Multiple sequence alignment - TraesCS7B01G187300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G187300 chr7B 100.000 2194 0 0 662 2855 313773807 313771614 0.000000e+00 4052
1 TraesCS7B01G187300 chr7B 100.000 278 0 0 1 278 313774468 313774191 5.450000e-142 514
2 TraesCS7B01G187300 chr7B 89.655 145 9 4 11 149 407201360 407201216 2.260000e-41 180
3 TraesCS7B01G187300 chr7D 97.687 1254 23 2 662 1909 368809133 368810386 0.000000e+00 2150
4 TraesCS7B01G187300 chr7D 94.482 598 25 3 2262 2855 368811090 368811683 0.000000e+00 915
5 TraesCS7B01G187300 chr7D 95.225 356 13 1 1910 2265 368810418 368810769 6.910000e-156 560
6 TraesCS7B01G187300 chr7D 97.727 132 3 0 147 278 368808936 368809067 7.960000e-56 228
7 TraesCS7B01G187300 chr7A 98.298 999 17 0 911 1909 408688352 408689350 0.000000e+00 1751
8 TraesCS7B01G187300 chr7A 91.667 960 39 8 1910 2855 408689382 408690314 0.000000e+00 1291
9 TraesCS7B01G187300 chr7A 95.420 262 6 2 662 917 408684796 408685057 2.050000e-111 412
10 TraesCS7B01G187300 chr7A 98.485 132 2 0 147 278 408684599 408684730 1.710000e-57 233
11 TraesCS7B01G187300 chr4A 92.414 145 11 0 11 155 650308958 650308814 1.040000e-49 207
12 TraesCS7B01G187300 chr1B 92.086 139 11 0 11 149 29917688 29917826 2.240000e-46 196
13 TraesCS7B01G187300 chr4D 90.278 144 14 0 5 148 459257622 459257765 3.750000e-44 189
14 TraesCS7B01G187300 chr3B 91.304 138 12 0 11 148 771777088 771777225 3.750000e-44 189
15 TraesCS7B01G187300 chr2B 89.655 145 15 0 5 149 249621939 249622083 4.860000e-43 185
16 TraesCS7B01G187300 chr2D 90.580 138 13 0 10 147 503580914 503580777 1.750000e-42 183
17 TraesCS7B01G187300 chr2D 88.356 146 16 1 5 149 503582326 503582471 1.050000e-39 174
18 TraesCS7B01G187300 chr3D 88.667 150 16 1 5 153 260971198 260971049 6.280000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G187300 chr7B 313771614 313774468 2854 True 2283.00 4052 100.00000 1 2855 2 chr7B.!!$R2 2854
1 TraesCS7B01G187300 chr7D 368808936 368811683 2747 False 963.25 2150 96.28025 147 2855 4 chr7D.!!$F1 2708
2 TraesCS7B01G187300 chr7A 408684599 408690314 5715 False 921.75 1751 95.96750 147 2855 4 chr7A.!!$F1 2708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.108992 TAGGCACTAAACTGACCGCG 60.109 55.0 0.0 0.0 38.39 6.46 F
746 748 0.466555 TTTTCTTCCCACCCCACACG 60.467 55.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 5057 0.955919 GCAGGTTGAAGAACGGGAGG 60.956 60.0 0.0 0.0 32.28 4.30 R
2692 6369 0.321671 CTGTTCGCTCTTTCCCCAGA 59.678 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.805231 CCACACGATACGGCGGCA 62.805 66.667 13.24 0.00 35.12 5.69
21 22 2.584970 CACACGATACGGCGGCAT 60.585 61.111 13.24 3.47 35.12 4.40
22 23 1.299544 CACACGATACGGCGGCATA 60.300 57.895 13.24 0.00 35.12 3.14
23 24 1.299620 ACACGATACGGCGGCATAC 60.300 57.895 13.24 0.00 35.12 2.39
25 26 2.050714 CGATACGGCGGCATACGT 60.051 61.111 13.24 5.09 46.52 3.57
26 27 2.078914 CGATACGGCGGCATACGTC 61.079 63.158 13.24 0.00 46.52 4.34
31 32 2.335369 GGCGGCATACGTCGAGAT 59.665 61.111 3.07 0.00 45.23 2.75
32 33 2.016704 GGCGGCATACGTCGAGATG 61.017 63.158 3.07 3.35 45.23 2.90
33 34 2.649257 GCGGCATACGTCGAGATGC 61.649 63.158 21.08 21.08 45.23 3.91
37 38 0.705094 GCATACGTCGAGATGCATCG 59.295 55.000 20.67 12.22 46.29 3.84
38 39 1.926386 GCATACGTCGAGATGCATCGT 60.926 52.381 20.67 16.95 46.29 3.73
39 40 2.664698 GCATACGTCGAGATGCATCGTA 60.665 50.000 20.67 18.48 46.29 3.43
40 41 3.748298 CATACGTCGAGATGCATCGTAT 58.252 45.455 20.67 19.77 44.61 3.06
41 42 2.776312 ACGTCGAGATGCATCGTATT 57.224 45.000 20.67 3.25 43.20 1.89
42 43 3.079960 ACGTCGAGATGCATCGTATTT 57.920 42.857 20.67 2.83 43.20 1.40
43 44 2.789339 ACGTCGAGATGCATCGTATTTG 59.211 45.455 20.67 12.55 43.20 2.32
44 45 3.042887 CGTCGAGATGCATCGTATTTGA 58.957 45.455 20.67 9.95 43.20 2.69
45 46 3.485743 CGTCGAGATGCATCGTATTTGAA 59.514 43.478 20.67 0.00 43.20 2.69
46 47 4.604043 CGTCGAGATGCATCGTATTTGAAC 60.604 45.833 20.67 10.43 43.20 3.18
47 48 3.485743 TCGAGATGCATCGTATTTGAACG 59.514 43.478 20.67 14.57 43.20 3.95
48 49 3.535860 GAGATGCATCGTATTTGAACGC 58.464 45.455 20.67 0.00 42.56 4.84
49 50 2.287915 AGATGCATCGTATTTGAACGCC 59.712 45.455 20.67 0.00 42.56 5.68
50 51 1.732941 TGCATCGTATTTGAACGCCT 58.267 45.000 0.00 0.00 42.56 5.52
51 52 2.894902 TGCATCGTATTTGAACGCCTA 58.105 42.857 0.00 0.00 42.56 3.93
52 53 2.863740 TGCATCGTATTTGAACGCCTAG 59.136 45.455 0.00 0.00 42.56 3.02
53 54 3.120792 GCATCGTATTTGAACGCCTAGA 58.879 45.455 0.00 0.00 42.56 2.43
54 55 3.060473 GCATCGTATTTGAACGCCTAGAC 60.060 47.826 0.00 0.00 42.56 2.59
55 56 3.853831 TCGTATTTGAACGCCTAGACA 57.146 42.857 0.00 0.00 42.56 3.41
56 57 4.177165 TCGTATTTGAACGCCTAGACAA 57.823 40.909 0.00 0.00 42.56 3.18
57 58 4.171005 TCGTATTTGAACGCCTAGACAAG 58.829 43.478 0.00 0.00 42.56 3.16
58 59 3.924686 CGTATTTGAACGCCTAGACAAGT 59.075 43.478 0.00 0.00 35.87 3.16
59 60 4.387862 CGTATTTGAACGCCTAGACAAGTT 59.612 41.667 0.00 0.00 35.87 2.66
60 61 5.574055 CGTATTTGAACGCCTAGACAAGTTA 59.426 40.000 0.00 0.00 35.87 2.24
61 62 6.255020 CGTATTTGAACGCCTAGACAAGTTAT 59.745 38.462 0.00 0.00 35.87 1.89
62 63 5.856126 TTTGAACGCCTAGACAAGTTATG 57.144 39.130 0.00 0.00 0.00 1.90
63 64 3.857052 TGAACGCCTAGACAAGTTATGG 58.143 45.455 0.00 0.00 0.00 2.74
64 65 2.311124 ACGCCTAGACAAGTTATGGC 57.689 50.000 0.00 0.00 37.30 4.40
65 66 1.553248 ACGCCTAGACAAGTTATGGCA 59.447 47.619 0.00 0.00 40.75 4.92
66 67 2.170607 ACGCCTAGACAAGTTATGGCAT 59.829 45.455 4.88 4.88 40.75 4.40
67 68 3.206150 CGCCTAGACAAGTTATGGCATT 58.794 45.455 4.78 0.00 40.75 3.56
68 69 4.141801 ACGCCTAGACAAGTTATGGCATTA 60.142 41.667 4.78 0.00 40.75 1.90
69 70 4.211374 CGCCTAGACAAGTTATGGCATTAC 59.789 45.833 4.78 6.96 40.75 1.89
70 71 5.368989 GCCTAGACAAGTTATGGCATTACT 58.631 41.667 13.05 13.05 40.75 2.24
71 72 5.823045 GCCTAGACAAGTTATGGCATTACTT 59.177 40.000 22.34 22.34 40.75 2.24
72 73 6.318900 GCCTAGACAAGTTATGGCATTACTTT 59.681 38.462 24.69 17.22 40.75 2.66
73 74 7.148069 GCCTAGACAAGTTATGGCATTACTTTT 60.148 37.037 24.69 20.11 40.75 2.27
74 75 8.184192 CCTAGACAAGTTATGGCATTACTTTTG 58.816 37.037 24.69 18.91 40.75 2.44
75 76 7.524717 AGACAAGTTATGGCATTACTTTTGT 57.475 32.000 24.69 21.48 40.75 2.83
76 77 7.370383 AGACAAGTTATGGCATTACTTTTGTG 58.630 34.615 24.69 18.02 40.75 3.33
77 78 7.014230 AGACAAGTTATGGCATTACTTTTGTGT 59.986 33.333 24.69 20.58 40.75 3.72
78 79 8.172352 ACAAGTTATGGCATTACTTTTGTGTA 57.828 30.769 24.69 0.00 30.08 2.90
79 80 8.802267 ACAAGTTATGGCATTACTTTTGTGTAT 58.198 29.630 24.69 3.67 30.08 2.29
80 81 9.638239 CAAGTTATGGCATTACTTTTGTGTATT 57.362 29.630 24.69 3.02 30.08 1.89
86 87 8.948631 TGGCATTACTTTTGTGTATTTTTCAA 57.051 26.923 0.00 0.00 0.00 2.69
87 88 9.039870 TGGCATTACTTTTGTGTATTTTTCAAG 57.960 29.630 0.00 0.00 0.00 3.02
88 89 9.040939 GGCATTACTTTTGTGTATTTTTCAAGT 57.959 29.630 0.00 0.00 0.00 3.16
94 95 9.093970 ACTTTTGTGTATTTTTCAAGTTTAGGC 57.906 29.630 0.00 0.00 0.00 3.93
95 96 9.092876 CTTTTGTGTATTTTTCAAGTTTAGGCA 57.907 29.630 0.00 0.00 0.00 4.75
96 97 7.995463 TTGTGTATTTTTCAAGTTTAGGCAC 57.005 32.000 0.00 0.00 0.00 5.01
97 98 7.341445 TGTGTATTTTTCAAGTTTAGGCACT 57.659 32.000 0.00 0.00 46.37 4.40
98 99 8.453238 TGTGTATTTTTCAAGTTTAGGCACTA 57.547 30.769 0.00 0.00 41.75 2.74
108 109 3.826637 TAGGCACTAAACTGACCGC 57.173 52.632 0.00 0.00 38.39 5.68
109 110 0.108992 TAGGCACTAAACTGACCGCG 60.109 55.000 0.00 0.00 38.39 6.46
110 111 2.474712 GCACTAAACTGACCGCGC 59.525 61.111 0.00 0.00 0.00 6.86
111 112 3.023591 GCACTAAACTGACCGCGCC 62.024 63.158 0.00 0.00 0.00 6.53
112 113 2.431942 ACTAAACTGACCGCGCCG 60.432 61.111 0.00 0.00 0.00 6.46
123 124 3.186047 CGCGCCGGACAACTTAGG 61.186 66.667 5.05 0.00 0.00 2.69
124 125 2.818274 GCGCCGGACAACTTAGGG 60.818 66.667 5.05 0.00 0.00 3.53
125 126 2.818274 CGCCGGACAACTTAGGGC 60.818 66.667 5.05 0.00 40.36 5.19
126 127 2.349755 GCCGGACAACTTAGGGCA 59.650 61.111 5.05 0.00 43.23 5.36
127 128 2.038837 GCCGGACAACTTAGGGCAC 61.039 63.158 5.05 0.00 43.23 5.01
257 258 1.680735 CCATCTCCTCTCTCCTCAACG 59.319 57.143 0.00 0.00 0.00 4.10
685 686 5.897050 TCAACAAGGATAAACAACCACAAC 58.103 37.500 0.00 0.00 0.00 3.32
746 748 0.466555 TTTTCTTCCCACCCCACACG 60.467 55.000 0.00 0.00 0.00 4.49
888 895 0.514691 GCACCACTTCTTCTCTTGCG 59.485 55.000 0.00 0.00 0.00 4.85
1476 4784 1.298667 GTCCCTTGCCGGCTCTTTA 59.701 57.895 29.70 2.88 0.00 1.85
1548 4856 3.580319 GGGCAGGGTCAGGTGGTT 61.580 66.667 0.00 0.00 0.00 3.67
1855 5163 2.227089 GAGGCCACCGTTCTCGTGAT 62.227 60.000 5.01 0.00 35.01 3.06
2038 5377 9.862371 TTTGTTTAATTGGAATATATGTTGCGT 57.138 25.926 0.00 0.00 0.00 5.24
2106 5445 6.271488 TCATTCTTGGAATGGTTTGATGAC 57.729 37.500 16.84 0.00 0.00 3.06
2171 5510 1.375908 TGCTAACGGCCAGCTCAAG 60.376 57.895 14.14 0.00 39.83 3.02
2175 5514 1.667724 CTAACGGCCAGCTCAAGATTG 59.332 52.381 2.24 0.00 0.00 2.67
2248 5592 2.934364 GCAGCTAGATCCATCGATTGGG 60.934 54.545 12.17 4.98 46.45 4.12
2322 5999 1.408702 TGCTTGCACTTGGTTTTCCTC 59.591 47.619 0.00 0.00 41.38 3.71
2334 6011 6.324770 ACTTGGTTTTCCTCTCATTTGTTGAT 59.675 34.615 0.00 0.00 41.38 2.57
2377 6054 3.627123 TCGCATCTGGATGTTTACAATGG 59.373 43.478 11.52 0.00 40.80 3.16
2421 6098 4.811969 TCTACAACGAATCCCAGCTTAA 57.188 40.909 0.00 0.00 0.00 1.85
2422 6099 5.353394 TCTACAACGAATCCCAGCTTAAT 57.647 39.130 0.00 0.00 0.00 1.40
2423 6100 5.357257 TCTACAACGAATCCCAGCTTAATC 58.643 41.667 0.00 0.00 0.00 1.75
2424 6101 2.936498 ACAACGAATCCCAGCTTAATCG 59.064 45.455 0.00 0.00 36.45 3.34
2466 6143 6.316390 ACTTTTTCTTGCGGAGTCCTTATATG 59.684 38.462 7.77 0.00 0.00 1.78
2521 6198 9.019656 TGTTCTTAATTAGCCAATTAGCAAAGA 57.980 29.630 0.00 0.00 37.78 2.52
2532 6209 7.286316 AGCCAATTAGCAAAGAACAGCTATATT 59.714 33.333 0.00 0.00 42.39 1.28
2559 6236 4.302004 TCCTATTCCCTGATCCTCCTTT 57.698 45.455 0.00 0.00 0.00 3.11
2567 6244 4.018960 TCCCTGATCCTCCTTTTCTTCAAG 60.019 45.833 0.00 0.00 0.00 3.02
2706 6383 1.475403 TAGACTCTGGGGAAAGAGCG 58.525 55.000 1.17 0.00 46.46 5.03
2733 6410 1.005450 TGGGGTAGAACATTGCTTCCC 59.995 52.381 0.00 0.00 40.98 3.97
2766 6443 8.355913 ACTTTAAGCTTGATTTCTCTCAAAAGG 58.644 33.333 9.86 0.00 34.86 3.11
2813 6490 7.555554 AGATTAGCTAATCAGTGTGCAAAGAAT 59.444 33.333 36.14 16.05 43.43 2.40
2824 6501 3.254166 TGTGCAAAGAATGAAGAAGAGGC 59.746 43.478 0.00 0.00 0.00 4.70
2838 6515 7.044181 TGAAGAAGAGGCTTACTTCATGTATG 58.956 38.462 19.86 0.00 44.01 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.686956 TATGCCGCCGTATCGTGTGG 62.687 60.000 0.00 0.00 33.33 4.17
4 5 1.299544 TATGCCGCCGTATCGTGTG 60.300 57.895 0.00 0.00 0.00 3.82
5 6 1.299620 GTATGCCGCCGTATCGTGT 60.300 57.895 0.00 0.00 0.00 4.49
6 7 2.362047 CGTATGCCGCCGTATCGTG 61.362 63.158 0.00 0.00 0.00 4.35
7 8 2.050714 CGTATGCCGCCGTATCGT 60.051 61.111 0.00 0.00 0.00 3.73
8 9 2.050714 ACGTATGCCGCCGTATCG 60.051 61.111 0.00 0.00 41.42 2.92
9 10 2.078914 CGACGTATGCCGCCGTATC 61.079 63.158 0.00 0.00 37.67 2.24
10 11 2.050714 CGACGTATGCCGCCGTAT 60.051 61.111 0.00 0.00 37.67 3.06
11 12 3.172099 CTCGACGTATGCCGCCGTA 62.172 63.158 0.00 0.00 43.30 4.02
12 13 4.547905 CTCGACGTATGCCGCCGT 62.548 66.667 0.00 0.00 43.30 5.68
13 14 3.538028 ATCTCGACGTATGCCGCCG 62.538 63.158 0.00 0.00 44.24 6.46
14 15 2.016704 CATCTCGACGTATGCCGCC 61.017 63.158 0.00 0.00 41.42 6.13
15 16 2.649257 GCATCTCGACGTATGCCGC 61.649 63.158 20.11 4.45 42.13 6.53
16 17 0.664466 ATGCATCTCGACGTATGCCG 60.664 55.000 24.62 3.44 46.34 5.69
17 18 1.063806 GATGCATCTCGACGTATGCC 58.936 55.000 24.62 13.26 46.34 4.40
18 19 0.705094 CGATGCATCTCGACGTATGC 59.295 55.000 23.73 22.44 46.92 3.14
19 20 2.037941 ACGATGCATCTCGACGTATG 57.962 50.000 23.73 7.89 41.12 2.39
20 21 4.421033 AATACGATGCATCTCGACGTAT 57.579 40.909 23.73 21.10 46.82 3.06
21 22 3.891056 AATACGATGCATCTCGACGTA 57.109 42.857 23.73 19.91 41.12 3.57
22 23 2.776312 AATACGATGCATCTCGACGT 57.224 45.000 23.73 18.46 41.12 4.34
23 24 3.042887 TCAAATACGATGCATCTCGACG 58.957 45.455 23.73 13.60 41.12 5.12
24 25 4.604043 CGTTCAAATACGATGCATCTCGAC 60.604 45.833 23.73 9.95 43.99 4.20
25 26 3.485743 CGTTCAAATACGATGCATCTCGA 59.514 43.478 23.73 9.54 43.99 4.04
26 27 3.776742 CGTTCAAATACGATGCATCTCG 58.223 45.455 23.73 16.14 43.99 4.04
27 28 3.535860 GCGTTCAAATACGATGCATCTC 58.464 45.455 23.73 0.67 43.99 2.75
28 29 2.287915 GGCGTTCAAATACGATGCATCT 59.712 45.455 23.73 13.36 43.99 2.90
29 30 2.287915 AGGCGTTCAAATACGATGCATC 59.712 45.455 17.10 17.10 43.99 3.91
30 31 2.288666 AGGCGTTCAAATACGATGCAT 58.711 42.857 0.00 0.00 43.99 3.96
31 32 1.732941 AGGCGTTCAAATACGATGCA 58.267 45.000 0.00 0.00 43.99 3.96
32 33 3.060473 GTCTAGGCGTTCAAATACGATGC 60.060 47.826 0.00 0.00 43.99 3.91
33 34 4.109766 TGTCTAGGCGTTCAAATACGATG 58.890 43.478 0.00 0.00 43.99 3.84
34 35 4.380841 TGTCTAGGCGTTCAAATACGAT 57.619 40.909 0.00 0.00 43.99 3.73
35 36 3.853831 TGTCTAGGCGTTCAAATACGA 57.146 42.857 0.00 0.00 43.99 3.43
36 37 3.924686 ACTTGTCTAGGCGTTCAAATACG 59.075 43.478 0.00 0.00 44.09 3.06
37 38 5.857822 AACTTGTCTAGGCGTTCAAATAC 57.142 39.130 0.00 0.00 0.00 1.89
38 39 6.537301 CCATAACTTGTCTAGGCGTTCAAATA 59.463 38.462 0.00 0.00 0.00 1.40
39 40 5.354234 CCATAACTTGTCTAGGCGTTCAAAT 59.646 40.000 0.00 0.00 0.00 2.32
40 41 4.693566 CCATAACTTGTCTAGGCGTTCAAA 59.306 41.667 0.00 0.00 0.00 2.69
41 42 4.250464 CCATAACTTGTCTAGGCGTTCAA 58.750 43.478 0.00 0.00 0.00 2.69
42 43 3.857052 CCATAACTTGTCTAGGCGTTCA 58.143 45.455 0.00 0.00 0.00 3.18
43 44 2.608090 GCCATAACTTGTCTAGGCGTTC 59.392 50.000 0.00 0.00 31.88 3.95
44 45 2.027561 TGCCATAACTTGTCTAGGCGTT 60.028 45.455 0.00 0.00 44.83 4.84
45 46 1.553248 TGCCATAACTTGTCTAGGCGT 59.447 47.619 0.00 0.00 44.83 5.68
46 47 2.309528 TGCCATAACTTGTCTAGGCG 57.690 50.000 0.00 0.00 44.83 5.52
47 48 5.368989 AGTAATGCCATAACTTGTCTAGGC 58.631 41.667 0.00 0.00 42.32 3.93
48 49 7.865706 AAAGTAATGCCATAACTTGTCTAGG 57.134 36.000 0.00 0.00 33.85 3.02
49 50 8.730680 ACAAAAGTAATGCCATAACTTGTCTAG 58.269 33.333 0.00 0.00 33.85 2.43
50 51 8.511321 CACAAAAGTAATGCCATAACTTGTCTA 58.489 33.333 0.00 0.00 33.85 2.59
51 52 7.014230 ACACAAAAGTAATGCCATAACTTGTCT 59.986 33.333 0.00 0.00 33.85 3.41
52 53 7.145323 ACACAAAAGTAATGCCATAACTTGTC 58.855 34.615 0.00 0.00 33.85 3.18
53 54 7.049799 ACACAAAAGTAATGCCATAACTTGT 57.950 32.000 0.00 0.00 33.85 3.16
54 55 9.638239 AATACACAAAAGTAATGCCATAACTTG 57.362 29.630 0.00 0.00 33.85 3.16
60 61 9.553064 TTGAAAAATACACAAAAGTAATGCCAT 57.447 25.926 0.00 0.00 0.00 4.40
61 62 8.948631 TTGAAAAATACACAAAAGTAATGCCA 57.051 26.923 0.00 0.00 0.00 4.92
62 63 9.040939 ACTTGAAAAATACACAAAAGTAATGCC 57.959 29.630 0.00 0.00 0.00 4.40
68 69 9.093970 GCCTAAACTTGAAAAATACACAAAAGT 57.906 29.630 0.00 0.00 0.00 2.66
69 70 9.092876 TGCCTAAACTTGAAAAATACACAAAAG 57.907 29.630 0.00 0.00 0.00 2.27
70 71 8.874816 GTGCCTAAACTTGAAAAATACACAAAA 58.125 29.630 0.00 0.00 0.00 2.44
71 72 8.254508 AGTGCCTAAACTTGAAAAATACACAAA 58.745 29.630 0.00 0.00 0.00 2.83
72 73 7.777095 AGTGCCTAAACTTGAAAAATACACAA 58.223 30.769 0.00 0.00 0.00 3.33
73 74 7.341445 AGTGCCTAAACTTGAAAAATACACA 57.659 32.000 0.00 0.00 0.00 3.72
74 75 9.738832 TTTAGTGCCTAAACTTGAAAAATACAC 57.261 29.630 3.99 0.00 31.94 2.90
75 76 9.738832 GTTTAGTGCCTAAACTTGAAAAATACA 57.261 29.630 21.17 0.00 46.95 2.29
88 89 2.419667 GCGGTCAGTTTAGTGCCTAAA 58.580 47.619 3.99 3.99 34.12 1.85
89 90 1.670674 CGCGGTCAGTTTAGTGCCTAA 60.671 52.381 0.00 0.00 0.00 2.69
90 91 0.108992 CGCGGTCAGTTTAGTGCCTA 60.109 55.000 0.00 0.00 0.00 3.93
91 92 1.374252 CGCGGTCAGTTTAGTGCCT 60.374 57.895 0.00 0.00 0.00 4.75
92 93 3.023591 GCGCGGTCAGTTTAGTGCC 62.024 63.158 8.83 0.00 34.41 5.01
93 94 2.474712 GCGCGGTCAGTTTAGTGC 59.525 61.111 8.83 0.00 0.00 4.40
94 95 2.726691 CGGCGCGGTCAGTTTAGTG 61.727 63.158 8.83 0.00 0.00 2.74
95 96 2.431942 CGGCGCGGTCAGTTTAGT 60.432 61.111 8.83 0.00 0.00 2.24
96 97 3.186047 CCGGCGCGGTCAGTTTAG 61.186 66.667 8.83 0.00 42.73 1.85
106 107 3.186047 CCTAAGTTGTCCGGCGCG 61.186 66.667 0.00 0.00 0.00 6.86
107 108 2.818274 CCCTAAGTTGTCCGGCGC 60.818 66.667 0.00 0.00 0.00 6.53
108 109 2.818274 GCCCTAAGTTGTCCGGCG 60.818 66.667 0.00 0.00 0.00 6.46
109 110 2.038837 GTGCCCTAAGTTGTCCGGC 61.039 63.158 0.00 0.00 40.16 6.13
110 111 1.376812 GGTGCCCTAAGTTGTCCGG 60.377 63.158 0.00 0.00 0.00 5.14
111 112 0.391263 GAGGTGCCCTAAGTTGTCCG 60.391 60.000 0.00 0.00 31.76 4.79
112 113 0.984995 AGAGGTGCCCTAAGTTGTCC 59.015 55.000 0.00 0.00 31.76 4.02
113 114 2.832733 ACTAGAGGTGCCCTAAGTTGTC 59.167 50.000 0.00 0.00 31.76 3.18
114 115 2.567615 CACTAGAGGTGCCCTAAGTTGT 59.432 50.000 0.00 0.00 39.22 3.32
115 116 3.252974 CACTAGAGGTGCCCTAAGTTG 57.747 52.381 0.00 1.70 39.22 3.16
140 141 9.363401 TGGTCGAAGAGGAAATATAAAGAGATA 57.637 33.333 0.00 0.00 36.95 1.98
141 142 8.251383 TGGTCGAAGAGGAAATATAAAGAGAT 57.749 34.615 0.00 0.00 36.95 2.75
142 143 7.655521 TGGTCGAAGAGGAAATATAAAGAGA 57.344 36.000 0.00 0.00 36.95 3.10
143 144 8.364142 AGATGGTCGAAGAGGAAATATAAAGAG 58.636 37.037 0.00 0.00 36.95 2.85
144 145 8.251383 AGATGGTCGAAGAGGAAATATAAAGA 57.749 34.615 0.00 0.00 36.95 2.52
145 146 7.600752 GGAGATGGTCGAAGAGGAAATATAAAG 59.399 40.741 0.00 0.00 36.95 1.85
257 258 2.027385 GGAGAAGATGGAACCCAATGC 58.973 52.381 0.00 0.00 36.95 3.56
685 686 7.569240 AGGTGTTCTTTCCTTCCTTATGATAG 58.431 38.462 0.00 0.00 0.00 2.08
746 748 3.535280 TGAGGTTTTGCTTTTTGGGAC 57.465 42.857 0.00 0.00 0.00 4.46
1440 4748 2.758979 GGACAGTATCTCGAACCTTCCA 59.241 50.000 0.00 0.00 0.00 3.53
1749 5057 0.955919 GCAGGTTGAAGAACGGGAGG 60.956 60.000 0.00 0.00 32.28 4.30
1842 5150 1.475403 AGATCCATCACGAGAACGGT 58.525 50.000 0.00 0.00 44.46 4.83
1911 5250 9.382275 TCACAATGAAAAAGAGATAATCGATCA 57.618 29.630 0.00 0.00 36.98 2.92
1980 5319 6.825721 TCAGCAAATTAACACCAACCAAATTT 59.174 30.769 0.00 0.00 31.67 1.82
1981 5320 6.352516 TCAGCAAATTAACACCAACCAAATT 58.647 32.000 0.00 0.00 0.00 1.82
1982 5321 5.923204 TCAGCAAATTAACACCAACCAAAT 58.077 33.333 0.00 0.00 0.00 2.32
1983 5322 5.344743 TCAGCAAATTAACACCAACCAAA 57.655 34.783 0.00 0.00 0.00 3.28
2038 5377 4.083537 GGTGAATTTATGAGTGCACGTTCA 60.084 41.667 12.01 11.34 0.00 3.18
2106 5445 3.235179 GCGTCATGCGAAAAATTAACTCG 59.765 43.478 12.67 0.68 44.77 4.18
2191 5530 8.651391 TCAACGAAATCAAACAAGTAGAAGTA 57.349 30.769 0.00 0.00 0.00 2.24
2248 5592 7.857885 GTGAATAGATAGTAGCAAAAATGGCAC 59.142 37.037 0.00 0.00 0.00 5.01
2308 5985 5.520376 ACAAATGAGAGGAAAACCAAGTG 57.480 39.130 0.00 0.00 0.00 3.16
2377 6054 4.207891 ACACACACCTGAGACCATTATC 57.792 45.455 0.00 0.00 0.00 1.75
2448 6125 4.592485 AGTCATATAAGGACTCCGCAAG 57.408 45.455 4.96 0.00 41.63 4.01
2450 6127 6.665992 AATAAGTCATATAAGGACTCCGCA 57.334 37.500 9.96 0.05 44.50 5.69
2521 6198 7.939588 GGGAATAGGAACTTGAATATAGCTGTT 59.060 37.037 0.00 0.00 41.75 3.16
2532 6209 4.635473 AGGATCAGGGAATAGGAACTTGA 58.365 43.478 0.00 0.00 41.75 3.02
2559 6236 9.679661 TTGATATATGCTGGTTAACTTGAAGAA 57.320 29.630 5.42 0.00 0.00 2.52
2567 6244 8.246180 CCCATCAATTGATATATGCTGGTTAAC 58.754 37.037 20.32 0.00 30.30 2.01
2692 6369 0.321671 CTGTTCGCTCTTTCCCCAGA 59.678 55.000 0.00 0.00 0.00 3.86
2706 6383 2.749621 CAATGTTCTACCCCAGCTGTTC 59.250 50.000 13.81 0.00 0.00 3.18
2733 6410 7.650903 AGAGAAATCAAGCTTAAAGTGCAAAAG 59.349 33.333 0.00 0.00 0.00 2.27
2766 6443 2.458620 AGCTGTGACCCTAGTACCTTC 58.541 52.381 0.00 0.00 0.00 3.46
2813 6490 5.489792 ACATGAAGTAAGCCTCTTCTTCA 57.510 39.130 0.00 16.17 46.18 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.