Multiple sequence alignment - TraesCS7B01G188500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G188500 chr7B 100.000 3081 0 0 1 3081 320267021 320263941 0.000000e+00 5690
1 TraesCS7B01G188500 chr7B 87.443 1322 99 35 1405 2676 66321857 66323161 0.000000e+00 1459
2 TraesCS7B01G188500 chr7B 94.707 888 42 4 1408 2292 733294389 733293504 0.000000e+00 1375
3 TraesCS7B01G188500 chr7B 91.544 816 56 3 2266 3081 733270279 733269477 0.000000e+00 1112
4 TraesCS7B01G188500 chr3B 95.416 2465 71 13 644 3081 11908101 11910550 0.000000e+00 3888
5 TraesCS7B01G188500 chr3B 93.377 1676 88 10 1405 3079 725543909 725545562 0.000000e+00 2459
6 TraesCS7B01G188500 chr3B 89.437 1704 98 37 1405 3081 691485435 691487083 0.000000e+00 2074
7 TraesCS7B01G188500 chr3B 91.881 776 42 13 646 1407 725542960 725543728 0.000000e+00 1064
8 TraesCS7B01G188500 chr4B 96.328 2015 47 1 961 2948 119310174 119312188 0.000000e+00 3286
9 TraesCS7B01G188500 chr1B 94.473 1538 66 5 1545 3081 176794328 176792809 0.000000e+00 2351
10 TraesCS7B01G188500 chr1B 87.079 1246 88 35 1860 3081 61977957 61979153 0.000000e+00 1341
11 TraesCS7B01G188500 chr1B 95.762 755 32 0 646 1400 176803728 176802974 0.000000e+00 1218
12 TraesCS7B01G188500 chr6B 90.006 1701 105 39 1405 3081 114059061 114060720 0.000000e+00 2139
13 TraesCS7B01G188500 chr1D 89.161 1716 104 39 1408 3081 422849839 422848164 0.000000e+00 2063
14 TraesCS7B01G188500 chr3D 88.987 1707 128 35 1405 3081 155676799 155678475 0.000000e+00 2056
15 TraesCS7B01G188500 chr3D 88.197 771 72 11 646 1410 447609823 447609066 0.000000e+00 902
16 TraesCS7B01G188500 chr2D 88.406 1725 123 44 1405 3081 77210533 77212228 0.000000e+00 2006
17 TraesCS7B01G188500 chr2D 87.516 777 70 14 646 1407 77209587 77210351 0.000000e+00 872
18 TraesCS7B01G188500 chr2B 93.030 990 58 7 1408 2396 765113872 765112893 0.000000e+00 1435
19 TraesCS7B01G188500 chr2B 90.074 816 63 5 2266 3081 765112956 765112159 0.000000e+00 1042
20 TraesCS7B01G188500 chr6A 88.958 806 68 11 2279 3081 532334423 532333636 0.000000e+00 976
21 TraesCS7B01G188500 chr4A 89.193 768 66 10 646 1410 37984867 37984114 0.000000e+00 942
22 TraesCS7B01G188500 chr5B 87.802 828 62 16 2260 3081 659492180 659492974 0.000000e+00 933
23 TraesCS7B01G188500 chr2A 87.006 785 79 13 634 1411 751417387 751416619 0.000000e+00 863
24 TraesCS7B01G188500 chr2A 86.753 770 83 9 646 1410 184517048 184516293 0.000000e+00 839
25 TraesCS7B01G188500 chr2A 86.571 767 71 17 646 1407 202211690 202212429 0.000000e+00 817
26 TraesCS7B01G188500 chrUn 87.273 770 72 10 646 1410 112556593 112555845 0.000000e+00 856
27 TraesCS7B01G188500 chr1A 91.011 534 39 1 2548 3081 549441957 549442481 0.000000e+00 712
28 TraesCS7B01G188500 chr7D 87.407 405 19 17 271 661 365828606 365828992 1.310000e-118 436
29 TraesCS7B01G188500 chr7D 88.837 215 11 10 1 209 365828378 365828585 5.100000e-63 252
30 TraesCS7B01G188500 chr7A 89.083 229 11 8 1 229 403947691 403947905 3.910000e-69 272
31 TraesCS7B01G188500 chr7A 87.407 135 8 7 379 510 403947965 403948093 2.480000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G188500 chr7B 320263941 320267021 3080 True 5690.0 5690 100.000 1 3081 1 chr7B.!!$R1 3080
1 TraesCS7B01G188500 chr7B 66321857 66323161 1304 False 1459.0 1459 87.443 1405 2676 1 chr7B.!!$F1 1271
2 TraesCS7B01G188500 chr7B 733293504 733294389 885 True 1375.0 1375 94.707 1408 2292 1 chr7B.!!$R3 884
3 TraesCS7B01G188500 chr7B 733269477 733270279 802 True 1112.0 1112 91.544 2266 3081 1 chr7B.!!$R2 815
4 TraesCS7B01G188500 chr3B 11908101 11910550 2449 False 3888.0 3888 95.416 644 3081 1 chr3B.!!$F1 2437
5 TraesCS7B01G188500 chr3B 691485435 691487083 1648 False 2074.0 2074 89.437 1405 3081 1 chr3B.!!$F2 1676
6 TraesCS7B01G188500 chr3B 725542960 725545562 2602 False 1761.5 2459 92.629 646 3079 2 chr3B.!!$F3 2433
7 TraesCS7B01G188500 chr4B 119310174 119312188 2014 False 3286.0 3286 96.328 961 2948 1 chr4B.!!$F1 1987
8 TraesCS7B01G188500 chr1B 176792809 176794328 1519 True 2351.0 2351 94.473 1545 3081 1 chr1B.!!$R1 1536
9 TraesCS7B01G188500 chr1B 61977957 61979153 1196 False 1341.0 1341 87.079 1860 3081 1 chr1B.!!$F1 1221
10 TraesCS7B01G188500 chr1B 176802974 176803728 754 True 1218.0 1218 95.762 646 1400 1 chr1B.!!$R2 754
11 TraesCS7B01G188500 chr6B 114059061 114060720 1659 False 2139.0 2139 90.006 1405 3081 1 chr6B.!!$F1 1676
12 TraesCS7B01G188500 chr1D 422848164 422849839 1675 True 2063.0 2063 89.161 1408 3081 1 chr1D.!!$R1 1673
13 TraesCS7B01G188500 chr3D 155676799 155678475 1676 False 2056.0 2056 88.987 1405 3081 1 chr3D.!!$F1 1676
14 TraesCS7B01G188500 chr3D 447609066 447609823 757 True 902.0 902 88.197 646 1410 1 chr3D.!!$R1 764
15 TraesCS7B01G188500 chr2D 77209587 77212228 2641 False 1439.0 2006 87.961 646 3081 2 chr2D.!!$F1 2435
16 TraesCS7B01G188500 chr2B 765112159 765113872 1713 True 1238.5 1435 91.552 1408 3081 2 chr2B.!!$R1 1673
17 TraesCS7B01G188500 chr6A 532333636 532334423 787 True 976.0 976 88.958 2279 3081 1 chr6A.!!$R1 802
18 TraesCS7B01G188500 chr4A 37984114 37984867 753 True 942.0 942 89.193 646 1410 1 chr4A.!!$R1 764
19 TraesCS7B01G188500 chr5B 659492180 659492974 794 False 933.0 933 87.802 2260 3081 1 chr5B.!!$F1 821
20 TraesCS7B01G188500 chr2A 751416619 751417387 768 True 863.0 863 87.006 634 1411 1 chr2A.!!$R2 777
21 TraesCS7B01G188500 chr2A 184516293 184517048 755 True 839.0 839 86.753 646 1410 1 chr2A.!!$R1 764
22 TraesCS7B01G188500 chr2A 202211690 202212429 739 False 817.0 817 86.571 646 1407 1 chr2A.!!$F1 761
23 TraesCS7B01G188500 chrUn 112555845 112556593 748 True 856.0 856 87.273 646 1410 1 chrUn.!!$R1 764
24 TraesCS7B01G188500 chr1A 549441957 549442481 524 False 712.0 712 91.011 2548 3081 1 chr1A.!!$F1 533
25 TraesCS7B01G188500 chr7D 365828378 365828992 614 False 344.0 436 88.122 1 661 2 chr7D.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 376 0.032130 AAGAGACTCGAAGCGTGCAA 59.968 50.0 0.0 0.0 0.00 4.08 F
1029 1052 0.031449 GGAGCGATAGTGAGAGCACC 59.969 60.0 0.0 0.0 46.32 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 1940 1.068748 GTCATGCTGCTTTCCACACAG 60.069 52.381 0.00 0.0 34.48 3.66 R
2553 3058 1.679898 CGGCCAAGAAGAAGAGGGT 59.320 57.895 2.24 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 84 2.634815 AGCTAGCTACTAGTGCCGTA 57.365 50.000 17.69 0.00 36.53 4.02
101 103 3.060740 CGTAGTGCGACTCGTTTTCTTTT 60.061 43.478 0.00 0.00 44.77 2.27
103 105 3.195661 AGTGCGACTCGTTTTCTTTTCT 58.804 40.909 0.00 0.00 0.00 2.52
154 156 2.980233 GCAGTCAGCACCACCACC 60.980 66.667 0.00 0.00 44.79 4.61
155 157 2.510411 CAGTCAGCACCACCACCA 59.490 61.111 0.00 0.00 0.00 4.17
156 158 1.073722 CAGTCAGCACCACCACCAT 59.926 57.895 0.00 0.00 0.00 3.55
157 159 1.073722 AGTCAGCACCACCACCATG 59.926 57.895 0.00 0.00 0.00 3.66
158 160 2.282391 TCAGCACCACCACCATGC 60.282 61.111 0.00 0.00 39.74 4.06
159 161 2.598099 CAGCACCACCACCATGCA 60.598 61.111 0.00 0.00 41.97 3.96
160 162 1.980232 CAGCACCACCACCATGCAT 60.980 57.895 0.00 0.00 41.97 3.96
161 163 1.980232 AGCACCACCACCATGCATG 60.980 57.895 20.19 20.19 41.97 4.06
162 164 2.574929 CACCACCACCATGCATGC 59.425 61.111 21.69 11.82 0.00 4.06
163 165 2.117858 ACCACCACCATGCATGCA 59.882 55.556 25.04 25.04 0.00 3.96
164 166 1.305465 ACCACCACCATGCATGCAT 60.305 52.632 27.46 27.46 37.08 3.96
183 185 4.371855 CATGCATGCATATTGGAGGATC 57.628 45.455 31.73 0.00 34.91 3.36
184 186 3.801307 TGCATGCATATTGGAGGATCT 57.199 42.857 18.46 0.00 33.73 2.75
185 187 3.682696 TGCATGCATATTGGAGGATCTC 58.317 45.455 18.46 0.00 33.73 2.75
186 188 4.870923 ATGCATGCATATTGGAGGATCTCC 60.871 45.833 31.35 6.99 41.77 3.71
187 189 7.287239 ATGCATGCATATTGGAGGATCTCCA 62.287 44.000 31.35 12.19 45.49 3.86
188 190 8.991561 ATGCATGCATATTGGAGGATCTCCAG 62.992 46.154 31.35 6.65 46.51 3.86
198 200 3.892284 GAGGATCTCCAGTGAGTAGTGA 58.108 50.000 0.00 0.00 39.75 3.41
199 201 3.626930 AGGATCTCCAGTGAGTAGTGAC 58.373 50.000 0.00 0.00 39.75 3.67
200 202 3.268334 AGGATCTCCAGTGAGTAGTGACT 59.732 47.826 0.00 0.00 39.75 3.41
201 203 3.380004 GGATCTCCAGTGAGTAGTGACTG 59.620 52.174 9.97 9.97 39.75 3.51
202 204 2.163509 TCTCCAGTGAGTAGTGACTGC 58.836 52.381 11.33 0.00 38.64 4.40
203 205 0.881796 TCCAGTGAGTAGTGACTGCG 59.118 55.000 11.33 5.67 38.64 5.18
204 206 0.109086 CCAGTGAGTAGTGACTGCGG 60.109 60.000 11.33 0.00 38.64 5.69
205 207 0.881796 CAGTGAGTAGTGACTGCGGA 59.118 55.000 4.13 0.00 35.45 5.54
206 208 1.269723 CAGTGAGTAGTGACTGCGGAA 59.730 52.381 4.13 0.00 35.45 4.30
207 209 2.094494 CAGTGAGTAGTGACTGCGGAAT 60.094 50.000 4.13 0.00 35.45 3.01
208 210 2.094494 AGTGAGTAGTGACTGCGGAATG 60.094 50.000 0.00 0.00 35.45 2.67
209 211 1.281899 GAGTAGTGACTGCGGAATGC 58.718 55.000 0.00 0.00 46.70 3.56
210 212 0.898320 AGTAGTGACTGCGGAATGCT 59.102 50.000 0.00 0.00 46.63 3.79
211 213 2.099263 GAGTAGTGACTGCGGAATGCTA 59.901 50.000 0.00 0.00 46.63 3.49
212 214 2.099921 AGTAGTGACTGCGGAATGCTAG 59.900 50.000 0.00 0.00 46.63 3.42
213 215 0.898320 AGTGACTGCGGAATGCTAGT 59.102 50.000 0.00 0.00 46.63 2.57
214 216 1.134965 AGTGACTGCGGAATGCTAGTC 60.135 52.381 0.00 10.47 46.63 2.59
215 217 0.179137 TGACTGCGGAATGCTAGTCG 60.179 55.000 0.00 0.00 46.10 4.18
216 218 0.872021 GACTGCGGAATGCTAGTCGG 60.872 60.000 0.00 0.00 46.63 4.79
217 219 1.320344 ACTGCGGAATGCTAGTCGGA 61.320 55.000 0.00 0.00 46.63 4.55
218 220 0.872021 CTGCGGAATGCTAGTCGGAC 60.872 60.000 0.00 0.00 46.63 4.79
219 221 1.141019 GCGGAATGCTAGTCGGACA 59.859 57.895 11.27 0.00 41.73 4.02
220 222 0.459585 GCGGAATGCTAGTCGGACAA 60.460 55.000 11.27 0.00 41.73 3.18
221 223 1.560923 CGGAATGCTAGTCGGACAAG 58.439 55.000 11.27 0.00 0.00 3.16
222 224 1.291132 GGAATGCTAGTCGGACAAGC 58.709 55.000 11.27 3.77 36.77 4.01
224 226 4.988065 TGCTAGTCGGACAAGCAC 57.012 55.556 11.27 0.00 41.15 4.40
225 227 2.046108 TGCTAGTCGGACAAGCACA 58.954 52.632 11.27 0.00 41.15 4.57
226 228 0.608130 TGCTAGTCGGACAAGCACAT 59.392 50.000 11.27 0.00 41.15 3.21
227 229 1.822371 TGCTAGTCGGACAAGCACATA 59.178 47.619 11.27 0.00 41.15 2.29
228 230 2.194271 GCTAGTCGGACAAGCACATAC 58.806 52.381 11.27 0.00 36.26 2.39
229 231 2.159226 GCTAGTCGGACAAGCACATACT 60.159 50.000 11.27 0.00 36.26 2.12
230 232 3.066342 GCTAGTCGGACAAGCACATACTA 59.934 47.826 11.27 0.00 36.26 1.82
231 233 3.505464 AGTCGGACAAGCACATACTAC 57.495 47.619 11.27 0.00 0.00 2.73
232 234 3.090037 AGTCGGACAAGCACATACTACT 58.910 45.455 11.27 0.00 0.00 2.57
233 235 4.267536 AGTCGGACAAGCACATACTACTA 58.732 43.478 11.27 0.00 0.00 1.82
234 236 4.335874 AGTCGGACAAGCACATACTACTAG 59.664 45.833 11.27 0.00 0.00 2.57
235 237 3.630769 TCGGACAAGCACATACTACTAGG 59.369 47.826 0.00 0.00 0.00 3.02
236 238 3.630769 CGGACAAGCACATACTACTAGGA 59.369 47.826 0.00 0.00 0.00 2.94
237 239 4.097437 CGGACAAGCACATACTACTAGGAA 59.903 45.833 0.00 0.00 0.00 3.36
238 240 5.593010 GGACAAGCACATACTACTAGGAAG 58.407 45.833 0.00 0.00 0.00 3.46
239 241 5.452077 GGACAAGCACATACTACTAGGAAGG 60.452 48.000 0.00 0.00 0.00 3.46
240 242 5.269991 ACAAGCACATACTACTAGGAAGGA 58.730 41.667 0.00 0.00 0.00 3.36
241 243 5.361285 ACAAGCACATACTACTAGGAAGGAG 59.639 44.000 0.00 0.00 39.89 3.69
243 245 4.890581 AGCACATACTACTAGGAAGGAGTG 59.109 45.833 0.38 3.78 46.97 3.51
244 246 4.645588 GCACATACTACTAGGAAGGAGTGT 59.354 45.833 0.38 0.00 46.97 3.55
248 250 7.499321 CATACTACTAGGAAGGAGTGTGTAG 57.501 44.000 6.40 0.00 46.97 2.74
249 251 5.517620 ACTACTAGGAAGGAGTGTGTAGT 57.482 43.478 0.00 0.00 45.80 2.73
250 252 5.890049 ACTACTAGGAAGGAGTGTGTAGTT 58.110 41.667 0.00 0.00 45.80 2.24
251 253 6.313324 ACTACTAGGAAGGAGTGTGTAGTTT 58.687 40.000 0.00 0.00 45.80 2.66
252 254 5.725325 ACTAGGAAGGAGTGTGTAGTTTC 57.275 43.478 0.00 0.00 0.00 2.78
253 255 5.395611 ACTAGGAAGGAGTGTGTAGTTTCT 58.604 41.667 0.00 0.00 0.00 2.52
254 256 6.550163 ACTAGGAAGGAGTGTGTAGTTTCTA 58.450 40.000 0.00 0.00 0.00 2.10
255 257 5.986501 AGGAAGGAGTGTGTAGTTTCTAG 57.013 43.478 0.00 0.00 0.00 2.43
256 258 4.773149 AGGAAGGAGTGTGTAGTTTCTAGG 59.227 45.833 0.00 0.00 0.00 3.02
257 259 4.496360 GAAGGAGTGTGTAGTTTCTAGGC 58.504 47.826 0.00 0.00 0.00 3.93
258 260 3.507411 AGGAGTGTGTAGTTTCTAGGCA 58.493 45.455 0.00 0.00 0.00 4.75
259 261 3.511934 AGGAGTGTGTAGTTTCTAGGCAG 59.488 47.826 0.00 0.00 0.00 4.85
260 262 3.368531 GGAGTGTGTAGTTTCTAGGCAGG 60.369 52.174 0.00 0.00 0.00 4.85
261 263 3.507411 AGTGTGTAGTTTCTAGGCAGGA 58.493 45.455 0.00 0.00 0.00 3.86
262 264 4.097418 AGTGTGTAGTTTCTAGGCAGGAT 58.903 43.478 0.00 0.00 0.00 3.24
263 265 4.081420 AGTGTGTAGTTTCTAGGCAGGATG 60.081 45.833 0.00 0.00 40.87 3.51
264 266 3.197766 TGTGTAGTTTCTAGGCAGGATGG 59.802 47.826 0.00 0.00 35.86 3.51
265 267 3.451178 GTGTAGTTTCTAGGCAGGATGGA 59.549 47.826 0.00 0.00 35.86 3.41
266 268 3.451178 TGTAGTTTCTAGGCAGGATGGAC 59.549 47.826 0.00 0.00 35.86 4.02
267 269 1.840635 AGTTTCTAGGCAGGATGGACC 59.159 52.381 0.00 0.00 35.86 4.46
268 270 1.559682 GTTTCTAGGCAGGATGGACCA 59.440 52.381 0.00 0.00 42.04 4.02
269 271 1.965414 TTCTAGGCAGGATGGACCAA 58.035 50.000 0.00 0.00 42.04 3.67
270 272 1.204146 TCTAGGCAGGATGGACCAAC 58.796 55.000 0.00 0.00 42.04 3.77
271 273 1.207791 CTAGGCAGGATGGACCAACT 58.792 55.000 0.00 0.00 42.04 3.16
272 274 0.911769 TAGGCAGGATGGACCAACTG 59.088 55.000 19.88 19.88 42.04 3.16
275 277 2.559785 CAGGATGGACCAACTGCAC 58.440 57.895 14.42 0.00 42.04 4.57
276 278 0.037303 CAGGATGGACCAACTGCACT 59.963 55.000 14.42 0.00 42.04 4.40
277 279 0.037303 AGGATGGACCAACTGCACTG 59.963 55.000 0.00 0.00 42.04 3.66
278 280 1.589716 GGATGGACCAACTGCACTGC 61.590 60.000 0.00 0.00 38.79 4.40
279 281 0.890542 GATGGACCAACTGCACTGCA 60.891 55.000 3.11 3.11 36.92 4.41
280 282 1.174712 ATGGACCAACTGCACTGCAC 61.175 55.000 0.00 0.00 33.79 4.57
281 283 2.633657 GACCAACTGCACTGCACG 59.366 61.111 0.00 0.00 33.79 5.34
282 284 3.527360 GACCAACTGCACTGCACGC 62.527 63.158 0.00 0.00 33.79 5.34
283 285 4.332637 CCAACTGCACTGCACGCC 62.333 66.667 0.00 0.00 33.79 5.68
284 286 3.282157 CAACTGCACTGCACGCCT 61.282 61.111 0.00 0.00 33.79 5.52
285 287 1.960763 CAACTGCACTGCACGCCTA 60.961 57.895 0.00 0.00 33.79 3.93
286 288 1.669115 AACTGCACTGCACGCCTAG 60.669 57.895 0.00 0.00 33.79 3.02
287 289 3.494336 CTGCACTGCACGCCTAGC 61.494 66.667 0.00 0.00 33.79 3.42
288 290 3.947132 CTGCACTGCACGCCTAGCT 62.947 63.158 0.00 0.00 33.79 3.32
289 291 2.184322 GCACTGCACGCCTAGCTA 59.816 61.111 0.00 0.00 0.00 3.32
290 292 1.880340 GCACTGCACGCCTAGCTAG 60.880 63.158 14.20 14.20 0.00 3.42
291 293 1.880340 CACTGCACGCCTAGCTAGC 60.880 63.158 15.74 6.62 0.00 3.42
292 294 2.055042 ACTGCACGCCTAGCTAGCT 61.055 57.895 23.12 23.12 0.00 3.32
293 295 1.299773 CTGCACGCCTAGCTAGCTC 60.300 63.158 23.26 6.13 0.00 4.09
294 296 2.028337 GCACGCCTAGCTAGCTCC 59.972 66.667 23.26 10.12 0.00 4.70
295 297 2.333225 CACGCCTAGCTAGCTCCG 59.667 66.667 23.26 22.97 0.00 4.63
296 298 3.597728 ACGCCTAGCTAGCTCCGC 61.598 66.667 23.26 21.70 0.00 5.54
297 299 4.350441 CGCCTAGCTAGCTCCGCC 62.350 72.222 23.26 7.49 0.00 6.13
298 300 3.997397 GCCTAGCTAGCTCCGCCC 61.997 72.222 23.26 2.74 0.00 6.13
299 301 2.203567 CCTAGCTAGCTCCGCCCT 60.204 66.667 23.26 0.00 0.00 5.19
300 302 2.272447 CCTAGCTAGCTCCGCCCTC 61.272 68.421 23.26 0.00 0.00 4.30
301 303 1.228429 CTAGCTAGCTCCGCCCTCT 60.228 63.158 23.26 0.00 0.00 3.69
302 304 0.037017 CTAGCTAGCTCCGCCCTCTA 59.963 60.000 23.26 0.00 0.00 2.43
303 305 0.699399 TAGCTAGCTCCGCCCTCTAT 59.301 55.000 23.26 0.00 0.00 1.98
304 306 0.610785 AGCTAGCTCCGCCCTCTATC 60.611 60.000 12.68 0.00 0.00 2.08
305 307 0.610785 GCTAGCTCCGCCCTCTATCT 60.611 60.000 7.70 0.00 0.00 1.98
306 308 1.917872 CTAGCTCCGCCCTCTATCTT 58.082 55.000 0.00 0.00 0.00 2.40
307 309 2.243810 CTAGCTCCGCCCTCTATCTTT 58.756 52.381 0.00 0.00 0.00 2.52
308 310 0.755686 AGCTCCGCCCTCTATCTTTG 59.244 55.000 0.00 0.00 0.00 2.77
309 311 0.466124 GCTCCGCCCTCTATCTTTGT 59.534 55.000 0.00 0.00 0.00 2.83
310 312 1.687123 GCTCCGCCCTCTATCTTTGTA 59.313 52.381 0.00 0.00 0.00 2.41
311 313 2.102588 GCTCCGCCCTCTATCTTTGTAA 59.897 50.000 0.00 0.00 0.00 2.41
312 314 3.718815 CTCCGCCCTCTATCTTTGTAAC 58.281 50.000 0.00 0.00 0.00 2.50
313 315 2.100252 TCCGCCCTCTATCTTTGTAACG 59.900 50.000 0.00 0.00 0.00 3.18
314 316 1.859080 CGCCCTCTATCTTTGTAACGC 59.141 52.381 0.00 0.00 0.00 4.84
315 317 2.737359 CGCCCTCTATCTTTGTAACGCA 60.737 50.000 0.00 0.00 0.00 5.24
316 318 3.467803 GCCCTCTATCTTTGTAACGCAT 58.532 45.455 0.00 0.00 0.00 4.73
317 319 3.495001 GCCCTCTATCTTTGTAACGCATC 59.505 47.826 0.00 0.00 0.00 3.91
318 320 3.736252 CCCTCTATCTTTGTAACGCATCG 59.264 47.826 0.00 0.00 0.00 3.84
319 321 4.499188 CCCTCTATCTTTGTAACGCATCGA 60.499 45.833 0.00 0.00 0.00 3.59
320 322 4.441415 CCTCTATCTTTGTAACGCATCGAC 59.559 45.833 0.00 0.00 0.00 4.20
321 323 4.357142 TCTATCTTTGTAACGCATCGACC 58.643 43.478 0.00 0.00 0.00 4.79
322 324 1.717194 TCTTTGTAACGCATCGACCC 58.283 50.000 0.00 0.00 0.00 4.46
323 325 0.725117 CTTTGTAACGCATCGACCCC 59.275 55.000 0.00 0.00 0.00 4.95
324 326 0.035036 TTTGTAACGCATCGACCCCA 59.965 50.000 0.00 0.00 0.00 4.96
325 327 0.250793 TTGTAACGCATCGACCCCAT 59.749 50.000 0.00 0.00 0.00 4.00
326 328 0.179094 TGTAACGCATCGACCCCATC 60.179 55.000 0.00 0.00 0.00 3.51
337 339 1.954927 GACCCCATCGGAACAATCTC 58.045 55.000 0.00 0.00 34.64 2.75
338 340 1.209504 GACCCCATCGGAACAATCTCA 59.790 52.381 0.00 0.00 34.64 3.27
339 341 1.633432 ACCCCATCGGAACAATCTCAA 59.367 47.619 0.00 0.00 34.64 3.02
340 342 2.242196 ACCCCATCGGAACAATCTCAAT 59.758 45.455 0.00 0.00 34.64 2.57
341 343 3.458118 ACCCCATCGGAACAATCTCAATA 59.542 43.478 0.00 0.00 34.64 1.90
342 344 3.815401 CCCCATCGGAACAATCTCAATAC 59.185 47.826 0.00 0.00 0.00 1.89
343 345 3.494626 CCCATCGGAACAATCTCAATACG 59.505 47.826 0.00 0.00 0.00 3.06
344 346 3.059597 CCATCGGAACAATCTCAATACGC 60.060 47.826 0.00 0.00 0.00 4.42
345 347 3.239587 TCGGAACAATCTCAATACGCA 57.760 42.857 0.00 0.00 0.00 5.24
346 348 3.792401 TCGGAACAATCTCAATACGCAT 58.208 40.909 0.00 0.00 0.00 4.73
347 349 4.939271 TCGGAACAATCTCAATACGCATA 58.061 39.130 0.00 0.00 0.00 3.14
348 350 5.538118 TCGGAACAATCTCAATACGCATAT 58.462 37.500 0.00 0.00 0.00 1.78
349 351 5.633601 TCGGAACAATCTCAATACGCATATC 59.366 40.000 0.00 0.00 0.00 1.63
350 352 5.163953 CGGAACAATCTCAATACGCATATCC 60.164 44.000 0.00 0.00 0.00 2.59
351 353 5.700832 GGAACAATCTCAATACGCATATCCA 59.299 40.000 0.00 0.00 0.00 3.41
352 354 6.347725 GGAACAATCTCAATACGCATATCCAC 60.348 42.308 0.00 0.00 0.00 4.02
353 355 5.610398 ACAATCTCAATACGCATATCCACA 58.390 37.500 0.00 0.00 0.00 4.17
354 356 5.466728 ACAATCTCAATACGCATATCCACAC 59.533 40.000 0.00 0.00 0.00 3.82
355 357 4.664150 TCTCAATACGCATATCCACACA 57.336 40.909 0.00 0.00 0.00 3.72
356 358 5.017294 TCTCAATACGCATATCCACACAA 57.983 39.130 0.00 0.00 0.00 3.33
357 359 5.049828 TCTCAATACGCATATCCACACAAG 58.950 41.667 0.00 0.00 0.00 3.16
358 360 5.017294 TCAATACGCATATCCACACAAGA 57.983 39.130 0.00 0.00 0.00 3.02
359 361 5.049828 TCAATACGCATATCCACACAAGAG 58.950 41.667 0.00 0.00 0.00 2.85
360 362 4.937201 ATACGCATATCCACACAAGAGA 57.063 40.909 0.00 0.00 0.00 3.10
361 363 2.893637 ACGCATATCCACACAAGAGAC 58.106 47.619 0.00 0.00 0.00 3.36
362 364 2.497675 ACGCATATCCACACAAGAGACT 59.502 45.455 0.00 0.00 0.00 3.24
363 365 3.119291 CGCATATCCACACAAGAGACTC 58.881 50.000 0.00 0.00 0.00 3.36
364 366 3.119291 GCATATCCACACAAGAGACTCG 58.881 50.000 0.00 0.00 0.00 4.18
365 367 3.181486 GCATATCCACACAAGAGACTCGA 60.181 47.826 0.00 0.00 0.00 4.04
366 368 4.678044 GCATATCCACACAAGAGACTCGAA 60.678 45.833 0.00 0.00 0.00 3.71
367 369 3.584406 ATCCACACAAGAGACTCGAAG 57.416 47.619 0.00 0.00 0.00 3.79
368 370 1.000163 TCCACACAAGAGACTCGAAGC 60.000 52.381 0.00 0.00 0.00 3.86
369 371 1.056103 CACACAAGAGACTCGAAGCG 58.944 55.000 0.00 0.00 0.00 4.68
370 372 0.669077 ACACAAGAGACTCGAAGCGT 59.331 50.000 0.00 0.00 0.00 5.07
371 373 1.056103 CACAAGAGACTCGAAGCGTG 58.944 55.000 0.00 0.00 0.00 5.34
372 374 0.664767 ACAAGAGACTCGAAGCGTGC 60.665 55.000 0.00 0.00 0.00 5.34
373 375 0.664466 CAAGAGACTCGAAGCGTGCA 60.664 55.000 0.00 0.00 0.00 4.57
374 376 0.032130 AAGAGACTCGAAGCGTGCAA 59.968 50.000 0.00 0.00 0.00 4.08
375 377 0.244994 AGAGACTCGAAGCGTGCAAT 59.755 50.000 0.00 0.00 0.00 3.56
376 378 0.368227 GAGACTCGAAGCGTGCAATG 59.632 55.000 0.00 0.00 0.00 2.82
393 395 4.783621 GCCGATGCAGTGCAGGGA 62.784 66.667 31.54 8.61 43.65 4.20
394 396 2.821366 CCGATGCAGTGCAGGGAC 60.821 66.667 26.13 15.35 43.65 4.46
395 397 2.821366 CGATGCAGTGCAGGGACC 60.821 66.667 24.20 8.76 43.65 4.46
396 398 2.352422 GATGCAGTGCAGGGACCA 59.648 61.111 24.20 0.00 43.65 4.02
397 399 1.077212 GATGCAGTGCAGGGACCAT 60.077 57.895 24.20 4.15 43.65 3.55
398 400 0.682209 GATGCAGTGCAGGGACCATT 60.682 55.000 24.20 3.30 43.65 3.16
399 401 0.251922 ATGCAGTGCAGGGACCATTT 60.252 50.000 24.20 0.00 43.65 2.32
400 402 0.403655 TGCAGTGCAGGGACCATTTA 59.596 50.000 15.37 0.00 33.32 1.40
401 403 1.098050 GCAGTGCAGGGACCATTTAG 58.902 55.000 11.09 0.00 0.00 1.85
402 404 1.340017 GCAGTGCAGGGACCATTTAGA 60.340 52.381 11.09 0.00 0.00 2.10
403 405 2.359900 CAGTGCAGGGACCATTTAGAC 58.640 52.381 0.00 0.00 0.00 2.59
404 406 1.066143 AGTGCAGGGACCATTTAGACG 60.066 52.381 0.00 0.00 0.00 4.18
405 407 1.066430 GTGCAGGGACCATTTAGACGA 60.066 52.381 0.00 0.00 0.00 4.20
406 408 1.626321 TGCAGGGACCATTTAGACGAA 59.374 47.619 0.00 0.00 0.00 3.85
407 409 2.007608 GCAGGGACCATTTAGACGAAC 58.992 52.381 0.00 0.00 0.00 3.95
408 410 2.629051 CAGGGACCATTTAGACGAACC 58.371 52.381 0.00 0.00 0.00 3.62
409 411 2.236395 CAGGGACCATTTAGACGAACCT 59.764 50.000 0.00 0.00 0.00 3.50
410 412 3.449737 CAGGGACCATTTAGACGAACCTA 59.550 47.826 0.00 0.00 0.00 3.08
411 413 3.705072 AGGGACCATTTAGACGAACCTAG 59.295 47.826 0.00 0.00 0.00 3.02
412 414 3.181468 GGGACCATTTAGACGAACCTAGG 60.181 52.174 7.41 7.41 0.00 3.02
413 415 3.450096 GGACCATTTAGACGAACCTAGGT 59.550 47.826 9.21 9.21 0.00 3.08
414 416 4.646492 GGACCATTTAGACGAACCTAGGTA 59.354 45.833 16.67 0.00 0.00 3.08
415 417 5.451103 GGACCATTTAGACGAACCTAGGTAC 60.451 48.000 16.67 7.48 0.00 3.34
416 418 4.096984 ACCATTTAGACGAACCTAGGTACG 59.903 45.833 16.67 7.96 0.00 3.67
417 419 4.096984 CCATTTAGACGAACCTAGGTACGT 59.903 45.833 16.67 10.78 41.57 3.57
418 420 5.296780 CCATTTAGACGAACCTAGGTACGTA 59.703 44.000 16.67 0.05 39.04 3.57
419 421 6.183360 CCATTTAGACGAACCTAGGTACGTAA 60.183 42.308 16.67 6.45 39.04 3.18
420 422 6.422776 TTTAGACGAACCTAGGTACGTAAG 57.577 41.667 16.67 5.81 39.04 2.34
421 423 3.274288 AGACGAACCTAGGTACGTAAGG 58.726 50.000 16.67 9.77 46.39 2.69
422 424 3.010420 GACGAACCTAGGTACGTAAGGT 58.990 50.000 16.67 10.98 45.62 3.50
423 425 2.749621 ACGAACCTAGGTACGTAAGGTG 59.250 50.000 16.67 8.83 42.86 4.00
424 426 2.098117 CGAACCTAGGTACGTAAGGTGG 59.902 54.545 16.67 10.35 42.86 4.61
425 427 1.478631 ACCTAGGTACGTAAGGTGGC 58.521 55.000 14.41 0.00 42.08 5.01
426 428 1.006400 ACCTAGGTACGTAAGGTGGCT 59.994 52.381 14.41 0.00 42.08 4.75
427 429 2.242196 ACCTAGGTACGTAAGGTGGCTA 59.758 50.000 14.41 0.00 42.08 3.93
428 430 2.620585 CCTAGGTACGTAAGGTGGCTAC 59.379 54.545 0.00 0.00 46.39 3.58
429 431 1.098050 AGGTACGTAAGGTGGCTACG 58.902 55.000 0.00 2.90 45.93 3.51
430 432 0.526310 GGTACGTAAGGTGGCTACGC 60.526 60.000 0.00 0.00 44.68 4.42
431 433 0.453390 GTACGTAAGGTGGCTACGCT 59.547 55.000 0.00 0.00 44.68 5.07
432 434 1.670811 GTACGTAAGGTGGCTACGCTA 59.329 52.381 0.00 0.00 44.68 4.26
433 435 1.176527 ACGTAAGGTGGCTACGCTAA 58.823 50.000 4.21 0.00 44.68 3.09
434 436 1.133790 ACGTAAGGTGGCTACGCTAAG 59.866 52.381 4.21 0.00 44.68 2.18
435 437 1.568606 GTAAGGTGGCTACGCTAAGC 58.431 55.000 0.00 0.00 41.99 3.09
446 448 3.724494 GCTAAGCGTGGCTCCATC 58.276 61.111 0.00 0.00 38.25 3.51
447 449 1.889573 GCTAAGCGTGGCTCCATCC 60.890 63.158 0.00 0.00 38.25 3.51
448 450 1.522092 CTAAGCGTGGCTCCATCCA 59.478 57.895 0.00 0.00 38.25 3.41
454 456 2.910360 TGGCTCCATCCACATCGG 59.090 61.111 0.00 0.00 0.00 4.18
455 457 2.592861 GGCTCCATCCACATCGGC 60.593 66.667 0.00 0.00 33.14 5.54
456 458 2.592861 GCTCCATCCACATCGGCC 60.593 66.667 0.00 0.00 33.14 6.13
457 459 2.280389 CTCCATCCACATCGGCCG 60.280 66.667 22.12 22.12 33.14 6.13
458 460 4.545706 TCCATCCACATCGGCCGC 62.546 66.667 23.51 0.00 33.14 6.53
460 462 4.854924 CATCCACATCGGCCGCCA 62.855 66.667 23.51 4.04 33.14 5.69
461 463 4.552365 ATCCACATCGGCCGCCAG 62.552 66.667 23.51 15.12 33.14 4.85
464 466 4.776322 CACATCGGCCGCCAGGAA 62.776 66.667 23.51 1.11 41.02 3.36
465 467 4.473520 ACATCGGCCGCCAGGAAG 62.474 66.667 23.51 1.65 41.02 3.46
469 471 4.715523 CGGCCGCCAGGAAGGAAA 62.716 66.667 14.67 0.00 41.22 3.13
470 472 2.751837 GGCCGCCAGGAAGGAAAG 60.752 66.667 3.91 0.00 41.22 2.62
471 473 2.751837 GCCGCCAGGAAGGAAAGG 60.752 66.667 5.63 0.00 41.22 3.11
472 474 3.077907 CCGCCAGGAAGGAAAGGA 58.922 61.111 0.00 0.00 41.22 3.36
473 475 1.378762 CCGCCAGGAAGGAAAGGAA 59.621 57.895 0.00 0.00 41.22 3.36
474 476 0.251165 CCGCCAGGAAGGAAAGGAAA 60.251 55.000 0.00 0.00 41.22 3.13
475 477 1.168714 CGCCAGGAAGGAAAGGAAAG 58.831 55.000 0.00 0.00 41.22 2.62
476 478 1.550327 GCCAGGAAGGAAAGGAAAGG 58.450 55.000 0.00 0.00 41.22 3.11
477 479 1.203063 GCCAGGAAGGAAAGGAAAGGT 60.203 52.381 0.00 0.00 41.22 3.50
478 480 2.519013 CCAGGAAGGAAAGGAAAGGTG 58.481 52.381 0.00 0.00 41.22 4.00
479 481 2.158460 CCAGGAAGGAAAGGAAAGGTGT 60.158 50.000 0.00 0.00 41.22 4.16
480 482 3.566351 CAGGAAGGAAAGGAAAGGTGTT 58.434 45.455 0.00 0.00 0.00 3.32
481 483 3.319122 CAGGAAGGAAAGGAAAGGTGTTG 59.681 47.826 0.00 0.00 0.00 3.33
482 484 2.035961 GGAAGGAAAGGAAAGGTGTTGC 59.964 50.000 0.00 0.00 0.00 4.17
483 485 2.755952 AGGAAAGGAAAGGTGTTGCT 57.244 45.000 0.00 0.00 0.00 3.91
484 486 3.876309 AGGAAAGGAAAGGTGTTGCTA 57.124 42.857 0.00 0.00 0.00 3.49
485 487 4.178956 AGGAAAGGAAAGGTGTTGCTAA 57.821 40.909 0.00 0.00 0.00 3.09
486 488 4.145052 AGGAAAGGAAAGGTGTTGCTAAG 58.855 43.478 0.00 0.00 0.00 2.18
487 489 3.305403 GGAAAGGAAAGGTGTTGCTAAGC 60.305 47.826 0.00 0.00 0.00 3.09
488 490 2.959465 AGGAAAGGTGTTGCTAAGCT 57.041 45.000 0.00 0.00 0.00 3.74
489 491 4.367039 AAGGAAAGGTGTTGCTAAGCTA 57.633 40.909 0.00 0.00 0.00 3.32
490 492 3.944087 AGGAAAGGTGTTGCTAAGCTAG 58.056 45.455 0.00 0.00 0.00 3.42
499 501 1.856012 GCTAAGCTAGCGCCATTCG 59.144 57.895 9.55 0.00 42.62 3.34
500 502 0.876342 GCTAAGCTAGCGCCATTCGT 60.876 55.000 9.55 0.00 42.62 3.85
501 503 0.855349 CTAAGCTAGCGCCATTCGTG 59.145 55.000 9.55 0.00 41.07 4.35
502 504 0.174845 TAAGCTAGCGCCATTCGTGT 59.825 50.000 9.55 0.00 41.07 4.49
503 505 0.174845 AAGCTAGCGCCATTCGTGTA 59.825 50.000 9.55 0.00 41.07 2.90
504 506 0.174845 AGCTAGCGCCATTCGTGTAA 59.825 50.000 9.55 0.00 41.07 2.41
505 507 0.300789 GCTAGCGCCATTCGTGTAAC 59.699 55.000 2.29 0.00 41.07 2.50
506 508 0.928229 CTAGCGCCATTCGTGTAACC 59.072 55.000 2.29 0.00 41.07 2.85
507 509 0.246910 TAGCGCCATTCGTGTAACCA 59.753 50.000 2.29 0.00 41.07 3.67
508 510 0.604243 AGCGCCATTCGTGTAACCAA 60.604 50.000 2.29 0.00 41.07 3.67
509 511 0.453782 GCGCCATTCGTGTAACCAAC 60.454 55.000 0.00 0.00 41.07 3.77
510 512 0.167251 CGCCATTCGTGTAACCAACC 59.833 55.000 0.00 0.00 0.00 3.77
511 513 1.240256 GCCATTCGTGTAACCAACCA 58.760 50.000 0.00 0.00 0.00 3.67
512 514 1.609555 GCCATTCGTGTAACCAACCAA 59.390 47.619 0.00 0.00 0.00 3.67
513 515 2.034812 GCCATTCGTGTAACCAACCAAA 59.965 45.455 0.00 0.00 0.00 3.28
514 516 3.305744 GCCATTCGTGTAACCAACCAAAT 60.306 43.478 0.00 0.00 0.00 2.32
515 517 4.082679 GCCATTCGTGTAACCAACCAAATA 60.083 41.667 0.00 0.00 0.00 1.40
516 518 5.395642 CCATTCGTGTAACCAACCAAATAC 58.604 41.667 0.00 0.00 0.00 1.89
517 519 5.048643 CCATTCGTGTAACCAACCAAATACA 60.049 40.000 0.00 0.00 0.00 2.29
518 520 6.439599 CATTCGTGTAACCAACCAAATACAA 58.560 36.000 0.00 0.00 30.71 2.41
519 521 6.636562 TTCGTGTAACCAACCAAATACAAT 57.363 33.333 0.00 0.00 30.71 2.71
520 522 6.003234 TCGTGTAACCAACCAAATACAATG 57.997 37.500 0.00 0.00 30.71 2.82
521 523 5.763698 TCGTGTAACCAACCAAATACAATGA 59.236 36.000 0.00 0.00 30.71 2.57
522 524 6.072948 TCGTGTAACCAACCAAATACAATGAG 60.073 38.462 0.00 0.00 30.71 2.90
523 525 5.861787 GTGTAACCAACCAAATACAATGAGC 59.138 40.000 0.00 0.00 30.71 4.26
524 526 4.535526 AACCAACCAAATACAATGAGCC 57.464 40.909 0.00 0.00 0.00 4.70
525 527 3.778265 ACCAACCAAATACAATGAGCCT 58.222 40.909 0.00 0.00 0.00 4.58
526 528 3.763897 ACCAACCAAATACAATGAGCCTC 59.236 43.478 0.00 0.00 0.00 4.70
527 529 3.131046 CCAACCAAATACAATGAGCCTCC 59.869 47.826 0.00 0.00 0.00 4.30
528 530 3.737559 ACCAAATACAATGAGCCTCCA 57.262 42.857 0.00 0.00 0.00 3.86
529 531 4.255510 ACCAAATACAATGAGCCTCCAT 57.744 40.909 0.00 0.00 0.00 3.41
530 532 4.613437 ACCAAATACAATGAGCCTCCATT 58.387 39.130 0.00 0.00 37.24 3.16
542 544 7.756395 ATGAGCCTCCATTGATTATTAGTTG 57.244 36.000 0.00 0.00 0.00 3.16
543 545 6.064060 TGAGCCTCCATTGATTATTAGTTGG 58.936 40.000 0.00 0.00 0.00 3.77
544 546 6.018433 AGCCTCCATTGATTATTAGTTGGT 57.982 37.500 0.00 0.00 0.00 3.67
545 547 6.435164 AGCCTCCATTGATTATTAGTTGGTT 58.565 36.000 0.00 0.00 0.00 3.67
546 548 7.582719 AGCCTCCATTGATTATTAGTTGGTTA 58.417 34.615 0.00 0.00 0.00 2.85
547 549 7.721399 AGCCTCCATTGATTATTAGTTGGTTAG 59.279 37.037 0.00 0.00 0.00 2.34
548 550 7.502561 GCCTCCATTGATTATTAGTTGGTTAGT 59.497 37.037 0.00 0.00 0.00 2.24
549 551 9.408648 CCTCCATTGATTATTAGTTGGTTAGTT 57.591 33.333 0.00 0.00 0.00 2.24
562 564 9.611284 TTAGTTGGTTAGTTACGTATATATGCG 57.389 33.333 19.86 19.86 41.71 4.73
563 565 7.874940 AGTTGGTTAGTTACGTATATATGCGA 58.125 34.615 26.79 10.04 39.23 5.10
564 566 8.517878 AGTTGGTTAGTTACGTATATATGCGAT 58.482 33.333 26.79 14.58 39.23 4.58
565 567 9.132521 GTTGGTTAGTTACGTATATATGCGATT 57.867 33.333 26.79 10.33 39.23 3.34
566 568 8.900511 TGGTTAGTTACGTATATATGCGATTC 57.099 34.615 26.79 15.79 39.23 2.52
567 569 7.693536 TGGTTAGTTACGTATATATGCGATTCG 59.306 37.037 26.79 0.62 39.23 3.34
568 570 7.693951 GGTTAGTTACGTATATATGCGATTCGT 59.306 37.037 26.79 13.84 39.23 3.85
569 571 8.510714 GTTAGTTACGTATATATGCGATTCGTG 58.489 37.037 26.79 0.00 39.23 4.35
570 572 6.605849 AGTTACGTATATATGCGATTCGTGT 58.394 36.000 26.79 7.67 39.23 4.49
571 573 6.740002 AGTTACGTATATATGCGATTCGTGTC 59.260 38.462 26.79 9.74 39.23 3.67
572 574 4.086574 ACGTATATATGCGATTCGTGTCG 58.913 43.478 26.79 7.63 44.14 4.35
578 580 2.979808 CGATTCGTGTCGCGTCAG 59.020 61.111 6.22 1.57 42.13 3.51
579 581 1.796355 CGATTCGTGTCGCGTCAGT 60.796 57.895 6.22 0.00 42.13 3.41
580 582 1.334992 CGATTCGTGTCGCGTCAGTT 61.335 55.000 6.22 0.00 42.13 3.16
581 583 0.362512 GATTCGTGTCGCGTCAGTTC 59.637 55.000 6.22 0.00 42.13 3.01
582 584 1.334992 ATTCGTGTCGCGTCAGTTCG 61.335 55.000 6.22 7.38 42.13 3.95
583 585 2.651367 TTCGTGTCGCGTCAGTTCGT 62.651 55.000 6.22 0.00 42.13 3.85
584 586 2.837280 GTGTCGCGTCAGTTCGTG 59.163 61.111 6.22 0.00 41.75 4.35
585 587 2.354188 TGTCGCGTCAGTTCGTGG 60.354 61.111 5.77 0.00 40.93 4.94
586 588 3.764049 GTCGCGTCAGTTCGTGGC 61.764 66.667 5.77 0.00 40.93 5.01
587 589 4.273257 TCGCGTCAGTTCGTGGCA 62.273 61.111 5.77 0.00 40.93 4.92
588 590 3.334751 CGCGTCAGTTCGTGGCAA 61.335 61.111 0.00 0.00 37.62 4.52
589 591 2.248431 GCGTCAGTTCGTGGCAAC 59.752 61.111 0.00 0.00 0.00 4.17
590 592 2.935955 CGTCAGTTCGTGGCAACC 59.064 61.111 0.00 0.00 0.00 3.77
591 593 1.594293 CGTCAGTTCGTGGCAACCT 60.594 57.895 0.00 0.00 0.00 3.50
592 594 1.157870 CGTCAGTTCGTGGCAACCTT 61.158 55.000 0.00 0.00 0.00 3.50
593 595 1.870580 CGTCAGTTCGTGGCAACCTTA 60.871 52.381 0.00 0.00 0.00 2.69
594 596 1.798813 GTCAGTTCGTGGCAACCTTAG 59.201 52.381 0.00 0.00 0.00 2.18
595 597 0.517316 CAGTTCGTGGCAACCTTAGC 59.483 55.000 0.00 0.00 0.00 3.09
596 598 0.396811 AGTTCGTGGCAACCTTAGCT 59.603 50.000 0.00 0.00 0.00 3.32
597 599 1.621814 AGTTCGTGGCAACCTTAGCTA 59.378 47.619 0.00 0.00 0.00 3.32
598 600 2.000447 GTTCGTGGCAACCTTAGCTAG 59.000 52.381 0.00 0.00 0.00 3.42
612 614 5.110940 CTTAGCTAGGAAGTAGTTAGCGG 57.889 47.826 0.00 0.00 43.43 5.52
613 615 3.015675 AGCTAGGAAGTAGTTAGCGGT 57.984 47.619 0.00 0.00 43.43 5.68
614 616 4.162040 AGCTAGGAAGTAGTTAGCGGTA 57.838 45.455 0.00 0.00 43.43 4.02
615 617 4.727677 AGCTAGGAAGTAGTTAGCGGTAT 58.272 43.478 0.00 0.00 43.43 2.73
616 618 4.519730 AGCTAGGAAGTAGTTAGCGGTATG 59.480 45.833 0.00 0.00 43.43 2.39
617 619 3.729862 AGGAAGTAGTTAGCGGTATGC 57.270 47.619 0.00 0.00 46.98 3.14
636 638 1.964552 CATCTCCTGCTCATTGGGAC 58.035 55.000 0.00 0.00 0.00 4.46
637 639 0.467384 ATCTCCTGCTCATTGGGACG 59.533 55.000 0.00 0.00 0.00 4.79
638 640 0.614697 TCTCCTGCTCATTGGGACGA 60.615 55.000 0.00 0.00 0.00 4.20
639 641 0.250234 CTCCTGCTCATTGGGACGAA 59.750 55.000 0.00 0.00 0.00 3.85
640 642 0.690192 TCCTGCTCATTGGGACGAAA 59.310 50.000 0.00 0.00 0.00 3.46
641 643 0.804989 CCTGCTCATTGGGACGAAAC 59.195 55.000 0.00 0.00 0.00 2.78
642 644 0.443869 CTGCTCATTGGGACGAAACG 59.556 55.000 0.00 0.00 0.00 3.60
742 744 1.326548 CACCGCGGATTTAGTAACAGC 59.673 52.381 35.90 0.00 0.00 4.40
865 867 3.682858 GCCGTTTGTGCTTAAGATAGACA 59.317 43.478 6.67 0.00 0.00 3.41
931 933 1.775039 CTCGCTCTCCTCTCTGCTCG 61.775 65.000 0.00 0.00 0.00 5.03
1029 1052 0.031449 GGAGCGATAGTGAGAGCACC 59.969 60.000 0.00 0.00 46.32 5.01
1062 1085 0.738975 CGCAGTACATCTCCTCCGAA 59.261 55.000 0.00 0.00 0.00 4.30
1082 1105 1.150135 AGACTCCCCTCTCAAGGTCAA 59.850 52.381 0.00 0.00 41.59 3.18
1528 1762 4.202451 TGGCTTATGTATGAGCATAGCCAA 60.202 41.667 17.22 5.74 43.72 4.52
1577 1811 4.279169 AGCATTCAAGCACTGTACACAATT 59.721 37.500 0.00 0.00 36.85 2.32
1705 1940 5.814764 ATGATGCTGAGAACATTTCAGTC 57.185 39.130 4.41 0.00 43.12 3.51
1734 1969 2.502142 AGCAGCATGACAAAGGATGA 57.498 45.000 0.00 0.00 39.69 2.92
1833 2068 9.468532 GAATTTGAAGTTCAAGCATCTTAAAGT 57.531 29.630 17.36 0.05 37.70 2.66
1905 2140 4.019860 TGACCTGAAGAAAGAGAAGGATGG 60.020 45.833 0.00 0.00 0.00 3.51
2055 2290 2.224402 ACAAGAGGAAGCTTCACCAGAC 60.224 50.000 27.02 9.24 0.00 3.51
2075 2310 6.169094 CAGACCAAGTCTATTTGTGATGAGT 58.831 40.000 0.00 0.00 41.37 3.41
2203 2496 9.979578 GATTGTCTATCAGATTTGTGAGAGTAT 57.020 33.333 0.13 0.00 37.14 2.12
2553 3058 1.336440 CTTCATTGTTGTTCACCGCCA 59.664 47.619 0.00 0.00 0.00 5.69
2601 3106 1.764854 ACCACCTCTTCACCACCGT 60.765 57.895 0.00 0.00 0.00 4.83
2763 3374 0.814812 GGAGTCGGAGGAGAGTACGG 60.815 65.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 5.303971 AGCTAGCTTACCTTTAGATGCATG 58.696 41.667 12.68 0.00 0.00 4.06
82 84 3.195661 AGAAAAGAAAACGAGTCGCACT 58.804 40.909 13.59 4.06 0.00 4.40
101 103 0.245539 GTGGGTCGATCGGTTTGAGA 59.754 55.000 16.41 0.00 0.00 3.27
103 105 1.294138 GGTGGGTCGATCGGTTTGA 59.706 57.895 16.41 0.00 0.00 2.69
140 142 2.629656 GCATGGTGGTGGTGCTGAC 61.630 63.158 0.00 0.00 36.02 3.51
141 143 2.282391 GCATGGTGGTGGTGCTGA 60.282 61.111 0.00 0.00 36.02 4.26
142 144 1.980232 ATGCATGGTGGTGGTGCTG 60.980 57.895 0.00 0.00 39.52 4.41
143 145 1.980232 CATGCATGGTGGTGGTGCT 60.980 57.895 19.40 0.00 39.52 4.40
144 146 2.574929 CATGCATGGTGGTGGTGC 59.425 61.111 19.40 0.00 39.26 5.01
145 147 1.609635 ATGCATGCATGGTGGTGGTG 61.610 55.000 31.74 0.94 35.03 4.17
146 148 1.305465 ATGCATGCATGGTGGTGGT 60.305 52.632 31.74 5.52 35.03 4.16
147 149 3.623806 ATGCATGCATGGTGGTGG 58.376 55.556 31.74 0.91 35.03 4.61
162 164 4.017126 AGATCCTCCAATATGCATGCATG 58.983 43.478 37.43 24.93 37.82 4.06
163 165 4.270834 GAGATCCTCCAATATGCATGCAT 58.729 43.478 33.92 33.92 40.19 3.96
164 166 3.682696 GAGATCCTCCAATATGCATGCA 58.317 45.455 25.04 25.04 0.00 3.96
177 179 3.630312 GTCACTACTCACTGGAGATCCTC 59.370 52.174 0.00 0.00 44.26 3.71
178 180 3.268334 AGTCACTACTCACTGGAGATCCT 59.732 47.826 0.00 0.00 44.26 3.24
179 181 3.380004 CAGTCACTACTCACTGGAGATCC 59.620 52.174 0.00 0.00 44.26 3.36
180 182 3.181491 GCAGTCACTACTCACTGGAGATC 60.181 52.174 0.00 0.00 44.26 2.75
181 183 2.757868 GCAGTCACTACTCACTGGAGAT 59.242 50.000 0.00 0.00 44.26 2.75
182 184 2.163509 GCAGTCACTACTCACTGGAGA 58.836 52.381 0.00 0.00 44.26 3.71
183 185 1.135546 CGCAGTCACTACTCACTGGAG 60.136 57.143 1.50 0.00 46.96 3.86
184 186 0.881796 CGCAGTCACTACTCACTGGA 59.118 55.000 1.50 0.00 40.45 3.86
185 187 0.109086 CCGCAGTCACTACTCACTGG 60.109 60.000 1.50 0.00 40.45 4.00
186 188 0.881796 TCCGCAGTCACTACTCACTG 59.118 55.000 0.00 0.00 42.61 3.66
187 189 1.617322 TTCCGCAGTCACTACTCACT 58.383 50.000 0.00 0.00 31.97 3.41
188 190 2.263077 CATTCCGCAGTCACTACTCAC 58.737 52.381 0.00 0.00 31.97 3.51
189 191 1.404181 GCATTCCGCAGTCACTACTCA 60.404 52.381 0.00 0.00 41.79 3.41
190 192 1.134965 AGCATTCCGCAGTCACTACTC 60.135 52.381 0.00 0.00 46.13 2.59
191 193 0.898320 AGCATTCCGCAGTCACTACT 59.102 50.000 0.00 0.00 46.13 2.57
192 194 2.159226 ACTAGCATTCCGCAGTCACTAC 60.159 50.000 0.00 0.00 46.13 2.73
193 195 2.099263 GACTAGCATTCCGCAGTCACTA 59.901 50.000 9.99 0.00 46.13 2.74
194 196 0.898320 ACTAGCATTCCGCAGTCACT 59.102 50.000 0.00 0.00 46.13 3.41
195 197 1.281899 GACTAGCATTCCGCAGTCAC 58.718 55.000 9.99 0.00 46.13 3.67
196 198 0.179137 CGACTAGCATTCCGCAGTCA 60.179 55.000 13.27 0.00 43.32 3.41
197 199 0.872021 CCGACTAGCATTCCGCAGTC 60.872 60.000 0.00 0.00 46.13 3.51
198 200 1.141881 CCGACTAGCATTCCGCAGT 59.858 57.895 0.00 0.00 46.13 4.40
199 201 0.872021 GTCCGACTAGCATTCCGCAG 60.872 60.000 0.00 0.00 46.13 5.18
200 202 1.141019 GTCCGACTAGCATTCCGCA 59.859 57.895 0.00 0.00 46.13 5.69
201 203 0.459585 TTGTCCGACTAGCATTCCGC 60.460 55.000 0.00 0.00 42.91 5.54
202 204 1.560923 CTTGTCCGACTAGCATTCCG 58.439 55.000 0.00 0.00 0.00 4.30
203 205 1.291132 GCTTGTCCGACTAGCATTCC 58.709 55.000 24.42 0.59 44.40 3.01
208 210 2.159226 AGTATGTGCTTGTCCGACTAGC 60.159 50.000 23.14 23.14 45.06 3.42
209 211 3.784701 AGTATGTGCTTGTCCGACTAG 57.215 47.619 5.70 5.70 0.00 2.57
210 212 4.267536 AGTAGTATGTGCTTGTCCGACTA 58.732 43.478 0.00 0.00 0.00 2.59
211 213 3.090037 AGTAGTATGTGCTTGTCCGACT 58.910 45.455 0.00 0.00 0.00 4.18
212 214 3.505464 AGTAGTATGTGCTTGTCCGAC 57.495 47.619 0.00 0.00 0.00 4.79
213 215 3.630769 CCTAGTAGTATGTGCTTGTCCGA 59.369 47.826 0.00 0.00 0.00 4.55
214 216 3.630769 TCCTAGTAGTATGTGCTTGTCCG 59.369 47.826 0.00 0.00 0.00 4.79
215 217 5.452077 CCTTCCTAGTAGTATGTGCTTGTCC 60.452 48.000 0.00 0.00 0.00 4.02
216 218 5.360144 TCCTTCCTAGTAGTATGTGCTTGTC 59.640 44.000 0.00 0.00 0.00 3.18
217 219 5.269991 TCCTTCCTAGTAGTATGTGCTTGT 58.730 41.667 0.00 0.00 0.00 3.16
218 220 5.361285 ACTCCTTCCTAGTAGTATGTGCTTG 59.639 44.000 0.00 0.00 0.00 4.01
219 221 5.361285 CACTCCTTCCTAGTAGTATGTGCTT 59.639 44.000 0.00 0.00 0.00 3.91
220 222 4.890581 CACTCCTTCCTAGTAGTATGTGCT 59.109 45.833 0.00 0.00 0.00 4.40
221 223 4.645588 ACACTCCTTCCTAGTAGTATGTGC 59.354 45.833 0.00 0.00 0.00 4.57
222 224 5.652891 ACACACTCCTTCCTAGTAGTATGTG 59.347 44.000 0.00 0.00 0.00 3.21
223 225 5.828871 ACACACTCCTTCCTAGTAGTATGT 58.171 41.667 0.00 0.00 0.00 2.29
224 226 7.055378 ACTACACACTCCTTCCTAGTAGTATG 58.945 42.308 0.00 0.00 38.95 2.39
225 227 7.210618 ACTACACACTCCTTCCTAGTAGTAT 57.789 40.000 0.00 0.00 38.95 2.12
226 228 6.633325 ACTACACACTCCTTCCTAGTAGTA 57.367 41.667 0.00 0.00 38.95 1.82
227 229 5.517620 ACTACACACTCCTTCCTAGTAGT 57.482 43.478 0.00 0.00 36.73 2.73
228 230 6.660094 AGAAACTACACACTCCTTCCTAGTAG 59.340 42.308 0.00 0.00 35.01 2.57
229 231 6.550163 AGAAACTACACACTCCTTCCTAGTA 58.450 40.000 0.00 0.00 0.00 1.82
230 232 5.395611 AGAAACTACACACTCCTTCCTAGT 58.604 41.667 0.00 0.00 0.00 2.57
231 233 5.986501 AGAAACTACACACTCCTTCCTAG 57.013 43.478 0.00 0.00 0.00 3.02
232 234 5.950549 CCTAGAAACTACACACTCCTTCCTA 59.049 44.000 0.00 0.00 0.00 2.94
233 235 4.773149 CCTAGAAACTACACACTCCTTCCT 59.227 45.833 0.00 0.00 0.00 3.36
234 236 4.621038 GCCTAGAAACTACACACTCCTTCC 60.621 50.000 0.00 0.00 0.00 3.46
235 237 4.021368 TGCCTAGAAACTACACACTCCTTC 60.021 45.833 0.00 0.00 0.00 3.46
236 238 3.901844 TGCCTAGAAACTACACACTCCTT 59.098 43.478 0.00 0.00 0.00 3.36
237 239 3.507411 TGCCTAGAAACTACACACTCCT 58.493 45.455 0.00 0.00 0.00 3.69
238 240 3.368531 CCTGCCTAGAAACTACACACTCC 60.369 52.174 0.00 0.00 0.00 3.85
239 241 3.510360 TCCTGCCTAGAAACTACACACTC 59.490 47.826 0.00 0.00 0.00 3.51
240 242 3.507411 TCCTGCCTAGAAACTACACACT 58.493 45.455 0.00 0.00 0.00 3.55
241 243 3.955650 TCCTGCCTAGAAACTACACAC 57.044 47.619 0.00 0.00 0.00 3.82
242 244 3.197766 CCATCCTGCCTAGAAACTACACA 59.802 47.826 0.00 0.00 0.00 3.72
243 245 3.451178 TCCATCCTGCCTAGAAACTACAC 59.549 47.826 0.00 0.00 0.00 2.90
244 246 3.451178 GTCCATCCTGCCTAGAAACTACA 59.549 47.826 0.00 0.00 0.00 2.74
245 247 3.181464 GGTCCATCCTGCCTAGAAACTAC 60.181 52.174 0.00 0.00 0.00 2.73
246 248 3.039011 GGTCCATCCTGCCTAGAAACTA 58.961 50.000 0.00 0.00 0.00 2.24
247 249 1.840635 GGTCCATCCTGCCTAGAAACT 59.159 52.381 0.00 0.00 0.00 2.66
248 250 1.559682 TGGTCCATCCTGCCTAGAAAC 59.440 52.381 0.00 0.00 37.07 2.78
249 251 1.965414 TGGTCCATCCTGCCTAGAAA 58.035 50.000 0.00 0.00 37.07 2.52
250 252 1.559682 GTTGGTCCATCCTGCCTAGAA 59.440 52.381 0.00 0.00 37.07 2.10
251 253 1.204146 GTTGGTCCATCCTGCCTAGA 58.796 55.000 0.00 0.00 37.07 2.43
252 254 1.134280 CAGTTGGTCCATCCTGCCTAG 60.134 57.143 6.22 0.00 37.07 3.02
253 255 0.911769 CAGTTGGTCCATCCTGCCTA 59.088 55.000 6.22 0.00 37.07 3.93
254 256 1.687612 CAGTTGGTCCATCCTGCCT 59.312 57.895 6.22 0.00 37.07 4.75
255 257 2.048603 GCAGTTGGTCCATCCTGCC 61.049 63.158 24.03 12.28 43.45 4.85
256 258 3.595819 GCAGTTGGTCCATCCTGC 58.404 61.111 21.67 21.67 42.94 4.85
257 259 0.037303 AGTGCAGTTGGTCCATCCTG 59.963 55.000 12.62 12.62 37.07 3.86
258 260 0.037303 CAGTGCAGTTGGTCCATCCT 59.963 55.000 0.00 0.00 37.07 3.24
259 261 1.589716 GCAGTGCAGTTGGTCCATCC 61.590 60.000 11.09 0.00 0.00 3.51
260 262 0.890542 TGCAGTGCAGTTGGTCCATC 60.891 55.000 15.37 0.00 33.32 3.51
261 263 1.151221 TGCAGTGCAGTTGGTCCAT 59.849 52.632 15.37 0.00 33.32 3.41
262 264 1.823470 GTGCAGTGCAGTTGGTCCA 60.823 57.895 20.42 0.00 40.08 4.02
263 265 2.896801 CGTGCAGTGCAGTTGGTCC 61.897 63.158 20.42 3.57 40.08 4.46
264 266 2.633657 CGTGCAGTGCAGTTGGTC 59.366 61.111 20.42 4.39 40.08 4.02
265 267 3.585990 GCGTGCAGTGCAGTTGGT 61.586 61.111 20.42 0.00 40.08 3.67
266 268 4.332637 GGCGTGCAGTGCAGTTGG 62.333 66.667 20.42 9.46 40.08 3.77
267 269 1.904852 CTAGGCGTGCAGTGCAGTTG 61.905 60.000 20.42 12.72 40.08 3.16
268 270 1.669115 CTAGGCGTGCAGTGCAGTT 60.669 57.895 20.42 6.93 40.08 3.16
269 271 2.047844 CTAGGCGTGCAGTGCAGT 60.048 61.111 20.42 6.24 40.08 4.40
270 272 2.563050 TAGCTAGGCGTGCAGTGCAG 62.563 60.000 20.42 13.74 40.08 4.41
271 273 2.563050 CTAGCTAGGCGTGCAGTGCA 62.563 60.000 15.37 15.37 35.60 4.57
272 274 1.880340 CTAGCTAGGCGTGCAGTGC 60.880 63.158 13.32 8.58 0.00 4.40
273 275 1.880340 GCTAGCTAGGCGTGCAGTG 60.880 63.158 22.10 0.00 33.60 3.66
274 276 2.010582 GAGCTAGCTAGGCGTGCAGT 62.011 60.000 19.38 0.00 35.13 4.40
275 277 1.299773 GAGCTAGCTAGGCGTGCAG 60.300 63.158 19.38 0.00 35.13 4.41
276 278 2.786495 GGAGCTAGCTAGGCGTGCA 61.786 63.158 19.38 0.00 35.13 4.57
277 279 2.028337 GGAGCTAGCTAGGCGTGC 59.972 66.667 19.38 8.31 34.52 5.34
278 280 2.333225 CGGAGCTAGCTAGGCGTG 59.667 66.667 19.38 0.00 34.52 5.34
291 293 3.718815 GTTACAAAGATAGAGGGCGGAG 58.281 50.000 0.00 0.00 0.00 4.63
292 294 2.100252 CGTTACAAAGATAGAGGGCGGA 59.900 50.000 0.00 0.00 0.00 5.54
293 295 2.470821 CGTTACAAAGATAGAGGGCGG 58.529 52.381 0.00 0.00 0.00 6.13
294 296 1.859080 GCGTTACAAAGATAGAGGGCG 59.141 52.381 0.00 0.00 0.00 6.13
295 297 2.901249 TGCGTTACAAAGATAGAGGGC 58.099 47.619 0.00 0.00 0.00 5.19
296 298 3.736252 CGATGCGTTACAAAGATAGAGGG 59.264 47.826 0.00 0.00 0.00 4.30
297 299 4.441415 GTCGATGCGTTACAAAGATAGAGG 59.559 45.833 0.00 0.00 0.00 3.69
298 300 4.441415 GGTCGATGCGTTACAAAGATAGAG 59.559 45.833 0.00 0.00 0.00 2.43
299 301 4.357142 GGTCGATGCGTTACAAAGATAGA 58.643 43.478 0.00 0.00 0.00 1.98
300 302 3.489785 GGGTCGATGCGTTACAAAGATAG 59.510 47.826 0.00 0.00 0.00 2.08
301 303 3.450578 GGGTCGATGCGTTACAAAGATA 58.549 45.455 0.00 0.00 0.00 1.98
302 304 2.277084 GGGTCGATGCGTTACAAAGAT 58.723 47.619 0.00 0.00 0.00 2.40
303 305 1.673626 GGGGTCGATGCGTTACAAAGA 60.674 52.381 0.00 0.00 0.00 2.52
304 306 0.725117 GGGGTCGATGCGTTACAAAG 59.275 55.000 0.00 0.00 0.00 2.77
305 307 0.035036 TGGGGTCGATGCGTTACAAA 59.965 50.000 0.00 0.00 0.00 2.83
306 308 0.250793 ATGGGGTCGATGCGTTACAA 59.749 50.000 0.00 0.00 0.00 2.41
307 309 0.179094 GATGGGGTCGATGCGTTACA 60.179 55.000 0.00 0.00 0.00 2.41
308 310 2.601562 GATGGGGTCGATGCGTTAC 58.398 57.895 0.00 0.00 0.00 2.50
318 320 1.209504 TGAGATTGTTCCGATGGGGTC 59.790 52.381 0.00 0.00 37.00 4.46
319 321 1.285280 TGAGATTGTTCCGATGGGGT 58.715 50.000 0.00 0.00 37.00 4.95
320 322 2.418368 TTGAGATTGTTCCGATGGGG 57.582 50.000 0.00 0.00 37.02 4.96
321 323 3.494626 CGTATTGAGATTGTTCCGATGGG 59.505 47.826 0.00 0.00 0.00 4.00
322 324 3.059597 GCGTATTGAGATTGTTCCGATGG 60.060 47.826 0.00 0.00 0.00 3.51
323 325 3.555547 TGCGTATTGAGATTGTTCCGATG 59.444 43.478 0.00 0.00 0.00 3.84
324 326 3.792401 TGCGTATTGAGATTGTTCCGAT 58.208 40.909 0.00 0.00 0.00 4.18
325 327 3.239587 TGCGTATTGAGATTGTTCCGA 57.760 42.857 0.00 0.00 0.00 4.55
326 328 5.163953 GGATATGCGTATTGAGATTGTTCCG 60.164 44.000 0.00 0.00 0.00 4.30
327 329 5.700832 TGGATATGCGTATTGAGATTGTTCC 59.299 40.000 0.00 0.00 0.00 3.62
328 330 6.202762 TGTGGATATGCGTATTGAGATTGTTC 59.797 38.462 0.00 0.00 0.00 3.18
329 331 6.017934 GTGTGGATATGCGTATTGAGATTGTT 60.018 38.462 0.00 0.00 0.00 2.83
330 332 5.466728 GTGTGGATATGCGTATTGAGATTGT 59.533 40.000 0.00 0.00 0.00 2.71
331 333 5.466393 TGTGTGGATATGCGTATTGAGATTG 59.534 40.000 0.00 0.00 0.00 2.67
332 334 5.610398 TGTGTGGATATGCGTATTGAGATT 58.390 37.500 0.00 0.00 0.00 2.40
333 335 5.213891 TGTGTGGATATGCGTATTGAGAT 57.786 39.130 0.00 0.00 0.00 2.75
334 336 4.664150 TGTGTGGATATGCGTATTGAGA 57.336 40.909 0.00 0.00 0.00 3.27
335 337 5.049828 TCTTGTGTGGATATGCGTATTGAG 58.950 41.667 0.00 0.00 0.00 3.02
336 338 5.017294 TCTTGTGTGGATATGCGTATTGA 57.983 39.130 0.00 0.00 0.00 2.57
337 339 5.049828 TCTCTTGTGTGGATATGCGTATTG 58.950 41.667 0.00 0.00 0.00 1.90
338 340 5.050490 GTCTCTTGTGTGGATATGCGTATT 58.950 41.667 0.00 0.00 0.00 1.89
339 341 4.342378 AGTCTCTTGTGTGGATATGCGTAT 59.658 41.667 0.00 0.00 0.00 3.06
340 342 3.699538 AGTCTCTTGTGTGGATATGCGTA 59.300 43.478 0.00 0.00 0.00 4.42
341 343 2.497675 AGTCTCTTGTGTGGATATGCGT 59.502 45.455 0.00 0.00 0.00 5.24
342 344 3.119291 GAGTCTCTTGTGTGGATATGCG 58.881 50.000 0.00 0.00 0.00 4.73
343 345 3.119291 CGAGTCTCTTGTGTGGATATGC 58.881 50.000 0.00 0.00 0.00 3.14
344 346 4.639135 TCGAGTCTCTTGTGTGGATATG 57.361 45.455 0.00 0.00 0.00 1.78
345 347 4.440802 GCTTCGAGTCTCTTGTGTGGATAT 60.441 45.833 0.00 0.00 0.00 1.63
346 348 3.119459 GCTTCGAGTCTCTTGTGTGGATA 60.119 47.826 0.00 0.00 0.00 2.59
347 349 2.353208 GCTTCGAGTCTCTTGTGTGGAT 60.353 50.000 0.00 0.00 0.00 3.41
348 350 1.000163 GCTTCGAGTCTCTTGTGTGGA 60.000 52.381 0.00 0.00 0.00 4.02
349 351 1.423395 GCTTCGAGTCTCTTGTGTGG 58.577 55.000 0.00 0.00 0.00 4.17
350 352 1.056103 CGCTTCGAGTCTCTTGTGTG 58.944 55.000 0.00 0.00 0.00 3.82
351 353 0.669077 ACGCTTCGAGTCTCTTGTGT 59.331 50.000 0.00 0.00 0.00 3.72
352 354 1.056103 CACGCTTCGAGTCTCTTGTG 58.944 55.000 0.00 0.00 0.00 3.33
353 355 0.664767 GCACGCTTCGAGTCTCTTGT 60.665 55.000 0.00 0.00 0.00 3.16
354 356 0.664466 TGCACGCTTCGAGTCTCTTG 60.664 55.000 0.00 0.00 0.00 3.02
355 357 0.032130 TTGCACGCTTCGAGTCTCTT 59.968 50.000 0.00 0.00 0.00 2.85
356 358 0.244994 ATTGCACGCTTCGAGTCTCT 59.755 50.000 0.00 0.00 0.00 3.10
357 359 0.368227 CATTGCACGCTTCGAGTCTC 59.632 55.000 0.00 0.00 0.00 3.36
358 360 1.630244 GCATTGCACGCTTCGAGTCT 61.630 55.000 3.15 0.00 0.00 3.24
359 361 1.225854 GCATTGCACGCTTCGAGTC 60.226 57.895 3.15 0.00 0.00 3.36
360 362 2.680913 GGCATTGCACGCTTCGAGT 61.681 57.895 11.39 0.00 0.00 4.18
361 363 2.099062 GGCATTGCACGCTTCGAG 59.901 61.111 11.39 0.00 0.00 4.04
362 364 3.787676 CGGCATTGCACGCTTCGA 61.788 61.111 11.39 0.00 0.00 3.71
363 365 3.099619 ATCGGCATTGCACGCTTCG 62.100 57.895 11.39 3.72 0.00 3.79
364 366 1.584483 CATCGGCATTGCACGCTTC 60.584 57.895 11.39 0.00 0.00 3.86
365 367 2.486504 CATCGGCATTGCACGCTT 59.513 55.556 11.39 0.91 0.00 4.68
366 368 4.183686 GCATCGGCATTGCACGCT 62.184 61.111 11.39 0.72 39.90 5.07
376 378 4.783621 TCCCTGCACTGCATCGGC 62.784 66.667 3.64 0.00 38.13 5.54
377 379 2.821366 GTCCCTGCACTGCATCGG 60.821 66.667 3.64 7.51 38.13 4.18
378 380 2.821366 GGTCCCTGCACTGCATCG 60.821 66.667 3.64 0.00 38.13 3.84
379 381 0.682209 AATGGTCCCTGCACTGCATC 60.682 55.000 3.64 0.00 38.13 3.91
380 382 0.251922 AAATGGTCCCTGCACTGCAT 60.252 50.000 3.64 0.00 38.13 3.96
381 383 0.403655 TAAATGGTCCCTGCACTGCA 59.596 50.000 3.11 3.11 36.92 4.41
382 384 1.098050 CTAAATGGTCCCTGCACTGC 58.902 55.000 0.00 0.00 0.00 4.40
383 385 2.359900 GTCTAAATGGTCCCTGCACTG 58.640 52.381 0.00 0.00 0.00 3.66
384 386 1.066143 CGTCTAAATGGTCCCTGCACT 60.066 52.381 0.00 0.00 0.00 4.40
385 387 1.066430 TCGTCTAAATGGTCCCTGCAC 60.066 52.381 0.00 0.00 0.00 4.57
386 388 1.271856 TCGTCTAAATGGTCCCTGCA 58.728 50.000 0.00 0.00 0.00 4.41
387 389 2.007608 GTTCGTCTAAATGGTCCCTGC 58.992 52.381 0.00 0.00 0.00 4.85
388 390 2.236395 AGGTTCGTCTAAATGGTCCCTG 59.764 50.000 0.00 0.00 0.00 4.45
389 391 2.547990 AGGTTCGTCTAAATGGTCCCT 58.452 47.619 0.00 0.00 0.00 4.20
390 392 3.181468 CCTAGGTTCGTCTAAATGGTCCC 60.181 52.174 0.00 0.00 0.00 4.46
391 393 3.450096 ACCTAGGTTCGTCTAAATGGTCC 59.550 47.826 9.21 0.00 0.00 4.46
392 394 4.732672 ACCTAGGTTCGTCTAAATGGTC 57.267 45.455 9.21 0.00 0.00 4.02
393 395 4.096984 CGTACCTAGGTTCGTCTAAATGGT 59.903 45.833 27.37 0.00 34.90 3.55
394 396 4.096984 ACGTACCTAGGTTCGTCTAAATGG 59.903 45.833 33.16 10.78 46.10 3.16
395 397 5.240713 ACGTACCTAGGTTCGTCTAAATG 57.759 43.478 33.16 15.79 46.10 2.32
396 398 6.038714 CCTTACGTACCTAGGTTCGTCTAAAT 59.961 42.308 39.14 22.32 46.10 1.40
397 399 5.354234 CCTTACGTACCTAGGTTCGTCTAAA 59.646 44.000 39.14 28.81 46.10 1.85
398 400 4.876107 CCTTACGTACCTAGGTTCGTCTAA 59.124 45.833 39.14 29.38 46.10 2.10
399 401 4.081087 ACCTTACGTACCTAGGTTCGTCTA 60.081 45.833 39.14 28.69 46.10 2.59
400 402 3.274288 CCTTACGTACCTAGGTTCGTCT 58.726 50.000 39.14 24.16 46.10 4.18
401 403 3.010420 ACCTTACGTACCTAGGTTCGTC 58.990 50.000 39.14 18.94 46.10 4.20
403 405 2.098117 CCACCTTACGTACCTAGGTTCG 59.902 54.545 31.94 31.94 40.24 3.95
404 406 2.159184 GCCACCTTACGTACCTAGGTTC 60.159 54.545 22.11 14.66 40.24 3.62
405 407 1.827344 GCCACCTTACGTACCTAGGTT 59.173 52.381 22.11 4.52 40.24 3.50
406 408 1.006400 AGCCACCTTACGTACCTAGGT 59.994 52.381 20.57 20.57 42.92 3.08
407 409 1.772836 AGCCACCTTACGTACCTAGG 58.227 55.000 7.41 7.41 35.14 3.02
408 410 2.289002 CGTAGCCACCTTACGTACCTAG 59.711 54.545 0.00 0.00 33.11 3.02
409 411 2.288666 CGTAGCCACCTTACGTACCTA 58.711 52.381 0.00 0.00 33.11 3.08
410 412 1.098050 CGTAGCCACCTTACGTACCT 58.902 55.000 0.00 0.00 33.11 3.08
411 413 3.629858 CGTAGCCACCTTACGTACC 57.370 57.895 0.00 0.00 33.11 3.34
429 431 1.889573 GGATGGAGCCACGCTTAGC 60.890 63.158 0.00 0.00 39.88 3.09
430 432 1.522092 TGGATGGAGCCACGCTTAG 59.478 57.895 0.00 0.00 39.88 2.18
431 433 3.720494 TGGATGGAGCCACGCTTA 58.280 55.556 0.00 0.00 39.88 3.09
437 439 2.910360 CCGATGTGGATGGAGCCA 59.090 61.111 0.00 0.00 42.00 4.75
438 440 2.592861 GCCGATGTGGATGGAGCC 60.593 66.667 0.00 0.00 42.00 4.70
439 441 2.592861 GGCCGATGTGGATGGAGC 60.593 66.667 0.00 0.00 42.00 4.70
440 442 2.280389 CGGCCGATGTGGATGGAG 60.280 66.667 24.07 0.00 42.00 3.86
441 443 4.545706 GCGGCCGATGTGGATGGA 62.546 66.667 33.48 0.00 42.00 3.41
443 445 4.854924 TGGCGGCCGATGTGGATG 62.855 66.667 33.48 0.00 42.00 3.51
444 446 4.552365 CTGGCGGCCGATGTGGAT 62.552 66.667 33.48 0.00 42.00 3.41
447 449 4.776322 TTCCTGGCGGCCGATGTG 62.776 66.667 33.48 14.35 0.00 3.21
448 450 4.473520 CTTCCTGGCGGCCGATGT 62.474 66.667 33.48 0.00 0.00 3.06
452 454 4.715523 TTTCCTTCCTGGCGGCCG 62.716 66.667 24.05 24.05 35.26 6.13
453 455 2.751837 CTTTCCTTCCTGGCGGCC 60.752 66.667 13.32 13.32 35.26 6.13
454 456 2.751837 CCTTTCCTTCCTGGCGGC 60.752 66.667 0.00 0.00 35.26 6.53
455 457 0.251165 TTTCCTTTCCTTCCTGGCGG 60.251 55.000 0.00 0.00 35.26 6.13
456 458 1.168714 CTTTCCTTTCCTTCCTGGCG 58.831 55.000 0.00 0.00 35.26 5.69
457 459 1.203063 ACCTTTCCTTTCCTTCCTGGC 60.203 52.381 0.00 0.00 35.26 4.85
458 460 2.158460 ACACCTTTCCTTTCCTTCCTGG 60.158 50.000 0.00 0.00 37.10 4.45
459 461 3.229697 ACACCTTTCCTTTCCTTCCTG 57.770 47.619 0.00 0.00 0.00 3.86
460 462 3.566351 CAACACCTTTCCTTTCCTTCCT 58.434 45.455 0.00 0.00 0.00 3.36
461 463 2.035961 GCAACACCTTTCCTTTCCTTCC 59.964 50.000 0.00 0.00 0.00 3.46
462 464 2.959030 AGCAACACCTTTCCTTTCCTTC 59.041 45.455 0.00 0.00 0.00 3.46
463 465 3.032265 AGCAACACCTTTCCTTTCCTT 57.968 42.857 0.00 0.00 0.00 3.36
464 466 2.755952 AGCAACACCTTTCCTTTCCT 57.244 45.000 0.00 0.00 0.00 3.36
465 467 3.305403 GCTTAGCAACACCTTTCCTTTCC 60.305 47.826 0.00 0.00 0.00 3.13
466 468 3.570125 AGCTTAGCAACACCTTTCCTTTC 59.430 43.478 7.07 0.00 0.00 2.62
467 469 3.566351 AGCTTAGCAACACCTTTCCTTT 58.434 40.909 7.07 0.00 0.00 3.11
468 470 3.229697 AGCTTAGCAACACCTTTCCTT 57.770 42.857 7.07 0.00 0.00 3.36
469 471 2.959465 AGCTTAGCAACACCTTTCCT 57.041 45.000 7.07 0.00 0.00 3.36
482 484 0.855349 CACGAATGGCGCTAGCTTAG 59.145 55.000 13.93 3.16 46.04 2.18
483 485 0.174845 ACACGAATGGCGCTAGCTTA 59.825 50.000 13.93 0.00 46.04 3.09
484 486 0.174845 TACACGAATGGCGCTAGCTT 59.825 50.000 13.93 0.00 46.04 3.74
485 487 0.174845 TTACACGAATGGCGCTAGCT 59.825 50.000 13.93 0.00 46.04 3.32
486 488 0.300789 GTTACACGAATGGCGCTAGC 59.699 55.000 7.64 4.06 46.04 3.42
487 489 0.928229 GGTTACACGAATGGCGCTAG 59.072 55.000 7.64 0.00 46.04 3.42
488 490 0.246910 TGGTTACACGAATGGCGCTA 59.753 50.000 7.64 0.00 46.04 4.26
489 491 0.604243 TTGGTTACACGAATGGCGCT 60.604 50.000 7.64 0.00 46.04 5.92
490 492 0.453782 GTTGGTTACACGAATGGCGC 60.454 55.000 0.00 0.00 46.04 6.53
492 494 1.240256 TGGTTGGTTACACGAATGGC 58.760 50.000 0.00 0.00 0.00 4.40
493 495 3.992260 TTTGGTTGGTTACACGAATGG 57.008 42.857 0.00 0.00 0.00 3.16
494 496 6.003234 TGTATTTGGTTGGTTACACGAATG 57.997 37.500 0.00 0.00 0.00 2.67
495 497 6.636562 TTGTATTTGGTTGGTTACACGAAT 57.363 33.333 0.00 0.00 0.00 3.34
496 498 6.262496 TCATTGTATTTGGTTGGTTACACGAA 59.738 34.615 0.00 0.00 0.00 3.85
497 499 5.763698 TCATTGTATTTGGTTGGTTACACGA 59.236 36.000 0.00 0.00 0.00 4.35
498 500 6.003234 TCATTGTATTTGGTTGGTTACACG 57.997 37.500 0.00 0.00 0.00 4.49
499 501 5.861787 GCTCATTGTATTTGGTTGGTTACAC 59.138 40.000 0.00 0.00 0.00 2.90
500 502 5.047660 GGCTCATTGTATTTGGTTGGTTACA 60.048 40.000 0.00 0.00 0.00 2.41
501 503 5.185056 AGGCTCATTGTATTTGGTTGGTTAC 59.815 40.000 0.00 0.00 0.00 2.50
502 504 5.329399 AGGCTCATTGTATTTGGTTGGTTA 58.671 37.500 0.00 0.00 0.00 2.85
503 505 4.159557 AGGCTCATTGTATTTGGTTGGTT 58.840 39.130 0.00 0.00 0.00 3.67
504 506 3.763897 GAGGCTCATTGTATTTGGTTGGT 59.236 43.478 10.25 0.00 0.00 3.67
505 507 3.131046 GGAGGCTCATTGTATTTGGTTGG 59.869 47.826 17.69 0.00 0.00 3.77
506 508 3.763360 TGGAGGCTCATTGTATTTGGTTG 59.237 43.478 17.69 0.00 0.00 3.77
507 509 4.046286 TGGAGGCTCATTGTATTTGGTT 57.954 40.909 17.69 0.00 0.00 3.67
508 510 3.737559 TGGAGGCTCATTGTATTTGGT 57.262 42.857 17.69 0.00 0.00 3.67
509 511 4.940463 CAATGGAGGCTCATTGTATTTGG 58.060 43.478 17.69 0.00 45.21 3.28
517 519 7.232127 CCAACTAATAATCAATGGAGGCTCATT 59.768 37.037 17.69 11.07 37.81 2.57
518 520 6.718454 CCAACTAATAATCAATGGAGGCTCAT 59.282 38.462 17.69 5.26 0.00 2.90
519 521 6.064060 CCAACTAATAATCAATGGAGGCTCA 58.936 40.000 17.69 2.84 0.00 4.26
520 522 6.064717 ACCAACTAATAATCAATGGAGGCTC 58.935 40.000 5.78 5.78 0.00 4.70
521 523 6.018433 ACCAACTAATAATCAATGGAGGCT 57.982 37.500 0.00 0.00 0.00 4.58
522 524 6.715347 AACCAACTAATAATCAATGGAGGC 57.285 37.500 0.00 0.00 0.00 4.70
523 525 8.980481 ACTAACCAACTAATAATCAATGGAGG 57.020 34.615 0.00 0.00 0.00 4.30
536 538 9.611284 CGCATATATACGTAACTAACCAACTAA 57.389 33.333 0.00 0.00 0.00 2.24
537 539 8.998377 TCGCATATATACGTAACTAACCAACTA 58.002 33.333 0.00 0.00 0.00 2.24
538 540 7.874940 TCGCATATATACGTAACTAACCAACT 58.125 34.615 0.00 0.00 0.00 3.16
539 541 8.679288 ATCGCATATATACGTAACTAACCAAC 57.321 34.615 0.00 0.00 0.00 3.77
540 542 9.345517 GAATCGCATATATACGTAACTAACCAA 57.654 33.333 0.00 0.00 0.00 3.67
541 543 7.693536 CGAATCGCATATATACGTAACTAACCA 59.306 37.037 0.00 0.00 0.00 3.67
542 544 7.693951 ACGAATCGCATATATACGTAACTAACC 59.306 37.037 1.15 0.00 0.00 2.85
543 545 8.510714 CACGAATCGCATATATACGTAACTAAC 58.489 37.037 1.15 0.00 0.00 2.34
544 546 8.229811 ACACGAATCGCATATATACGTAACTAA 58.770 33.333 1.15 0.00 0.00 2.24
545 547 7.742151 ACACGAATCGCATATATACGTAACTA 58.258 34.615 1.15 0.00 0.00 2.24
546 548 6.605849 ACACGAATCGCATATATACGTAACT 58.394 36.000 1.15 0.00 0.00 2.24
547 549 6.289719 CGACACGAATCGCATATATACGTAAC 60.290 42.308 1.15 0.00 34.90 2.50
548 550 5.729424 CGACACGAATCGCATATATACGTAA 59.271 40.000 1.15 0.00 34.90 3.18
549 551 5.250332 CGACACGAATCGCATATATACGTA 58.750 41.667 1.15 0.00 34.90 3.57
550 552 4.086574 CGACACGAATCGCATATATACGT 58.913 43.478 1.15 0.00 34.90 3.57
551 553 4.639240 CGACACGAATCGCATATATACG 57.361 45.455 1.15 0.00 34.90 3.06
567 569 2.645510 CCACGAACTGACGCGACAC 61.646 63.158 15.93 4.24 36.70 3.67
568 570 2.354188 CCACGAACTGACGCGACA 60.354 61.111 15.93 13.32 36.70 4.35
569 571 3.764049 GCCACGAACTGACGCGAC 61.764 66.667 15.93 7.62 36.70 5.19
570 572 3.776659 TTGCCACGAACTGACGCGA 62.777 57.895 15.93 0.00 36.70 5.87
571 573 3.334751 TTGCCACGAACTGACGCG 61.335 61.111 3.53 3.53 36.70 6.01
572 574 2.248431 GTTGCCACGAACTGACGC 59.752 61.111 0.00 0.00 36.70 5.19
573 575 1.157870 AAGGTTGCCACGAACTGACG 61.158 55.000 0.00 0.00 39.31 4.35
574 576 1.798813 CTAAGGTTGCCACGAACTGAC 59.201 52.381 0.00 0.00 0.00 3.51
575 577 1.876416 GCTAAGGTTGCCACGAACTGA 60.876 52.381 0.00 0.00 0.00 3.41
576 578 0.517316 GCTAAGGTTGCCACGAACTG 59.483 55.000 0.00 0.00 0.00 3.16
577 579 0.396811 AGCTAAGGTTGCCACGAACT 59.603 50.000 0.00 0.00 0.00 3.01
578 580 2.000447 CTAGCTAAGGTTGCCACGAAC 59.000 52.381 0.00 0.00 0.00 3.95
579 581 1.066430 CCTAGCTAAGGTTGCCACGAA 60.066 52.381 0.00 0.00 40.94 3.85
580 582 0.535335 CCTAGCTAAGGTTGCCACGA 59.465 55.000 0.00 0.00 40.94 4.35
581 583 0.535335 TCCTAGCTAAGGTTGCCACG 59.465 55.000 0.00 0.00 46.62 4.94
582 584 2.027100 ACTTCCTAGCTAAGGTTGCCAC 60.027 50.000 0.00 0.00 46.62 5.01
583 585 2.266279 ACTTCCTAGCTAAGGTTGCCA 58.734 47.619 0.00 0.00 46.62 4.92
584 586 3.451540 ACTACTTCCTAGCTAAGGTTGCC 59.548 47.826 0.00 0.00 46.62 4.52
585 587 4.739587 ACTACTTCCTAGCTAAGGTTGC 57.260 45.455 0.00 0.00 46.62 4.17
586 588 6.274579 GCTAACTACTTCCTAGCTAAGGTTG 58.725 44.000 0.00 0.00 46.62 3.77
587 589 5.067544 CGCTAACTACTTCCTAGCTAAGGTT 59.932 44.000 0.00 0.00 46.62 3.50
588 590 4.579753 CGCTAACTACTTCCTAGCTAAGGT 59.420 45.833 0.00 0.00 46.62 3.50
590 592 4.579753 ACCGCTAACTACTTCCTAGCTAAG 59.420 45.833 0.00 0.00 36.68 2.18
591 593 4.530875 ACCGCTAACTACTTCCTAGCTAA 58.469 43.478 0.00 0.00 36.68 3.09
592 594 4.162040 ACCGCTAACTACTTCCTAGCTA 57.838 45.455 0.00 0.00 36.68 3.32
593 595 3.015675 ACCGCTAACTACTTCCTAGCT 57.984 47.619 0.00 0.00 36.68 3.32
594 596 4.796369 CATACCGCTAACTACTTCCTAGC 58.204 47.826 0.00 0.00 35.69 3.42
595 597 4.277672 TGCATACCGCTAACTACTTCCTAG 59.722 45.833 0.00 0.00 43.06 3.02
596 598 4.209538 TGCATACCGCTAACTACTTCCTA 58.790 43.478 0.00 0.00 43.06 2.94
597 599 3.028850 TGCATACCGCTAACTACTTCCT 58.971 45.455 0.00 0.00 43.06 3.36
598 600 3.447918 TGCATACCGCTAACTACTTCC 57.552 47.619 0.00 0.00 43.06 3.46
599 601 4.872664 AGATGCATACCGCTAACTACTTC 58.127 43.478 0.00 0.00 43.06 3.01
600 602 4.262079 GGAGATGCATACCGCTAACTACTT 60.262 45.833 0.00 0.00 43.06 2.24
601 603 3.256136 GGAGATGCATACCGCTAACTACT 59.744 47.826 0.00 0.00 43.06 2.57
602 604 3.256136 AGGAGATGCATACCGCTAACTAC 59.744 47.826 0.00 0.00 43.06 2.73
603 605 3.255888 CAGGAGATGCATACCGCTAACTA 59.744 47.826 0.00 0.00 43.06 2.24
604 606 2.036475 CAGGAGATGCATACCGCTAACT 59.964 50.000 0.00 0.00 43.06 2.24
605 607 2.408050 CAGGAGATGCATACCGCTAAC 58.592 52.381 0.00 0.00 43.06 2.34
606 608 2.820059 CAGGAGATGCATACCGCTAA 57.180 50.000 0.00 0.00 43.06 3.09
617 619 1.809271 CGTCCCAATGAGCAGGAGATG 60.809 57.143 0.00 0.00 0.00 2.90
618 620 0.467384 CGTCCCAATGAGCAGGAGAT 59.533 55.000 0.00 0.00 0.00 2.75
619 621 0.614697 TCGTCCCAATGAGCAGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
620 622 0.250234 TTCGTCCCAATGAGCAGGAG 59.750 55.000 0.00 0.00 0.00 3.69
621 623 0.690192 TTTCGTCCCAATGAGCAGGA 59.310 50.000 0.00 0.00 0.00 3.86
622 624 0.804989 GTTTCGTCCCAATGAGCAGG 59.195 55.000 0.00 0.00 0.00 4.85
623 625 0.443869 CGTTTCGTCCCAATGAGCAG 59.556 55.000 0.00 0.00 0.00 4.24
624 626 0.953471 CCGTTTCGTCCCAATGAGCA 60.953 55.000 0.00 0.00 0.00 4.26
625 627 0.672401 TCCGTTTCGTCCCAATGAGC 60.672 55.000 0.00 0.00 0.00 4.26
626 628 1.067142 TCTCCGTTTCGTCCCAATGAG 60.067 52.381 0.00 0.00 0.00 2.90
627 629 0.970640 TCTCCGTTTCGTCCCAATGA 59.029 50.000 0.00 0.00 0.00 2.57
628 630 1.337823 ACTCTCCGTTTCGTCCCAATG 60.338 52.381 0.00 0.00 0.00 2.82
629 631 0.974383 ACTCTCCGTTTCGTCCCAAT 59.026 50.000 0.00 0.00 0.00 3.16
630 632 0.032952 CACTCTCCGTTTCGTCCCAA 59.967 55.000 0.00 0.00 0.00 4.12
631 633 0.824595 TCACTCTCCGTTTCGTCCCA 60.825 55.000 0.00 0.00 0.00 4.37
632 634 0.316204 TTCACTCTCCGTTTCGTCCC 59.684 55.000 0.00 0.00 0.00 4.46
633 635 2.365408 ATTCACTCTCCGTTTCGTCC 57.635 50.000 0.00 0.00 0.00 4.79
634 636 2.159827 GCAATTCACTCTCCGTTTCGTC 60.160 50.000 0.00 0.00 0.00 4.20
635 637 1.798813 GCAATTCACTCTCCGTTTCGT 59.201 47.619 0.00 0.00 0.00 3.85
636 638 1.798223 TGCAATTCACTCTCCGTTTCG 59.202 47.619 0.00 0.00 0.00 3.46
637 639 3.498397 TCTTGCAATTCACTCTCCGTTTC 59.502 43.478 0.00 0.00 0.00 2.78
638 640 3.476552 TCTTGCAATTCACTCTCCGTTT 58.523 40.909 0.00 0.00 0.00 3.60
639 641 3.126001 TCTTGCAATTCACTCTCCGTT 57.874 42.857 0.00 0.00 0.00 4.44
640 642 2.839486 TCTTGCAATTCACTCTCCGT 57.161 45.000 0.00 0.00 0.00 4.69
641 643 3.365364 GGTTTCTTGCAATTCACTCTCCG 60.365 47.826 0.00 0.00 0.00 4.63
642 644 3.569701 TGGTTTCTTGCAATTCACTCTCC 59.430 43.478 0.00 0.00 0.00 3.71
760 762 2.574212 CCGCGCGAAATCACTTGC 60.574 61.111 34.63 0.00 0.00 4.01
931 933 2.579249 CAGAGAGAGCGAGCGTGC 60.579 66.667 0.00 0.00 0.00 5.34
998 1021 0.977627 ATCGCTCCAGGACACCATGA 60.978 55.000 0.00 0.00 0.00 3.07
1082 1105 4.405116 ACACAAATGAGCAACATGGTTT 57.595 36.364 0.00 0.00 39.39 3.27
1087 1110 4.460382 CCCTAGAACACAAATGAGCAACAT 59.540 41.667 0.00 0.00 41.45 2.71
1163 1190 5.569428 CGGATCATCAATTGTAGCTGGGATA 60.569 44.000 5.13 0.00 0.00 2.59
1528 1762 3.319972 GGCATGCCATCTTGTTATCATGT 59.680 43.478 32.08 0.00 35.17 3.21
1705 1940 1.068748 GTCATGCTGCTTTCCACACAG 60.069 52.381 0.00 0.00 34.48 3.66
1734 1969 5.950549 ACAGCCTTCAATTTCTTGATCTCAT 59.049 36.000 0.00 0.00 40.95 2.90
1833 2068 4.422073 TCAGAGCTCAACTTTTCCTTCA 57.578 40.909 17.77 0.00 0.00 3.02
1905 2140 4.574421 GCTTATCCTTCTCTTTCTTCAGGC 59.426 45.833 0.00 0.00 0.00 4.85
2055 2290 9.307121 CTTAGTACTCATCACAAATAGACTTGG 57.693 37.037 0.00 0.00 0.00 3.61
2075 2310 4.573201 GTCAGCCAACAACACAACTTAGTA 59.427 41.667 0.00 0.00 0.00 1.82
2291 2692 7.255906 GCTATCTATGTCAGGCTATCTATGCAT 60.256 40.741 3.79 3.79 0.00 3.96
2336 2766 7.228906 TGCAGGTACTATCTATGTCAGTTCTAC 59.771 40.741 0.00 0.00 36.02 2.59
2553 3058 1.679898 CGGCCAAGAAGAAGAGGGT 59.320 57.895 2.24 0.00 0.00 4.34
2580 3085 1.705997 GGTGGTGAAGAGGTGGTGGT 61.706 60.000 0.00 0.00 0.00 4.16
2601 3106 2.329267 TGTCAAGCAAGAAGAGGAGGA 58.671 47.619 0.00 0.00 0.00 3.71
2763 3374 4.477975 CGAGGTGGACGAGGTCGC 62.478 72.222 0.00 0.00 44.43 5.19
2967 3596 4.457496 CCGCTCATCCACCACGCT 62.457 66.667 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.