7A 93.128 975 51 9 809 1775 192891150 192890184 0.000000e+00 1415.0
4 TraesCS7B01G190500 chr7A 85.390 924 86 22 2202 3093 192890183 192889277 0.000000e+00 913.0
5 TraesCS7B01G190500 chr7A 95.370 108 3 2 5029 5135 192880886 192880780 2.700000e-38 171.0
6 TraesCS7B01G190500 chr7D 97.547 1182 12 3 2879 4060 185179325 185178161 0.000000e+00 2006.0
7 TraesCS7B01G190500 chr7D 96.062 965 31 4 4061 5024 185178059 185177101 0.000000e+00 1565.0
8 TraesCS7B01G190500 chr7D 98.100 842 12 2 2059 2900 185180227 185179390 0.000000e+00 1463.0
9 TraesCS7B01G190500 chr7D 93.441 808 34 7 809 1602 185181616 185180814 0.000000e+00 1181.0
10 TraesCS7B01G190500 chr7D 96.560 436 12 2 1629 2063 185180818 185180385 0.000000e+00 719.0
11 TraesCS7B01G190500 chr7D 89.552 268 20 6 529 794 185181862 185181601 3.260000e-87 333.0
12 TraesCS7B01G190500 chr7D 89.216 102 11 0 4794 4895 413545588 413545689 1.650000e-25 128.0
13 TraesCS7B01G190500 chr4D 86.312 526 48 15 29 535 380872500 380873020 8.260000e-153 551.0
14 TraesCS7B01G190500 chr2A 85.047 535 65 11 6 528 172203080 172203611 1.080000e-146 531.0
15 TraesCS7B01G190500 chr2A 91.176 102 9 0 4795 4896 657520732 657520833 7.620000e-29 139.0
16 TraesCS7B01G190500 chr1D 84.587 545 66 11 1 530 481403203 481403744 5.010000e-145 525.0
17 TraesCS7B01G190500 chr2D 84.530 543 66 9 1 528 574356983 574356444 6.480000e-144 521.0
18 TraesCS7B01G190500 chr2D 84.686 542 59 10 1 528 512504658 512504127 2.330000e-143 520.0
19 TraesCS7B01G190500 chr4B 84.074 540 70 11 1 527 265778555 265778019 1.810000e-139 507.0
20 TraesCS7B01G190500 chr4A 83.829 538 67 13 6 527 544873555 544873022 1.410000e-135 494.0
21 TraesCS7B01G190500 chr5B 83.835 532 68 11 12 528 603045886 603045358 1.830000e-134 490.0
22 TraesCS7B01G190500 chr2B 83.677 533 63 18 12 528 638121864 638121340 1.100000e-131 481.0
23 TraesCS7B01G190500 chr3A 94.340 106 2 2 2637 2741 724270521 724270623 5.850000e-35 159.0
24 TraesCS7B01G190500 chr3A 89.000 100 11 0 4795 4894 661792640 661792739 2.130000e-24 124.0
25 TraesCS7B01G190500 chr5A 94.186 86 5 0 4809 4894 533944198 533944283 1.280000e-26 132.0
26 TraesCS7B01G190500 chr3B 90.000 100 10 0 4797 4896 566185025 566185124 4.590000e-26 130.0
27 TraesCS7B01G190500 chr1A 90.722 97 9 0 4798 4894 481924517 481924421 4.590000e-26 130.0
28 TraesCS7B01G190500 chr1A 87.156 109 10 4 4789 4895 481924412 481924518 2.760000e-23 121.0
29 TraesCS7B01G190500 chr6B 82.524 103 9 6 2642 2744 297533143 297533236 1.300000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G190500 chr7B 327452389 327458030 5641 True 4852.500000 9498 100.000000 1 5642 2 chr7B.!!$R1 5641
1 TraesCS7B01G190500 chr7A 192880780 192882901 2121 True 1362.000000 2553 92.985500 3091 5135 2 chr7A.!!$R1 2044
2 TraesCS7B01G190500 chr7A 192889277 192891150 1873 True 1164.000000 1415 89.259000 809 3093 2 chr7A.!!$R2 2284
3 TraesCS7B01G190500 chr7D 185177101 185181862 4761 True 1211.166667 2006 95.210333 529 5024 6 chr7D.!!$R1 4495
4 TraesCS7B01G190500 chr4D 380872500 380873020 520 False 551.000000 551 86.312000 29 535 1 chr4D.!!$F1 506
5 TraesCS7B01G190500 chr2A 172203080 172203611 531 False 531.000000 531 85.047000 6 528 1 chr2A.!!$F1 522
6 TraesCS7B01G190500 chr1D 481403203 481403744 541 False 525.000000 525 84.587000 1 530 1 chr1D.!!$F1 529
7 TraesCS7B01G190500 chr2D 574356444 574356983 539 True 521.000000 521 84.530000 1 528 1 chr2D.!!$R2 527
8 TraesCS7B01G190500 chr2D 512504127 512504658 531 True 520.000000 520 84.686000 1 528 1 chr2D.!!$R1 527
9 TraesCS7B01G190500 chr4B 265778019 265778555 536 True 507.000000 507 84.074000 1 527 1 chr4B.!!$R1 526
10 TraesCS7B01G190500 chr4A 544873022 544873555 533 True 494.000000 494 83.829000 6 527 1 chr4A.!!$R1 521
11 TraesCS7B01G190500 chr5B 603045358 603045886 528 True 490.000000 490 83.835000 12 528 1 chr5B.!!$R1 516
12 TraesCS7B01G190500 chr2B 638121340 638121864 524 True 481.000000 481 83.677000 12 528 1 chr2B.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 1.197036 CACGGAGCGAATAGATAGCGA 59.803 52.381 0.00 0.00 35.78 4.93 F
1044 1085 0.177604 TACTCCTCGTCCTCGTCCTC 59.822 60.000 0.00 0.00 38.33 3.71 F
1526 1567 1.795768 TCGGTGTGAACTCTGATTGC 58.204 50.000 0.00 0.00 0.00 3.56 F
1608 1649 2.024080 TGCCCTGGCTTGGATATTTCTT 60.024 45.455 9.97 0.00 42.51 2.52 F
2033 2075 2.333926 TCTGAATCAGTTTACCGCACG 58.666 47.619 10.36 0.00 32.61 5.34 F
3126 3447 3.350219 TGGTCAGGCTCCTTCATAAAC 57.650 47.619 0.00 0.00 0.00 2.01 F
3999 4341 5.863965 TCAAGATGTGTTTACCATCACTGA 58.136 37.500 11.36 10.32 40.93 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2016 2058 1.127951 CCACGTGCGGTAAACTGATTC 59.872 52.381 10.91 0.00 0.00 2.52 R
2028 2070 2.095213 AGTAATACAATTGCCACGTGCG 59.905 45.455 10.91 4.74 45.60 5.34 R
3101 3422 0.962855 GAAGGAGCCTGACCAAAGCC 60.963 60.000 0.00 0.00 0.00 4.35 R
3103 3424 2.503895 ATGAAGGAGCCTGACCAAAG 57.496 50.000 0.00 0.00 0.00 2.77 R
3617 3938 3.554934 ACAAGGCAGAACATTCTTGACA 58.445 40.909 8.62 0.00 38.96 3.58 R
4372 4829 1.065401 CAAAGCCTTCACTTGCAACGA 59.935 47.619 0.00 0.00 0.00 3.85 R
5588 6132 0.032815 TGATTCACACGCCGAAGACA 59.967 50.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.276868 CCAGAAATAAACACGGAGCGAATAG 60.277 44.000 0.00 0.00 0.00 1.73
27 28 6.201044 CAGAAATAAACACGGAGCGAATAGAT 59.799 38.462 0.00 0.00 0.00 1.98
32 33 1.197036 CACGGAGCGAATAGATAGCGA 59.803 52.381 0.00 0.00 35.78 4.93
53 54 5.558653 GCGAACACGGAAACAAAACTATGTA 60.559 40.000 0.00 0.00 32.02 2.29
59 60 6.518395 CACGGAAACAAAACTATGTATTGACG 59.482 38.462 0.00 0.00 32.02 4.35
167 178 8.308851 TGTGTTAGCAACATAGGGTAGTATTA 57.691 34.615 5.26 0.00 44.35 0.98
168 179 8.930527 TGTGTTAGCAACATAGGGTAGTATTAT 58.069 33.333 5.26 0.00 44.35 1.28
236 248 6.040054 GTGTGTGGTAATAAAAGTTGGTCCTT 59.960 38.462 0.00 0.00 0.00 3.36
248 260 7.410120 AAAGTTGGTCCTTAAATGATCCATC 57.590 36.000 0.00 0.00 0.00 3.51
249 261 6.078456 AGTTGGTCCTTAAATGATCCATCA 57.922 37.500 0.00 0.00 41.70 3.07
252 266 6.078456 TGGTCCTTAAATGATCCATCACTT 57.922 37.500 0.00 0.00 40.03 3.16
254 268 7.054124 TGGTCCTTAAATGATCCATCACTTAC 58.946 38.462 0.00 0.00 40.03 2.34
258 272 8.206867 TCCTTAAATGATCCATCACTTACTCTG 58.793 37.037 0.00 0.00 40.03 3.35
293 309 5.007823 CGTTATGTGTTGTTTGGTAGTTGGA 59.992 40.000 0.00 0.00 0.00 3.53
391 407 2.616376 TGTTCCATCGGAAAACACTGTG 59.384 45.455 6.19 6.19 43.86 3.66
471 492 8.637281 AACCGTTTTCGTTTTCATATTTTCTT 57.363 26.923 0.00 0.00 42.35 2.52
504 527 4.577834 TTTTCTCCGGAAAAGCGAAAAT 57.422 36.364 19.20 0.00 43.76 1.82
590 613 7.555087 TGAGGGCTTGTTTGATATTTTTATGG 58.445 34.615 0.00 0.00 0.00 2.74
594 617 9.008965 GGGCTTGTTTGATATTTTTATGGTTTT 57.991 29.630 0.00 0.00 0.00 2.43
665 688 9.699703 TTTAAAGGAAAAGAAACCATTAATCCG 57.300 29.630 0.00 0.00 32.22 4.18
677 700 5.308825 ACCATTAATCCGAACCTCATGATC 58.691 41.667 0.00 0.00 0.00 2.92
720 743 9.671279 AAAAAGAACCTCATGAATTTTGTTTCT 57.329 25.926 0.00 0.00 0.00 2.52
778 801 7.145932 ACTTACTTTTTATCCTGTGATGCAC 57.854 36.000 0.00 0.00 32.18 4.57
785 808 8.929827 TTTTTATCCTGTGATGCACATAAATG 57.070 30.769 0.20 0.00 43.71 2.32
786 809 7.643569 TTTATCCTGTGATGCACATAAATGT 57.356 32.000 0.20 0.00 43.71 2.71
787 810 6.622833 TATCCTGTGATGCACATAAATGTG 57.377 37.500 16.95 16.95 43.71 3.21
788 811 6.121590 TATCCTGTGATGCACATAAATGTGT 58.878 36.000 20.92 5.59 43.71 3.72
789 812 6.602803 TATCCTGTGATGCACATAAATGTGTT 59.397 34.615 20.92 11.30 43.71 3.32
790 813 7.201723 TATCCTGTGATGCACATAAATGTGTTC 60.202 37.037 20.92 17.83 43.71 3.18
917 954 4.605968 CGAATCGATGATGACTCAGAGTT 58.394 43.478 4.05 0.00 34.12 3.01
1033 1074 1.342175 ACCTCCTCCCTTTACTCCTCG 60.342 57.143 0.00 0.00 0.00 4.63
1039 1080 0.739561 CCCTTTACTCCTCGTCCTCG 59.260 60.000 0.00 0.00 38.55 4.63
1044 1085 0.177604 TACTCCTCGTCCTCGTCCTC 59.822 60.000 0.00 0.00 38.33 3.71
1275 1316 2.052690 CGACGTGGGGGATGACTCT 61.053 63.158 0.00 0.00 0.00 3.24
1439 1480 2.427453 TCGACTGATTTCCTCTGGCTAC 59.573 50.000 0.00 0.00 0.00 3.58
1489 1530 3.932710 TGTCGAATGTGCTAGATTTGGTC 59.067 43.478 0.00 0.00 0.00 4.02
1491 1532 5.105513 TGTCGAATGTGCTAGATTTGGTCTA 60.106 40.000 0.00 0.00 38.42 2.59
1497 1538 6.553953 TGTGCTAGATTTGGTCTACCATTA 57.446 37.500 1.96 0.00 46.97 1.90
1526 1567 1.795768 TCGGTGTGAACTCTGATTGC 58.204 50.000 0.00 0.00 0.00 3.56
1587 1628 6.372659 CACTAGCTTGACACCAGAACATAATT 59.627 38.462 1.04 0.00 0.00 1.40
1592 1633 3.245229 TGACACCAGAACATAATTGCCCT 60.245 43.478 0.00 0.00 0.00 5.19
1608 1649 2.024080 TGCCCTGGCTTGGATATTTCTT 60.024 45.455 9.97 0.00 42.51 2.52
1610 1651 4.215109 GCCCTGGCTTGGATATTTCTTAA 58.785 43.478 0.00 0.00 38.26 1.85
1614 1655 6.015095 CCCTGGCTTGGATATTTCTTAATTCC 60.015 42.308 0.00 0.00 0.00 3.01
1618 1659 7.619302 TGGCTTGGATATTTCTTAATTCCAACT 59.381 33.333 0.00 0.00 36.77 3.16
1694 1735 6.810911 AGTACTCTTGTATGCCTTATGAGTG 58.189 40.000 0.00 0.00 35.36 3.51
1799 1841 6.787085 ACAGAAGTAGATTGCTTACACAAC 57.213 37.500 0.00 0.00 31.03 3.32
1819 1861 5.048083 ACAACGAGTTTGCATATTCATGGTT 60.048 36.000 0.00 0.00 39.01 3.67
1820 1862 5.643379 ACGAGTTTGCATATTCATGGTTT 57.357 34.783 0.00 0.00 32.36 3.27
1821 1863 5.640732 ACGAGTTTGCATATTCATGGTTTC 58.359 37.500 0.00 0.00 32.36 2.78
1836 1878 7.672983 TCATGGTTTCTTGTCTCTATCAAAC 57.327 36.000 0.00 0.00 0.00 2.93
1906 1948 9.973661 TCATTATTTATCCTTTTCCACTGAGAA 57.026 29.630 0.00 0.00 0.00 2.87
2033 2075 2.333926 TCTGAATCAGTTTACCGCACG 58.666 47.619 10.36 0.00 32.61 5.34
2116 2320 8.106247 TGATGAGTTAAAACAATCCTTGGTAC 57.894 34.615 0.00 0.00 34.12 3.34
2117 2321 7.942341 TGATGAGTTAAAACAATCCTTGGTACT 59.058 33.333 0.00 0.00 34.12 2.73
2118 2322 9.444600 GATGAGTTAAAACAATCCTTGGTACTA 57.555 33.333 0.00 0.00 34.12 1.82
2296 2503 6.067263 CAGTACTATCTTACTGGCTCTGTC 57.933 45.833 0.00 0.00 43.63 3.51
2299 2506 7.499563 CAGTACTATCTTACTGGCTCTGTCTTA 59.500 40.741 0.00 0.00 43.63 2.10
2419 2639 8.498054 AATTAGATCATCGAGTGTGTCAAAAT 57.502 30.769 0.00 0.00 0.00 1.82
2445 2665 5.313280 ACCCATTGTTGTACCTTTACTGA 57.687 39.130 0.00 0.00 0.00 3.41
2480 2700 9.241919 TGATAGTTTGATTTATGCTCAAGGAAA 57.758 29.630 0.00 0.00 34.33 3.13
3101 3422 3.770263 ACAAATGAGATGCCATTCACG 57.230 42.857 0.00 0.00 35.86 4.35
3126 3447 3.350219 TGGTCAGGCTCCTTCATAAAC 57.650 47.619 0.00 0.00 0.00 2.01
3999 4341 5.863965 TCAAGATGTGTTTACCATCACTGA 58.136 37.500 11.36 10.32 40.93 3.41
4002 4344 8.100164 TCAAGATGTGTTTACCATCACTGATTA 58.900 33.333 11.36 0.00 40.93 1.75
4178 4621 5.874897 AGTATATGGTACGGTTGGCTTAA 57.125 39.130 0.00 0.00 0.00 1.85
4302 4746 6.395780 TTTTATCAGTGGTAAGGGGATTCA 57.604 37.500 0.00 0.00 0.00 2.57
4455 4912 2.236146 TCATTTGCAGGGAGTGATACGT 59.764 45.455 0.00 0.00 0.00 3.57
4494 4951 3.564053 TGCATGCCATATCTGAACTCA 57.436 42.857 16.68 0.00 0.00 3.41
4549 5006 4.206375 TCATGGCTTCACTTTGAAAGACA 58.794 39.130 12.53 0.00 35.73 3.41
4552 5009 6.660521 TCATGGCTTCACTTTGAAAGACATAT 59.339 34.615 12.53 0.00 35.73 1.78
4647 5104 4.214758 GCTTTACCAGTTTTGTGATACCGT 59.785 41.667 0.00 0.00 0.00 4.83
4823 5280 6.497259 ACTCTCTCTGTCCCAAAATAAGTGTA 59.503 38.462 0.00 0.00 0.00 2.90
4824 5281 7.016268 ACTCTCTCTGTCCCAAAATAAGTGTAA 59.984 37.037 0.00 0.00 0.00 2.41
4849 5306 9.826574 AACTGATTCAGTACAAAGTTAGTACAA 57.173 29.630 19.27 0.00 44.62 2.41
4901 5358 2.100916 CGACGGAGGGAGTACAATTCAT 59.899 50.000 0.00 0.00 0.00 2.57
4902 5359 3.430374 CGACGGAGGGAGTACAATTCATT 60.430 47.826 0.00 0.00 0.00 2.57
4903 5360 4.120589 GACGGAGGGAGTACAATTCATTC 58.879 47.826 0.00 0.00 0.00 2.67
4984 5445 0.882042 CGCAGCTAGCCACATTAGGG 60.882 60.000 12.13 0.00 41.38 3.53
5078 5622 3.262420 GTGCTACTGTACATTGTGGGAG 58.738 50.000 0.00 0.00 0.00 4.30
5079 5623 2.903784 TGCTACTGTACATTGTGGGAGT 59.096 45.455 0.00 1.49 0.00 3.85
5083 5627 5.334879 GCTACTGTACATTGTGGGAGTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
5084 5628 3.317993 ACTGTACATTGTGGGAGTTTTGC 59.682 43.478 0.00 0.00 0.00 3.68
5085 5629 3.291584 TGTACATTGTGGGAGTTTTGCA 58.708 40.909 0.00 0.00 0.00 4.08
5108 5652 8.551205 TGCAAGATCAAACGTATTGAATAGATC 58.449 33.333 14.24 8.90 31.55 2.75
5135 5679 2.064014 GAAAGTGGTACCTTCGAACCG 58.936 52.381 14.36 0.00 38.70 4.44
5136 5680 1.043022 AAGTGGTACCTTCGAACCGT 58.957 50.000 14.36 0.00 38.70 4.83
5137 5681 0.316204 AGTGGTACCTTCGAACCGTG 59.684 55.000 14.36 0.00 38.70 4.94
5138 5682 1.005867 TGGTACCTTCGAACCGTGC 60.006 57.895 14.36 0.00 38.70 5.34
5139 5683 1.005867 GGTACCTTCGAACCGTGCA 60.006 57.895 4.06 0.00 0.00 4.57
5140 5684 1.287041 GGTACCTTCGAACCGTGCAC 61.287 60.000 6.82 6.82 0.00 4.57
5141 5685 0.319297 GTACCTTCGAACCGTGCACT 60.319 55.000 16.19 0.00 0.00 4.40
5142 5686 0.390124 TACCTTCGAACCGTGCACTT 59.610 50.000 16.19 2.68 0.00 3.16
5553 6097 3.949842 AGATTTTCAGAAAAGCAGGGC 57.050 42.857 22.66 5.37 39.14 5.19
5554 6098 3.504375 AGATTTTCAGAAAAGCAGGGCT 58.496 40.909 22.66 2.26 42.56 5.19
5564 6108 2.967270 AGCAGGGCTTGAATGAACC 58.033 52.632 0.00 0.00 33.89 3.62
5565 6109 0.613012 AGCAGGGCTTGAATGAACCC 60.613 55.000 0.00 0.00 43.17 4.11
5566 6110 0.899717 GCAGGGCTTGAATGAACCCA 60.900 55.000 0.00 0.00 45.45 4.51
5567 6111 0.890683 CAGGGCTTGAATGAACCCAC 59.109 55.000 0.00 0.00 45.45 4.61
5568 6112 0.251787 AGGGCTTGAATGAACCCACC 60.252 55.000 0.00 0.00 45.45 4.61
5569 6113 0.541764 GGGCTTGAATGAACCCACCA 60.542 55.000 0.00 0.00 42.33 4.17
5570 6114 1.337118 GGCTTGAATGAACCCACCAA 58.663 50.000 0.00 0.00 0.00 3.67
5571 6115 1.000843 GGCTTGAATGAACCCACCAAC 59.999 52.381 0.00 0.00 0.00 3.77
5572 6116 1.963515 GCTTGAATGAACCCACCAACT 59.036 47.619 0.00 0.00 0.00 3.16
5573 6117 2.365293 GCTTGAATGAACCCACCAACTT 59.635 45.455 0.00 0.00 0.00 2.66
5574 6118 3.799917 GCTTGAATGAACCCACCAACTTG 60.800 47.826 0.00 0.00 0.00 3.16
5575 6119 3.025322 TGAATGAACCCACCAACTTGT 57.975 42.857 0.00 0.00 0.00 3.16
5576 6120 2.692557 TGAATGAACCCACCAACTTGTG 59.307 45.455 0.00 0.00 35.98 3.33
5577 6121 2.452600 ATGAACCCACCAACTTGTGT 57.547 45.000 0.00 0.00 34.35 3.72
5578 6122 1.468985 TGAACCCACCAACTTGTGTG 58.531 50.000 4.31 4.31 34.35 3.82
5586 6130 3.190535 CCACCAACTTGTGTGGTATTAGC 59.809 47.826 15.93 0.00 45.61 3.09
5587 6131 4.072131 CACCAACTTGTGTGGTATTAGCT 58.928 43.478 0.00 0.00 34.10 3.32
5588 6132 4.518970 CACCAACTTGTGTGGTATTAGCTT 59.481 41.667 0.00 0.00 34.10 3.74
5589 6133 4.518970 ACCAACTTGTGTGGTATTAGCTTG 59.481 41.667 0.00 0.00 33.61 4.01
5590 6134 4.518970 CCAACTTGTGTGGTATTAGCTTGT 59.481 41.667 0.00 0.00 0.00 3.16
5591 6135 5.334879 CCAACTTGTGTGGTATTAGCTTGTC 60.335 44.000 0.00 0.00 0.00 3.18
5592 6136 5.228945 ACTTGTGTGGTATTAGCTTGTCT 57.771 39.130 0.00 0.00 0.00 3.41
5593 6137 5.621193 ACTTGTGTGGTATTAGCTTGTCTT 58.379 37.500 0.00 0.00 0.00 3.01
5594 6138 5.701290 ACTTGTGTGGTATTAGCTTGTCTTC 59.299 40.000 0.00 0.00 0.00 2.87
5595 6139 4.242475 TGTGTGGTATTAGCTTGTCTTCG 58.758 43.478 0.00 0.00 0.00 3.79
5596 6140 3.617263 GTGTGGTATTAGCTTGTCTTCGG 59.383 47.826 0.00 0.00 0.00 4.30
5597 6141 2.608090 GTGGTATTAGCTTGTCTTCGGC 59.392 50.000 0.00 0.00 0.00 5.54
5598 6142 1.859080 GGTATTAGCTTGTCTTCGGCG 59.141 52.381 0.00 0.00 0.00 6.46
5599 6143 2.537401 GTATTAGCTTGTCTTCGGCGT 58.463 47.619 6.85 0.00 0.00 5.68
5600 6144 1.359848 ATTAGCTTGTCTTCGGCGTG 58.640 50.000 6.85 1.06 0.00 5.34
5601 6145 0.032952 TTAGCTTGTCTTCGGCGTGT 59.967 50.000 6.85 0.00 0.00 4.49
5602 6146 0.666274 TAGCTTGTCTTCGGCGTGTG 60.666 55.000 6.85 0.00 0.00 3.82
5603 6147 1.954146 GCTTGTCTTCGGCGTGTGA 60.954 57.895 6.85 0.62 0.00 3.58
5604 6148 1.495584 GCTTGTCTTCGGCGTGTGAA 61.496 55.000 6.85 0.00 0.00 3.18
5605 6149 1.148310 CTTGTCTTCGGCGTGTGAAT 58.852 50.000 6.85 0.00 0.00 2.57
5606 6150 1.126846 CTTGTCTTCGGCGTGTGAATC 59.873 52.381 6.85 0.00 0.00 2.52
5607 6151 0.032815 TGTCTTCGGCGTGTGAATCA 59.967 50.000 6.85 0.00 0.00 2.57
5608 6152 1.337728 TGTCTTCGGCGTGTGAATCAT 60.338 47.619 6.85 0.00 0.00 2.45
5609 6153 1.061131 GTCTTCGGCGTGTGAATCATG 59.939 52.381 6.85 0.00 36.25 3.07
5617 6161 3.206034 CGTGTGAATCATGCAATGTGT 57.794 42.857 0.00 0.00 46.80 3.72
5618 6162 3.567530 CGTGTGAATCATGCAATGTGTT 58.432 40.909 0.00 0.00 46.80 3.32
5619 6163 4.721142 CGTGTGAATCATGCAATGTGTTA 58.279 39.130 0.00 0.00 46.80 2.41
5620 6164 4.789629 CGTGTGAATCATGCAATGTGTTAG 59.210 41.667 0.00 0.00 46.80 2.34
5621 6165 5.097529 GTGTGAATCATGCAATGTGTTAGG 58.902 41.667 0.00 0.00 46.80 2.69
5622 6166 4.766373 TGTGAATCATGCAATGTGTTAGGT 59.234 37.500 0.00 0.00 46.80 3.08
5623 6167 5.942826 TGTGAATCATGCAATGTGTTAGGTA 59.057 36.000 0.00 0.00 46.80 3.08
5624 6168 6.128035 TGTGAATCATGCAATGTGTTAGGTAC 60.128 38.462 0.00 0.00 46.80 3.34
5625 6169 5.356751 TGAATCATGCAATGTGTTAGGTACC 59.643 40.000 2.73 2.73 46.80 3.34
5626 6170 3.616219 TCATGCAATGTGTTAGGTACCC 58.384 45.455 8.74 0.00 46.80 3.69
5627 6171 3.265737 TCATGCAATGTGTTAGGTACCCT 59.734 43.478 8.74 0.00 46.80 4.34
5628 6172 3.799432 TGCAATGTGTTAGGTACCCTT 57.201 42.857 8.74 0.00 34.61 3.95
5629 6173 4.107127 TGCAATGTGTTAGGTACCCTTT 57.893 40.909 8.74 0.00 34.61 3.11
5630 6174 3.823873 TGCAATGTGTTAGGTACCCTTTG 59.176 43.478 8.74 8.56 34.61 2.77
5631 6175 3.192633 GCAATGTGTTAGGTACCCTTTGG 59.807 47.826 8.74 0.00 34.61 3.28
5632 6176 4.658063 CAATGTGTTAGGTACCCTTTGGA 58.342 43.478 8.74 0.00 34.61 3.53
5633 6177 5.261216 CAATGTGTTAGGTACCCTTTGGAT 58.739 41.667 8.74 0.00 34.61 3.41
5634 6178 5.530176 ATGTGTTAGGTACCCTTTGGATT 57.470 39.130 8.74 0.00 34.61 3.01
5635 6179 6.645884 ATGTGTTAGGTACCCTTTGGATTA 57.354 37.500 8.74 0.00 34.61 1.75
5636 6180 6.451292 TGTGTTAGGTACCCTTTGGATTAA 57.549 37.500 8.74 0.00 34.61 1.40
5637 6181 6.850234 TGTGTTAGGTACCCTTTGGATTAAA 58.150 36.000 8.74 0.00 34.61 1.52
5638 6182 7.296098 TGTGTTAGGTACCCTTTGGATTAAAA 58.704 34.615 8.74 0.00 34.61 1.52
5639 6183 7.449086 TGTGTTAGGTACCCTTTGGATTAAAAG 59.551 37.037 8.74 0.00 36.99 2.27
5640 6184 7.666804 GTGTTAGGTACCCTTTGGATTAAAAGA 59.333 37.037 8.74 0.00 39.12 2.52
5641 6185 8.226112 TGTTAGGTACCCTTTGGATTAAAAGAA 58.774 33.333 8.74 0.00 39.12 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.799137 TTTGTTTCCGTGTTCGCTATC 57.201 42.857 0.00 0.00 35.54 2.08
27 28 2.937799 AGTTTTGTTTCCGTGTTCGCTA 59.062 40.909 0.00 0.00 35.54 4.26
32 33 7.858879 GTCAATACATAGTTTTGTTTCCGTGTT 59.141 33.333 0.00 0.00 0.00 3.32
53 54 3.575256 GGGGTTTTTAAGTTCCCGTCAAT 59.425 43.478 0.00 0.00 40.72 2.57
59 60 5.305902 TGATTCAAGGGGTTTTTAAGTTCCC 59.694 40.000 0.00 0.00 39.22 3.97
134 145 8.436778 ACCCTATGTTGCTAACACAATCATATA 58.563 33.333 4.23 0.00 45.50 0.86
140 151 6.062258 ACTACCCTATGTTGCTAACACAAT 57.938 37.500 4.23 0.00 45.50 2.71
167 178 8.461249 ACGGAATTGTCATGTACTACTACTAT 57.539 34.615 0.00 0.00 0.00 2.12
168 179 7.870509 ACGGAATTGTCATGTACTACTACTA 57.129 36.000 0.00 0.00 0.00 1.82
169 180 6.770746 ACGGAATTGTCATGTACTACTACT 57.229 37.500 0.00 0.00 0.00 2.57
236 248 7.129457 AGCAGAGTAAGTGATGGATCATTTA 57.871 36.000 0.00 1.56 37.77 1.40
248 260 3.366121 CGACACAATGAGCAGAGTAAGTG 59.634 47.826 0.00 0.00 0.00 3.16
249 261 3.005897 ACGACACAATGAGCAGAGTAAGT 59.994 43.478 0.00 0.00 0.00 2.24
252 266 3.660501 AACGACACAATGAGCAGAGTA 57.339 42.857 0.00 0.00 0.00 2.59
254 268 3.928992 ACATAACGACACAATGAGCAGAG 59.071 43.478 0.00 0.00 0.00 3.35
258 272 4.151070 CAACACATAACGACACAATGAGC 58.849 43.478 0.00 0.00 0.00 4.26
293 309 1.614317 GGCCCATGTCTGCTTTGTAGT 60.614 52.381 0.00 0.00 0.00 2.73
305 321 5.162637 TCCATTTCTACTATAGGCCCATGT 58.837 41.667 0.00 0.00 0.00 3.21
391 407 3.001838 GTGGAAACGGAAACAAAAATGGC 59.998 43.478 0.00 0.00 0.00 4.40
438 456 2.259505 ACGAAAACGGTTTGCGAAAA 57.740 40.000 33.94 0.00 0.00 2.29
442 460 1.912110 TGAAAACGAAAACGGTTTGCG 59.088 42.857 27.70 27.70 35.99 4.85
471 492 4.411927 TCCGGAGAAAAATGGAAATGGAA 58.588 39.130 0.00 0.00 0.00 3.53
504 527 7.847711 TTAGGGATGAAAATGAAGTGGAAAA 57.152 32.000 0.00 0.00 0.00 2.29
548 571 7.781324 AGCCCTCATAAAAGAAAATTGAGAA 57.219 32.000 0.00 0.00 36.72 2.87
550 573 7.381323 ACAAGCCCTCATAAAAGAAAATTGAG 58.619 34.615 0.00 0.00 34.86 3.02
553 576 8.210265 TCAAACAAGCCCTCATAAAAGAAAATT 58.790 29.630 0.00 0.00 0.00 1.82
567 590 7.494922 ACCATAAAAATATCAAACAAGCCCT 57.505 32.000 0.00 0.00 0.00 5.19
614 637 7.612677 ACTGTATGAAAGTACCAGTTCTTAGG 58.387 38.462 0.00 0.00 0.00 2.69
617 640 9.841295 TTAAACTGTATGAAAGTACCAGTTCTT 57.159 29.630 10.53 4.37 31.22 2.52
620 643 9.063615 CCTTTAAACTGTATGAAAGTACCAGTT 57.936 33.333 5.82 5.82 32.48 3.16
622 645 8.842358 TCCTTTAAACTGTATGAAAGTACCAG 57.158 34.615 0.00 0.00 0.00 4.00
623 646 9.629878 TTTCCTTTAAACTGTATGAAAGTACCA 57.370 29.630 0.00 0.00 0.00 3.25
655 678 5.555017 AGATCATGAGGTTCGGATTAATGG 58.445 41.667 0.09 0.00 0.00 3.16
693 716 9.920826 GAAACAAAATTCATGAGGTTCTTTTTC 57.079 29.630 0.00 0.00 0.00 2.29
720 743 2.817258 GGTGTGTGCCATAGCTGTAAAA 59.183 45.455 0.00 0.00 40.80 1.52
754 777 6.714810 TGTGCATCACAGGATAAAAAGTAAGT 59.285 34.615 0.00 0.00 39.62 2.24
755 778 7.144722 TGTGCATCACAGGATAAAAAGTAAG 57.855 36.000 0.00 0.00 39.62 2.34
832 855 7.284489 TGCTCTAATCCTGCGGTTATTAAAAAT 59.716 33.333 0.00 0.00 0.00 1.82
844 867 4.361451 AAAAACATGCTCTAATCCTGCG 57.639 40.909 0.00 0.00 0.00 5.18
1033 1074 2.442458 GAGGGGGAGGACGAGGAC 60.442 72.222 0.00 0.00 0.00 3.85
1039 1080 3.471806 GGCGAAGAGGGGGAGGAC 61.472 72.222 0.00 0.00 0.00 3.85
1424 1465 1.576356 CGCAGTAGCCAGAGGAAATC 58.424 55.000 0.00 0.00 37.52 2.17
1459 1500 1.464608 AGCACATTCGACACCAAATCG 59.535 47.619 0.00 0.00 41.00 3.34
1489 1530 5.522460 ACACCGAATTTCACGATAATGGTAG 59.478 40.000 0.00 0.00 0.00 3.18
1491 1532 4.094294 CACACCGAATTTCACGATAATGGT 59.906 41.667 0.00 0.00 0.00 3.55
1497 1538 3.399330 AGTTCACACCGAATTTCACGAT 58.601 40.909 0.00 0.00 35.63 3.73
1526 1567 6.831727 TTCAATGATGCTGTCAAAACAAAG 57.168 33.333 0.00 0.00 40.97 2.77
1587 1628 1.570501 AGAAATATCCAAGCCAGGGCA 59.429 47.619 13.63 0.00 44.88 5.36
1592 1633 7.619302 AGTTGGAATTAAGAAATATCCAAGCCA 59.381 33.333 5.83 0.00 39.81 4.75
1608 1649 7.709182 CGATCCACATAACTACAGTTGGAATTA 59.291 37.037 4.86 0.00 35.56 1.40
1610 1651 6.049149 CGATCCACATAACTACAGTTGGAAT 58.951 40.000 4.86 0.00 35.56 3.01
1614 1655 5.062183 CACACGATCCACATAACTACAGTTG 59.938 44.000 4.86 0.00 38.90 3.16
1618 1659 4.461431 ACTCACACGATCCACATAACTACA 59.539 41.667 0.00 0.00 0.00 2.74
1621 1662 4.495422 GAACTCACACGATCCACATAACT 58.505 43.478 0.00 0.00 0.00 2.24
1694 1735 7.388460 TCACTAGACAGCTAGGTAAACTTAC 57.612 40.000 0.00 0.00 46.80 2.34
1799 1841 5.883661 AGAAACCATGAATATGCAAACTCG 58.116 37.500 0.00 0.00 32.79 4.18
1819 1861 5.702670 CAGCTTGGTTTGATAGAGACAAGAA 59.297 40.000 0.00 0.00 37.98 2.52
1820 1862 5.240891 CAGCTTGGTTTGATAGAGACAAGA 58.759 41.667 0.00 0.00 37.98 3.02
1821 1863 4.394300 CCAGCTTGGTTTGATAGAGACAAG 59.606 45.833 0.00 0.00 38.57 3.16
1836 1878 3.119708 CCGAGAAGAAATTTCCAGCTTGG 60.120 47.826 14.61 16.45 39.43 3.61
1977 2019 6.064846 TGAAGAAGTCAAAGAATTGCAGAC 57.935 37.500 0.00 0.00 36.45 3.51
2016 2058 1.127951 CCACGTGCGGTAAACTGATTC 59.872 52.381 10.91 0.00 0.00 2.52
2028 2070 2.095213 AGTAATACAATTGCCACGTGCG 59.905 45.455 10.91 4.74 45.60 5.34
2033 2075 7.141100 ACTGTGTAAGTAATACAATTGCCAC 57.859 36.000 5.05 0.00 45.81 5.01
2480 2700 5.500234 TGCTCATGCCAGTTATTAGACTTT 58.500 37.500 0.00 0.00 38.71 2.66
2935 3256 9.606631 CTAAACTCTAAATCCTCAAGTGCTAAT 57.393 33.333 0.00 0.00 0.00 1.73
3101 3422 0.962855 GAAGGAGCCTGACCAAAGCC 60.963 60.000 0.00 0.00 0.00 4.35
3103 3424 2.503895 ATGAAGGAGCCTGACCAAAG 57.496 50.000 0.00 0.00 0.00 2.77
3617 3938 3.554934 ACAAGGCAGAACATTCTTGACA 58.445 40.909 8.62 0.00 38.96 3.58
4002 4344 8.123639 TGAAGCTAAGAGACTGTTAATAGTGT 57.876 34.615 9.86 5.59 0.00 3.55
4178 4621 7.176340 CCACTTCAAGGAAAGAGAGAAATCATT 59.824 37.037 0.00 0.00 0.00 2.57
4282 4726 7.888514 AATATGAATCCCCTTACCACTGATA 57.111 36.000 0.00 0.00 0.00 2.15
4302 4746 9.331282 GCCAGAAGTCAACTAACAGAATAATAT 57.669 33.333 0.00 0.00 0.00 1.28
4372 4829 1.065401 CAAAGCCTTCACTTGCAACGA 59.935 47.619 0.00 0.00 0.00 3.85
4455 4912 3.628032 TGCATACGGTGTTCAAGAAAACA 59.372 39.130 5.56 0.00 36.82 2.83
4494 4951 4.779386 AGATATATCCATTCCCCAGGTGT 58.221 43.478 9.18 0.00 0.00 4.16
4552 5009 7.928307 ACTGTTCGGTAGAAGTAACTACATA 57.072 36.000 0.00 0.00 42.91 2.29
4647 5104 4.502604 GGAAGTTACAGGCTCTGTACAACA 60.503 45.833 12.79 0.00 45.13 3.33
4823 5280 9.826574 TTGTACTAACTTTGTACTGAATCAGTT 57.173 29.630 21.83 3.97 42.59 3.16
4849 5306 5.539048 AGTGTCGCTGATTTAGTACAACTT 58.461 37.500 0.00 0.00 0.00 2.66
4901 5358 9.373603 CATTTCCAAAAGATCAATATGCAAGAA 57.626 29.630 0.00 0.00 0.00 2.52
4902 5359 8.751242 TCATTTCCAAAAGATCAATATGCAAGA 58.249 29.630 0.00 0.00 0.00 3.02
4903 5360 8.936070 TCATTTCCAAAAGATCAATATGCAAG 57.064 30.769 0.00 0.00 0.00 4.01
4918 5378 4.832266 ACATGGCACTACTTCATTTCCAAA 59.168 37.500 0.00 0.00 0.00 3.28
5033 5494 6.491403 ACCATGCTTACAGTTTCTTCAATCTT 59.509 34.615 0.00 0.00 0.00 2.40
5034 5495 6.006449 ACCATGCTTACAGTTTCTTCAATCT 58.994 36.000 0.00 0.00 0.00 2.40
5035 5496 6.088824 CACCATGCTTACAGTTTCTTCAATC 58.911 40.000 0.00 0.00 0.00 2.67
5036 5497 5.565439 GCACCATGCTTACAGTTTCTTCAAT 60.565 40.000 0.00 0.00 40.96 2.57
5078 5622 6.984740 TCAATACGTTTGATCTTGCAAAAC 57.015 33.333 0.00 0.36 39.26 2.43
5079 5623 9.340695 CTATTCAATACGTTTGATCTTGCAAAA 57.659 29.630 0.00 0.00 39.26 2.44
5083 5627 7.737744 CGATCTATTCAATACGTTTGATCTTGC 59.262 37.037 11.98 0.00 0.00 4.01
5084 5628 8.968242 TCGATCTATTCAATACGTTTGATCTTG 58.032 33.333 11.98 6.44 0.00 3.02
5085 5629 9.698309 ATCGATCTATTCAATACGTTTGATCTT 57.302 29.630 11.98 5.67 0.00 2.40
5108 5652 3.124636 CGAAGGTACCACTTTCCAAATCG 59.875 47.826 15.94 4.33 31.35 3.34
5530 6074 5.539955 AGCCCTGCTTTTCTGAAAATCTTAA 59.460 36.000 15.30 0.00 33.89 1.85
5531 6075 5.079643 AGCCCTGCTTTTCTGAAAATCTTA 58.920 37.500 15.30 3.08 33.89 2.10
5532 6076 3.899980 AGCCCTGCTTTTCTGAAAATCTT 59.100 39.130 15.30 0.00 33.89 2.40
5533 6077 3.504375 AGCCCTGCTTTTCTGAAAATCT 58.496 40.909 15.30 4.67 33.89 2.40
5534 6078 3.949842 AGCCCTGCTTTTCTGAAAATC 57.050 42.857 15.30 12.07 33.89 2.17
5546 6090 0.613012 GGGTTCATTCAAGCCCTGCT 60.613 55.000 0.00 0.00 45.77 4.24
5547 6091 1.893062 GGGTTCATTCAAGCCCTGC 59.107 57.895 0.00 0.00 45.77 4.85
5552 6096 1.963515 AGTTGGTGGGTTCATTCAAGC 59.036 47.619 0.00 0.00 0.00 4.01
5553 6097 3.384467 ACAAGTTGGTGGGTTCATTCAAG 59.616 43.478 7.96 0.00 0.00 3.02
5554 6098 3.131933 CACAAGTTGGTGGGTTCATTCAA 59.868 43.478 7.96 0.00 35.13 2.69
5555 6099 2.692557 CACAAGTTGGTGGGTTCATTCA 59.307 45.455 7.96 0.00 35.13 2.57
5556 6100 2.693074 ACACAAGTTGGTGGGTTCATTC 59.307 45.455 7.96 0.00 43.08 2.67
5557 6101 2.430332 CACACAAGTTGGTGGGTTCATT 59.570 45.455 7.96 0.00 43.08 2.57
5558 6102 2.031120 CACACAAGTTGGTGGGTTCAT 58.969 47.619 7.96 0.00 43.08 2.57
5559 6103 1.468985 CACACAAGTTGGTGGGTTCA 58.531 50.000 7.96 0.00 43.08 3.18
5565 6109 4.072131 AGCTAATACCACACAAGTTGGTG 58.928 43.478 7.96 11.81 44.35 4.17
5566 6110 4.367039 AGCTAATACCACACAAGTTGGT 57.633 40.909 7.96 0.00 39.55 3.67
5567 6111 4.518970 ACAAGCTAATACCACACAAGTTGG 59.481 41.667 7.96 0.00 0.00 3.77
5568 6112 5.470098 AGACAAGCTAATACCACACAAGTTG 59.530 40.000 0.00 0.00 0.00 3.16
5569 6113 5.621193 AGACAAGCTAATACCACACAAGTT 58.379 37.500 0.00 0.00 0.00 2.66
5570 6114 5.228945 AGACAAGCTAATACCACACAAGT 57.771 39.130 0.00 0.00 0.00 3.16
5571 6115 5.163953 CGAAGACAAGCTAATACCACACAAG 60.164 44.000 0.00 0.00 0.00 3.16
5572 6116 4.688879 CGAAGACAAGCTAATACCACACAA 59.311 41.667 0.00 0.00 0.00 3.33
5573 6117 4.242475 CGAAGACAAGCTAATACCACACA 58.758 43.478 0.00 0.00 0.00 3.72
5574 6118 3.617263 CCGAAGACAAGCTAATACCACAC 59.383 47.826 0.00 0.00 0.00 3.82
5575 6119 3.857052 CCGAAGACAAGCTAATACCACA 58.143 45.455 0.00 0.00 0.00 4.17
5576 6120 2.608090 GCCGAAGACAAGCTAATACCAC 59.392 50.000 0.00 0.00 0.00 4.16
5577 6121 2.737359 CGCCGAAGACAAGCTAATACCA 60.737 50.000 0.00 0.00 0.00 3.25
5578 6122 1.859080 CGCCGAAGACAAGCTAATACC 59.141 52.381 0.00 0.00 0.00 2.73
5579 6123 2.281762 CACGCCGAAGACAAGCTAATAC 59.718 50.000 0.00 0.00 0.00 1.89
5580 6124 2.094390 ACACGCCGAAGACAAGCTAATA 60.094 45.455 0.00 0.00 0.00 0.98
5581 6125 1.337823 ACACGCCGAAGACAAGCTAAT 60.338 47.619 0.00 0.00 0.00 1.73
5582 6126 0.032952 ACACGCCGAAGACAAGCTAA 59.967 50.000 0.00 0.00 0.00 3.09
5583 6127 0.666274 CACACGCCGAAGACAAGCTA 60.666 55.000 0.00 0.00 0.00 3.32
5584 6128 1.956170 CACACGCCGAAGACAAGCT 60.956 57.895 0.00 0.00 0.00 3.74
5585 6129 1.495584 TTCACACGCCGAAGACAAGC 61.496 55.000 0.00 0.00 0.00 4.01
5586 6130 1.126846 GATTCACACGCCGAAGACAAG 59.873 52.381 0.00 0.00 0.00 3.16
5587 6131 1.144969 GATTCACACGCCGAAGACAA 58.855 50.000 0.00 0.00 0.00 3.18
5588 6132 0.032815 TGATTCACACGCCGAAGACA 59.967 50.000 0.00 0.00 0.00 3.41
5589 6133 1.061131 CATGATTCACACGCCGAAGAC 59.939 52.381 0.00 0.00 0.00 3.01
5590 6134 1.358877 CATGATTCACACGCCGAAGA 58.641 50.000 0.00 0.00 0.00 2.87
5591 6135 0.247814 GCATGATTCACACGCCGAAG 60.248 55.000 0.00 0.00 31.04 3.79
5592 6136 0.952984 TGCATGATTCACACGCCGAA 60.953 50.000 0.00 0.00 36.84 4.30
5593 6137 0.952984 TTGCATGATTCACACGCCGA 60.953 50.000 0.00 0.00 36.84 5.54
5594 6138 0.099259 ATTGCATGATTCACACGCCG 59.901 50.000 0.00 0.00 36.84 6.46
5595 6139 1.135315 ACATTGCATGATTCACACGCC 60.135 47.619 0.00 0.00 36.84 5.68
5596 6140 1.915350 CACATTGCATGATTCACACGC 59.085 47.619 0.00 0.00 38.25 5.34
5597 6141 3.206034 ACACATTGCATGATTCACACG 57.794 42.857 0.00 0.00 0.00 4.49
5598 6142 5.097529 CCTAACACATTGCATGATTCACAC 58.902 41.667 0.00 0.00 0.00 3.82
5599 6143 4.766373 ACCTAACACATTGCATGATTCACA 59.234 37.500 0.00 0.00 0.00 3.58
5600 6144 5.314923 ACCTAACACATTGCATGATTCAC 57.685 39.130 0.00 0.00 0.00 3.18
5601 6145 5.356751 GGTACCTAACACATTGCATGATTCA 59.643 40.000 4.06 0.00 0.00 2.57
5602 6146 5.821204 GGTACCTAACACATTGCATGATTC 58.179 41.667 4.06 0.00 0.00 2.52
5603 6147 5.835113 GGTACCTAACACATTGCATGATT 57.165 39.130 4.06 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.