Multiple sequence alignment - TraesCS7B01G189100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G189100 chr7B 100.000 2400 0 0 1746 4145 322479860 322477461 0.000000e+00 4433.0
1 TraesCS7B01G189100 chr7B 100.000 1244 0 0 1 1244 322481605 322480362 0.000000e+00 2298.0
2 TraesCS7B01G189100 chr7B 86.813 91 3 4 720 801 63386636 63386726 4.410000e-15 93.5
3 TraesCS7B01G189100 chr7B 85.714 91 4 4 720 801 63381750 63381660 2.050000e-13 87.9
4 TraesCS7B01G189100 chr7D 97.322 2054 33 9 1746 3792 363046187 363044149 0.000000e+00 3469.0
5 TraesCS7B01G189100 chr7D 90.327 703 60 7 1 701 515031921 515031225 0.000000e+00 915.0
6 TraesCS7B01G189100 chr7D 93.319 464 10 2 802 1244 363046720 363046257 0.000000e+00 665.0
7 TraesCS7B01G189100 chr7D 90.057 352 10 7 3794 4145 363041656 363041330 2.290000e-117 433.0
8 TraesCS7B01G189100 chr7D 86.813 91 3 4 720 801 515031166 515031076 4.410000e-15 93.5
9 TraesCS7B01G189100 chr7A 98.184 1377 25 0 1746 3122 394831757 394833133 0.000000e+00 2405.0
10 TraesCS7B01G189100 chr7A 92.646 1047 32 20 3110 4145 394833234 394834246 0.000000e+00 1465.0
11 TraesCS7B01G189100 chr7A 89.331 703 71 3 1 701 8677331 8676631 0.000000e+00 880.0
12 TraesCS7B01G189100 chr7A 88.494 478 20 14 802 1244 394831025 394831502 2.820000e-151 545.0
13 TraesCS7B01G189100 chr2D 91.738 702 56 2 1 701 68618031 68618731 0.000000e+00 974.0
14 TraesCS7B01G189100 chr2D 91.607 703 56 3 1 701 68580861 68581562 0.000000e+00 968.0
15 TraesCS7B01G189100 chr2D 91.441 701 58 2 1 701 68558733 68559431 0.000000e+00 961.0
16 TraesCS7B01G189100 chr2D 87.778 90 2 2 721 801 68618791 68618880 3.410000e-16 97.1
17 TraesCS7B01G189100 chr2D 86.667 90 3 2 721 801 68559491 68559580 1.590000e-14 91.6
18 TraesCS7B01G189100 chr2D 85.556 90 3 3 721 801 68581622 68581710 7.380000e-13 86.1
19 TraesCS7B01G189100 chr2D 97.500 40 1 0 719 758 68441939 68441900 7.440000e-08 69.4
20 TraesCS7B01G189100 chr5B 91.000 700 56 6 4 701 626656567 626657261 0.000000e+00 937.0
21 TraesCS7B01G189100 chr5B 87.074 704 84 6 1 701 457108433 457107734 0.000000e+00 789.0
22 TraesCS7B01G189100 chr5B 86.667 90 4 3 720 801 505275002 505275091 4.410000e-15 93.5
23 TraesCS7B01G189100 chr5B 82.418 91 7 4 720 801 457107675 457107585 2.070000e-08 71.3
24 TraesCS7B01G189100 chr1B 88.889 702 74 4 1 701 676948025 676948723 0.000000e+00 861.0
25 TraesCS7B01G189100 chr2B 88.636 704 70 9 1 701 66941042 66940346 0.000000e+00 848.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G189100 chr7B 322477461 322481605 4144 True 3365.500000 4433 100.0000 1 4145 2 chr7B.!!$R2 4144
1 TraesCS7B01G189100 chr7D 363041330 363046720 5390 True 1522.333333 3469 93.5660 802 4145 3 chr7D.!!$R1 3343
2 TraesCS7B01G189100 chr7D 515031076 515031921 845 True 504.250000 915 88.5700 1 801 2 chr7D.!!$R2 800
3 TraesCS7B01G189100 chr7A 394831025 394834246 3221 False 1471.666667 2405 93.1080 802 4145 3 chr7A.!!$F1 3343
4 TraesCS7B01G189100 chr7A 8676631 8677331 700 True 880.000000 880 89.3310 1 701 1 chr7A.!!$R1 700
5 TraesCS7B01G189100 chr2D 68618031 68618880 849 False 535.550000 974 89.7580 1 801 2 chr2D.!!$F3 800
6 TraesCS7B01G189100 chr2D 68580861 68581710 849 False 527.050000 968 88.5815 1 801 2 chr2D.!!$F2 800
7 TraesCS7B01G189100 chr2D 68558733 68559580 847 False 526.300000 961 89.0540 1 801 2 chr2D.!!$F1 800
8 TraesCS7B01G189100 chr5B 626656567 626657261 694 False 937.000000 937 91.0000 4 701 1 chr5B.!!$F2 697
9 TraesCS7B01G189100 chr5B 457107585 457108433 848 True 430.150000 789 84.7460 1 801 2 chr5B.!!$R1 800
10 TraesCS7B01G189100 chr1B 676948025 676948723 698 False 861.000000 861 88.8890 1 701 1 chr1B.!!$F1 700
11 TraesCS7B01G189100 chr2B 66940346 66941042 696 True 848.000000 848 88.6360 1 701 1 chr2B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 319 0.179045 CTAGTAAGGCAATGCGGGCT 60.179 55.0 0.0 0.0 46.88 5.19 F
1799 1896 0.109272 GCTCGTCGGTGTGAAGATGA 60.109 55.0 0.0 0.0 34.50 2.92 F
2188 2290 0.462759 CCATTCTTCTGAGGGGCGTC 60.463 60.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 2373 2.042686 TGTGCTCATTGGCCTGTATC 57.957 50.000 3.32 0.0 0.00 2.24 R
3078 3180 0.957395 CGTCAGGCATTGCACCTCTT 60.957 55.000 11.39 0.0 34.42 2.85 R
3977 6694 1.190763 GCATCGTTTTGCTGCAAACTG 59.809 47.619 25.99 20.2 39.51 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.034558 GCACGGCCATTAACATAAGCAT 59.965 45.455 2.24 0.00 0.00 3.79
119 120 7.771927 AGATTGATTTCCACAGAGAAATTGT 57.228 32.000 1.41 0.00 44.52 2.71
164 165 8.839343 CACCAACACATATACAACATACATCAT 58.161 33.333 0.00 0.00 0.00 2.45
236 237 2.171870 CCCTAAGCCCCAATTCTCGTAA 59.828 50.000 0.00 0.00 0.00 3.18
262 266 2.938428 ATCCCATGCCAAAACCCTAA 57.062 45.000 0.00 0.00 0.00 2.69
270 274 4.112634 TGCCAAAACCCTAACAGAATCT 57.887 40.909 0.00 0.00 0.00 2.40
281 285 5.186797 CCCTAACAGAATCTGGCCTATCTAG 59.813 48.000 15.38 0.00 35.51 2.43
315 319 0.179045 CTAGTAAGGCAATGCGGGCT 60.179 55.000 0.00 0.00 46.88 5.19
370 376 5.372547 AAAAGCGGGATTCTTCAGTTTAC 57.627 39.130 0.00 0.00 0.00 2.01
393 399 1.817447 GACTTACTGTACACGAGGGCT 59.183 52.381 0.00 0.00 0.00 5.19
428 434 1.351017 ACGATGAACAGGGGACATTGT 59.649 47.619 0.00 0.00 34.89 2.71
496 502 2.034879 CCACGCACGAAATCTGGCT 61.035 57.895 0.00 0.00 0.00 4.75
498 504 2.099062 CGCACGAAATCTGGCTGC 59.901 61.111 0.00 0.00 0.00 5.25
549 555 2.817834 GGCGTCGCCTATGCAACA 60.818 61.111 28.98 0.00 46.69 3.33
595 602 0.969149 ACATGCGAGTTGAGTGGAGA 59.031 50.000 0.00 0.00 0.00 3.71
653 662 4.613925 TTTTTGCATATTTCCACAGGCA 57.386 36.364 0.00 0.00 0.00 4.75
702 724 1.593209 GAGCGGTCAACACGTGGAA 60.593 57.895 21.57 1.15 0.00 3.53
754 803 5.060816 CCGTAACGAGCGTATTTCAAAGTTA 59.939 40.000 0.00 0.00 0.00 2.24
777 834 3.425625 GGTCATGCTTTCGACGCAATTAA 60.426 43.478 12.02 0.00 41.26 1.40
869 927 4.157607 AAGCACGGTTGGTTCAGG 57.842 55.556 0.00 0.00 39.27 3.86
885 961 3.435186 GGCAGAACCTGGAAGCGC 61.435 66.667 0.00 0.00 34.51 5.92
964 1061 3.316573 GAGTGTTGGGAGGCGGAGG 62.317 68.421 0.00 0.00 0.00 4.30
992 1089 1.362717 CAGGTGTTCGACGAGGTGT 59.637 57.895 0.00 0.00 0.00 4.16
1077 1174 1.876416 GCCACGTTCTTTACCAGCTCA 60.876 52.381 0.00 0.00 0.00 4.26
1117 1214 2.279069 CCTCCTGCGTCTGTGGAGT 61.279 63.158 7.38 0.00 44.21 3.85
1799 1896 0.109272 GCTCGTCGGTGTGAAGATGA 60.109 55.000 0.00 0.00 34.50 2.92
2188 2290 0.462759 CCATTCTTCTGAGGGGCGTC 60.463 60.000 0.00 0.00 0.00 5.19
2265 2367 5.512404 CCACACCTCAACCTACAACATCTTA 60.512 44.000 0.00 0.00 0.00 2.10
2271 2373 6.591834 CCTCAACCTACAACATCTTACTGAAG 59.408 42.308 0.00 0.00 0.00 3.02
2781 2883 3.240069 ACCGAATGCTATTACGTATCGC 58.760 45.455 0.00 0.04 0.00 4.58
3155 3370 6.478016 CAGTACAAGACATGATACTGTCCATG 59.522 42.308 16.57 16.57 45.41 3.66
3235 3457 1.159285 TGAGCCATTTCTTCTGCACG 58.841 50.000 0.00 0.00 0.00 5.34
3237 3459 0.890542 AGCCATTTCTTCTGCACGCA 60.891 50.000 0.00 0.00 0.00 5.24
3303 3525 4.811908 TGTGCACAATCCAATTGATGAAG 58.188 39.130 19.28 3.56 42.83 3.02
3304 3526 4.281435 TGTGCACAATCCAATTGATGAAGT 59.719 37.500 19.28 0.00 42.83 3.01
3305 3527 4.624024 GTGCACAATCCAATTGATGAAGTG 59.376 41.667 13.17 10.64 42.83 3.16
3306 3528 3.615496 GCACAATCCAATTGATGAAGTGC 59.385 43.478 19.53 19.53 43.72 4.40
3307 3529 4.811908 CACAATCCAATTGATGAAGTGCA 58.188 39.130 7.12 0.00 42.83 4.57
3309 3531 4.178540 CAATCCAATTGATGAAGTGCACC 58.821 43.478 14.63 0.00 42.83 5.01
3311 3533 3.499338 TCCAATTGATGAAGTGCACCTT 58.501 40.909 14.63 7.25 35.59 3.50
3312 3534 3.896888 TCCAATTGATGAAGTGCACCTTT 59.103 39.130 14.63 1.27 32.03 3.11
3313 3535 4.022068 TCCAATTGATGAAGTGCACCTTTC 60.022 41.667 14.63 12.46 32.03 2.62
3314 3536 4.021719 CCAATTGATGAAGTGCACCTTTCT 60.022 41.667 14.63 2.22 32.03 2.52
3331 3554 4.488879 CTTTCTTTTGGTATCCAAGCAGC 58.511 43.478 1.53 0.00 44.84 5.25
3345 3568 3.524541 CAAGCAGCTTGTCCAAAACTTT 58.475 40.909 24.89 0.00 36.79 2.66
3423 3646 3.321111 TCAGCTAGGTCAACGAGTCTTTT 59.679 43.478 0.00 0.00 0.00 2.27
3553 3777 1.564622 CAGTCGCTGGACAAACACG 59.435 57.895 0.00 0.00 45.92 4.49
3616 3841 6.137415 GCGAGACTAGATAGACATGTTACAC 58.863 44.000 0.00 0.00 0.00 2.90
3681 3906 5.483937 TCTCTATTGCTACTTTGTTCCCAGA 59.516 40.000 0.00 0.00 0.00 3.86
3742 3967 1.552337 TCCAGGAGCAGTCTGACATTC 59.448 52.381 10.88 4.35 34.36 2.67
3789 4014 3.823304 GGTTTGAGAAGCTGGTGAATTCT 59.177 43.478 7.05 0.00 36.02 2.40
3792 4017 6.404074 GGTTTGAGAAGCTGGTGAATTCTATG 60.404 42.308 7.05 0.00 33.53 2.23
3857 6572 4.702131 AGAACTGCCAATGGTGATACTTTC 59.298 41.667 0.00 0.00 0.00 2.62
3865 6580 2.531771 TGGTGATACTTTCGGACCTCA 58.468 47.619 0.00 0.00 0.00 3.86
3868 6583 1.475280 TGATACTTTCGGACCTCACGG 59.525 52.381 0.00 0.00 0.00 4.94
3976 6693 8.040132 TCTGTTCAAACAAATTTGGTCATCTTT 58.960 29.630 21.74 9.32 44.61 2.52
3977 6694 8.195617 TGTTCAAACAAATTTGGTCATCTTTC 57.804 30.769 21.74 4.84 44.61 2.62
3978 6695 7.821359 TGTTCAAACAAATTTGGTCATCTTTCA 59.179 29.630 21.74 7.09 44.61 2.69
3979 6696 8.330302 GTTCAAACAAATTTGGTCATCTTTCAG 58.670 33.333 21.74 2.84 44.61 3.02
3980 6697 7.555087 TCAAACAAATTTGGTCATCTTTCAGT 58.445 30.769 21.74 0.00 44.61 3.41
3981 6698 8.040132 TCAAACAAATTTGGTCATCTTTCAGTT 58.960 29.630 21.74 0.06 44.61 3.16
3982 6699 8.667463 CAAACAAATTTGGTCATCTTTCAGTTT 58.333 29.630 21.74 6.04 41.39 2.66
3983 6700 7.775397 ACAAATTTGGTCATCTTTCAGTTTG 57.225 32.000 21.74 0.00 0.00 2.93
3984 6701 6.258507 ACAAATTTGGTCATCTTTCAGTTTGC 59.741 34.615 21.74 0.00 0.00 3.68
3985 6702 4.998671 TTTGGTCATCTTTCAGTTTGCA 57.001 36.364 0.00 0.00 0.00 4.08
3986 6703 4.572985 TTGGTCATCTTTCAGTTTGCAG 57.427 40.909 0.00 0.00 0.00 4.41
3987 6704 2.294233 TGGTCATCTTTCAGTTTGCAGC 59.706 45.455 0.00 0.00 0.00 5.25
3988 6705 2.294233 GGTCATCTTTCAGTTTGCAGCA 59.706 45.455 0.00 0.00 0.00 4.41
3989 6706 3.243501 GGTCATCTTTCAGTTTGCAGCAA 60.244 43.478 2.83 2.83 0.00 3.91
3990 6707 4.362279 GTCATCTTTCAGTTTGCAGCAAA 58.638 39.130 16.93 16.93 0.00 3.68
3991 6708 4.805192 GTCATCTTTCAGTTTGCAGCAAAA 59.195 37.500 22.26 4.30 35.03 2.44
3992 6709 4.805192 TCATCTTTCAGTTTGCAGCAAAAC 59.195 37.500 22.26 15.49 39.80 2.43
3993 6710 3.178267 TCTTTCAGTTTGCAGCAAAACG 58.822 40.909 22.26 15.51 43.39 3.60
3994 6711 2.929531 TTCAGTTTGCAGCAAAACGA 57.070 40.000 22.26 17.46 43.39 3.85
3995 6712 3.435105 TTCAGTTTGCAGCAAAACGAT 57.565 38.095 22.26 6.26 43.39 3.73
3996 6713 2.730069 TCAGTTTGCAGCAAAACGATG 58.270 42.857 22.26 17.00 43.39 3.84
4069 6788 0.387929 CAATGTGCCCCATGAGATGC 59.612 55.000 0.00 0.00 32.82 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.104102 TCATGTGGAGAAGGTTACTTGGTT 59.896 41.667 0.00 0.00 36.97 3.67
62 63 0.541764 GTTGGGCATGGAAGGAACCA 60.542 55.000 0.00 0.00 44.41 3.67
95 96 7.771927 ACAATTTCTCTGTGGAAATCAATCT 57.228 32.000 10.05 0.00 42.77 2.40
119 120 2.048222 CTCAGGCCGTCGAAGCAA 60.048 61.111 10.54 0.00 0.00 3.91
164 165 5.068987 TCATGTGGAGATGTCATGTCGATTA 59.931 40.000 4.03 0.00 39.61 1.75
236 237 0.178879 TTTGGCATGGGATTTGGGGT 60.179 50.000 0.00 0.00 0.00 4.95
262 266 3.581101 TGCTAGATAGGCCAGATTCTGT 58.419 45.455 5.01 0.00 0.00 3.41
270 274 3.772572 TGTTGTAGTTGCTAGATAGGCCA 59.227 43.478 5.01 0.00 0.00 5.36
281 285 5.063564 GCCTTACTAGATGTGTTGTAGTTGC 59.936 44.000 0.00 0.00 0.00 4.17
315 319 5.423610 TGATGTTGAAAAACCCTCCTTTTCA 59.576 36.000 6.63 6.63 46.08 2.69
370 376 1.131883 CCTCGTGTACAGTAAGTCCCG 59.868 57.143 0.00 0.00 0.00 5.14
496 502 4.382320 GGTACAACGGAGGCGGCA 62.382 66.667 13.08 0.00 0.00 5.69
507 513 1.590525 GCGATCATCGGCGGTACAA 60.591 57.895 9.59 0.00 40.84 2.41
547 553 1.622312 GTCGTTAGAGAAAGGGGGTGT 59.378 52.381 0.00 0.00 0.00 4.16
549 555 0.893447 CGTCGTTAGAGAAAGGGGGT 59.107 55.000 0.00 0.00 0.00 4.95
595 602 0.189327 GCATCCCCCATTCATCCCTT 59.811 55.000 0.00 0.00 0.00 3.95
636 644 1.093972 CGTGCCTGTGGAAATATGCA 58.906 50.000 0.00 0.00 0.00 3.96
754 803 0.602638 TTGCGTCGAAAGCATGACCT 60.603 50.000 16.09 0.00 44.74 3.85
777 834 5.365619 GAGATAAATACACCCACGGTCATT 58.634 41.667 0.00 0.00 31.02 2.57
869 927 3.435186 GGCGCTTCCAGGTTCTGC 61.435 66.667 7.64 0.00 34.01 4.26
992 1089 0.885150 TGGCGTTAACATGGTTGCGA 60.885 50.000 6.39 0.00 0.00 5.10
1108 1205 0.611896 TCATCAGCGGACTCCACAGA 60.612 55.000 0.00 0.00 0.00 3.41
1799 1896 2.182516 AATCCCTCGGATCCTCTGTT 57.817 50.000 10.75 0.00 42.27 3.16
2188 2290 5.283457 AGGATTTTGGAGATAGTCTTCCG 57.717 43.478 0.00 0.00 0.00 4.30
2265 2367 3.683847 GCTCATTGGCCTGTATCTTCAGT 60.684 47.826 3.32 0.00 34.02 3.41
2271 2373 2.042686 TGTGCTCATTGGCCTGTATC 57.957 50.000 3.32 0.00 0.00 2.24
2763 2865 4.235360 AGTGGCGATACGTAATAGCATTC 58.765 43.478 17.71 9.78 37.90 2.67
2781 2883 1.004679 GCAACCCAATGCCAAGTGG 60.005 57.895 0.00 0.00 41.38 4.00
2854 2956 3.963129 TCACCTTCCTTGTGACAACTTT 58.037 40.909 0.00 0.00 37.80 2.66
3036 3138 4.725790 ATCTGGCTCATAAACTTTTGCC 57.274 40.909 0.00 0.00 40.62 4.52
3078 3180 0.957395 CGTCAGGCATTGCACCTCTT 60.957 55.000 11.39 0.00 34.42 2.85
3235 3457 4.563580 TCAAATGACGATTGAATGCATTGC 59.436 37.500 18.59 9.15 34.04 3.56
3303 3525 3.572255 TGGATACCAAAAGAAAGGTGCAC 59.428 43.478 8.80 8.80 38.87 4.57
3304 3526 3.838565 TGGATACCAAAAGAAAGGTGCA 58.161 40.909 0.00 0.00 38.87 4.57
3305 3527 4.809673 CTTGGATACCAAAAGAAAGGTGC 58.190 43.478 4.78 0.00 43.44 5.01
3306 3528 4.280677 TGCTTGGATACCAAAAGAAAGGTG 59.719 41.667 4.78 0.00 43.44 4.00
3307 3529 4.479158 TGCTTGGATACCAAAAGAAAGGT 58.521 39.130 4.78 0.00 43.44 3.50
3309 3531 4.219288 AGCTGCTTGGATACCAAAAGAAAG 59.781 41.667 0.00 5.65 43.44 2.62
3311 3533 3.766545 AGCTGCTTGGATACCAAAAGAA 58.233 40.909 0.00 0.00 43.44 2.52
3312 3534 3.439857 AGCTGCTTGGATACCAAAAGA 57.560 42.857 0.00 0.00 43.44 2.52
3313 3535 3.256631 ACAAGCTGCTTGGATACCAAAAG 59.743 43.478 36.97 14.95 43.44 2.27
3314 3536 3.230134 ACAAGCTGCTTGGATACCAAAA 58.770 40.909 36.97 0.00 43.44 2.44
3331 3554 5.261209 TGACCATGAAAGTTTTGGACAAG 57.739 39.130 12.37 0.00 33.38 3.16
3345 3568 5.943416 ACCAGTTTCGATATTTTGACCATGA 59.057 36.000 0.00 0.00 0.00 3.07
3553 3777 6.978080 TGCTGAGTTTGTAATTTTTCTTGGAC 59.022 34.615 0.00 0.00 0.00 4.02
3616 3841 7.268199 TGGGTAGTACAATATCTTCAGTACG 57.732 40.000 2.06 0.00 41.16 3.67
3681 3906 2.799017 TGCTCATTTTCTGACCAGCAT 58.201 42.857 0.00 0.00 30.19 3.79
3705 3930 6.130692 TCCTGGATATGCACATGAATACAT 57.869 37.500 0.00 0.00 37.19 2.29
3706 3931 5.554070 CTCCTGGATATGCACATGAATACA 58.446 41.667 0.00 0.00 0.00 2.29
3707 3932 4.394300 GCTCCTGGATATGCACATGAATAC 59.606 45.833 0.00 0.00 0.00 1.89
3708 3933 4.041938 TGCTCCTGGATATGCACATGAATA 59.958 41.667 0.00 0.00 0.00 1.75
3709 3934 3.181437 TGCTCCTGGATATGCACATGAAT 60.181 43.478 0.00 0.00 0.00 2.57
3710 3935 2.173143 TGCTCCTGGATATGCACATGAA 59.827 45.455 0.00 0.00 0.00 2.57
3789 4014 4.451096 GGTCAGCGTCAAAAAGAGTTCATA 59.549 41.667 0.00 0.00 0.00 2.15
3792 4017 2.031944 GGGTCAGCGTCAAAAAGAGTTC 60.032 50.000 0.00 0.00 0.00 3.01
3865 6580 9.168451 CACTAGAGTATATCACAGATATTCCGT 57.832 37.037 0.00 0.00 0.00 4.69
3976 6693 2.730069 CATCGTTTTGCTGCAAACTGA 58.270 42.857 25.99 24.10 32.79 3.41
3977 6694 1.190763 GCATCGTTTTGCTGCAAACTG 59.809 47.619 25.99 20.20 39.51 3.16
3978 6695 1.490621 GCATCGTTTTGCTGCAAACT 58.509 45.000 25.99 9.59 39.51 2.66
3986 6703 2.422276 AAGAACCAGCATCGTTTTGC 57.578 45.000 0.00 0.53 43.09 3.68
4054 6773 1.890979 CGAGCATCTCATGGGGCAC 60.891 63.158 0.00 0.00 0.00 5.01
4055 6774 2.065789 TCGAGCATCTCATGGGGCA 61.066 57.895 0.00 0.00 0.00 5.36
4069 6788 2.989840 CAGCTGTCCAGTTTTAGTCGAG 59.010 50.000 5.25 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.