Multiple sequence alignment - TraesCS7B01G190400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G190400 chr7B 100.000 3083 0 0 3053 6135 327426421 327429503 0.000000e+00 5694.0
1 TraesCS7B01G190400 chr7B 100.000 2739 0 0 1 2739 327423369 327426107 0.000000e+00 5059.0
2 TraesCS7B01G190400 chr7B 81.507 438 73 7 13 446 747882103 747881670 2.720000e-93 353.0
3 TraesCS7B01G190400 chr7D 95.553 2631 74 16 3510 6135 185162937 185165529 0.000000e+00 4170.0
4 TraesCS7B01G190400 chr7D 92.547 1449 69 14 1328 2739 185161071 185162517 0.000000e+00 2041.0
5 TraesCS7B01G190400 chr7D 93.149 759 27 12 577 1334 185159282 185160016 0.000000e+00 1090.0
6 TraesCS7B01G190400 chr7D 89.286 420 23 10 3055 3472 185162537 185162936 1.970000e-139 507.0
7 TraesCS7B01G190400 chr7D 100.000 31 0 0 5745 5775 621258405 621258435 2.390000e-04 58.4
8 TraesCS7B01G190400 chr7A 93.476 2529 81 25 3053 5548 192870342 192872819 0.000000e+00 3679.0
9 TraesCS7B01G190400 chr7A 90.656 1434 67 20 1350 2739 192868914 192870324 0.000000e+00 1844.0
10 TraesCS7B01G190400 chr7A 92.911 790 35 10 503 1274 192867871 192868657 0.000000e+00 1129.0
11 TraesCS7B01G190400 chr7A 94.170 446 21 3 5690 6135 192873274 192873714 0.000000e+00 675.0
12 TraesCS7B01G190400 chr7A 98.039 102 1 1 5532 5632 192873148 192873249 6.320000e-40 176.0
13 TraesCS7B01G190400 chr7A 83.704 135 12 5 3217 3341 95612618 95612752 1.080000e-22 119.0
14 TraesCS7B01G190400 chr7A 90.789 76 3 2 5517 5591 192873205 192873277 1.410000e-16 99.0
15 TraesCS7B01G190400 chr2A 90.508 453 38 3 1 452 689637743 689638191 1.470000e-165 593.0
16 TraesCS7B01G190400 chr2A 89.035 456 42 3 1 451 768952815 768953267 5.370000e-155 558.0
17 TraesCS7B01G190400 chr6D 88.571 490 44 9 10 492 10884079 10884563 8.860000e-163 584.0
18 TraesCS7B01G190400 chr6D 82.018 456 72 8 1 452 151943974 151944423 4.490000e-101 379.0
19 TraesCS7B01G190400 chr1A 88.713 443 45 3 10 451 121037633 121037195 2.520000e-148 536.0
20 TraesCS7B01G190400 chr1A 82.222 135 12 7 3217 3341 513167273 513167405 8.410000e-19 106.0
21 TraesCS7B01G190400 chr6A 91.093 247 19 2 1 246 573634693 573634937 1.270000e-86 331.0
22 TraesCS7B01G190400 chr6A 88.421 190 9 6 314 490 573635245 573635434 3.720000e-52 217.0
23 TraesCS7B01G190400 chr4B 95.570 158 5 1 4176 4333 466322316 466322471 1.020000e-62 252.0
24 TraesCS7B01G190400 chr3B 94.410 161 7 2 294 453 825570910 825571069 4.750000e-61 246.0
25 TraesCS7B01G190400 chr3B 73.441 433 91 22 29 449 472604999 472604579 2.310000e-29 141.0
26 TraesCS7B01G190400 chr2D 88.679 159 10 4 3217 3369 29124729 29124573 2.920000e-43 187.0
27 TraesCS7B01G190400 chr5B 85.535 159 15 6 3217 3369 22556526 22556682 6.370000e-35 159.0
28 TraesCS7B01G190400 chr5A 83.704 135 11 6 3217 3341 68866695 68866828 3.890000e-22 117.0
29 TraesCS7B01G190400 chr5A 82.963 135 12 6 3217 3341 548905572 548905439 1.810000e-20 111.0
30 TraesCS7B01G190400 chr3A 83.704 135 11 6 3217 3341 292296626 292296493 3.890000e-22 117.0
31 TraesCS7B01G190400 chr3A 83.704 135 11 6 3217 3341 730258130 730258263 3.890000e-22 117.0
32 TraesCS7B01G190400 chr3D 94.231 52 3 0 5632 5683 536743397 536743448 5.100000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G190400 chr7B 327423369 327429503 6134 False 5376.5 5694 100.000000 1 6135 2 chr7B.!!$F1 6134
1 TraesCS7B01G190400 chr7D 185159282 185165529 6247 False 1952.0 4170 92.633750 577 6135 4 chr7D.!!$F2 5558
2 TraesCS7B01G190400 chr7A 192867871 192873714 5843 False 1267.0 3679 93.340167 503 6135 6 chr7A.!!$F2 5632
3 TraesCS7B01G190400 chr6A 573634693 573635434 741 False 274.0 331 89.757000 1 490 2 chr6A.!!$F1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 436 0.034767 AAAACCCTAACCCTAGGCGC 60.035 55.0 2.05 0.0 43.25 6.53 F
499 500 0.534203 GGACCCGCTGTCAAGTTGAA 60.534 55.0 7.25 0.0 46.38 2.69 F
1308 1328 0.037590 TGTTGTACACATCTGCCCCC 59.962 55.0 0.00 0.0 0.00 5.40 F
1412 2494 0.250166 AGGGTTTGGGAACGAGAACG 60.250 55.0 0.00 0.0 45.75 3.95 F
1686 2793 0.679505 TTCTCCCTGTCTTGTGACCG 59.320 55.0 0.00 0.0 42.28 4.79 F
3292 4425 0.179111 TAGCCTGTATGACACTGCGC 60.179 55.0 0.00 0.0 32.80 6.09 F
4609 5992 0.755686 GAGCAGACCATCCTTCGGAT 59.244 55.0 0.00 0.0 44.21 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1309 0.328258 AGGGGGCAGATGTGTACAAC 59.672 55.000 0.0 0.0 0.0 3.32 R
2076 3184 0.459489 GCAGGTTTGTTTGAGGTGCA 59.541 50.000 0.0 0.0 0.0 4.57 R
2589 3707 1.294659 CTTCAACCTGCCTCGTGAGC 61.295 60.000 0.0 0.0 0.0 4.26 R
3052 4179 1.749033 GGATACCAGAGGAAGGCGG 59.251 63.158 0.0 0.0 0.0 6.13 R
3482 4623 1.169661 CCACAGTTTGCCACGCCTAA 61.170 55.000 0.0 0.0 0.0 2.69 R
4666 6049 1.196104 TGTAGGGTGGCTGGTGGTAC 61.196 60.000 0.0 0.0 0.0 3.34 R
5966 7725 0.465705 TGCCTCCTTGCTTCCTATCG 59.534 55.000 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.599991 TGAACGCATGCTTGACGAGT 60.600 50.000 17.13 0.71 0.00 4.18
27 28 1.336424 TGAACGCATGCTTGACGAGTA 60.336 47.619 17.13 0.00 0.00 2.59
41 42 1.601419 CGAGTAGGCGTGGGGAGAAA 61.601 60.000 0.00 0.00 0.00 2.52
47 48 0.811281 GGCGTGGGGAGAAAGATTTG 59.189 55.000 0.00 0.00 0.00 2.32
48 49 0.171231 GCGTGGGGAGAAAGATTTGC 59.829 55.000 0.00 0.00 0.00 3.68
49 50 0.811281 CGTGGGGAGAAAGATTTGCC 59.189 55.000 0.00 0.00 0.00 4.52
50 51 0.811281 GTGGGGAGAAAGATTTGCCG 59.189 55.000 0.00 0.00 0.00 5.69
51 52 0.695924 TGGGGAGAAAGATTTGCCGA 59.304 50.000 0.00 0.00 0.00 5.54
52 53 1.095600 GGGGAGAAAGATTTGCCGAC 58.904 55.000 0.00 0.00 0.00 4.79
53 54 0.727398 GGGAGAAAGATTTGCCGACG 59.273 55.000 0.00 0.00 0.00 5.12
54 55 1.674817 GGGAGAAAGATTTGCCGACGA 60.675 52.381 0.00 0.00 0.00 4.20
55 56 1.393883 GGAGAAAGATTTGCCGACGAC 59.606 52.381 0.00 0.00 0.00 4.34
56 57 2.066262 GAGAAAGATTTGCCGACGACA 58.934 47.619 0.00 0.00 0.00 4.35
57 58 2.478894 GAGAAAGATTTGCCGACGACAA 59.521 45.455 0.00 0.00 0.00 3.18
58 59 2.223377 AGAAAGATTTGCCGACGACAAC 59.777 45.455 0.00 0.00 0.00 3.32
59 60 0.872388 AAGATTTGCCGACGACAACC 59.128 50.000 0.00 0.00 0.00 3.77
60 61 0.953960 AGATTTGCCGACGACAACCC 60.954 55.000 0.00 0.00 0.00 4.11
61 62 1.228003 ATTTGCCGACGACAACCCA 60.228 52.632 0.00 0.00 0.00 4.51
62 63 1.512156 ATTTGCCGACGACAACCCAC 61.512 55.000 0.00 0.00 0.00 4.61
63 64 2.596553 TTTGCCGACGACAACCCACT 62.597 55.000 0.00 0.00 0.00 4.00
64 65 2.280592 GCCGACGACAACCCACTT 60.281 61.111 0.00 0.00 0.00 3.16
65 66 2.315386 GCCGACGACAACCCACTTC 61.315 63.158 0.00 0.00 0.00 3.01
66 67 1.068417 CCGACGACAACCCACTTCA 59.932 57.895 0.00 0.00 0.00 3.02
67 68 0.320421 CCGACGACAACCCACTTCAT 60.320 55.000 0.00 0.00 0.00 2.57
68 69 0.790207 CGACGACAACCCACTTCATG 59.210 55.000 0.00 0.00 0.00 3.07
69 70 1.872237 CGACGACAACCCACTTCATGT 60.872 52.381 0.00 0.00 0.00 3.21
70 71 1.798813 GACGACAACCCACTTCATGTC 59.201 52.381 0.00 0.00 38.98 3.06
72 73 2.163818 GACAACCCACTTCATGTCGA 57.836 50.000 0.00 0.00 33.62 4.20
73 74 2.699954 GACAACCCACTTCATGTCGAT 58.300 47.619 0.00 0.00 33.62 3.59
74 75 2.673368 GACAACCCACTTCATGTCGATC 59.327 50.000 0.00 0.00 33.62 3.69
75 76 2.303022 ACAACCCACTTCATGTCGATCT 59.697 45.455 0.00 0.00 0.00 2.75
76 77 3.244561 ACAACCCACTTCATGTCGATCTT 60.245 43.478 0.00 0.00 0.00 2.40
77 78 3.252974 ACCCACTTCATGTCGATCTTC 57.747 47.619 0.00 0.00 0.00 2.87
78 79 2.196749 CCCACTTCATGTCGATCTTCG 58.803 52.381 0.00 0.00 42.10 3.79
79 80 2.417379 CCCACTTCATGTCGATCTTCGT 60.417 50.000 0.00 0.00 41.35 3.85
80 81 2.854777 CCACTTCATGTCGATCTTCGTC 59.145 50.000 0.00 0.00 41.35 4.20
81 82 2.854777 CACTTCATGTCGATCTTCGTCC 59.145 50.000 0.00 0.00 41.35 4.79
82 83 2.755655 ACTTCATGTCGATCTTCGTCCT 59.244 45.455 0.00 0.00 41.35 3.85
83 84 3.193691 ACTTCATGTCGATCTTCGTCCTT 59.806 43.478 0.00 0.00 41.35 3.36
84 85 3.150848 TCATGTCGATCTTCGTCCTTG 57.849 47.619 0.00 0.00 41.35 3.61
85 86 2.159240 TCATGTCGATCTTCGTCCTTGG 60.159 50.000 0.00 0.00 41.35 3.61
86 87 1.541379 TGTCGATCTTCGTCCTTGGA 58.459 50.000 0.00 0.00 41.35 3.53
87 88 2.100197 TGTCGATCTTCGTCCTTGGAT 58.900 47.619 0.00 0.00 41.35 3.41
88 89 2.099263 TGTCGATCTTCGTCCTTGGATC 59.901 50.000 0.00 0.00 41.35 3.36
89 90 2.359531 GTCGATCTTCGTCCTTGGATCT 59.640 50.000 0.00 0.00 41.35 2.75
90 91 2.359214 TCGATCTTCGTCCTTGGATCTG 59.641 50.000 0.00 0.00 41.35 2.90
91 92 2.544694 CGATCTTCGTCCTTGGATCTGG 60.545 54.545 0.00 0.00 34.72 3.86
92 93 2.231716 TCTTCGTCCTTGGATCTGGA 57.768 50.000 0.00 0.00 0.00 3.86
93 94 2.752030 TCTTCGTCCTTGGATCTGGAT 58.248 47.619 6.07 0.00 34.58 3.41
94 95 2.695666 TCTTCGTCCTTGGATCTGGATC 59.304 50.000 2.24 2.24 34.58 3.36
95 96 2.159179 TCGTCCTTGGATCTGGATCA 57.841 50.000 11.93 0.00 39.54 2.92
96 97 2.682594 TCGTCCTTGGATCTGGATCAT 58.317 47.619 11.93 0.00 39.54 2.45
97 98 2.630098 TCGTCCTTGGATCTGGATCATC 59.370 50.000 11.93 0.00 39.54 2.92
98 99 2.366590 CGTCCTTGGATCTGGATCATCA 59.633 50.000 11.93 0.32 39.54 3.07
99 100 3.181462 CGTCCTTGGATCTGGATCATCAA 60.181 47.826 11.93 7.28 39.54 2.57
100 101 4.684214 CGTCCTTGGATCTGGATCATCAAA 60.684 45.833 11.93 0.00 39.54 2.69
101 102 4.578105 GTCCTTGGATCTGGATCATCAAAC 59.422 45.833 11.93 2.42 39.54 2.93
102 103 4.227982 TCCTTGGATCTGGATCATCAAACA 59.772 41.667 11.93 0.00 39.54 2.83
103 104 4.337555 CCTTGGATCTGGATCATCAAACAC 59.662 45.833 11.93 0.00 39.54 3.32
104 105 4.573021 TGGATCTGGATCATCAAACACA 57.427 40.909 11.93 0.00 39.54 3.72
105 106 4.920999 TGGATCTGGATCATCAAACACAA 58.079 39.130 11.93 0.00 39.54 3.33
106 107 5.323581 TGGATCTGGATCATCAAACACAAA 58.676 37.500 11.93 0.00 39.54 2.83
107 108 5.183713 TGGATCTGGATCATCAAACACAAAC 59.816 40.000 11.93 0.00 39.54 2.93
108 109 5.393461 GGATCTGGATCATCAAACACAAACC 60.393 44.000 11.93 0.00 39.54 3.27
109 110 4.468713 TCTGGATCATCAAACACAAACCA 58.531 39.130 0.00 0.00 0.00 3.67
110 111 4.892345 TCTGGATCATCAAACACAAACCAA 59.108 37.500 0.00 0.00 0.00 3.67
111 112 4.942852 TGGATCATCAAACACAAACCAAC 58.057 39.130 0.00 0.00 0.00 3.77
112 113 3.980775 GGATCATCAAACACAAACCAACG 59.019 43.478 0.00 0.00 0.00 4.10
113 114 3.428746 TCATCAAACACAAACCAACGG 57.571 42.857 0.00 0.00 0.00 4.44
114 115 1.857837 CATCAAACACAAACCAACGGC 59.142 47.619 0.00 0.00 0.00 5.68
115 116 1.178276 TCAAACACAAACCAACGGCT 58.822 45.000 0.00 0.00 0.00 5.52
116 117 1.546476 TCAAACACAAACCAACGGCTT 59.454 42.857 0.00 0.00 0.00 4.35
117 118 1.923864 CAAACACAAACCAACGGCTTC 59.076 47.619 0.00 0.00 0.00 3.86
118 119 0.458260 AACACAAACCAACGGCTTCC 59.542 50.000 0.00 0.00 0.00 3.46
119 120 0.395173 ACACAAACCAACGGCTTCCT 60.395 50.000 0.00 0.00 0.00 3.36
120 121 0.744281 CACAAACCAACGGCTTCCTT 59.256 50.000 0.00 0.00 0.00 3.36
121 122 1.029681 ACAAACCAACGGCTTCCTTC 58.970 50.000 0.00 0.00 0.00 3.46
122 123 1.318576 CAAACCAACGGCTTCCTTCT 58.681 50.000 0.00 0.00 0.00 2.85
123 124 1.266989 CAAACCAACGGCTTCCTTCTC 59.733 52.381 0.00 0.00 0.00 2.87
124 125 0.250770 AACCAACGGCTTCCTTCTCC 60.251 55.000 0.00 0.00 0.00 3.71
128 129 2.970639 CGGCTTCCTTCTCCGTCA 59.029 61.111 0.00 0.00 38.47 4.35
129 130 1.292223 CGGCTTCCTTCTCCGTCAA 59.708 57.895 0.00 0.00 38.47 3.18
130 131 1.014564 CGGCTTCCTTCTCCGTCAAC 61.015 60.000 0.00 0.00 38.47 3.18
131 132 1.014564 GGCTTCCTTCTCCGTCAACG 61.015 60.000 0.00 0.00 39.44 4.10
132 133 1.627550 GCTTCCTTCTCCGTCAACGC 61.628 60.000 0.00 0.00 38.18 4.84
133 134 1.005394 TTCCTTCTCCGTCAACGCC 60.005 57.895 0.00 0.00 38.18 5.68
134 135 1.750341 TTCCTTCTCCGTCAACGCCA 61.750 55.000 0.00 0.00 38.18 5.69
135 136 1.738099 CCTTCTCCGTCAACGCCAG 60.738 63.158 0.00 0.00 38.18 4.85
136 137 2.357034 TTCTCCGTCAACGCCAGC 60.357 61.111 0.00 0.00 38.18 4.85
137 138 3.876589 TTCTCCGTCAACGCCAGCC 62.877 63.158 0.00 0.00 38.18 4.85
156 157 3.781307 CCCCCATCTTCGCCGACA 61.781 66.667 0.00 0.00 0.00 4.35
157 158 2.202932 CCCCATCTTCGCCGACAG 60.203 66.667 0.00 0.00 0.00 3.51
158 159 2.202932 CCCATCTTCGCCGACAGG 60.203 66.667 0.00 0.00 41.62 4.00
159 160 2.202932 CCATCTTCGCCGACAGGG 60.203 66.667 0.00 0.00 38.20 4.45
160 161 2.721167 CCATCTTCGCCGACAGGGA 61.721 63.158 0.00 0.00 38.47 4.20
161 162 1.519455 CATCTTCGCCGACAGGGAC 60.519 63.158 0.00 0.00 37.12 4.46
162 163 3.064987 ATCTTCGCCGACAGGGACG 62.065 63.158 0.00 0.00 37.12 4.79
168 169 4.379243 CCGACAGGGACGCTGCTT 62.379 66.667 18.71 0.75 38.47 3.91
169 170 2.811317 CGACAGGGACGCTGCTTC 60.811 66.667 18.71 9.34 0.00 3.86
170 171 2.435059 GACAGGGACGCTGCTTCC 60.435 66.667 18.71 16.22 0.00 3.46
171 172 2.925170 ACAGGGACGCTGCTTCCT 60.925 61.111 22.45 11.47 33.17 3.36
172 173 2.125350 CAGGGACGCTGCTTCCTC 60.125 66.667 22.45 13.63 33.17 3.71
173 174 3.394836 AGGGACGCTGCTTCCTCC 61.395 66.667 22.45 8.90 33.17 4.30
174 175 4.821589 GGGACGCTGCTTCCTCCG 62.822 72.222 22.45 0.00 33.17 4.63
175 176 3.760035 GGACGCTGCTTCCTCCGA 61.760 66.667 17.11 0.00 0.00 4.55
176 177 2.202676 GACGCTGCTTCCTCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
177 178 3.708220 GACGCTGCTTCCTCCGAGG 62.708 68.421 8.30 8.30 36.46 4.63
178 179 3.764466 CGCTGCTTCCTCCGAGGT 61.764 66.667 14.36 0.00 36.53 3.85
179 180 2.185608 GCTGCTTCCTCCGAGGTC 59.814 66.667 14.36 5.86 36.53 3.85
180 181 2.355193 GCTGCTTCCTCCGAGGTCT 61.355 63.158 14.36 0.00 36.53 3.85
181 182 1.893919 GCTGCTTCCTCCGAGGTCTT 61.894 60.000 14.36 0.00 36.53 3.01
182 183 0.108424 CTGCTTCCTCCGAGGTCTTG 60.108 60.000 14.36 4.71 36.53 3.02
183 184 1.448717 GCTTCCTCCGAGGTCTTGC 60.449 63.158 14.36 10.29 36.53 4.01
184 185 1.219393 CTTCCTCCGAGGTCTTGCC 59.781 63.158 14.36 0.00 36.53 4.52
185 186 1.535444 TTCCTCCGAGGTCTTGCCA 60.535 57.895 14.36 0.00 40.61 4.92
186 187 0.909610 TTCCTCCGAGGTCTTGCCAT 60.910 55.000 14.36 0.00 40.61 4.40
187 188 1.144936 CCTCCGAGGTCTTGCCATC 59.855 63.158 6.24 0.00 40.61 3.51
188 189 1.333636 CCTCCGAGGTCTTGCCATCT 61.334 60.000 6.24 0.00 40.61 2.90
189 190 0.179089 CTCCGAGGTCTTGCCATCTG 60.179 60.000 0.00 0.00 40.61 2.90
190 191 0.904865 TCCGAGGTCTTGCCATCTGT 60.905 55.000 0.00 0.00 40.61 3.41
191 192 0.460987 CCGAGGTCTTGCCATCTGTC 60.461 60.000 0.00 0.00 40.61 3.51
192 193 0.803768 CGAGGTCTTGCCATCTGTCG 60.804 60.000 0.00 0.00 40.61 4.35
193 194 0.460987 GAGGTCTTGCCATCTGTCGG 60.461 60.000 0.00 0.00 40.61 4.79
194 195 1.450312 GGTCTTGCCATCTGTCGGG 60.450 63.158 0.00 0.00 37.17 5.14
195 196 1.450312 GTCTTGCCATCTGTCGGGG 60.450 63.158 0.00 0.00 0.00 5.73
196 197 1.612146 TCTTGCCATCTGTCGGGGA 60.612 57.895 0.00 0.00 0.00 4.81
197 198 1.450312 CTTGCCATCTGTCGGGGAC 60.450 63.158 0.00 0.00 0.00 4.46
198 199 1.903877 CTTGCCATCTGTCGGGGACT 61.904 60.000 0.00 0.00 33.15 3.85
199 200 1.899437 TTGCCATCTGTCGGGGACTC 61.899 60.000 0.00 0.00 33.15 3.36
200 201 2.060980 GCCATCTGTCGGGGACTCT 61.061 63.158 0.00 0.00 33.15 3.24
201 202 1.819229 CCATCTGTCGGGGACTCTG 59.181 63.158 0.00 0.00 33.15 3.35
202 203 0.684479 CCATCTGTCGGGGACTCTGA 60.684 60.000 0.00 0.00 33.15 3.27
203 204 1.186200 CATCTGTCGGGGACTCTGAA 58.814 55.000 0.00 0.00 33.15 3.02
204 205 1.135915 CATCTGTCGGGGACTCTGAAG 59.864 57.143 0.00 0.00 33.15 3.02
205 206 0.404426 TCTGTCGGGGACTCTGAAGA 59.596 55.000 0.00 0.00 33.15 2.87
206 207 1.006043 TCTGTCGGGGACTCTGAAGAT 59.994 52.381 0.00 0.00 33.15 2.40
207 208 1.407258 CTGTCGGGGACTCTGAAGATC 59.593 57.143 0.00 0.00 33.15 2.75
208 209 0.382515 GTCGGGGACTCTGAAGATCG 59.617 60.000 0.00 0.00 31.59 3.69
209 210 1.066587 CGGGGACTCTGAAGATCGC 59.933 63.158 0.00 0.00 0.00 4.58
210 211 1.443828 GGGGACTCTGAAGATCGCC 59.556 63.158 8.82 8.82 38.17 5.54
211 212 1.045911 GGGGACTCTGAAGATCGCCT 61.046 60.000 13.63 0.00 41.14 5.52
212 213 0.103937 GGGACTCTGAAGATCGCCTG 59.896 60.000 0.00 0.00 0.00 4.85
213 214 0.820871 GGACTCTGAAGATCGCCTGT 59.179 55.000 0.00 0.00 0.00 4.00
214 215 1.205893 GGACTCTGAAGATCGCCTGTT 59.794 52.381 0.00 0.00 0.00 3.16
215 216 2.535331 GACTCTGAAGATCGCCTGTTC 58.465 52.381 0.00 0.00 0.00 3.18
216 217 1.135257 ACTCTGAAGATCGCCTGTTCG 60.135 52.381 0.00 0.00 29.78 3.95
217 218 0.888619 TCTGAAGATCGCCTGTTCGT 59.111 50.000 0.00 0.00 29.78 3.85
218 219 1.135373 TCTGAAGATCGCCTGTTCGTC 60.135 52.381 0.00 0.00 29.78 4.20
219 220 0.888619 TGAAGATCGCCTGTTCGTCT 59.111 50.000 0.00 0.00 29.78 4.18
220 221 1.272490 TGAAGATCGCCTGTTCGTCTT 59.728 47.619 0.00 0.00 34.81 3.01
221 222 1.656095 GAAGATCGCCTGTTCGTCTTG 59.344 52.381 0.00 0.00 33.46 3.02
222 223 0.603569 AGATCGCCTGTTCGTCTTGT 59.396 50.000 0.00 0.00 0.00 3.16
223 224 0.992802 GATCGCCTGTTCGTCTTGTC 59.007 55.000 0.00 0.00 0.00 3.18
224 225 0.389948 ATCGCCTGTTCGTCTTGTCC 60.390 55.000 0.00 0.00 0.00 4.02
225 226 1.006102 CGCCTGTTCGTCTTGTCCT 60.006 57.895 0.00 0.00 0.00 3.85
226 227 1.009389 CGCCTGTTCGTCTTGTCCTC 61.009 60.000 0.00 0.00 0.00 3.71
227 228 0.670854 GCCTGTTCGTCTTGTCCTCC 60.671 60.000 0.00 0.00 0.00 4.30
228 229 0.388649 CCTGTTCGTCTTGTCCTCCG 60.389 60.000 0.00 0.00 0.00 4.63
229 230 1.006571 TGTTCGTCTTGTCCTCCGC 60.007 57.895 0.00 0.00 0.00 5.54
230 231 1.737008 GTTCGTCTTGTCCTCCGCC 60.737 63.158 0.00 0.00 0.00 6.13
231 232 1.906824 TTCGTCTTGTCCTCCGCCT 60.907 57.895 0.00 0.00 0.00 5.52
232 233 1.874345 TTCGTCTTGTCCTCCGCCTC 61.874 60.000 0.00 0.00 0.00 4.70
233 234 2.579738 GTCTTGTCCTCCGCCTCC 59.420 66.667 0.00 0.00 0.00 4.30
234 235 2.683933 TCTTGTCCTCCGCCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
235 236 3.787001 CTTGTCCTCCGCCTCCCC 61.787 72.222 0.00 0.00 0.00 4.81
245 246 4.570874 GCCTCCCCCGCCTTCATC 62.571 72.222 0.00 0.00 0.00 2.92
246 247 4.241555 CCTCCCCCGCCTTCATCG 62.242 72.222 0.00 0.00 0.00 3.84
247 248 4.241555 CTCCCCCGCCTTCATCGG 62.242 72.222 0.00 0.00 46.05 4.18
252 253 2.510906 CCGCCTTCATCGGGGATT 59.489 61.111 0.00 0.00 42.99 3.01
253 254 1.893808 CCGCCTTCATCGGGGATTG 60.894 63.158 0.00 0.00 42.99 2.67
254 255 1.153168 CGCCTTCATCGGGGATTGT 60.153 57.895 0.00 0.00 39.19 2.71
255 256 0.748005 CGCCTTCATCGGGGATTGTT 60.748 55.000 0.00 0.00 39.19 2.83
256 257 1.474330 GCCTTCATCGGGGATTGTTT 58.526 50.000 0.00 0.00 0.00 2.83
257 258 1.405463 GCCTTCATCGGGGATTGTTTC 59.595 52.381 0.00 0.00 0.00 2.78
258 259 2.024414 CCTTCATCGGGGATTGTTTCC 58.976 52.381 0.00 0.00 44.62 3.13
259 260 2.357154 CCTTCATCGGGGATTGTTTCCT 60.357 50.000 0.00 0.00 44.75 3.36
260 261 2.710096 TCATCGGGGATTGTTTCCTC 57.290 50.000 0.00 0.00 44.75 3.71
264 265 3.478540 GGGGATTGTTTCCTCGGAG 57.521 57.895 0.00 0.00 44.75 4.63
265 266 0.618981 GGGGATTGTTTCCTCGGAGT 59.381 55.000 4.02 0.00 44.75 3.85
266 267 1.407025 GGGGATTGTTTCCTCGGAGTC 60.407 57.143 4.02 0.00 44.75 3.36
267 268 1.641577 GGATTGTTTCCTCGGAGTCG 58.358 55.000 4.02 0.00 41.78 4.18
268 269 1.000145 GATTGTTTCCTCGGAGTCGC 59.000 55.000 4.02 0.00 36.13 5.19
269 270 0.391263 ATTGTTTCCTCGGAGTCGCC 60.391 55.000 4.02 0.00 36.13 5.54
279 280 4.803426 GAGTCGCCGCCACAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
283 284 4.473520 CGCCGCCACAGGAGGAAT 62.474 66.667 10.16 0.00 45.77 3.01
284 285 2.514824 GCCGCCACAGGAGGAATC 60.515 66.667 10.16 0.00 45.77 2.52
285 286 2.190578 CCGCCACAGGAGGAATCC 59.809 66.667 0.00 0.00 45.77 3.01
286 287 2.370445 CCGCCACAGGAGGAATCCT 61.370 63.158 0.00 0.00 45.77 3.24
287 288 2.317149 CCGCCACAGGAGGAATCCTC 62.317 65.000 20.70 20.70 45.77 3.71
310 311 0.739561 CCCCCTACTCGAAGAAGACG 59.260 60.000 0.00 0.00 34.09 4.18
311 312 0.100861 CCCCTACTCGAAGAAGACGC 59.899 60.000 0.00 0.00 34.09 5.19
312 313 0.100861 CCCTACTCGAAGAAGACGCC 59.899 60.000 0.00 0.00 34.09 5.68
313 314 0.809385 CCTACTCGAAGAAGACGCCA 59.191 55.000 0.00 0.00 34.09 5.69
314 315 1.405821 CCTACTCGAAGAAGACGCCAT 59.594 52.381 0.00 0.00 34.09 4.40
315 316 2.455032 CTACTCGAAGAAGACGCCATG 58.545 52.381 0.00 0.00 34.09 3.66
316 317 0.888619 ACTCGAAGAAGACGCCATGA 59.111 50.000 0.00 0.00 34.09 3.07
317 318 1.135257 ACTCGAAGAAGACGCCATGAG 60.135 52.381 0.00 0.00 34.09 2.90
318 319 0.458543 TCGAAGAAGACGCCATGAGC 60.459 55.000 0.00 0.00 38.52 4.26
319 320 0.737367 CGAAGAAGACGCCATGAGCA 60.737 55.000 0.00 0.00 44.04 4.26
320 321 0.723981 GAAGAAGACGCCATGAGCAC 59.276 55.000 0.00 0.00 44.04 4.40
321 322 0.674895 AAGAAGACGCCATGAGCACC 60.675 55.000 0.00 0.00 44.04 5.01
322 323 1.078848 GAAGACGCCATGAGCACCT 60.079 57.895 0.00 0.00 44.04 4.00
323 324 0.175760 GAAGACGCCATGAGCACCTA 59.824 55.000 0.00 0.00 44.04 3.08
324 325 0.176680 AAGACGCCATGAGCACCTAG 59.823 55.000 0.00 0.00 44.04 3.02
325 326 0.972983 AGACGCCATGAGCACCTAGT 60.973 55.000 0.00 0.00 44.04 2.57
326 327 0.528684 GACGCCATGAGCACCTAGTC 60.529 60.000 0.00 0.00 44.04 2.59
327 328 1.227380 CGCCATGAGCACCTAGTCC 60.227 63.158 0.00 0.00 44.04 3.85
328 329 1.907739 GCCATGAGCACCTAGTCCA 59.092 57.895 0.00 0.00 42.97 4.02
329 330 0.253044 GCCATGAGCACCTAGTCCAA 59.747 55.000 0.00 0.00 42.97 3.53
330 331 1.133976 GCCATGAGCACCTAGTCCAAT 60.134 52.381 0.00 0.00 42.97 3.16
331 332 2.104792 GCCATGAGCACCTAGTCCAATA 59.895 50.000 0.00 0.00 42.97 1.90
332 333 3.805108 GCCATGAGCACCTAGTCCAATAG 60.805 52.174 0.00 0.00 42.97 1.73
333 334 3.244353 CCATGAGCACCTAGTCCAATAGG 60.244 52.174 0.00 0.00 46.70 2.57
334 335 2.398588 TGAGCACCTAGTCCAATAGGG 58.601 52.381 5.14 0.00 45.75 3.53
335 336 2.292918 TGAGCACCTAGTCCAATAGGGT 60.293 50.000 5.14 0.00 45.75 4.34
336 337 3.052414 TGAGCACCTAGTCCAATAGGGTA 60.052 47.826 5.14 0.00 45.75 3.69
337 338 3.574826 GAGCACCTAGTCCAATAGGGTAG 59.425 52.174 5.14 0.00 45.75 3.18
338 339 2.037381 GCACCTAGTCCAATAGGGTAGC 59.963 54.545 5.14 2.68 45.75 3.58
339 340 2.633481 CACCTAGTCCAATAGGGTAGCC 59.367 54.545 1.60 1.60 45.75 3.93
340 341 2.249214 ACCTAGTCCAATAGGGTAGCCA 59.751 50.000 14.62 0.00 45.75 4.75
341 342 3.311103 ACCTAGTCCAATAGGGTAGCCAA 60.311 47.826 14.62 0.00 45.75 4.52
342 343 3.714798 CCTAGTCCAATAGGGTAGCCAAA 59.285 47.826 14.62 0.52 39.00 3.28
343 344 3.646736 AGTCCAATAGGGTAGCCAAAC 57.353 47.619 14.62 1.87 38.11 2.93
344 345 2.093128 AGTCCAATAGGGTAGCCAAACG 60.093 50.000 14.62 0.00 38.11 3.60
345 346 1.021968 CCAATAGGGTAGCCAAACGC 58.978 55.000 14.62 0.00 37.98 4.84
346 347 1.680555 CCAATAGGGTAGCCAAACGCA 60.681 52.381 14.62 0.00 41.38 5.24
347 348 1.670811 CAATAGGGTAGCCAAACGCAG 59.329 52.381 14.62 0.00 41.38 5.18
348 349 0.180406 ATAGGGTAGCCAAACGCAGG 59.820 55.000 14.62 0.00 41.38 4.85
349 350 0.905809 TAGGGTAGCCAAACGCAGGA 60.906 55.000 14.62 0.00 41.38 3.86
350 351 2.038837 GGGTAGCCAAACGCAGGAC 61.039 63.158 5.96 0.00 41.38 3.85
351 352 2.038837 GGTAGCCAAACGCAGGACC 61.039 63.158 0.00 0.00 41.38 4.46
352 353 1.302192 GTAGCCAAACGCAGGACCA 60.302 57.895 0.00 0.00 41.38 4.02
353 354 0.887387 GTAGCCAAACGCAGGACCAA 60.887 55.000 0.00 0.00 41.38 3.67
354 355 0.605319 TAGCCAAACGCAGGACCAAG 60.605 55.000 0.00 0.00 41.38 3.61
355 356 2.644992 CCAAACGCAGGACCAAGC 59.355 61.111 0.00 0.00 0.00 4.01
356 357 2.644992 CAAACGCAGGACCAAGCC 59.355 61.111 0.00 0.00 0.00 4.35
357 358 2.192861 CAAACGCAGGACCAAGCCA 61.193 57.895 0.00 0.00 0.00 4.75
358 359 1.454847 AAACGCAGGACCAAGCCAA 60.455 52.632 0.00 0.00 0.00 4.52
359 360 1.455383 AAACGCAGGACCAAGCCAAG 61.455 55.000 0.00 0.00 0.00 3.61
360 361 3.058160 CGCAGGACCAAGCCAAGG 61.058 66.667 0.00 0.00 0.00 3.61
361 362 2.436109 GCAGGACCAAGCCAAGGA 59.564 61.111 0.00 0.00 0.00 3.36
362 363 1.000396 GCAGGACCAAGCCAAGGAT 60.000 57.895 0.00 0.00 0.00 3.24
363 364 1.318158 GCAGGACCAAGCCAAGGATG 61.318 60.000 0.00 0.00 0.00 3.51
364 365 1.000396 AGGACCAAGCCAAGGATGC 60.000 57.895 0.00 0.00 0.00 3.91
365 366 1.304381 GGACCAAGCCAAGGATGCA 60.304 57.895 0.00 0.00 0.00 3.96
366 367 1.318158 GGACCAAGCCAAGGATGCAG 61.318 60.000 0.00 0.00 0.00 4.41
367 368 1.941999 GACCAAGCCAAGGATGCAGC 61.942 60.000 0.00 0.00 0.00 5.25
368 369 2.488355 CAAGCCAAGGATGCAGCG 59.512 61.111 0.00 0.00 0.00 5.18
369 370 3.446570 AAGCCAAGGATGCAGCGC 61.447 61.111 0.00 0.00 0.00 5.92
373 374 3.869272 CAAGGATGCAGCGCCGTC 61.869 66.667 2.29 0.00 0.00 4.79
398 399 3.095163 CCCAGCTGCCCTGAGGAT 61.095 66.667 8.66 0.00 44.64 3.24
399 400 2.509916 CCAGCTGCCCTGAGGATC 59.490 66.667 8.66 0.00 44.64 3.36
401 402 1.153208 CAGCTGCCCTGAGGATCAC 60.153 63.158 0.00 0.00 42.56 3.06
402 403 2.191641 GCTGCCCTGAGGATCACC 59.808 66.667 0.00 0.00 42.56 4.02
403 404 2.503061 CTGCCCTGAGGATCACCG 59.497 66.667 0.00 0.00 42.56 4.94
404 405 3.746949 CTGCCCTGAGGATCACCGC 62.747 68.421 0.00 0.00 42.56 5.68
405 406 4.554036 GCCCTGAGGATCACCGCC 62.554 72.222 0.00 0.00 42.56 6.13
406 407 3.083349 CCCTGAGGATCACCGCCA 61.083 66.667 0.00 0.00 42.56 5.69
407 408 2.187946 CCTGAGGATCACCGCCAC 59.812 66.667 0.00 0.00 42.56 5.01
408 409 2.187946 CTGAGGATCACCGCCACC 59.812 66.667 0.00 0.00 42.56 4.61
409 410 3.391665 CTGAGGATCACCGCCACCC 62.392 68.421 0.00 0.00 42.56 4.61
410 411 3.399181 GAGGATCACCGCCACCCA 61.399 66.667 0.00 0.00 41.83 4.51
411 412 3.682292 GAGGATCACCGCCACCCAC 62.682 68.421 0.00 0.00 41.83 4.61
413 414 4.388499 GATCACCGCCACCCACGT 62.388 66.667 0.00 0.00 0.00 4.49
414 415 3.894547 GATCACCGCCACCCACGTT 62.895 63.158 0.00 0.00 0.00 3.99
415 416 3.894547 ATCACCGCCACCCACGTTC 62.895 63.158 0.00 0.00 0.00 3.95
416 417 4.920112 CACCGCCACCCACGTTCA 62.920 66.667 0.00 0.00 0.00 3.18
417 418 4.178169 ACCGCCACCCACGTTCAA 62.178 61.111 0.00 0.00 0.00 2.69
418 419 2.902846 CCGCCACCCACGTTCAAA 60.903 61.111 0.00 0.00 0.00 2.69
419 420 2.482333 CCGCCACCCACGTTCAAAA 61.482 57.895 0.00 0.00 0.00 2.44
420 421 1.298788 CGCCACCCACGTTCAAAAC 60.299 57.895 0.00 0.00 0.00 2.43
421 422 1.066752 GCCACCCACGTTCAAAACC 59.933 57.895 0.00 0.00 0.00 3.27
422 423 1.737201 CCACCCACGTTCAAAACCC 59.263 57.895 0.00 0.00 0.00 4.11
423 424 0.753848 CCACCCACGTTCAAAACCCT 60.754 55.000 0.00 0.00 0.00 4.34
424 425 1.477195 CCACCCACGTTCAAAACCCTA 60.477 52.381 0.00 0.00 0.00 3.53
425 426 2.299521 CACCCACGTTCAAAACCCTAA 58.700 47.619 0.00 0.00 0.00 2.69
426 427 2.033675 CACCCACGTTCAAAACCCTAAC 59.966 50.000 0.00 0.00 0.00 2.34
427 428 1.610038 CCCACGTTCAAAACCCTAACC 59.390 52.381 0.00 0.00 0.00 2.85
428 429 1.610038 CCACGTTCAAAACCCTAACCC 59.390 52.381 0.00 0.00 0.00 4.11
429 430 2.578786 CACGTTCAAAACCCTAACCCT 58.421 47.619 0.00 0.00 0.00 4.34
430 431 3.496515 CCACGTTCAAAACCCTAACCCTA 60.497 47.826 0.00 0.00 0.00 3.53
431 432 3.749609 CACGTTCAAAACCCTAACCCTAG 59.250 47.826 0.00 0.00 0.00 3.02
432 433 3.244665 ACGTTCAAAACCCTAACCCTAGG 60.245 47.826 0.06 0.06 44.10 3.02
433 434 3.087031 GTTCAAAACCCTAACCCTAGGC 58.913 50.000 2.05 0.00 43.25 3.93
434 435 1.279846 TCAAAACCCTAACCCTAGGCG 59.720 52.381 2.05 0.00 43.25 5.52
435 436 0.034767 AAAACCCTAACCCTAGGCGC 60.035 55.000 2.05 0.00 43.25 6.53
436 437 1.918467 AAACCCTAACCCTAGGCGCC 61.918 60.000 21.89 21.89 43.25 6.53
437 438 3.925090 CCCTAACCCTAGGCGCCG 61.925 72.222 23.20 9.47 43.25 6.46
438 439 4.603946 CCTAACCCTAGGCGCCGC 62.604 72.222 23.20 0.00 38.50 6.53
452 453 4.951963 CCGCCTTCCGATCGCCTC 62.952 72.222 10.32 0.00 40.02 4.70
453 454 3.905678 CGCCTTCCGATCGCCTCT 61.906 66.667 10.32 0.00 40.02 3.69
454 455 2.028337 GCCTTCCGATCGCCTCTC 59.972 66.667 10.32 0.00 0.00 3.20
455 456 2.333225 CCTTCCGATCGCCTCTCG 59.667 66.667 10.32 0.00 40.15 4.04
461 462 4.632458 GATCGCCTCTCGGTCGCC 62.632 72.222 0.00 0.00 38.68 5.54
466 467 4.148825 CCTCTCGGTCGCCCCTTG 62.149 72.222 0.00 0.00 0.00 3.61
467 468 3.068691 CTCTCGGTCGCCCCTTGA 61.069 66.667 0.00 0.00 0.00 3.02
468 469 3.068691 TCTCGGTCGCCCCTTGAG 61.069 66.667 0.00 0.00 0.00 3.02
469 470 4.148825 CTCGGTCGCCCCTTGAGG 62.149 72.222 0.00 0.00 0.00 3.86
479 480 3.793060 CCTTGAGGGAGACGTGGT 58.207 61.111 0.00 0.00 37.23 4.16
480 481 1.293498 CCTTGAGGGAGACGTGGTG 59.707 63.158 0.00 0.00 37.23 4.17
481 482 1.293498 CTTGAGGGAGACGTGGTGG 59.707 63.158 0.00 0.00 0.00 4.61
482 483 1.152419 TTGAGGGAGACGTGGTGGA 60.152 57.895 0.00 0.00 0.00 4.02
483 484 1.469335 TTGAGGGAGACGTGGTGGAC 61.469 60.000 0.00 0.00 0.00 4.02
484 485 2.603776 AGGGAGACGTGGTGGACC 60.604 66.667 0.00 0.00 0.00 4.46
485 486 3.703127 GGGAGACGTGGTGGACCC 61.703 72.222 0.00 0.00 34.29 4.46
486 487 4.065281 GGAGACGTGGTGGACCCG 62.065 72.222 0.00 5.48 36.31 5.28
487 488 4.736896 GAGACGTGGTGGACCCGC 62.737 72.222 0.00 0.00 40.58 6.13
492 493 3.936203 GTGGTGGACCCGCTGTCA 61.936 66.667 5.72 0.00 46.38 3.58
493 494 3.164977 TGGTGGACCCGCTGTCAA 61.165 61.111 5.72 0.00 46.38 3.18
494 495 2.358737 GGTGGACCCGCTGTCAAG 60.359 66.667 5.72 0.00 46.38 3.02
495 496 2.426023 GTGGACCCGCTGTCAAGT 59.574 61.111 5.72 0.00 46.38 3.16
496 497 1.227853 GTGGACCCGCTGTCAAGTT 60.228 57.895 5.72 0.00 46.38 2.66
497 498 1.227823 TGGACCCGCTGTCAAGTTG 60.228 57.895 0.00 0.00 46.38 3.16
498 499 1.070786 GGACCCGCTGTCAAGTTGA 59.929 57.895 0.08 0.08 46.38 3.18
499 500 0.534203 GGACCCGCTGTCAAGTTGAA 60.534 55.000 7.25 0.00 46.38 2.69
500 501 1.523758 GACCCGCTGTCAAGTTGAAT 58.476 50.000 7.25 0.00 43.85 2.57
501 502 1.197721 GACCCGCTGTCAAGTTGAATG 59.802 52.381 7.25 4.64 43.85 2.67
521 522 2.575735 TGAACACATATGGCCTCTTGGA 59.424 45.455 3.32 0.00 34.57 3.53
524 525 2.578021 ACACATATGGCCTCTTGGAACT 59.422 45.455 3.32 0.00 34.57 3.01
538 539 1.894466 TGGAACTGAACCGATCCGTTA 59.106 47.619 0.00 0.00 35.85 3.18
540 541 1.916000 GAACTGAACCGATCCGTTACG 59.084 52.381 0.00 0.00 35.85 3.18
556 557 4.738740 CCGTTACGGTCAATCTTATGAGAC 59.261 45.833 16.53 0.00 42.73 3.36
570 571 5.883115 TCTTATGAGACAAACCAAACACACA 59.117 36.000 0.00 0.00 0.00 3.72
603 604 0.893270 TGGATCTGCCCAACCAAACG 60.893 55.000 0.00 0.00 34.97 3.60
624 625 4.452455 ACGAGAAGTGCAGGATAAAACAAG 59.548 41.667 0.00 0.00 0.00 3.16
626 627 3.507622 AGAAGTGCAGGATAAAACAAGCC 59.492 43.478 0.00 0.00 0.00 4.35
662 663 7.771826 CCATATTAACGGTATATTTTCCCCGAT 59.228 37.037 3.69 0.00 43.01 4.18
866 875 0.824759 ATCCTAGCAACGACTCCCAC 59.175 55.000 0.00 0.00 0.00 4.61
929 938 1.228154 GCCTCCCCGAACACAAACT 60.228 57.895 0.00 0.00 0.00 2.66
940 949 2.586648 ACACAAACTCCCAATCTCCC 57.413 50.000 0.00 0.00 0.00 4.30
971 980 2.574399 GCGATATCCCTCTCCCGC 59.426 66.667 0.00 0.00 35.91 6.13
1171 1190 4.142600 GGTTCGATCTGAGATTTGGTTTGG 60.143 45.833 0.00 0.00 0.00 3.28
1308 1328 0.037590 TGTTGTACACATCTGCCCCC 59.962 55.000 0.00 0.00 0.00 5.40
1386 2468 1.588674 TTGGATCTGTTGCGTTCGTT 58.411 45.000 0.00 0.00 0.00 3.85
1412 2494 0.250166 AGGGTTTGGGAACGAGAACG 60.250 55.000 0.00 0.00 45.75 3.95
1424 2506 5.030295 GGAACGAGAACGACGATGTATTTA 58.970 41.667 0.00 0.00 42.66 1.40
1426 2508 4.033684 ACGAGAACGACGATGTATTTAGC 58.966 43.478 0.00 0.00 42.66 3.09
1427 2509 3.421231 CGAGAACGACGATGTATTTAGCC 59.579 47.826 0.00 0.00 42.66 3.93
1534 2641 7.738437 ATTTATGAAGTCCCATGTTTCCATT 57.262 32.000 0.00 0.00 0.00 3.16
1543 2650 3.385755 CCCATGTTTCCATTGGAATCCTC 59.614 47.826 18.62 10.23 41.71 3.71
1577 2684 8.552296 ACTCCACCTGAATTTATACTGATTCTT 58.448 33.333 0.00 0.00 34.24 2.52
1579 2686 7.283127 TCCACCTGAATTTATACTGATTCTTGC 59.717 37.037 0.00 0.00 34.24 4.01
1647 2754 3.448301 GGCATCAAACTCCAATGGATCAA 59.552 43.478 0.87 0.00 0.00 2.57
1673 2780 2.076863 GTGTATGTGCTGTGTTCTCCC 58.923 52.381 0.00 0.00 0.00 4.30
1686 2793 0.679505 TTCTCCCTGTCTTGTGACCG 59.320 55.000 0.00 0.00 42.28 4.79
1718 2825 2.038659 CCCACTGGTTCCAAATGTTGT 58.961 47.619 0.00 0.00 0.00 3.32
1730 2837 3.818210 CCAAATGTTGTGGTAGTGCTACA 59.182 43.478 10.98 0.00 37.78 2.74
1733 2840 4.551702 ATGTTGTGGTAGTGCTACATGA 57.448 40.909 0.00 0.00 38.38 3.07
1740 2847 4.512944 GTGGTAGTGCTACATGATTGGATG 59.487 45.833 0.00 0.00 37.78 3.51
1759 2866 2.607499 TGGATTTTGGGCTTGTGATGT 58.393 42.857 0.00 0.00 0.00 3.06
1865 2972 8.062065 AGATTAGTAAGTTCACTTCTCTCAGG 57.938 38.462 0.00 0.00 37.40 3.86
2017 3124 6.590234 TGGACGAGCTGACATGTATTATAT 57.410 37.500 0.00 0.00 0.00 0.86
2018 3125 6.993079 TGGACGAGCTGACATGTATTATATT 58.007 36.000 0.00 0.00 0.00 1.28
2019 3126 6.868339 TGGACGAGCTGACATGTATTATATTG 59.132 38.462 0.00 0.00 0.00 1.90
2020 3127 7.090808 GGACGAGCTGACATGTATTATATTGA 58.909 38.462 0.00 0.00 0.00 2.57
2021 3128 7.598869 GGACGAGCTGACATGTATTATATTGAA 59.401 37.037 0.00 0.00 0.00 2.69
2022 3129 8.299262 ACGAGCTGACATGTATTATATTGAAC 57.701 34.615 0.00 0.00 0.00 3.18
2023 3130 8.144478 ACGAGCTGACATGTATTATATTGAACT 58.856 33.333 0.00 0.00 0.00 3.01
2024 3131 8.642885 CGAGCTGACATGTATTATATTGAACTC 58.357 37.037 0.00 0.00 0.00 3.01
2058 3166 6.291377 TGTTTCAGTCATATCAGGATTAGCC 58.709 40.000 0.00 0.00 0.00 3.93
2066 3174 8.439971 AGTCATATCAGGATTAGCCATTTGTAA 58.560 33.333 0.00 0.00 40.02 2.41
2069 3177 9.458727 CATATCAGGATTAGCCATTTGTAATCT 57.541 33.333 0.00 0.00 40.02 2.40
2076 3184 9.289782 GGATTAGCCATTTGTAATCTCACTAAT 57.710 33.333 0.00 0.00 36.36 1.73
2080 3188 5.973565 GCCATTTGTAATCTCACTAATGCAC 59.026 40.000 0.00 0.00 39.08 4.57
2081 3189 6.498304 CCATTTGTAATCTCACTAATGCACC 58.502 40.000 0.00 0.00 39.08 5.01
2083 3191 6.985188 TTTGTAATCTCACTAATGCACCTC 57.015 37.500 0.00 0.00 0.00 3.85
2087 3195 5.886960 AATCTCACTAATGCACCTCAAAC 57.113 39.130 0.00 0.00 0.00 2.93
2091 3199 5.008613 TCTCACTAATGCACCTCAAACAAAC 59.991 40.000 0.00 0.00 0.00 2.93
2211 3319 7.044798 AGTGTCTCTTGATTTAAGCCTGATAC 58.955 38.462 0.00 0.00 36.31 2.24
2229 3337 7.569591 GCCTGATACGCTAATGTCTACAATTTC 60.570 40.741 0.00 0.00 0.00 2.17
2233 3341 9.586150 GATACGCTAATGTCTACAATTTCATTG 57.414 33.333 0.00 0.00 45.59 2.82
2329 3437 3.893813 AGAAATATGCCATCTGGAAAGCC 59.106 43.478 0.00 0.00 37.39 4.35
2437 3545 6.677920 GCACCACTACAATTGATCATGTAACC 60.678 42.308 13.59 0.00 32.05 2.85
2452 3560 1.829849 GTAACCTCCTTAACTCCGGCT 59.170 52.381 0.00 0.00 0.00 5.52
2481 3599 7.595502 CCTTTAGATACTAGTATTTGTCGGCAG 59.404 40.741 16.46 5.66 0.00 4.85
2544 3662 5.615581 CGCGGAATCAATAATTTGTTAGTCG 59.384 40.000 0.00 0.00 34.32 4.18
2589 3707 2.254546 TTGCACCAGAGGTACAACAG 57.745 50.000 0.00 0.00 34.43 3.16
3098 4225 2.166254 CCCTCTTTGTGTGCAAAACAGT 59.834 45.455 3.90 0.00 43.17 3.55
3139 4266 3.570212 GGCACAGTGGTCACCCCT 61.570 66.667 1.84 0.00 0.00 4.79
3170 4297 2.163010 AGAATTGGCGACTGAGCAATTG 59.837 45.455 0.00 0.00 39.27 2.32
3182 4309 5.737860 ACTGAGCAATTGTGATCTGTGATA 58.262 37.500 7.40 0.00 46.59 2.15
3194 4321 8.684386 TGTGATCTGTGATAAACCACTTAAAA 57.316 30.769 0.00 0.00 37.89 1.52
3197 4324 8.783093 TGATCTGTGATAAACCACTTAAAACAG 58.217 33.333 0.00 0.00 37.84 3.16
3292 4425 0.179111 TAGCCTGTATGACACTGCGC 60.179 55.000 0.00 0.00 32.80 6.09
3371 4504 7.280205 TGTTCAGTTTTGAGAACTCTTAGAACC 59.720 37.037 11.56 0.44 43.38 3.62
3465 4606 6.990341 TCTGGAAGATACACACATGAAATG 57.010 37.500 0.00 0.00 45.60 2.32
3531 4672 3.365265 CGTGCCCCAAGCCTTGTC 61.365 66.667 3.37 0.00 42.71 3.18
3554 4695 3.206150 TGACCAGTCTCTGTTTTCTTGC 58.794 45.455 0.00 0.00 0.00 4.01
3632 4774 4.020543 TGCTACCTGTGTTTTCCACTTTT 58.979 39.130 0.00 0.00 44.81 2.27
3672 4814 9.624697 GTTTTCATCATTGCTAAGATTGTTACA 57.375 29.630 0.00 0.00 0.00 2.41
3749 4899 7.707104 ACTTGGTTTCTTCATCTTGTTACTTG 58.293 34.615 0.00 0.00 0.00 3.16
3753 4903 7.139392 GGTTTCTTCATCTTGTTACTTGAACC 58.861 38.462 0.00 0.00 37.22 3.62
3843 4993 8.746922 TTATCTTTCAAACAAGATGTGATTGC 57.253 30.769 6.25 0.00 42.43 3.56
3844 4994 6.395426 TCTTTCAAACAAGATGTGATTGCT 57.605 33.333 0.00 0.00 39.28 3.91
3845 4995 6.441274 TCTTTCAAACAAGATGTGATTGCTC 58.559 36.000 0.00 0.00 39.28 4.26
3846 4996 5.771153 TTCAAACAAGATGTGATTGCTCA 57.229 34.783 0.00 0.00 39.28 4.26
3847 4997 5.970317 TCAAACAAGATGTGATTGCTCAT 57.030 34.783 0.00 0.00 39.28 2.90
3848 4998 5.946298 TCAAACAAGATGTGATTGCTCATC 58.054 37.500 0.00 0.00 42.49 2.92
3849 4999 5.474189 TCAAACAAGATGTGATTGCTCATCA 59.526 36.000 0.00 0.00 43.83 3.07
3850 5000 5.970317 AACAAGATGTGATTGCTCATCAA 57.030 34.783 0.00 0.00 43.93 2.57
3851 5001 5.970317 ACAAGATGTGATTGCTCATCAAA 57.030 34.783 0.00 0.00 43.93 2.69
3852 5002 6.525578 ACAAGATGTGATTGCTCATCAAAT 57.474 33.333 0.00 2.64 43.93 2.32
3913 5081 5.696270 TGTACTTTGCATTCTCACACTGTAG 59.304 40.000 0.00 0.00 0.00 2.74
3920 5088 4.561530 GCATTCTCACACTGTAGAAGGTGA 60.562 45.833 5.64 0.00 36.24 4.02
3966 5135 2.118228 TGCTGCATCGTTTTGTTGAC 57.882 45.000 0.00 0.00 0.00 3.18
3986 5155 4.256920 GACTTAAGGTGCATGTCTCACAT 58.743 43.478 7.53 0.00 39.91 3.21
4011 5180 5.592104 TGGAAGAATAATAGCAGACGTGA 57.408 39.130 0.00 0.00 0.00 4.35
4047 5216 7.278646 GCTGTGTAGATTTCACATTCACTGATA 59.721 37.037 0.00 0.00 43.39 2.15
4051 5220 8.655970 TGTAGATTTCACATTCACTGATAAACG 58.344 33.333 0.00 0.00 0.00 3.60
4058 5227 5.867174 CACATTCACTGATAAACGGTCACTA 59.133 40.000 0.00 0.00 35.72 2.74
4059 5228 5.867716 ACATTCACTGATAAACGGTCACTAC 59.132 40.000 0.00 0.00 35.72 2.73
4199 5368 8.244113 ACTTTTTCGTCTTTGTTGAAGAATCTT 58.756 29.630 0.00 0.00 45.59 2.40
4200 5369 8.614994 TTTTTCGTCTTTGTTGAAGAATCTTC 57.385 30.769 15.62 15.62 45.59 2.87
4333 5502 1.686587 TCTCGACAAGGTGCAGAGAAA 59.313 47.619 0.00 0.00 32.79 2.52
4609 5992 0.755686 GAGCAGACCATCCTTCGGAT 59.244 55.000 0.00 0.00 44.21 4.18
4645 6028 2.369860 TCAGAGCAATGATAAGCCGGAT 59.630 45.455 5.05 0.00 0.00 4.18
4666 6049 3.849911 TGTTTCAGCTTATCCTCAGACG 58.150 45.455 0.00 0.00 0.00 4.18
4820 6203 2.174639 TCTGTCACAACCCATCAACCTT 59.825 45.455 0.00 0.00 0.00 3.50
4945 6328 0.840722 CACACCAGGTTACCCCTCCT 60.841 60.000 0.00 0.00 43.86 3.69
5008 6391 1.153549 GCCGGCAGTCGAGAAGATT 60.154 57.895 24.80 0.00 42.43 2.40
5145 6528 1.140589 CTCACTAGCTGCCTGGTCG 59.859 63.158 0.00 0.00 29.35 4.79
5241 6624 3.321968 TGCATAGATACAAGATCGCTGGT 59.678 43.478 3.34 0.00 31.73 4.00
5289 6675 4.813296 AGGTCTTTAGCAAACTGTTTCG 57.187 40.909 2.13 1.06 0.00 3.46
5611 7355 7.393234 TCAAATTGACTTTTCTACCCCTATGTG 59.607 37.037 0.00 0.00 0.00 3.21
5652 7410 8.281531 TGATATTTAATCCCTCAAATGGAGTGT 58.718 33.333 0.00 0.00 42.40 3.55
5653 7411 6.780457 ATTTAATCCCTCAAATGGAGTGTG 57.220 37.500 0.00 0.00 42.40 3.82
5765 7524 4.386088 GGCCTCCATATCCATATGAAGCAT 60.386 45.833 3.65 0.00 42.05 3.79
5853 7612 3.857157 AAACAACTTCTCTGCCAGGTA 57.143 42.857 0.00 0.00 0.00 3.08
5861 7620 0.031857 CTCTGCCAGGTAGCTCATCG 59.968 60.000 0.00 0.00 0.00 3.84
5929 7688 4.941873 GGTACCAAGTAAATCAAGGGTCTG 59.058 45.833 7.15 0.00 0.00 3.51
5963 7722 4.640771 ACTCCACAGGAAATAGCTCAAA 57.359 40.909 0.00 0.00 0.00 2.69
5966 7725 5.649831 ACTCCACAGGAAATAGCTCAAATTC 59.350 40.000 0.00 0.00 0.00 2.17
6087 7846 5.614308 TCCTTCACATATACATCCAGCAAG 58.386 41.667 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.599991 ACTCGTCAAGCATGCGTTCA 60.600 50.000 13.01 0.00 0.00 3.18
8 9 1.321743 CTACTCGTCAAGCATGCGTTC 59.678 52.381 13.01 3.85 0.00 3.95
26 27 1.580059 AATCTTTCTCCCCACGCCTA 58.420 50.000 0.00 0.00 0.00 3.93
27 28 0.698818 AAATCTTTCTCCCCACGCCT 59.301 50.000 0.00 0.00 0.00 5.52
41 42 0.953960 GGGTTGTCGTCGGCAAATCT 60.954 55.000 14.83 0.00 0.00 2.40
47 48 2.280592 AAGTGGGTTGTCGTCGGC 60.281 61.111 0.00 0.00 0.00 5.54
48 49 0.320421 ATGAAGTGGGTTGTCGTCGG 60.320 55.000 0.00 0.00 0.00 4.79
49 50 0.790207 CATGAAGTGGGTTGTCGTCG 59.210 55.000 0.00 0.00 0.00 5.12
50 51 1.798813 GACATGAAGTGGGTTGTCGTC 59.201 52.381 0.00 0.00 30.29 4.20
51 52 1.878953 GACATGAAGTGGGTTGTCGT 58.121 50.000 0.00 0.00 30.29 4.34
53 54 2.163818 TCGACATGAAGTGGGTTGTC 57.836 50.000 0.00 0.00 36.09 3.18
54 55 2.303022 AGATCGACATGAAGTGGGTTGT 59.697 45.455 0.00 0.00 0.00 3.32
55 56 2.977914 AGATCGACATGAAGTGGGTTG 58.022 47.619 0.00 0.00 0.00 3.77
56 57 3.600388 GAAGATCGACATGAAGTGGGTT 58.400 45.455 0.00 0.00 0.00 4.11
57 58 2.417379 CGAAGATCGACATGAAGTGGGT 60.417 50.000 0.00 0.00 43.74 4.51
58 59 2.196749 CGAAGATCGACATGAAGTGGG 58.803 52.381 0.00 0.00 43.74 4.61
59 60 2.854777 GACGAAGATCGACATGAAGTGG 59.145 50.000 6.78 0.00 43.74 4.00
60 61 2.854777 GGACGAAGATCGACATGAAGTG 59.145 50.000 6.78 0.00 43.74 3.16
61 62 2.755655 AGGACGAAGATCGACATGAAGT 59.244 45.455 6.78 0.00 43.74 3.01
62 63 3.428746 AGGACGAAGATCGACATGAAG 57.571 47.619 6.78 0.00 43.74 3.02
63 64 3.511699 CAAGGACGAAGATCGACATGAA 58.488 45.455 6.78 0.00 43.74 2.57
64 65 2.159240 CCAAGGACGAAGATCGACATGA 60.159 50.000 6.78 0.00 43.74 3.07
65 66 2.159240 TCCAAGGACGAAGATCGACATG 60.159 50.000 6.78 0.00 43.74 3.21
66 67 2.100197 TCCAAGGACGAAGATCGACAT 58.900 47.619 6.78 0.00 43.74 3.06
67 68 1.541379 TCCAAGGACGAAGATCGACA 58.459 50.000 6.78 0.00 43.74 4.35
68 69 2.359531 AGATCCAAGGACGAAGATCGAC 59.640 50.000 6.78 0.00 43.74 4.20
69 70 2.359214 CAGATCCAAGGACGAAGATCGA 59.641 50.000 6.78 0.00 43.74 3.59
70 71 2.544694 CCAGATCCAAGGACGAAGATCG 60.545 54.545 0.00 0.00 46.93 3.69
71 72 2.695666 TCCAGATCCAAGGACGAAGATC 59.304 50.000 0.00 0.00 36.25 2.75
72 73 2.752030 TCCAGATCCAAGGACGAAGAT 58.248 47.619 0.00 0.00 0.00 2.40
73 74 2.231716 TCCAGATCCAAGGACGAAGA 57.768 50.000 0.00 0.00 0.00 2.87
74 75 2.432146 TGATCCAGATCCAAGGACGAAG 59.568 50.000 5.22 0.00 36.60 3.79
75 76 2.466846 TGATCCAGATCCAAGGACGAA 58.533 47.619 5.22 0.00 36.60 3.85
76 77 2.159179 TGATCCAGATCCAAGGACGA 57.841 50.000 5.22 0.00 36.60 4.20
77 78 2.366590 TGATGATCCAGATCCAAGGACG 59.633 50.000 5.22 0.00 36.60 4.79
78 79 4.428294 TTGATGATCCAGATCCAAGGAC 57.572 45.455 5.22 0.00 36.60 3.85
79 80 4.227982 TGTTTGATGATCCAGATCCAAGGA 59.772 41.667 5.22 2.05 37.02 3.36
80 81 4.337555 GTGTTTGATGATCCAGATCCAAGG 59.662 45.833 5.22 0.00 37.02 3.61
81 82 4.945543 TGTGTTTGATGATCCAGATCCAAG 59.054 41.667 5.22 0.00 37.02 3.61
82 83 4.920999 TGTGTTTGATGATCCAGATCCAA 58.079 39.130 5.22 1.02 37.02 3.53
83 84 4.573021 TGTGTTTGATGATCCAGATCCA 57.427 40.909 5.22 0.00 37.02 3.41
84 85 5.393461 GGTTTGTGTTTGATGATCCAGATCC 60.393 44.000 5.22 0.00 37.02 3.36
85 86 5.183713 TGGTTTGTGTTTGATGATCCAGATC 59.816 40.000 0.47 0.47 38.29 2.75
86 87 5.078949 TGGTTTGTGTTTGATGATCCAGAT 58.921 37.500 0.00 0.00 0.00 2.90
87 88 4.468713 TGGTTTGTGTTTGATGATCCAGA 58.531 39.130 0.00 0.00 0.00 3.86
88 89 4.852134 TGGTTTGTGTTTGATGATCCAG 57.148 40.909 0.00 0.00 0.00 3.86
89 90 4.498850 CGTTGGTTTGTGTTTGATGATCCA 60.499 41.667 0.00 0.00 0.00 3.41
90 91 3.980775 CGTTGGTTTGTGTTTGATGATCC 59.019 43.478 0.00 0.00 0.00 3.36
91 92 3.980775 CCGTTGGTTTGTGTTTGATGATC 59.019 43.478 0.00 0.00 0.00 2.92
92 93 3.798548 GCCGTTGGTTTGTGTTTGATGAT 60.799 43.478 0.00 0.00 0.00 2.45
93 94 2.480416 GCCGTTGGTTTGTGTTTGATGA 60.480 45.455 0.00 0.00 0.00 2.92
94 95 1.857837 GCCGTTGGTTTGTGTTTGATG 59.142 47.619 0.00 0.00 0.00 3.07
95 96 1.754226 AGCCGTTGGTTTGTGTTTGAT 59.246 42.857 0.00 0.00 0.00 2.57
96 97 1.178276 AGCCGTTGGTTTGTGTTTGA 58.822 45.000 0.00 0.00 0.00 2.69
97 98 1.923864 GAAGCCGTTGGTTTGTGTTTG 59.076 47.619 0.00 0.00 30.94 2.93
98 99 1.134936 GGAAGCCGTTGGTTTGTGTTT 60.135 47.619 0.00 0.00 30.94 2.83
99 100 0.458260 GGAAGCCGTTGGTTTGTGTT 59.542 50.000 0.00 0.00 30.94 3.32
100 101 0.395173 AGGAAGCCGTTGGTTTGTGT 60.395 50.000 0.00 0.00 30.94 3.72
101 102 0.744281 AAGGAAGCCGTTGGTTTGTG 59.256 50.000 0.00 0.00 30.94 3.33
102 103 1.029681 GAAGGAAGCCGTTGGTTTGT 58.970 50.000 0.00 0.00 30.94 2.83
103 104 1.266989 GAGAAGGAAGCCGTTGGTTTG 59.733 52.381 0.00 0.00 30.94 2.93
104 105 1.605753 GAGAAGGAAGCCGTTGGTTT 58.394 50.000 0.00 0.00 30.94 3.27
105 106 0.250770 GGAGAAGGAAGCCGTTGGTT 60.251 55.000 0.00 0.00 34.19 3.67
106 107 1.375326 GGAGAAGGAAGCCGTTGGT 59.625 57.895 0.00 0.00 0.00 3.67
107 108 1.741770 CGGAGAAGGAAGCCGTTGG 60.742 63.158 0.00 0.00 40.17 3.77
108 109 3.876300 CGGAGAAGGAAGCCGTTG 58.124 61.111 0.00 0.00 40.17 4.10
112 113 1.014564 CGTTGACGGAGAAGGAAGCC 61.015 60.000 0.00 0.00 35.37 4.35
113 114 1.627550 GCGTTGACGGAGAAGGAAGC 61.628 60.000 5.62 0.00 40.23 3.86
114 115 1.014564 GGCGTTGACGGAGAAGGAAG 61.015 60.000 5.62 0.00 40.23 3.46
115 116 1.005394 GGCGTTGACGGAGAAGGAA 60.005 57.895 5.62 0.00 40.23 3.36
116 117 2.154798 CTGGCGTTGACGGAGAAGGA 62.155 60.000 5.62 0.00 40.23 3.36
117 118 1.738099 CTGGCGTTGACGGAGAAGG 60.738 63.158 5.62 0.00 40.23 3.46
118 119 2.383527 GCTGGCGTTGACGGAGAAG 61.384 63.158 5.62 0.00 40.23 2.85
119 120 2.357034 GCTGGCGTTGACGGAGAA 60.357 61.111 5.62 0.00 40.23 2.87
120 121 4.373116 GGCTGGCGTTGACGGAGA 62.373 66.667 5.62 0.00 40.23 3.71
139 140 3.740128 CTGTCGGCGAAGATGGGGG 62.740 68.421 12.92 0.00 0.00 5.40
140 141 2.202932 CTGTCGGCGAAGATGGGG 60.203 66.667 12.92 0.00 0.00 4.96
141 142 2.202932 CCTGTCGGCGAAGATGGG 60.203 66.667 12.92 5.82 0.00 4.00
142 143 2.202932 CCCTGTCGGCGAAGATGG 60.203 66.667 12.92 11.29 0.00 3.51
143 144 1.519455 GTCCCTGTCGGCGAAGATG 60.519 63.158 12.92 0.70 0.00 2.90
144 145 2.893398 GTCCCTGTCGGCGAAGAT 59.107 61.111 12.92 0.00 0.00 2.40
145 146 3.744719 CGTCCCTGTCGGCGAAGA 61.745 66.667 12.92 3.35 34.32 2.87
151 152 4.379243 AAGCAGCGTCCCTGTCGG 62.379 66.667 0.00 0.00 43.71 4.79
152 153 2.811317 GAAGCAGCGTCCCTGTCG 60.811 66.667 0.00 0.00 43.71 4.35
153 154 2.435059 GGAAGCAGCGTCCCTGTC 60.435 66.667 16.15 0.00 43.71 3.51
154 155 2.925170 AGGAAGCAGCGTCCCTGT 60.925 61.111 22.47 2.75 43.71 4.00
155 156 2.125350 GAGGAAGCAGCGTCCCTG 60.125 66.667 22.47 0.00 44.67 4.45
156 157 3.394836 GGAGGAAGCAGCGTCCCT 61.395 66.667 22.47 12.77 36.96 4.20
157 158 4.821589 CGGAGGAAGCAGCGTCCC 62.822 72.222 22.47 14.08 39.14 4.46
158 159 3.708220 CTCGGAGGAAGCAGCGTCC 62.708 68.421 19.04 19.04 38.99 4.79
159 160 2.202676 CTCGGAGGAAGCAGCGTC 60.203 66.667 0.00 0.00 0.00 5.19
160 161 3.764466 CCTCGGAGGAAGCAGCGT 61.764 66.667 19.57 0.00 37.67 5.07
161 162 3.708220 GACCTCGGAGGAAGCAGCG 62.708 68.421 30.13 1.53 37.67 5.18
162 163 1.893919 AAGACCTCGGAGGAAGCAGC 61.894 60.000 30.13 11.32 37.67 5.25
163 164 0.108424 CAAGACCTCGGAGGAAGCAG 60.108 60.000 30.13 11.63 37.67 4.24
164 165 1.975327 CAAGACCTCGGAGGAAGCA 59.025 57.895 30.13 0.00 37.67 3.91
165 166 1.448717 GCAAGACCTCGGAGGAAGC 60.449 63.158 30.13 21.14 37.67 3.86
166 167 1.219393 GGCAAGACCTCGGAGGAAG 59.781 63.158 30.13 16.13 37.67 3.46
167 168 0.909610 ATGGCAAGACCTCGGAGGAA 60.910 55.000 30.13 6.95 37.67 3.36
168 169 1.306141 ATGGCAAGACCTCGGAGGA 60.306 57.895 30.13 6.42 37.67 3.71
169 170 1.144936 GATGGCAAGACCTCGGAGG 59.855 63.158 22.40 22.40 42.49 4.30
170 171 0.179089 CAGATGGCAAGACCTCGGAG 60.179 60.000 0.00 0.00 40.22 4.63
171 172 0.904865 ACAGATGGCAAGACCTCGGA 60.905 55.000 0.00 0.00 40.22 4.55
172 173 0.460987 GACAGATGGCAAGACCTCGG 60.461 60.000 0.00 0.00 40.22 4.63
173 174 0.803768 CGACAGATGGCAAGACCTCG 60.804 60.000 0.00 0.00 40.22 4.63
174 175 0.460987 CCGACAGATGGCAAGACCTC 60.461 60.000 0.00 0.00 40.22 3.85
175 176 1.599047 CCGACAGATGGCAAGACCT 59.401 57.895 0.00 0.00 40.22 3.85
176 177 1.450312 CCCGACAGATGGCAAGACC 60.450 63.158 0.00 0.00 39.84 3.85
177 178 1.450312 CCCCGACAGATGGCAAGAC 60.450 63.158 0.00 0.00 0.00 3.01
178 179 1.612146 TCCCCGACAGATGGCAAGA 60.612 57.895 0.00 0.00 0.00 3.02
179 180 1.450312 GTCCCCGACAGATGGCAAG 60.450 63.158 0.00 0.00 32.09 4.01
180 181 1.899437 GAGTCCCCGACAGATGGCAA 61.899 60.000 0.00 0.00 34.60 4.52
181 182 2.284625 AGTCCCCGACAGATGGCA 60.285 61.111 0.00 0.00 34.60 4.92
182 183 2.060980 AGAGTCCCCGACAGATGGC 61.061 63.158 0.00 0.00 34.60 4.40
183 184 0.684479 TCAGAGTCCCCGACAGATGG 60.684 60.000 0.00 0.00 34.60 3.51
184 185 1.135915 CTTCAGAGTCCCCGACAGATG 59.864 57.143 0.00 0.00 34.60 2.90
185 186 1.006043 TCTTCAGAGTCCCCGACAGAT 59.994 52.381 0.00 0.00 34.60 2.90
186 187 0.404426 TCTTCAGAGTCCCCGACAGA 59.596 55.000 0.00 0.00 34.60 3.41
187 188 1.407258 GATCTTCAGAGTCCCCGACAG 59.593 57.143 0.00 0.00 34.60 3.51
188 189 1.475403 GATCTTCAGAGTCCCCGACA 58.525 55.000 0.00 0.00 34.60 4.35
189 190 0.382515 CGATCTTCAGAGTCCCCGAC 59.617 60.000 0.00 0.00 0.00 4.79
190 191 1.384989 GCGATCTTCAGAGTCCCCGA 61.385 60.000 0.00 0.00 0.00 5.14
191 192 1.066587 GCGATCTTCAGAGTCCCCG 59.933 63.158 0.00 0.00 0.00 5.73
192 193 1.045911 AGGCGATCTTCAGAGTCCCC 61.046 60.000 0.00 0.00 0.00 4.81
193 194 0.103937 CAGGCGATCTTCAGAGTCCC 59.896 60.000 0.00 0.00 0.00 4.46
194 195 0.820871 ACAGGCGATCTTCAGAGTCC 59.179 55.000 0.00 0.00 0.00 3.85
195 196 2.535331 GAACAGGCGATCTTCAGAGTC 58.465 52.381 0.00 0.00 0.00 3.36
196 197 1.135257 CGAACAGGCGATCTTCAGAGT 60.135 52.381 0.00 0.00 0.00 3.24
197 198 1.135257 ACGAACAGGCGATCTTCAGAG 60.135 52.381 0.00 0.00 34.83 3.35
198 199 0.888619 ACGAACAGGCGATCTTCAGA 59.111 50.000 0.00 0.00 34.83 3.27
199 200 1.135257 AGACGAACAGGCGATCTTCAG 60.135 52.381 0.00 0.00 34.83 3.02
200 201 0.888619 AGACGAACAGGCGATCTTCA 59.111 50.000 0.00 0.00 34.83 3.02
201 202 1.656095 CAAGACGAACAGGCGATCTTC 59.344 52.381 0.00 0.00 33.04 2.87
202 203 1.000955 ACAAGACGAACAGGCGATCTT 59.999 47.619 0.00 0.00 34.45 2.40
203 204 0.603569 ACAAGACGAACAGGCGATCT 59.396 50.000 0.00 0.00 34.83 2.75
204 205 0.992802 GACAAGACGAACAGGCGATC 59.007 55.000 0.00 0.00 34.83 3.69
205 206 0.389948 GGACAAGACGAACAGGCGAT 60.390 55.000 0.00 0.00 34.83 4.58
206 207 1.006571 GGACAAGACGAACAGGCGA 60.007 57.895 0.00 0.00 34.83 5.54
207 208 1.006102 AGGACAAGACGAACAGGCG 60.006 57.895 0.00 0.00 37.29 5.52
208 209 0.670854 GGAGGACAAGACGAACAGGC 60.671 60.000 0.00 0.00 0.00 4.85
209 210 0.388649 CGGAGGACAAGACGAACAGG 60.389 60.000 0.00 0.00 0.00 4.00
210 211 1.009389 GCGGAGGACAAGACGAACAG 61.009 60.000 0.00 0.00 0.00 3.16
211 212 1.006571 GCGGAGGACAAGACGAACA 60.007 57.895 0.00 0.00 0.00 3.18
212 213 1.737008 GGCGGAGGACAAGACGAAC 60.737 63.158 0.00 0.00 0.00 3.95
213 214 1.874345 GAGGCGGAGGACAAGACGAA 61.874 60.000 0.00 0.00 0.00 3.85
214 215 2.282958 AGGCGGAGGACAAGACGA 60.283 61.111 0.00 0.00 0.00 4.20
215 216 2.182030 GAGGCGGAGGACAAGACG 59.818 66.667 0.00 0.00 0.00 4.18
216 217 2.579738 GGAGGCGGAGGACAAGAC 59.420 66.667 0.00 0.00 0.00 3.01
217 218 2.683933 GGGAGGCGGAGGACAAGA 60.684 66.667 0.00 0.00 0.00 3.02
218 219 3.787001 GGGGAGGCGGAGGACAAG 61.787 72.222 0.00 0.00 0.00 3.16
228 229 4.570874 GATGAAGGCGGGGGAGGC 62.571 72.222 0.00 0.00 0.00 4.70
229 230 4.241555 CGATGAAGGCGGGGGAGG 62.242 72.222 0.00 0.00 0.00 4.30
230 231 4.241555 CCGATGAAGGCGGGGGAG 62.242 72.222 0.00 0.00 44.87 4.30
236 237 0.748005 AACAATCCCCGATGAAGGCG 60.748 55.000 0.00 0.00 0.00 5.52
237 238 1.405463 GAAACAATCCCCGATGAAGGC 59.595 52.381 0.00 0.00 0.00 4.35
238 239 2.024414 GGAAACAATCCCCGATGAAGG 58.976 52.381 0.00 0.00 43.00 3.46
248 249 2.333094 GCGACTCCGAGGAAACAATCC 61.333 57.143 0.00 0.00 41.65 3.01
249 250 1.000145 GCGACTCCGAGGAAACAATC 59.000 55.000 0.00 0.00 38.22 2.67
250 251 0.391263 GGCGACTCCGAGGAAACAAT 60.391 55.000 0.00 0.00 38.22 2.71
251 252 1.005394 GGCGACTCCGAGGAAACAA 60.005 57.895 0.00 0.00 38.22 2.83
252 253 2.654877 GGCGACTCCGAGGAAACA 59.345 61.111 0.00 0.00 38.22 2.83
262 263 4.803426 CTCCTGTGGCGGCGACTC 62.803 72.222 16.45 12.04 0.00 3.36
266 267 4.473520 ATTCCTCCTGTGGCGGCG 62.474 66.667 0.51 0.51 0.00 6.46
267 268 2.514824 GATTCCTCCTGTGGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
268 269 2.190578 GGATTCCTCCTGTGGCGG 59.809 66.667 0.00 0.00 38.65 6.13
291 292 0.739561 CGTCTTCTTCGAGTAGGGGG 59.260 60.000 0.00 0.00 0.00 5.40
292 293 0.100861 GCGTCTTCTTCGAGTAGGGG 59.899 60.000 0.00 0.00 0.00 4.79
293 294 0.100861 GGCGTCTTCTTCGAGTAGGG 59.899 60.000 0.00 0.00 0.00 3.53
294 295 0.809385 TGGCGTCTTCTTCGAGTAGG 59.191 55.000 0.00 0.00 0.00 3.18
295 296 2.097629 TCATGGCGTCTTCTTCGAGTAG 59.902 50.000 0.00 0.00 0.00 2.57
296 297 2.089201 TCATGGCGTCTTCTTCGAGTA 58.911 47.619 0.00 0.00 0.00 2.59
297 298 0.888619 TCATGGCGTCTTCTTCGAGT 59.111 50.000 0.00 0.00 0.00 4.18
298 299 1.554392 CTCATGGCGTCTTCTTCGAG 58.446 55.000 0.00 0.00 0.00 4.04
299 300 0.458543 GCTCATGGCGTCTTCTTCGA 60.459 55.000 0.00 0.00 0.00 3.71
300 301 0.737367 TGCTCATGGCGTCTTCTTCG 60.737 55.000 0.00 0.00 45.43 3.79
301 302 0.723981 GTGCTCATGGCGTCTTCTTC 59.276 55.000 0.00 0.00 45.43 2.87
302 303 0.674895 GGTGCTCATGGCGTCTTCTT 60.675 55.000 0.00 0.00 45.43 2.52
303 304 1.078848 GGTGCTCATGGCGTCTTCT 60.079 57.895 0.00 0.00 45.43 2.85
304 305 0.175760 TAGGTGCTCATGGCGTCTTC 59.824 55.000 0.00 0.00 45.43 2.87
305 306 0.176680 CTAGGTGCTCATGGCGTCTT 59.823 55.000 0.00 0.00 45.43 3.01
306 307 0.972983 ACTAGGTGCTCATGGCGTCT 60.973 55.000 0.00 0.29 45.43 4.18
307 308 0.528684 GACTAGGTGCTCATGGCGTC 60.529 60.000 0.00 0.00 45.43 5.19
308 309 1.517832 GACTAGGTGCTCATGGCGT 59.482 57.895 0.00 0.00 45.43 5.68
309 310 1.227380 GGACTAGGTGCTCATGGCG 60.227 63.158 0.00 0.00 45.43 5.69
310 311 0.253044 TTGGACTAGGTGCTCATGGC 59.747 55.000 0.00 0.00 42.22 4.40
311 312 3.244353 CCTATTGGACTAGGTGCTCATGG 60.244 52.174 0.00 0.00 34.66 3.66
312 313 3.244353 CCCTATTGGACTAGGTGCTCATG 60.244 52.174 0.00 0.00 37.20 3.07
313 314 2.975489 CCCTATTGGACTAGGTGCTCAT 59.025 50.000 0.00 0.00 37.20 2.90
314 315 2.292918 ACCCTATTGGACTAGGTGCTCA 60.293 50.000 0.00 0.00 37.20 4.26
315 316 2.399580 ACCCTATTGGACTAGGTGCTC 58.600 52.381 0.00 0.00 37.20 4.26
316 317 2.570386 ACCCTATTGGACTAGGTGCT 57.430 50.000 0.00 0.00 37.20 4.40
317 318 2.037381 GCTACCCTATTGGACTAGGTGC 59.963 54.545 0.00 0.00 37.20 5.01
318 319 2.633481 GGCTACCCTATTGGACTAGGTG 59.367 54.545 0.00 0.00 37.20 4.00
319 320 2.249214 TGGCTACCCTATTGGACTAGGT 59.751 50.000 0.00 0.00 37.20 3.08
320 321 2.972348 TGGCTACCCTATTGGACTAGG 58.028 52.381 0.00 0.00 38.43 3.02
321 322 4.704965 GTTTGGCTACCCTATTGGACTAG 58.295 47.826 0.00 0.00 38.00 2.57
322 323 3.133362 CGTTTGGCTACCCTATTGGACTA 59.867 47.826 0.00 0.00 38.00 2.59
323 324 2.093128 CGTTTGGCTACCCTATTGGACT 60.093 50.000 0.00 0.00 38.00 3.85
324 325 2.285977 CGTTTGGCTACCCTATTGGAC 58.714 52.381 0.00 0.00 38.00 4.02
325 326 1.407712 GCGTTTGGCTACCCTATTGGA 60.408 52.381 0.00 0.00 39.11 3.53
326 327 1.021968 GCGTTTGGCTACCCTATTGG 58.978 55.000 0.00 0.00 39.11 3.16
327 328 1.670811 CTGCGTTTGGCTACCCTATTG 59.329 52.381 0.00 0.00 44.05 1.90
328 329 1.408266 CCTGCGTTTGGCTACCCTATT 60.408 52.381 0.00 0.00 44.05 1.73
329 330 0.180406 CCTGCGTTTGGCTACCCTAT 59.820 55.000 0.00 0.00 44.05 2.57
330 331 0.905809 TCCTGCGTTTGGCTACCCTA 60.906 55.000 0.00 0.00 44.05 3.53
331 332 2.221299 TCCTGCGTTTGGCTACCCT 61.221 57.895 0.00 0.00 44.05 4.34
332 333 2.038837 GTCCTGCGTTTGGCTACCC 61.039 63.158 0.00 0.00 44.05 3.69
333 334 2.038837 GGTCCTGCGTTTGGCTACC 61.039 63.158 0.00 0.00 44.05 3.18
334 335 0.887387 TTGGTCCTGCGTTTGGCTAC 60.887 55.000 0.00 0.00 44.05 3.58
335 336 0.605319 CTTGGTCCTGCGTTTGGCTA 60.605 55.000 0.00 0.00 44.05 3.93
336 337 1.898574 CTTGGTCCTGCGTTTGGCT 60.899 57.895 0.00 0.00 44.05 4.75
337 338 2.644992 CTTGGTCCTGCGTTTGGC 59.355 61.111 0.00 0.00 43.96 4.52
338 339 2.644992 GCTTGGTCCTGCGTTTGG 59.355 61.111 0.00 0.00 0.00 3.28
339 340 1.733402 TTGGCTTGGTCCTGCGTTTG 61.733 55.000 0.00 0.00 0.00 2.93
340 341 1.454847 TTGGCTTGGTCCTGCGTTT 60.455 52.632 0.00 0.00 0.00 3.60
341 342 1.898574 CTTGGCTTGGTCCTGCGTT 60.899 57.895 0.00 0.00 0.00 4.84
342 343 2.281761 CTTGGCTTGGTCCTGCGT 60.282 61.111 0.00 0.00 0.00 5.24
343 344 2.826777 ATCCTTGGCTTGGTCCTGCG 62.827 60.000 0.00 0.00 0.00 5.18
344 345 1.000396 ATCCTTGGCTTGGTCCTGC 60.000 57.895 0.00 0.00 0.00 4.85
345 346 1.318158 GCATCCTTGGCTTGGTCCTG 61.318 60.000 0.00 0.00 0.00 3.86
346 347 1.000396 GCATCCTTGGCTTGGTCCT 60.000 57.895 0.00 0.00 0.00 3.85
347 348 1.304381 TGCATCCTTGGCTTGGTCC 60.304 57.895 0.00 0.00 0.00 4.46
348 349 1.941999 GCTGCATCCTTGGCTTGGTC 61.942 60.000 0.00 0.00 0.00 4.02
349 350 1.980772 GCTGCATCCTTGGCTTGGT 60.981 57.895 0.00 0.00 0.00 3.67
350 351 2.890371 GCTGCATCCTTGGCTTGG 59.110 61.111 0.00 0.00 0.00 3.61
351 352 2.488355 CGCTGCATCCTTGGCTTG 59.512 61.111 0.00 0.00 0.00 4.01
352 353 3.446570 GCGCTGCATCCTTGGCTT 61.447 61.111 0.00 0.00 0.00 4.35
356 357 3.869272 GACGGCGCTGCATCCTTG 61.869 66.667 18.15 0.00 0.00 3.61
381 382 3.095163 ATCCTCAGGGCAGCTGGG 61.095 66.667 17.12 6.99 0.00 4.45
382 383 2.372890 TGATCCTCAGGGCAGCTGG 61.373 63.158 17.12 0.00 0.00 4.85
383 384 1.153208 GTGATCCTCAGGGCAGCTG 60.153 63.158 10.11 10.11 0.00 4.24
384 385 2.373707 GGTGATCCTCAGGGCAGCT 61.374 63.158 8.82 0.00 0.00 4.24
385 386 2.191641 GGTGATCCTCAGGGCAGC 59.808 66.667 0.00 0.00 0.00 5.25
386 387 2.503061 CGGTGATCCTCAGGGCAG 59.497 66.667 0.00 0.00 0.00 4.85
387 388 3.785859 GCGGTGATCCTCAGGGCA 61.786 66.667 0.00 0.00 0.00 5.36
388 389 4.554036 GGCGGTGATCCTCAGGGC 62.554 72.222 0.00 0.00 0.00 5.19
389 390 3.083349 TGGCGGTGATCCTCAGGG 61.083 66.667 0.00 0.00 0.00 4.45
390 391 2.187946 GTGGCGGTGATCCTCAGG 59.812 66.667 0.00 0.00 0.00 3.86
391 392 2.187946 GGTGGCGGTGATCCTCAG 59.812 66.667 0.00 0.00 0.00 3.35
392 393 3.399181 GGGTGGCGGTGATCCTCA 61.399 66.667 0.00 0.00 0.00 3.86
393 394 3.399181 TGGGTGGCGGTGATCCTC 61.399 66.667 0.00 0.00 0.00 3.71
394 395 3.717294 GTGGGTGGCGGTGATCCT 61.717 66.667 0.00 0.00 0.00 3.24
396 397 3.894547 AACGTGGGTGGCGGTGATC 62.895 63.158 0.00 0.00 0.00 2.92
397 398 3.894547 GAACGTGGGTGGCGGTGAT 62.895 63.158 0.00 0.00 0.00 3.06
398 399 4.612412 GAACGTGGGTGGCGGTGA 62.612 66.667 0.00 0.00 0.00 4.02
399 400 4.920112 TGAACGTGGGTGGCGGTG 62.920 66.667 0.00 0.00 0.00 4.94
400 401 3.700831 TTTGAACGTGGGTGGCGGT 62.701 57.895 0.00 0.00 0.00 5.68
401 402 2.482333 TTTTGAACGTGGGTGGCGG 61.482 57.895 0.00 0.00 0.00 6.13
402 403 1.298788 GTTTTGAACGTGGGTGGCG 60.299 57.895 0.00 0.00 0.00 5.69
403 404 1.066752 GGTTTTGAACGTGGGTGGC 59.933 57.895 0.00 0.00 0.00 5.01
404 405 0.753848 AGGGTTTTGAACGTGGGTGG 60.754 55.000 0.00 0.00 0.00 4.61
405 406 1.970092 TAGGGTTTTGAACGTGGGTG 58.030 50.000 0.00 0.00 0.00 4.61
406 407 2.300433 GTTAGGGTTTTGAACGTGGGT 58.700 47.619 0.00 0.00 0.00 4.51
407 408 1.610038 GGTTAGGGTTTTGAACGTGGG 59.390 52.381 0.00 0.00 0.00 4.61
408 409 1.610038 GGGTTAGGGTTTTGAACGTGG 59.390 52.381 0.00 0.00 0.00 4.94
409 410 2.578786 AGGGTTAGGGTTTTGAACGTG 58.421 47.619 0.00 0.00 0.00 4.49
410 411 3.244665 CCTAGGGTTAGGGTTTTGAACGT 60.245 47.826 0.00 0.00 42.44 3.99
411 412 3.340928 CCTAGGGTTAGGGTTTTGAACG 58.659 50.000 0.00 0.00 42.44 3.95
412 413 3.087031 GCCTAGGGTTAGGGTTTTGAAC 58.913 50.000 11.72 0.00 45.66 3.18
413 414 2.290450 CGCCTAGGGTTAGGGTTTTGAA 60.290 50.000 11.72 0.00 45.66 2.69
414 415 1.279846 CGCCTAGGGTTAGGGTTTTGA 59.720 52.381 11.72 0.00 45.66 2.69
415 416 1.746470 CGCCTAGGGTTAGGGTTTTG 58.254 55.000 11.72 0.00 45.66 2.44
416 417 0.034767 GCGCCTAGGGTTAGGGTTTT 60.035 55.000 11.72 0.00 45.66 2.43
417 418 1.605992 GCGCCTAGGGTTAGGGTTT 59.394 57.895 11.72 0.00 45.66 3.27
418 419 2.372890 GGCGCCTAGGGTTAGGGTT 61.373 63.158 22.15 0.00 45.66 4.11
419 420 2.767073 GGCGCCTAGGGTTAGGGT 60.767 66.667 22.15 0.00 45.66 4.34
420 421 3.925090 CGGCGCCTAGGGTTAGGG 61.925 72.222 26.68 0.00 45.66 3.53
422 423 4.603946 GGCGGCGCCTAGGGTTAG 62.604 72.222 41.44 7.15 46.69 2.34
435 436 4.951963 GAGGCGATCGGAAGGCGG 62.952 72.222 18.30 0.00 38.03 6.13
436 437 3.832720 GAGAGGCGATCGGAAGGCG 62.833 68.421 18.30 0.00 38.03 5.52
437 438 2.028337 GAGAGGCGATCGGAAGGC 59.972 66.667 18.30 0.00 0.00 4.35
438 439 2.333225 CGAGAGGCGATCGGAAGG 59.667 66.667 18.30 0.00 44.57 3.46
462 463 1.293498 CACCACGTCTCCCTCAAGG 59.707 63.158 0.00 0.00 0.00 3.61
463 464 1.185618 TCCACCACGTCTCCCTCAAG 61.186 60.000 0.00 0.00 0.00 3.02
464 465 1.152419 TCCACCACGTCTCCCTCAA 60.152 57.895 0.00 0.00 0.00 3.02
465 466 1.906824 GTCCACCACGTCTCCCTCA 60.907 63.158 0.00 0.00 0.00 3.86
466 467 2.647158 GGTCCACCACGTCTCCCTC 61.647 68.421 0.00 0.00 35.64 4.30
467 468 2.603776 GGTCCACCACGTCTCCCT 60.604 66.667 0.00 0.00 35.64 4.20
468 469 3.703127 GGGTCCACCACGTCTCCC 61.703 72.222 0.00 0.00 39.85 4.30
469 470 4.065281 CGGGTCCACCACGTCTCC 62.065 72.222 0.00 0.00 40.22 3.71
470 471 4.736896 GCGGGTCCACCACGTCTC 62.737 72.222 0.00 0.00 40.22 3.36
475 476 3.469863 TTGACAGCGGGTCCACCAC 62.470 63.158 8.75 0.00 46.38 4.16
476 477 3.164977 TTGACAGCGGGTCCACCA 61.165 61.111 8.75 0.00 46.38 4.17
477 478 2.358737 CTTGACAGCGGGTCCACC 60.359 66.667 8.75 0.00 46.38 4.61
478 479 1.227853 AACTTGACAGCGGGTCCAC 60.228 57.895 8.75 0.00 46.38 4.02
479 480 1.227823 CAACTTGACAGCGGGTCCA 60.228 57.895 8.75 0.00 46.38 4.02
480 481 0.534203 TTCAACTTGACAGCGGGTCC 60.534 55.000 8.75 0.00 46.38 4.46
481 482 6.604141 GTTCATTCAACTTGACAGCGGGTC 62.604 50.000 4.80 4.80 38.28 4.46
482 483 1.202758 TCATTCAACTTGACAGCGGGT 60.203 47.619 0.00 0.00 0.00 5.28
483 484 1.522668 TCATTCAACTTGACAGCGGG 58.477 50.000 0.00 0.00 0.00 6.13
484 485 2.290367 TGTTCATTCAACTTGACAGCGG 59.710 45.455 0.00 0.00 35.79 5.52
485 486 3.242706 TGTGTTCATTCAACTTGACAGCG 60.243 43.478 0.00 0.00 35.79 5.18
486 487 4.291540 TGTGTTCATTCAACTTGACAGC 57.708 40.909 0.00 0.00 35.79 4.40
487 488 7.025365 CCATATGTGTTCATTCAACTTGACAG 58.975 38.462 1.24 0.00 35.79 3.51
488 489 6.570186 GCCATATGTGTTCATTCAACTTGACA 60.570 38.462 1.24 0.00 35.79 3.58
489 490 5.801947 GCCATATGTGTTCATTCAACTTGAC 59.198 40.000 1.24 0.00 35.79 3.18
490 491 5.105797 GGCCATATGTGTTCATTCAACTTGA 60.106 40.000 0.00 0.00 35.79 3.02
491 492 5.104374 GGCCATATGTGTTCATTCAACTTG 58.896 41.667 0.00 0.00 35.79 3.16
492 493 5.018809 AGGCCATATGTGTTCATTCAACTT 58.981 37.500 5.01 0.00 35.79 2.66
493 494 4.603131 AGGCCATATGTGTTCATTCAACT 58.397 39.130 5.01 0.00 35.79 3.16
494 495 4.641989 AGAGGCCATATGTGTTCATTCAAC 59.358 41.667 5.01 0.00 35.70 3.18
495 496 4.858850 AGAGGCCATATGTGTTCATTCAA 58.141 39.130 5.01 0.00 35.70 2.69
496 497 4.508551 AGAGGCCATATGTGTTCATTCA 57.491 40.909 5.01 0.00 35.70 2.57
497 498 4.037208 CCAAGAGGCCATATGTGTTCATTC 59.963 45.833 5.01 0.00 35.70 2.67
498 499 3.956199 CCAAGAGGCCATATGTGTTCATT 59.044 43.478 5.01 0.00 35.70 2.57
499 500 3.202818 TCCAAGAGGCCATATGTGTTCAT 59.797 43.478 5.01 0.00 34.95 2.57
500 501 2.575735 TCCAAGAGGCCATATGTGTTCA 59.424 45.455 5.01 0.00 33.74 3.18
501 502 3.281727 TCCAAGAGGCCATATGTGTTC 57.718 47.619 5.01 0.00 33.74 3.18
521 522 1.986698 CGTAACGGATCGGTTCAGTT 58.013 50.000 20.54 9.06 43.78 3.16
538 539 4.935808 GGTTTGTCTCATAAGATTGACCGT 59.064 41.667 0.00 0.00 33.08 4.83
540 541 6.817765 TTGGTTTGTCTCATAAGATTGACC 57.182 37.500 0.00 0.00 33.08 4.02
541 542 7.591426 GTGTTTGGTTTGTCTCATAAGATTGAC 59.409 37.037 0.00 0.00 33.08 3.18
544 545 7.068103 TGTGTGTTTGGTTTGTCTCATAAGATT 59.932 33.333 0.00 0.00 33.08 2.40
548 549 5.650266 AGTGTGTGTTTGGTTTGTCTCATAA 59.350 36.000 0.00 0.00 0.00 1.90
549 550 5.189928 AGTGTGTGTTTGGTTTGTCTCATA 58.810 37.500 0.00 0.00 0.00 2.15
554 555 2.666022 GCAAGTGTGTGTTTGGTTTGTC 59.334 45.455 0.00 0.00 0.00 3.18
556 557 2.681706 TGCAAGTGTGTGTTTGGTTTG 58.318 42.857 0.00 0.00 0.00 2.93
582 583 0.187117 TTTGGTTGGGCAGATCCACA 59.813 50.000 0.00 0.00 36.38 4.17
603 604 4.379918 GGCTTGTTTTATCCTGCACTTCTC 60.380 45.833 0.00 0.00 0.00 2.87
626 627 0.893727 GTTAATATGGGGCCGCCCTG 60.894 60.000 27.94 0.00 44.66 4.45
638 639 7.707893 CGATCGGGGAAAATATACCGTTAATAT 59.292 37.037 7.38 0.00 46.06 1.28
640 641 5.870978 CGATCGGGGAAAATATACCGTTAAT 59.129 40.000 7.38 0.00 46.06 1.40
686 687 4.514577 CTCGCCGCCCGTCTGATT 62.515 66.667 0.00 0.00 38.35 2.57
742 743 0.249953 TTACGCGAAGGTTCCTTGCA 60.250 50.000 15.93 0.00 0.00 4.08
866 875 3.193479 GGATTTGGGTAGGTTTTCTGCTG 59.807 47.826 0.00 0.00 0.00 4.41
923 932 1.075536 GGTGGGAGATTGGGAGTTTGT 59.924 52.381 0.00 0.00 0.00 2.83
929 938 1.689233 CGGAGGTGGGAGATTGGGA 60.689 63.158 0.00 0.00 0.00 4.37
958 967 2.912542 CGCTGCGGGAGAGGGATA 60.913 66.667 15.40 0.00 0.00 2.59
1086 1095 1.401199 GGGCGTCTCTCACAGTAGTAC 59.599 57.143 0.00 0.00 0.00 2.73
1171 1190 2.164827 ACCGACCTGTTCAAACCAAAAC 59.835 45.455 0.00 0.00 0.00 2.43
1290 1309 0.328258 AGGGGGCAGATGTGTACAAC 59.672 55.000 0.00 0.00 0.00 3.32
1292 1311 1.072266 AAAGGGGGCAGATGTGTACA 58.928 50.000 0.00 0.00 0.00 2.90
1308 1328 4.727235 AGGAAACGAGCGAAAGTAAAAG 57.273 40.909 0.00 0.00 0.00 2.27
1386 2468 1.889829 CGTTCCCAAACCCTTAATGCA 59.110 47.619 0.00 0.00 31.27 3.96
1412 2494 1.792949 CAGGCGGCTAAATACATCGTC 59.207 52.381 12.74 0.00 0.00 4.20
1424 2506 2.481449 CGTATTCTTCTTACAGGCGGCT 60.481 50.000 5.25 5.25 0.00 5.52
1426 2508 2.100252 TCCGTATTCTTCTTACAGGCGG 59.900 50.000 0.00 0.00 38.20 6.13
1427 2509 3.431922 TCCGTATTCTTCTTACAGGCG 57.568 47.619 0.00 0.00 0.00 5.52
1534 2641 2.170607 GGAGTCAATTCCGAGGATTCCA 59.829 50.000 5.29 0.00 37.39 3.53
1543 2650 2.472695 TTCAGGTGGAGTCAATTCCG 57.527 50.000 0.00 0.00 40.27 4.30
1577 2684 4.460263 AGTGGTTCAGTTACTTGATTGCA 58.540 39.130 0.00 0.00 0.00 4.08
1579 2686 6.233430 CTGAGTGGTTCAGTTACTTGATTG 57.767 41.667 0.00 0.00 46.77 2.67
1591 2698 2.945440 GCCCATATTGCTGAGTGGTTCA 60.945 50.000 0.00 0.00 0.00 3.18
1647 2754 6.986817 GGAGAACACAGCACATACACTAATAT 59.013 38.462 0.00 0.00 0.00 1.28
1673 2780 1.581934 TCAAAGCGGTCACAAGACAG 58.418 50.000 0.00 0.00 46.80 3.51
1686 2793 1.588082 CAGTGGGTGGCATCAAAGC 59.412 57.895 0.00 0.00 0.00 3.51
1718 2825 4.444733 CCATCCAATCATGTAGCACTACCA 60.445 45.833 5.40 0.00 35.26 3.25
1730 2837 3.660959 AGCCCAAAATCCATCCAATCAT 58.339 40.909 0.00 0.00 0.00 2.45
1733 2840 3.054948 CACAAGCCCAAAATCCATCCAAT 60.055 43.478 0.00 0.00 0.00 3.16
1740 2847 3.683365 AACATCACAAGCCCAAAATCC 57.317 42.857 0.00 0.00 0.00 3.01
2017 3124 8.964476 ACTGAAACAGAATAAGAAGAGTTCAA 57.036 30.769 5.76 0.00 35.18 2.69
2018 3125 8.204160 TGACTGAAACAGAATAAGAAGAGTTCA 58.796 33.333 5.76 0.00 35.18 3.18
2019 3126 8.594881 TGACTGAAACAGAATAAGAAGAGTTC 57.405 34.615 5.76 0.00 35.18 3.01
2036 3144 6.499106 TGGCTAATCCTGATATGACTGAAA 57.501 37.500 0.00 0.00 35.26 2.69
2058 3166 7.066163 TGAGGTGCATTAGTGAGATTACAAATG 59.934 37.037 0.00 0.00 0.00 2.32
2066 3174 4.910195 TGTTTGAGGTGCATTAGTGAGAT 58.090 39.130 0.00 0.00 0.00 2.75
2069 3177 4.037446 GGTTTGTTTGAGGTGCATTAGTGA 59.963 41.667 0.00 0.00 0.00 3.41
2076 3184 0.459489 GCAGGTTTGTTTGAGGTGCA 59.541 50.000 0.00 0.00 0.00 4.57
2077 3185 0.459489 TGCAGGTTTGTTTGAGGTGC 59.541 50.000 0.00 0.00 0.00 5.01
2080 3188 3.457610 AATGTGCAGGTTTGTTTGAGG 57.542 42.857 0.00 0.00 0.00 3.86
2081 3189 5.146482 CAAAATGTGCAGGTTTGTTTGAG 57.854 39.130 8.01 0.00 0.00 3.02
2229 3337 6.256104 TCTGAAAGTTTCAACATTGCACAATG 59.744 34.615 18.55 19.25 42.92 2.82
2233 3341 6.256321 ACATTCTGAAAGTTTCAACATTGCAC 59.744 34.615 18.55 0.00 39.58 4.57
2268 3376 6.862209 TGTTAAAGGCCAGTTAATGCATAAG 58.138 36.000 5.01 0.00 0.00 1.73
2275 3383 5.076873 TCAAGCTGTTAAAGGCCAGTTAAT 58.923 37.500 5.01 0.00 0.00 1.40
2329 3437 5.536554 TGAGAGCTTTTCTAATTTCAGCG 57.463 39.130 0.00 0.00 35.87 5.18
2437 3545 2.599677 AGGATAGCCGGAGTTAAGGAG 58.400 52.381 5.05 0.00 39.96 3.69
2476 3594 3.378112 TCATAGAAAAGCCAAATCTGCCG 59.622 43.478 0.00 0.00 0.00 5.69
2481 3599 7.254658 CCAAATGCATCATAGAAAAGCCAAATC 60.255 37.037 0.00 0.00 0.00 2.17
2575 3693 1.670087 CGTGAGCTGTTGTACCTCTGG 60.670 57.143 0.00 0.00 0.00 3.86
2589 3707 1.294659 CTTCAACCTGCCTCGTGAGC 61.295 60.000 0.00 0.00 0.00 4.26
2692 3819 2.977914 TGCTGTGAGAATAGCCAACTC 58.022 47.619 0.00 0.00 39.15 3.01
3052 4179 1.749033 GGATACCAGAGGAAGGCGG 59.251 63.158 0.00 0.00 0.00 6.13
3098 4225 3.746940 GTAAGTGTGGTGCTCCCTTTTA 58.253 45.455 1.59 0.00 0.00 1.52
3139 4266 4.692155 CAGTCGCCAATTCTCATGCATATA 59.308 41.667 0.00 0.00 0.00 0.86
3170 4297 8.564574 TGTTTTAAGTGGTTTATCACAGATCAC 58.435 33.333 0.00 0.00 39.93 3.06
3182 4309 5.359576 TCACTGATGCTGTTTTAAGTGGTTT 59.640 36.000 0.00 0.00 36.53 3.27
3194 4321 2.830321 TCAGATCTGTCACTGATGCTGT 59.170 45.455 21.92 0.00 38.08 4.40
3197 4324 3.593096 TGTTCAGATCTGTCACTGATGC 58.407 45.455 21.92 4.48 41.71 3.91
3292 4425 5.534654 TGGACTGAAGTGATAAAAACAAGGG 59.465 40.000 0.00 0.00 0.00 3.95
3371 4504 5.927689 ACAAATGATAATTGTGTGTGCTTGG 59.072 36.000 0.00 0.00 39.43 3.61
3434 4575 5.773176 TGTGTGTATCTTCCAGAGTAGAACA 59.227 40.000 0.00 0.00 0.00 3.18
3465 4606 7.358848 CCACGCCTAACAATATTCAAACAAAAC 60.359 37.037 0.00 0.00 0.00 2.43
3482 4623 1.169661 CCACAGTTTGCCACGCCTAA 61.170 55.000 0.00 0.00 0.00 2.69
3515 4656 1.607467 ATGACAAGGCTTGGGGCAC 60.607 57.895 29.26 15.39 44.01 5.01
3531 4672 4.320057 GCAAGAAAACAGAGACTGGTCATG 60.320 45.833 3.51 4.37 35.51 3.07
3570 4712 1.348064 TCAGGAGGGTTGTCGACATT 58.652 50.000 20.80 5.58 0.00 2.71
3606 4748 1.477923 GGAAAACACAGGTAGCACCCA 60.478 52.381 0.00 0.00 39.75 4.51
3632 4774 9.681692 CAATGATGAAAACTGATTGTAACTTCA 57.318 29.630 0.00 0.00 0.00 3.02
3672 4814 2.899900 GTTGCCATTTTCTCTCCCCTTT 59.100 45.455 0.00 0.00 0.00 3.11
3725 4872 7.930217 TCAAGTAACAAGATGAAGAAACCAAG 58.070 34.615 0.00 0.00 0.00 3.61
3749 4899 6.203338 ACAAATCAATCAAACATGCAAGGTTC 59.797 34.615 7.48 0.00 41.66 3.62
3753 4903 5.467399 ACCACAAATCAATCAAACATGCAAG 59.533 36.000 0.00 0.00 0.00 4.01
3835 4985 5.708877 TCACAATTTGATGAGCAATCACA 57.291 34.783 2.79 0.00 45.17 3.58
3846 4996 3.972133 TCCTGAGCCATCACAATTTGAT 58.028 40.909 2.79 0.00 46.75 2.57
3847 4997 3.438216 TCCTGAGCCATCACAATTTGA 57.562 42.857 2.79 0.00 39.11 2.69
3848 4998 4.524316 TTTCCTGAGCCATCACAATTTG 57.476 40.909 0.00 0.00 0.00 2.32
3849 4999 5.484715 CATTTTCCTGAGCCATCACAATTT 58.515 37.500 0.00 0.00 0.00 1.82
3850 5000 4.081309 CCATTTTCCTGAGCCATCACAATT 60.081 41.667 0.00 0.00 0.00 2.32
3851 5001 3.449737 CCATTTTCCTGAGCCATCACAAT 59.550 43.478 0.00 0.00 0.00 2.71
3852 5002 2.827322 CCATTTTCCTGAGCCATCACAA 59.173 45.455 0.00 0.00 0.00 3.33
3859 5009 2.893489 ACAGAAACCATTTTCCTGAGCC 59.107 45.455 0.00 0.00 42.00 4.70
3913 5081 6.544931 AGGTACAAGTAACCTTTTTCACCTTC 59.455 38.462 0.00 0.00 45.26 3.46
3966 5135 4.256110 TGATGTGAGACATGCACCTTAAG 58.744 43.478 0.00 0.00 39.27 1.85
3986 5155 5.985530 CACGTCTGCTATTATTCTTCCATGA 59.014 40.000 0.00 0.00 0.00 3.07
4047 5216 4.520179 AGACCAAAAAGTAGTGACCGTTT 58.480 39.130 0.00 0.00 0.00 3.60
4051 5220 9.444600 TGATTAATAGACCAAAAAGTAGTGACC 57.555 33.333 0.00 0.00 0.00 4.02
4333 5502 4.142790 GGGCAGAGACATGATCATTGAAT 58.857 43.478 5.16 0.00 0.00 2.57
4609 5992 2.103771 GCTCTGAGGATTGTAGCCATCA 59.896 50.000 6.83 0.00 0.00 3.07
4645 6028 3.258372 ACGTCTGAGGATAAGCTGAAACA 59.742 43.478 4.12 0.00 0.00 2.83
4666 6049 1.196104 TGTAGGGTGGCTGGTGGTAC 61.196 60.000 0.00 0.00 0.00 3.34
4820 6203 4.347360 CATCACTAGCAGGATGGAATGA 57.653 45.455 10.33 0.00 37.77 2.57
5008 6391 4.069869 GCTTTGTGAGCCTCAGCA 57.930 55.556 0.00 0.00 46.01 4.41
5145 6528 3.305398 ACACAAGATGTCTTCTCCGAC 57.695 47.619 0.00 0.00 36.54 4.79
5241 6624 5.395657 CATCTCCTAGATTTGTGTAGCCACA 60.396 44.000 0.00 0.00 40.37 4.17
5289 6675 5.173774 ACAAATGACTCAATGTGACACAC 57.826 39.130 11.22 1.42 34.56 3.82
5652 7410 5.476254 TGGTTGCATCAACTCAATAATCACA 59.524 36.000 9.23 0.00 43.14 3.58
5653 7411 5.953183 TGGTTGCATCAACTCAATAATCAC 58.047 37.500 9.23 0.00 43.14 3.06
5765 7524 8.844865 ATAGTCACCATATAGGATATGAAGCA 57.155 34.615 7.84 0.00 41.22 3.91
5861 7620 2.808523 TGAGATGTCGATGGATGCTC 57.191 50.000 0.00 0.00 0.00 4.26
5929 7688 3.803778 CCTGTGGAGTTGTTGCAAAATTC 59.196 43.478 0.00 4.69 0.00 2.17
5963 7722 2.224402 GCCTCCTTGCTTCCTATCGAAT 60.224 50.000 0.00 0.00 0.00 3.34
5966 7725 0.465705 TGCCTCCTTGCTTCCTATCG 59.534 55.000 0.00 0.00 0.00 2.92
6036 7795 4.256110 CTGAAGTGAGGTTCATATGCACA 58.744 43.478 7.79 0.00 35.88 4.57
6037 7796 3.064545 GCTGAAGTGAGGTTCATATGCAC 59.935 47.826 0.00 0.00 35.88 4.57
6087 7846 0.526524 CGTCTCTCGTTCCAGCCATC 60.527 60.000 0.00 0.00 34.52 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.