Multiple sequence alignment - TraesCS7B01G190300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G190300 chr7B 100.000 6244 0 0 1 6244 327278386 327272143 0.000000e+00 11531.0
1 TraesCS7B01G190300 chr7B 93.461 1254 77 5 2491 3740 43881783 43880531 0.000000e+00 1857.0
2 TraesCS7B01G190300 chr7B 86.555 714 59 16 3932 4611 43880510 43879800 0.000000e+00 752.0
3 TraesCS7B01G190300 chr7B 81.523 893 111 25 1017 1878 43883113 43882244 0.000000e+00 686.0
4 TraesCS7B01G190300 chr7B 86.855 601 53 14 4739 5330 43879804 43879221 0.000000e+00 649.0
5 TraesCS7B01G190300 chr7B 86.463 229 27 4 5772 5998 43879032 43878806 1.340000e-61 248.0
6 TraesCS7B01G190300 chr7B 81.911 293 39 7 2094 2378 43882111 43881825 1.050000e-57 235.0
7 TraesCS7B01G190300 chr7B 86.792 212 8 7 6012 6214 43878829 43878629 1.050000e-52 219.0
8 TraesCS7B01G190300 chr7B 94.074 135 7 1 640 774 81420748 81420881 2.950000e-48 204.0
9 TraesCS7B01G190300 chr7B 93.382 136 9 0 646 781 658243589 658243454 1.060000e-47 202.0
10 TraesCS7B01G190300 chr7B 92.126 127 8 1 5328 5454 171992295 171992419 1.790000e-40 178.0
11 TraesCS7B01G190300 chr7B 84.118 170 18 5 5480 5646 43879163 43879000 8.380000e-34 156.0
12 TraesCS7B01G190300 chr7B 83.333 72 7 3 3786 3853 71349207 71349277 1.880000e-05 62.1
13 TraesCS7B01G190300 chr7D 96.977 3738 95 11 2271 6001 185139576 185135850 0.000000e+00 6261.0
14 TraesCS7B01G190300 chr7D 94.329 1393 58 3 853 2233 185140964 185139581 0.000000e+00 2115.0
15 TraesCS7B01G190300 chr7D 92.590 1363 93 8 2384 3740 91393588 91392228 0.000000e+00 1951.0
16 TraesCS7B01G190300 chr7D 85.933 1436 131 36 3946 5330 91392198 91390783 0.000000e+00 1467.0
17 TraesCS7B01G190300 chr7D 91.411 652 50 4 1 647 45126969 45127619 0.000000e+00 889.0
18 TraesCS7B01G190300 chr7D 79.003 1043 131 44 902 1901 91395409 91394412 3.180000e-177 632.0
19 TraesCS7B01G190300 chr7D 93.802 242 10 3 6003 6244 185135885 185135649 5.950000e-95 359.0
20 TraesCS7B01G190300 chr7D 88.780 205 22 1 5797 6001 91390565 91390362 3.740000e-62 250.0
21 TraesCS7B01G190300 chr7D 86.364 220 12 5 6003 6214 91390397 91390188 2.270000e-54 224.0
22 TraesCS7B01G190300 chr7D 76.459 514 55 29 1902 2364 91394446 91393948 1.050000e-52 219.0
23 TraesCS7B01G190300 chr7D 90.411 146 14 0 641 786 21001877 21001732 6.390000e-45 193.0
24 TraesCS7B01G190300 chr7D 91.339 127 10 1 5333 5459 135760639 135760764 8.320000e-39 172.0
25 TraesCS7B01G190300 chr7D 94.444 36 2 0 3817 3852 389467781 389467746 8.740000e-04 56.5
26 TraesCS7B01G190300 chr7A 95.585 3873 124 19 2164 6001 192671116 192667256 0.000000e+00 6161.0
27 TraesCS7B01G190300 chr7A 93.168 1288 81 7 2491 3773 93074083 93075368 0.000000e+00 1884.0
28 TraesCS7B01G190300 chr7A 85.827 1517 141 34 3847 5314 93075418 93076909 0.000000e+00 1543.0
29 TraesCS7B01G190300 chr7A 92.636 937 37 12 781 1695 192672886 192671960 0.000000e+00 1319.0
30 TraesCS7B01G190300 chr7A 92.298 766 47 6 1070 1833 192818404 192817649 0.000000e+00 1077.0
31 TraesCS7B01G190300 chr7A 95.634 481 21 0 1693 2173 192671857 192671377 0.000000e+00 773.0
32 TraesCS7B01G190300 chr7A 79.883 1024 129 46 902 1884 93072640 93073627 0.000000e+00 678.0
33 TraesCS7B01G190300 chr7A 86.032 315 22 5 781 1074 192830922 192830609 1.010000e-82 318.0
34 TraesCS7B01G190300 chr7A 82.313 294 39 7 2094 2378 93073756 93074045 6.250000e-60 243.0
35 TraesCS7B01G190300 chr7A 85.845 219 14 7 6003 6214 93077277 93077485 3.790000e-52 217.0
36 TraesCS7B01G190300 chr7A 91.608 143 12 0 641 783 467784917 467785059 1.370000e-46 198.0
37 TraesCS7B01G190300 chr7A 92.969 128 9 0 5328 5455 701309238 701309111 2.970000e-43 187.0
38 TraesCS7B01G190300 chr7A 82.993 147 18 4 5497 5640 93076986 93077128 6.570000e-25 126.0
39 TraesCS7B01G190300 chr7A 82.090 67 10 2 3784 3850 460754645 460754581 8.740000e-04 56.5
40 TraesCS7B01G190300 chr5B 94.145 649 37 1 1 648 502476745 502477393 0.000000e+00 987.0
41 TraesCS7B01G190300 chr5B 89.032 155 16 1 641 795 502477414 502477567 2.300000e-44 191.0
42 TraesCS7B01G190300 chr5B 91.603 131 10 1 5328 5458 617821213 617821342 4.970000e-41 180.0
43 TraesCS7B01G190300 chr1B 93.519 648 42 0 1 648 453117568 453116921 0.000000e+00 965.0
44 TraesCS7B01G190300 chr1B 92.615 650 45 1 1 647 332764205 332763556 0.000000e+00 931.0
45 TraesCS7B01G190300 chr1B 92.427 647 48 1 1 647 354581635 354582280 0.000000e+00 922.0
46 TraesCS7B01G190300 chr1B 87.748 808 69 12 1 779 456431780 456430974 0.000000e+00 917.0
47 TraesCS7B01G190300 chr1B 90.769 650 56 4 1 648 90269086 90268439 0.000000e+00 865.0
48 TraesCS7B01G190300 chr1B 91.270 126 11 0 5333 5458 453762749 453762624 8.320000e-39 172.0
49 TraesCS7B01G190300 chr1B 95.349 43 2 0 3814 3856 22881930 22881972 1.120000e-07 69.4
50 TraesCS7B01G190300 chr1B 92.683 41 2 1 3809 3849 507415575 507415614 2.430000e-04 58.4
51 TraesCS7B01G190300 chr1B 94.444 36 2 0 3783 3818 512989047 512989082 8.740000e-04 56.5
52 TraesCS7B01G190300 chr4A 91.766 668 48 6 3046 3711 439068900 439068238 0.000000e+00 922.0
53 TraesCS7B01G190300 chr4A 91.209 182 16 0 3972 4153 439068241 439068060 1.340000e-61 248.0
54 TraesCS7B01G190300 chr4A 88.439 173 17 2 4228 4399 439068064 439067894 8.200000e-49 206.0
55 TraesCS7B01G190300 chr4A 94.531 128 6 1 5328 5455 381220473 381220599 4.940000e-46 196.0
56 TraesCS7B01G190300 chr4A 85.507 69 5 4 3786 3854 24939659 24939596 4.040000e-07 67.6
57 TraesCS7B01G190300 chr3B 86.797 818 67 20 1 785 529409308 529408499 0.000000e+00 874.0
58 TraesCS7B01G190300 chr2B 90.909 649 54 4 1 646 454348327 454347681 0.000000e+00 867.0
59 TraesCS7B01G190300 chr4D 80.612 490 71 14 5528 5998 189583325 189583809 2.140000e-94 357.0
60 TraesCS7B01G190300 chr4D 91.129 124 11 0 5333 5456 391290418 391290295 1.080000e-37 169.0
61 TraesCS7B01G190300 chr4D 91.057 123 11 0 5333 5455 36413240 36413362 3.870000e-37 167.0
62 TraesCS7B01G190300 chr4D 89.844 128 13 0 5327 5454 614526 614653 1.390000e-36 165.0
63 TraesCS7B01G190300 chr4D 89.844 128 13 0 5328 5455 28238568 28238441 1.390000e-36 165.0
64 TraesCS7B01G190300 chr4D 90.323 124 12 0 5333 5456 277821431 277821308 5.010000e-36 163.0
65 TraesCS7B01G190300 chr4D 89.231 130 14 0 5333 5462 291740467 291740596 5.010000e-36 163.0
66 TraesCS7B01G190300 chr4D 100.000 36 0 0 3817 3852 211388591 211388556 4.040000e-07 67.6
67 TraesCS7B01G190300 chr4D 87.719 57 6 1 3783 3839 498063714 498063769 1.450000e-06 65.8
68 TraesCS7B01G190300 chr4D 94.737 38 1 1 3814 3851 26251930 26251966 2.430000e-04 58.4
69 TraesCS7B01G190300 chr4D 97.143 35 0 1 3818 3852 323574866 323574833 2.430000e-04 58.4
70 TraesCS7B01G190300 chr4D 92.105 38 3 0 3814 3851 34710641 34710678 3.000000e-03 54.7
71 TraesCS7B01G190300 chr4D 100.000 29 0 0 3826 3854 480989585 480989613 3.000000e-03 54.7
72 TraesCS7B01G190300 chr1D 92.908 141 10 0 646 786 430107075 430106935 8.200000e-49 206.0
73 TraesCS7B01G190300 chr1D 93.284 134 9 0 641 774 342850978 342850845 1.370000e-46 198.0
74 TraesCS7B01G190300 chr1D 91.129 124 11 0 5333 5456 127143397 127143274 1.080000e-37 169.0
75 TraesCS7B01G190300 chr1D 90.323 124 12 0 5333 5456 264457600 264457723 5.010000e-36 163.0
76 TraesCS7B01G190300 chr1D 90.244 123 12 0 5333 5455 445057550 445057672 1.800000e-35 161.0
77 TraesCS7B01G190300 chr1D 90.164 122 12 0 5333 5454 158107768 158107647 6.480000e-35 159.0
78 TraesCS7B01G190300 chr1D 89.516 124 13 0 5333 5456 12456323 12456446 2.330000e-34 158.0
79 TraesCS7B01G190300 chr1D 88.372 129 15 0 5326 5454 44666128 44666256 8.380000e-34 156.0
80 TraesCS7B01G190300 chr1D 88.976 127 13 1 5333 5459 90518740 90518865 8.380000e-34 156.0
81 TraesCS7B01G190300 chr1D 89.344 122 13 0 5333 5454 73688190 73688069 3.010000e-33 154.0
82 TraesCS7B01G190300 chr1D 88.281 128 15 0 5327 5454 145199286 145199413 3.010000e-33 154.0
83 TraesCS7B01G190300 chr1D 97.222 36 0 1 3817 3852 189656662 189656696 6.760000e-05 60.2
84 TraesCS7B01G190300 chr1D 90.244 41 3 1 3785 3825 463974337 463974376 1.100000e-02 52.8
85 TraesCS7B01G190300 chr6D 94.030 134 8 0 641 774 387995196 387995063 2.950000e-48 204.0
86 TraesCS7B01G190300 chr6D 91.129 124 11 0 5333 5456 126108383 126108260 1.080000e-37 169.0
87 TraesCS7B01G190300 chr6D 89.516 124 13 0 5333 5456 137242795 137242918 2.330000e-34 158.0
88 TraesCS7B01G190300 chr6D 88.462 130 14 1 5333 5461 95896091 95895962 8.380000e-34 156.0
89 TraesCS7B01G190300 chr6D 100.000 30 0 0 3784 3813 429022512 429022541 8.740000e-04 56.5
90 TraesCS7B01G190300 chr6D 94.286 35 2 0 3786 3820 277664867 277664833 3.000000e-03 54.7
91 TraesCS7B01G190300 chr3D 92.308 143 9 1 646 786 574248125 574248267 1.060000e-47 202.0
92 TraesCS7B01G190300 chr3D 90.066 151 13 2 641 789 441134816 441134666 1.780000e-45 195.0
93 TraesCS7B01G190300 chr3D 91.603 131 11 0 5328 5458 251316138 251316008 1.380000e-41 182.0
94 TraesCS7B01G190300 chr3D 91.935 124 10 0 5333 5456 91666571 91666448 2.310000e-39 174.0
95 TraesCS7B01G190300 chr3D 91.803 122 10 0 5333 5454 323763306 323763185 2.990000e-38 171.0
96 TraesCS7B01G190300 chr3D 97.143 35 1 0 3784 3818 58125614 58125580 6.760000e-05 60.2
97 TraesCS7B01G190300 chr3D 94.737 38 2 0 3814 3851 172378223 172378260 6.760000e-05 60.2
98 TraesCS7B01G190300 chr3D 92.683 41 2 1 3817 3856 116015536 116015576 2.430000e-04 58.4
99 TraesCS7B01G190300 chr3D 97.059 34 1 0 3817 3850 608249678 608249645 2.430000e-04 58.4
100 TraesCS7B01G190300 chr3D 90.244 41 3 1 3785 3825 571897520 571897481 1.100000e-02 52.8
101 TraesCS7B01G190300 chr5D 89.937 159 10 5 641 795 526760353 526760509 3.820000e-47 200.0
102 TraesCS7B01G190300 chr5D 91.489 141 12 0 641 781 536698945 536698805 1.780000e-45 195.0
103 TraesCS7B01G190300 chr5D 90.769 130 11 1 5333 5462 115924527 115924655 8.320000e-39 172.0
104 TraesCS7B01G190300 chr5D 91.129 124 11 0 5333 5456 183633963 183634086 1.080000e-37 169.0
105 TraesCS7B01G190300 chr5D 89.922 129 13 0 5333 5461 241844199 241844071 3.870000e-37 167.0
106 TraesCS7B01G190300 chr5D 95.000 40 2 0 3817 3856 452219429 452219390 5.230000e-06 63.9
107 TraesCS7B01G190300 chr5D 100.000 31 0 0 3783 3813 342698124 342698154 2.430000e-04 58.4
108 TraesCS7B01G190300 chr5D 92.308 39 3 0 3814 3852 547518622 547518660 8.740000e-04 56.5
109 TraesCS7B01G190300 chr3A 91.791 134 11 0 5322 5455 332556160 332556293 2.970000e-43 187.0
110 TraesCS7B01G190300 chr3A 100.000 36 0 0 3785 3820 169231574 169231539 4.040000e-07 67.6
111 TraesCS7B01G190300 chr3A 100.000 34 0 0 3785 3818 169251412 169251379 5.230000e-06 63.9
112 TraesCS7B01G190300 chrUn 92.969 128 8 1 5328 5455 52974728 52974602 1.070000e-42 185.0
113 TraesCS7B01G190300 chrUn 97.297 37 1 0 3783 3819 212342441 212342405 5.230000e-06 63.9
114 TraesCS7B01G190300 chrUn 94.286 35 2 0 3784 3818 83668106 83668072 3.000000e-03 54.7
115 TraesCS7B01G190300 chrUn 100.000 28 0 0 3825 3852 196940090 196940063 1.100000e-02 52.8
116 TraesCS7B01G190300 chr6B 90.141 142 13 1 5313 5454 146149454 146149594 3.840000e-42 183.0
117 TraesCS7B01G190300 chr6B 90.909 132 11 1 5327 5458 479843470 479843600 6.430000e-40 176.0
118 TraesCS7B01G190300 chr1A 90.698 129 12 0 5327 5455 234234141 234234013 8.320000e-39 172.0
119 TraesCS7B01G190300 chr6A 88.028 142 16 1 5313 5454 88080410 88080550 3.870000e-37 167.0
120 TraesCS7B01G190300 chr6A 97.297 37 1 0 3785 3821 205095269 205095233 5.230000e-06 63.9
121 TraesCS7B01G190300 chr6A 97.059 34 0 1 3784 3817 32605225 32605257 8.740000e-04 56.5
122 TraesCS7B01G190300 chr2A 86.957 69 6 3 3781 3849 2340252 2340187 2.410000e-09 75.0
123 TraesCS7B01G190300 chr5A 95.349 43 2 0 3814 3856 367368698 367368740 1.120000e-07 69.4
124 TraesCS7B01G190300 chr5A 93.182 44 3 0 3814 3857 491315817 491315860 1.450000e-06 65.8
125 TraesCS7B01G190300 chr5A 97.222 36 1 0 3783 3818 524672278 524672243 1.880000e-05 62.1
126 TraesCS7B01G190300 chr4B 100.000 36 0 0 3817 3852 282886924 282886889 4.040000e-07 67.6
127 TraesCS7B01G190300 chr4B 93.182 44 0 3 3817 3858 650697327 650697285 1.880000e-05 62.1
128 TraesCS7B01G190300 chr2D 91.111 45 2 2 3814 3857 28058788 28058831 6.760000e-05 60.2
129 TraesCS7B01G190300 chr2D 92.683 41 1 2 3818 3857 28413457 28413496 2.430000e-04 58.4
130 TraesCS7B01G190300 chr2D 97.059 34 1 0 3785 3818 495841191 495841224 2.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G190300 chr7B 327272143 327278386 6243 True 11531.000000 11531 100.000000 1 6244 1 chr7B.!!$R1 6243
1 TraesCS7B01G190300 chr7B 43878629 43883113 4484 True 600.250000 1857 85.959750 1017 6214 8 chr7B.!!$R3 5197
2 TraesCS7B01G190300 chr7D 185135649 185140964 5315 True 2911.666667 6261 95.036000 853 6244 3 chr7D.!!$R4 5391
3 TraesCS7B01G190300 chr7D 45126969 45127619 650 False 889.000000 889 91.411000 1 647 1 chr7D.!!$F1 646
4 TraesCS7B01G190300 chr7D 91390188 91395409 5221 True 790.500000 1951 84.854833 902 6214 6 chr7D.!!$R3 5312
5 TraesCS7B01G190300 chr7A 192667256 192672886 5630 True 2751.000000 6161 94.618333 781 6001 3 chr7A.!!$R5 5220
6 TraesCS7B01G190300 chr7A 192817649 192818404 755 True 1077.000000 1077 92.298000 1070 1833 1 chr7A.!!$R1 763
7 TraesCS7B01G190300 chr7A 93072640 93077485 4845 False 781.833333 1884 85.004833 902 6214 6 chr7A.!!$F2 5312
8 TraesCS7B01G190300 chr5B 502476745 502477567 822 False 589.000000 987 91.588500 1 795 2 chr5B.!!$F2 794
9 TraesCS7B01G190300 chr1B 453116921 453117568 647 True 965.000000 965 93.519000 1 648 1 chr1B.!!$R3 647
10 TraesCS7B01G190300 chr1B 332763556 332764205 649 True 931.000000 931 92.615000 1 647 1 chr1B.!!$R2 646
11 TraesCS7B01G190300 chr1B 354581635 354582280 645 False 922.000000 922 92.427000 1 647 1 chr1B.!!$F2 646
12 TraesCS7B01G190300 chr1B 456430974 456431780 806 True 917.000000 917 87.748000 1 779 1 chr1B.!!$R5 778
13 TraesCS7B01G190300 chr1B 90268439 90269086 647 True 865.000000 865 90.769000 1 648 1 chr1B.!!$R1 647
14 TraesCS7B01G190300 chr4A 439067894 439068900 1006 True 458.666667 922 90.471333 3046 4399 3 chr4A.!!$R2 1353
15 TraesCS7B01G190300 chr3B 529408499 529409308 809 True 874.000000 874 86.797000 1 785 1 chr3B.!!$R1 784
16 TraesCS7B01G190300 chr2B 454347681 454348327 646 True 867.000000 867 90.909000 1 646 1 chr2B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 547 0.178861 ACTTGGGTGTGGGAGAGGAT 60.179 55.000 0.00 0.0 0.00 3.24 F
1084 1160 0.838122 CTCCCTCCACCTCCAACAGT 60.838 60.000 0.00 0.0 0.00 3.55 F
2096 2369 1.003866 GCCGTAGCATCGTCCAAATTC 60.004 52.381 0.00 0.0 39.53 2.17 F
2935 3852 1.133513 AGTGGTGGATTGGCAACTCAA 60.134 47.619 0.00 0.0 37.61 3.02 F
3176 4093 1.276421 ACCCCGTGACAATCTTCTGAG 59.724 52.381 0.00 0.0 0.00 3.35 F
3978 4960 3.694072 TCACAATGCTATTGTAGGTTGCC 59.306 43.478 12.24 0.0 0.00 4.52 F
4576 5595 1.071228 GACTCCAGTTTACCACCCGTT 59.929 52.381 0.00 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1541 1.335872 CGGTGAAAAAGGCAAAGCGAT 60.336 47.619 0.00 0.00 33.87 4.58 R
2256 2828 2.596452 ACAGAATTGTCGCGACTACAG 58.404 47.619 36.27 23.18 29.46 2.74 R
3240 4157 0.530431 CACCAAGGGTTGCTGCAAAC 60.530 55.000 21.74 21.74 31.02 2.93 R
3978 4960 0.531532 ATTGCTTCAGGAGATCGCCG 60.532 55.000 10.07 5.49 0.00 6.46 R
4017 4999 0.962489 AGGTGACTGAGAGTGTTCCG 59.038 55.000 0.00 0.00 41.13 4.30 R
5141 6193 1.081641 GAAGGCGTCGACGAGTTCA 60.082 57.895 39.74 0.00 43.02 3.18 R
5744 6833 1.546476 CGTGGTCTCTTTCCAGCTACT 59.454 52.381 0.00 0.00 35.49 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 4.261801 ACCCTCGTCCATGTTCATTTAAG 58.738 43.478 0.00 0.00 0.00 1.85
105 107 2.416296 CCATGTCGCTGAACTACGGTTA 60.416 50.000 0.00 0.00 35.58 2.85
139 141 1.200716 CTACAGTTGCCATGGTTGCTG 59.799 52.381 21.59 21.59 0.00 4.41
151 153 0.740737 GGTTGCTGAACTGCAGTTGT 59.259 50.000 35.67 14.49 46.62 3.32
221 223 4.161754 GGAGTTGCCACCTACTAACACTAT 59.838 45.833 0.00 0.00 36.34 2.12
226 228 3.458189 CCACCTACTAACACTATGCAGC 58.542 50.000 0.00 0.00 0.00 5.25
320 322 1.247567 GTGCACACTAGGGCATTTGT 58.752 50.000 13.17 0.00 42.75 2.83
378 380 4.500499 AAGAGAGTTGCCATCTGCTTAT 57.500 40.909 0.00 0.00 42.00 1.73
517 528 4.142293 TGCAAAACACATGACAACTAGCAA 60.142 37.500 0.00 0.00 0.00 3.91
536 547 0.178861 ACTTGGGTGTGGGAGAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
538 549 2.293856 ACTTGGGTGTGGGAGAGGATAT 60.294 50.000 0.00 0.00 0.00 1.63
575 587 1.445095 GCAAATGCCCACACACCAA 59.555 52.632 0.00 0.00 34.31 3.67
624 637 3.702555 GCGAACTGCTGAACGCGT 61.703 61.111 5.58 5.58 43.27 6.01
625 638 2.168621 CGAACTGCTGAACGCGTG 59.831 61.111 14.98 0.24 43.27 5.34
718 759 2.108157 TGCGCTCACAAACGGACT 59.892 55.556 9.73 0.00 0.00 3.85
724 765 1.939838 GCTCACAAACGGACTCGGATT 60.940 52.381 0.00 0.00 41.39 3.01
774 815 0.877213 ACGTGTGGGCGTTAGTGTTC 60.877 55.000 0.00 0.00 43.04 3.18
816 857 3.189080 TCAGCGTCCACAAATTTGATGAG 59.811 43.478 24.64 11.88 0.00 2.90
845 890 1.761198 CTTTACTCGTAGGGAAGGGGG 59.239 57.143 0.00 0.00 0.00 5.40
849 894 2.253403 CTCGTAGGGAAGGGGGTTGC 62.253 65.000 0.00 0.00 0.00 4.17
923 969 4.546637 CGTCCTAACGCAACGTCT 57.453 55.556 0.00 0.00 42.82 4.18
1079 1155 2.780693 CCTCTCCCTCCACCTCCA 59.219 66.667 0.00 0.00 0.00 3.86
1084 1160 0.838122 CTCCCTCCACCTCCAACAGT 60.838 60.000 0.00 0.00 0.00 3.55
1129 1205 2.689691 GCTAATGCCCTGGTCCCCA 61.690 63.158 0.00 0.00 0.00 4.96
1307 1383 3.826754 CCACCGCGAGCTCTGCTA 61.827 66.667 22.08 0.00 39.88 3.49
1464 1540 2.366266 ACAGTACAGGTTGGTTCGCTTA 59.634 45.455 0.00 0.00 0.00 3.09
1465 1541 3.181463 ACAGTACAGGTTGGTTCGCTTAA 60.181 43.478 0.00 0.00 0.00 1.85
1468 1544 2.073816 ACAGGTTGGTTCGCTTAATCG 58.926 47.619 0.00 0.00 0.00 3.34
1469 1545 1.084289 AGGTTGGTTCGCTTAATCGC 58.916 50.000 0.00 0.00 0.00 4.58
1503 1579 1.049251 CGCGCGTTGCAGTTAATTTT 58.951 45.000 24.19 0.00 46.97 1.82
1795 2043 7.984422 AACACAAATCATACTGATCTTGACA 57.016 32.000 13.77 0.00 35.76 3.58
1821 2072 4.202264 ACTGATTATCCCATTCACGAGGAC 60.202 45.833 0.00 0.00 30.97 3.85
1863 2115 3.431673 TGTGATTTATGAGTGTGGGCA 57.568 42.857 0.00 0.00 0.00 5.36
2096 2369 1.003866 GCCGTAGCATCGTCCAAATTC 60.004 52.381 0.00 0.00 39.53 2.17
2256 2828 7.816995 TGTCAAGCATTTTATGTACCCATTTTC 59.183 33.333 0.00 0.00 32.29 2.29
2321 2893 4.202357 GGGTATACATGCATCTGGAGTTCA 60.202 45.833 5.01 0.00 0.00 3.18
2736 3650 9.255304 GGTACTTTGATTGATTTGCAGTTTAAA 57.745 29.630 0.00 0.00 0.00 1.52
2752 3666 7.232534 TGCAGTTTAAATGTCTATTGGGACTTT 59.767 33.333 0.00 0.00 37.16 2.66
2935 3852 1.133513 AGTGGTGGATTGGCAACTCAA 60.134 47.619 0.00 0.00 37.61 3.02
3176 4093 1.276421 ACCCCGTGACAATCTTCTGAG 59.724 52.381 0.00 0.00 0.00 3.35
3240 4157 6.405842 GCAGTCTCCCCACAATTAATAAAAGG 60.406 42.308 0.00 0.00 0.00 3.11
3790 4740 6.893005 ACTGATAGTTGAAAGGCTAGTACTCT 59.107 38.462 0.00 0.00 0.00 3.24
3978 4960 3.694072 TCACAATGCTATTGTAGGTTGCC 59.306 43.478 12.24 0.00 0.00 4.52
4017 4999 6.539826 AGCAATATCAGCAAAAATTTAAGGGC 59.460 34.615 0.00 0.00 0.00 5.19
4199 5185 9.717942 AATATCAGTAGCAATTGGATAGAAGTC 57.282 33.333 7.72 0.00 0.00 3.01
4233 5223 5.957771 TGCATAAACCCTCTTCTCAGTAT 57.042 39.130 0.00 0.00 0.00 2.12
4544 5563 2.835475 CGAAAGCATTGAAAAACCGC 57.165 45.000 0.00 0.00 0.00 5.68
4576 5595 1.071228 GACTCCAGTTTACCACCCGTT 59.929 52.381 0.00 0.00 0.00 4.44
4682 5722 4.516652 ACTTATGGTACCGAGGACTACT 57.483 45.455 7.57 0.00 0.00 2.57
4802 5842 6.287589 TGTTGTGTTTGTAACCCTTTTGAT 57.712 33.333 0.00 0.00 0.00 2.57
5008 6048 3.010027 TCTGCTTGTCATCAACCCCATAA 59.990 43.478 0.00 0.00 0.00 1.90
5141 6193 0.179045 AAGTGAGGCTTGTTGCTCGT 60.179 50.000 0.00 0.00 42.39 4.18
5270 6322 6.664428 AACAAACAAACAACATAGGCCTAT 57.336 33.333 20.16 20.16 0.00 2.57
5558 6645 3.971245 TTTTTGTCAGGCTGTGGTTTT 57.029 38.095 15.27 0.00 0.00 2.43
5560 6647 1.110442 TTGTCAGGCTGTGGTTTTGG 58.890 50.000 15.27 0.00 0.00 3.28
5561 6648 1.363807 GTCAGGCTGTGGTTTTGGC 59.636 57.895 15.27 0.00 0.00 4.52
5562 6649 1.076412 TCAGGCTGTGGTTTTGGCA 60.076 52.632 15.27 0.00 0.00 4.92
5563 6650 1.108727 TCAGGCTGTGGTTTTGGCAG 61.109 55.000 15.27 0.00 0.00 4.85
5567 6654 2.976271 CTGTGGTTTTGGCAGCAAC 58.024 52.632 0.00 3.62 0.00 4.17
5568 6655 0.175302 CTGTGGTTTTGGCAGCAACA 59.825 50.000 12.19 5.28 0.00 3.33
5569 6656 0.108424 TGTGGTTTTGGCAGCAACAC 60.108 50.000 8.77 8.77 0.00 3.32
5586 6674 4.554723 GCAACACTGAATAAAGCTTGTCGT 60.555 41.667 0.00 0.00 0.00 4.34
5607 6696 5.526479 TCGTACGTGAGAATTCTGTAGCTAT 59.474 40.000 14.00 0.00 0.00 2.97
5634 6723 4.887748 TCTGATGAATAATCTCCCTTCGC 58.112 43.478 0.00 0.00 36.15 4.70
5640 6729 0.102481 TAATCTCCCTTCGCTCACGC 59.898 55.000 0.00 0.00 39.84 5.34
5667 6756 9.317936 GATAAATATGATGATGTGGCTAATCGA 57.682 33.333 0.00 0.00 0.00 3.59
5744 6833 6.552629 TGAACGTTAACAGTACATTTTTGCA 58.447 32.000 0.00 0.00 0.00 4.08
5969 7058 5.627182 ACTGGAGCTATTGACAGATCATT 57.373 39.130 0.00 0.00 33.85 2.57
5970 7059 6.737720 ACTGGAGCTATTGACAGATCATTA 57.262 37.500 0.00 0.00 33.85 1.90
5971 7060 7.129457 ACTGGAGCTATTGACAGATCATTAA 57.871 36.000 0.00 0.00 33.85 1.40
5972 7061 7.743749 ACTGGAGCTATTGACAGATCATTAAT 58.256 34.615 0.00 0.00 33.85 1.40
5973 7062 7.660617 ACTGGAGCTATTGACAGATCATTAATG 59.339 37.037 9.29 9.29 33.85 1.90
5974 7063 6.429078 TGGAGCTATTGACAGATCATTAATGC 59.571 38.462 10.76 0.00 33.85 3.56
5975 7064 6.429078 GGAGCTATTGACAGATCATTAATGCA 59.571 38.462 10.76 0.00 33.85 3.96
5976 7065 7.120873 GGAGCTATTGACAGATCATTAATGCAT 59.879 37.037 10.76 0.00 33.85 3.96
5977 7066 8.041829 AGCTATTGACAGATCATTAATGCATC 57.958 34.615 10.76 13.31 33.85 3.91
5978 7067 7.120873 AGCTATTGACAGATCATTAATGCATCC 59.879 37.037 10.76 0.16 33.85 3.51
5979 7068 7.120873 GCTATTGACAGATCATTAATGCATCCT 59.879 37.037 10.76 2.36 33.85 3.24
5980 7069 9.662947 CTATTGACAGATCATTAATGCATCCTA 57.337 33.333 10.76 0.00 33.85 2.94
5981 7070 7.734924 TTGACAGATCATTAATGCATCCTAC 57.265 36.000 10.76 8.71 33.85 3.18
5982 7071 6.233434 TGACAGATCATTAATGCATCCTACC 58.767 40.000 10.76 5.77 0.00 3.18
5983 7072 6.043590 TGACAGATCATTAATGCATCCTACCT 59.956 38.462 10.76 0.00 0.00 3.08
5984 7073 6.471146 ACAGATCATTAATGCATCCTACCTC 58.529 40.000 10.76 0.00 0.00 3.85
5985 7074 5.879223 CAGATCATTAATGCATCCTACCTCC 59.121 44.000 10.76 0.00 0.00 4.30
5986 7075 5.549228 AGATCATTAATGCATCCTACCTCCA 59.451 40.000 10.76 0.00 0.00 3.86
5987 7076 5.233083 TCATTAATGCATCCTACCTCCAG 57.767 43.478 10.76 0.00 0.00 3.86
5988 7077 4.660303 TCATTAATGCATCCTACCTCCAGT 59.340 41.667 10.76 0.00 0.00 4.00
5989 7078 5.132648 TCATTAATGCATCCTACCTCCAGTT 59.867 40.000 10.76 0.00 0.00 3.16
5990 7079 3.567478 AATGCATCCTACCTCCAGTTC 57.433 47.619 0.00 0.00 0.00 3.01
5991 7080 2.254152 TGCATCCTACCTCCAGTTCT 57.746 50.000 0.00 0.00 0.00 3.01
5992 7081 2.111384 TGCATCCTACCTCCAGTTCTC 58.889 52.381 0.00 0.00 0.00 2.87
5993 7082 2.292521 TGCATCCTACCTCCAGTTCTCT 60.293 50.000 0.00 0.00 0.00 3.10
5994 7083 2.769095 GCATCCTACCTCCAGTTCTCTT 59.231 50.000 0.00 0.00 0.00 2.85
5995 7084 3.431486 GCATCCTACCTCCAGTTCTCTTG 60.431 52.174 0.00 0.00 0.00 3.02
5996 7085 3.544698 TCCTACCTCCAGTTCTCTTGT 57.455 47.619 0.00 0.00 0.00 3.16
5997 7086 3.858135 TCCTACCTCCAGTTCTCTTGTT 58.142 45.455 0.00 0.00 0.00 2.83
5998 7087 3.833070 TCCTACCTCCAGTTCTCTTGTTC 59.167 47.826 0.00 0.00 0.00 3.18
5999 7088 2.821991 ACCTCCAGTTCTCTTGTTCG 57.178 50.000 0.00 0.00 0.00 3.95
6000 7089 2.317040 ACCTCCAGTTCTCTTGTTCGA 58.683 47.619 0.00 0.00 0.00 3.71
6001 7090 2.297597 ACCTCCAGTTCTCTTGTTCGAG 59.702 50.000 0.00 0.00 0.00 4.04
6002 7091 2.297597 CCTCCAGTTCTCTTGTTCGAGT 59.702 50.000 0.00 0.00 32.83 4.18
6003 7092 3.570559 CTCCAGTTCTCTTGTTCGAGTC 58.429 50.000 0.00 0.00 32.83 3.36
6004 7093 2.956333 TCCAGTTCTCTTGTTCGAGTCA 59.044 45.455 0.00 0.00 32.83 3.41
6005 7094 3.574396 TCCAGTTCTCTTGTTCGAGTCAT 59.426 43.478 0.00 0.00 32.83 3.06
6035 7124 2.487986 CCAGCCTCCAGTTCTCTTGTTT 60.488 50.000 0.00 0.00 0.00 2.83
6061 7157 6.551736 ACGGCACACATAAATCATAAAGAAC 58.448 36.000 0.00 0.00 0.00 3.01
6164 7262 7.307694 TCTTTTCAATCTGAATCCGAAACATG 58.692 34.615 0.00 0.00 36.11 3.21
6209 7307 6.950842 TCCTATTCATTGACATGTCAGTCTT 58.049 36.000 26.48 14.87 41.13 3.01
6214 7312 7.601073 TTCATTGACATGTCAGTCTTATCAC 57.399 36.000 26.48 0.00 41.13 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 2.126734 GCGACATGGCAACTGCAC 60.127 61.111 0.00 0.00 44.36 4.57
105 107 1.968493 ACTGTAGTTGTCCGACATGGT 59.032 47.619 1.09 0.00 39.52 3.55
139 141 6.018425 CAGACCATATATGACAACTGCAGTTC 60.018 42.308 28.97 19.42 35.83 3.01
151 153 5.393866 TGCAGTAGACCAGACCATATATGA 58.606 41.667 14.54 0.00 0.00 2.15
221 223 1.043022 TGACAACTCTCTCAGCTGCA 58.957 50.000 9.47 0.00 0.00 4.41
226 228 3.252400 GAGCACATGACAACTCTCTCAG 58.748 50.000 0.00 0.00 0.00 3.35
320 322 5.695363 CCATGTGTTTTTGCATTGTACATGA 59.305 36.000 22.40 5.25 43.86 3.07
378 380 0.597568 GCAACTGCCTAATGTGCACA 59.402 50.000 24.08 24.08 34.46 4.57
517 528 0.178861 ATCCTCTCCCACACCCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
536 547 4.155733 CTCGCCCACACGCCCATA 62.156 66.667 0.00 0.00 0.00 2.74
575 587 0.470766 TTCCACTAACGCACAAGGGT 59.529 50.000 0.00 0.00 43.52 4.34
659 700 1.626356 GCCATGTAGGACTGGGCTGA 61.626 60.000 0.00 0.00 41.39 4.26
691 732 2.445274 GTGAGCGCACGAATCTTGA 58.555 52.632 11.47 0.00 34.94 3.02
785 826 8.920665 CAAATTTGTGGACGCTGAATAATAAAA 58.079 29.630 10.15 0.00 0.00 1.52
786 827 8.300286 TCAAATTTGTGGACGCTGAATAATAAA 58.700 29.630 17.47 0.00 0.00 1.40
787 828 7.821652 TCAAATTTGTGGACGCTGAATAATAA 58.178 30.769 17.47 0.00 0.00 1.40
788 829 7.384439 TCAAATTTGTGGACGCTGAATAATA 57.616 32.000 17.47 0.00 0.00 0.98
789 830 6.266168 TCAAATTTGTGGACGCTGAATAAT 57.734 33.333 17.47 0.00 0.00 1.28
809 850 5.277297 CGAGTAAAGTGCACAAACTCATCAA 60.277 40.000 29.62 3.56 37.09 2.57
816 857 3.185797 CCCTACGAGTAAAGTGCACAAAC 59.814 47.826 21.04 13.44 0.00 2.93
845 890 0.541764 TTCCACCCCAATCTGGCAAC 60.542 55.000 0.00 0.00 35.79 4.17
849 894 0.704076 TTCCTTCCACCCCAATCTGG 59.296 55.000 0.00 0.00 37.25 3.86
851 896 1.002857 CCTTCCTTCCACCCCAATCT 58.997 55.000 0.00 0.00 0.00 2.40
885 931 2.394563 GCTCTCGGACTTGCTTGGC 61.395 63.158 0.00 0.00 0.00 4.52
895 941 0.524862 GTTAGGACGTTGCTCTCGGA 59.475 55.000 0.00 0.00 0.00 4.55
923 969 1.301401 CGAAGCCGAGGTTGTTGGA 60.301 57.895 0.00 0.00 38.22 3.53
1008 1066 3.515286 TCGTCGGAGCGGGACATC 61.515 66.667 0.00 0.00 34.04 3.06
1079 1155 2.722201 GGCCGATCGGAGGACTGTT 61.722 63.158 37.64 0.00 37.50 3.16
1464 1540 2.754472 GGTGAAAAAGGCAAAGCGATT 58.246 42.857 0.00 0.00 0.00 3.34
1465 1541 1.335872 CGGTGAAAAAGGCAAAGCGAT 60.336 47.619 0.00 0.00 33.87 4.58
1468 1544 1.548132 CGCGGTGAAAAAGGCAAAGC 61.548 55.000 0.00 0.00 0.00 3.51
1469 1545 1.548132 GCGCGGTGAAAAAGGCAAAG 61.548 55.000 8.83 0.00 0.00 2.77
1795 2043 6.270000 TCCTCGTGAATGGGATAATCAGTATT 59.730 38.462 0.00 0.00 0.00 1.89
1821 2072 3.616956 TCACCATGCTCCAAGTTAGAG 57.383 47.619 0.00 0.00 0.00 2.43
1863 2115 6.491403 GGGCATTAAGTTATCAACAGATCCAT 59.509 38.462 0.00 0.00 0.00 3.41
2088 2361 2.625314 TCGCCACAACAATGAATTTGGA 59.375 40.909 0.00 0.00 39.80 3.53
2096 2369 3.558505 CTCTTCTTTCGCCACAACAATG 58.441 45.455 0.00 0.00 0.00 2.82
2256 2828 2.596452 ACAGAATTGTCGCGACTACAG 58.404 47.619 36.27 23.18 29.46 2.74
2321 2893 5.010617 GGTTGTATGAAATGAACCACCAACT 59.989 40.000 0.00 0.00 39.01 3.16
2397 2976 9.613428 TCATCAAAGAAAATAATCCGACATACT 57.387 29.630 0.00 0.00 0.00 2.12
2475 3388 5.533528 ACAAGGAAAAGGTAGCACGTAAAAT 59.466 36.000 0.00 0.00 0.00 1.82
2630 3543 3.138884 TCTGTCATAGCAAAACAGCCA 57.861 42.857 0.00 0.00 40.15 4.75
2736 3650 4.832266 TGTTGCAAAAGTCCCAATAGACAT 59.168 37.500 0.00 0.00 39.34 3.06
2752 3666 3.275617 ACAGTGTTCTAGGTGTTGCAA 57.724 42.857 0.00 0.00 0.00 4.08
2935 3852 5.352569 CAGTAGCGAATTTTCCATGAAGAGT 59.647 40.000 0.00 0.00 0.00 3.24
3176 4093 1.723870 GCCACATCACCGAATCTGC 59.276 57.895 0.00 0.00 0.00 4.26
3240 4157 0.530431 CACCAAGGGTTGCTGCAAAC 60.530 55.000 21.74 21.74 31.02 2.93
3750 4667 0.994247 TCAGTGAACCTGCCCATCAT 59.006 50.000 0.00 0.00 41.25 2.45
3978 4960 0.531532 ATTGCTTCAGGAGATCGCCG 60.532 55.000 10.07 5.49 0.00 6.46
4017 4999 0.962489 AGGTGACTGAGAGTGTTCCG 59.038 55.000 0.00 0.00 41.13 4.30
4233 5223 6.017852 CACTATGCAGTAGTCTAGATGTTCGA 60.018 42.308 0.00 0.00 41.73 3.71
4454 5462 9.332502 TCTTACTAGCAAAACTAATGTGTCAAA 57.667 29.630 0.00 0.00 0.00 2.69
4576 5595 5.657745 ACCCAAGCACAAATAATCATGATCA 59.342 36.000 9.06 0.00 0.00 2.92
4788 5828 7.726291 TCACTGGATAAAATCAAAAGGGTTACA 59.274 33.333 0.00 0.00 0.00 2.41
4802 5842 5.353123 GTCGCATTAACCTCACTGGATAAAA 59.647 40.000 0.00 0.00 36.78 1.52
5008 6048 6.594788 AGGACTGACATTGCAATTTTGTAT 57.405 33.333 9.83 0.00 0.00 2.29
5141 6193 1.081641 GAAGGCGTCGACGAGTTCA 60.082 57.895 39.74 0.00 43.02 3.18
5270 6322 3.711190 TCTGGGCTTGCAGTAGAATATGA 59.289 43.478 0.00 0.00 0.00 2.15
5336 6388 3.813166 TCTAAGACAAGCTTTTTGGGACG 59.187 43.478 0.00 0.00 38.05 4.79
5554 6641 2.292103 TTCAGTGTTGCTGCCAAAAC 57.708 45.000 0.00 0.00 44.66 2.43
5558 6645 2.030007 GCTTTATTCAGTGTTGCTGCCA 60.030 45.455 0.00 0.00 44.66 4.92
5560 6647 3.565905 AGCTTTATTCAGTGTTGCTGC 57.434 42.857 0.00 0.00 44.66 5.25
5561 6648 4.863491 ACAAGCTTTATTCAGTGTTGCTG 58.137 39.130 0.00 0.00 46.34 4.41
5562 6649 4.319766 CGACAAGCTTTATTCAGTGTTGCT 60.320 41.667 0.00 0.00 0.00 3.91
5563 6650 3.908382 CGACAAGCTTTATTCAGTGTTGC 59.092 43.478 0.00 0.00 0.00 4.17
5564 6651 5.095691 ACGACAAGCTTTATTCAGTGTTG 57.904 39.130 0.00 0.00 0.00 3.33
5566 6653 4.384846 CGTACGACAAGCTTTATTCAGTGT 59.615 41.667 10.44 0.00 0.00 3.55
5567 6654 4.384846 ACGTACGACAAGCTTTATTCAGTG 59.615 41.667 24.41 0.00 0.00 3.66
5568 6655 4.384846 CACGTACGACAAGCTTTATTCAGT 59.615 41.667 24.41 0.00 0.00 3.41
5569 6656 4.619760 TCACGTACGACAAGCTTTATTCAG 59.380 41.667 24.41 0.00 0.00 3.02
5581 6669 3.909776 ACAGAATTCTCACGTACGACA 57.090 42.857 24.41 6.50 0.00 4.35
5634 6723 6.454715 CCACATCATCATATTTATCGCGTGAG 60.455 42.308 5.77 0.00 0.00 3.51
5640 6729 8.271487 CGATTAGCCACATCATCATATTTATCG 58.729 37.037 0.00 0.00 0.00 2.92
5643 6732 9.671279 AATCGATTAGCCACATCATCATATTTA 57.329 29.630 9.39 0.00 0.00 1.40
5647 6736 5.876460 CCAATCGATTAGCCACATCATCATA 59.124 40.000 10.97 0.00 0.00 2.15
5667 6756 4.018141 TCCCTGATGATGTTCTCAACCAAT 60.018 41.667 0.00 0.00 37.44 3.16
5725 6814 7.323656 CAGCTACTGCAAAAATGTACTGTTAAC 59.676 37.037 0.00 0.00 42.74 2.01
5726 6815 7.359595 CAGCTACTGCAAAAATGTACTGTTAA 58.640 34.615 0.00 0.00 42.74 2.01
5744 6833 1.546476 CGTGGTCTCTTTCCAGCTACT 59.454 52.381 0.00 0.00 35.49 2.57
5911 7000 9.159254 TCTGGGTTATAGTTCATCAGTTATCAT 57.841 33.333 0.00 0.00 0.00 2.45
5969 7058 4.298626 AGAACTGGAGGTAGGATGCATTA 58.701 43.478 0.00 0.00 0.00 1.90
5970 7059 3.118531 AGAACTGGAGGTAGGATGCATT 58.881 45.455 0.00 0.00 0.00 3.56
5971 7060 2.703007 GAGAACTGGAGGTAGGATGCAT 59.297 50.000 0.00 0.00 0.00 3.96
5972 7061 2.111384 GAGAACTGGAGGTAGGATGCA 58.889 52.381 0.00 0.00 0.00 3.96
5973 7062 2.393646 AGAGAACTGGAGGTAGGATGC 58.606 52.381 0.00 0.00 0.00 3.91
5974 7063 3.772025 ACAAGAGAACTGGAGGTAGGATG 59.228 47.826 0.00 0.00 0.00 3.51
5975 7064 4.067944 ACAAGAGAACTGGAGGTAGGAT 57.932 45.455 0.00 0.00 0.00 3.24
5976 7065 3.544698 ACAAGAGAACTGGAGGTAGGA 57.455 47.619 0.00 0.00 0.00 2.94
5977 7066 3.367498 CGAACAAGAGAACTGGAGGTAGG 60.367 52.174 0.00 0.00 0.00 3.18
5978 7067 3.506455 TCGAACAAGAGAACTGGAGGTAG 59.494 47.826 0.00 0.00 0.00 3.18
5979 7068 3.493334 TCGAACAAGAGAACTGGAGGTA 58.507 45.455 0.00 0.00 0.00 3.08
5980 7069 2.297597 CTCGAACAAGAGAACTGGAGGT 59.702 50.000 0.00 0.00 40.57 3.85
5981 7070 2.297597 ACTCGAACAAGAGAACTGGAGG 59.702 50.000 0.62 0.00 40.57 4.30
5982 7071 3.004839 TGACTCGAACAAGAGAACTGGAG 59.995 47.826 0.62 0.00 40.57 3.86
5983 7072 2.956333 TGACTCGAACAAGAGAACTGGA 59.044 45.455 0.62 0.00 40.57 3.86
5984 7073 3.371102 TGACTCGAACAAGAGAACTGG 57.629 47.619 0.62 0.00 40.57 4.00
5985 7074 7.451429 CATTAATGACTCGAACAAGAGAACTG 58.549 38.462 10.04 0.00 40.57 3.16
5986 7075 6.091441 GCATTAATGACTCGAACAAGAGAACT 59.909 38.462 19.73 0.00 40.57 3.01
5987 7076 6.128553 TGCATTAATGACTCGAACAAGAGAAC 60.129 38.462 19.73 0.00 40.57 3.01
5988 7077 5.931724 TGCATTAATGACTCGAACAAGAGAA 59.068 36.000 19.73 0.00 40.57 2.87
5989 7078 5.478407 TGCATTAATGACTCGAACAAGAGA 58.522 37.500 19.73 0.00 40.57 3.10
5990 7079 5.784750 TGCATTAATGACTCGAACAAGAG 57.215 39.130 19.73 0.00 43.56 2.85
5991 7080 5.294306 GGATGCATTAATGACTCGAACAAGA 59.706 40.000 19.73 0.00 0.00 3.02
5992 7081 5.065090 TGGATGCATTAATGACTCGAACAAG 59.935 40.000 19.73 0.00 0.00 3.16
5993 7082 4.940654 TGGATGCATTAATGACTCGAACAA 59.059 37.500 19.73 0.00 0.00 2.83
5994 7083 4.512484 TGGATGCATTAATGACTCGAACA 58.488 39.130 19.73 5.93 0.00 3.18
5995 7084 4.553547 GCTGGATGCATTAATGACTCGAAC 60.554 45.833 19.73 3.99 42.31 3.95
5996 7085 3.561310 GCTGGATGCATTAATGACTCGAA 59.439 43.478 19.73 5.81 42.31 3.71
5997 7086 3.133691 GCTGGATGCATTAATGACTCGA 58.866 45.455 19.73 10.16 42.31 4.04
5998 7087 2.225019 GGCTGGATGCATTAATGACTCG 59.775 50.000 19.73 4.45 45.15 4.18
5999 7088 3.484407 AGGCTGGATGCATTAATGACTC 58.516 45.455 19.73 13.17 45.15 3.36
6000 7089 3.484407 GAGGCTGGATGCATTAATGACT 58.516 45.455 19.73 4.80 45.15 3.41
6001 7090 2.555757 GGAGGCTGGATGCATTAATGAC 59.444 50.000 19.73 10.72 45.15 3.06
6002 7091 2.175284 TGGAGGCTGGATGCATTAATGA 59.825 45.455 19.73 4.96 45.15 2.57
6003 7092 2.557056 CTGGAGGCTGGATGCATTAATG 59.443 50.000 11.27 11.27 45.15 1.90
6004 7093 2.176364 ACTGGAGGCTGGATGCATTAAT 59.824 45.455 0.00 0.00 45.15 1.40
6005 7094 1.565759 ACTGGAGGCTGGATGCATTAA 59.434 47.619 0.00 0.00 45.15 1.40
6035 7124 5.877564 TCTTTATGATTTATGTGTGCCGTCA 59.122 36.000 0.00 0.00 0.00 4.35
6164 7262 2.769095 AGGGTTAGATCTTCCACTGCTC 59.231 50.000 0.00 0.00 0.00 4.26
6214 7312 8.986847 GGACACAGATACTCAATCAGATAATTG 58.013 37.037 0.00 0.00 37.03 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.