Multiple sequence alignment - TraesCS7B01G187100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G187100 chr7B 100.000 5909 0 0 1 5909 313174340 313180248 0.000000e+00 10912.0
1 TraesCS7B01G187100 chr7B 97.313 670 14 1 5244 5909 364620907 364621576 0.000000e+00 1134.0
2 TraesCS7B01G187100 chr7B 95.373 670 27 1 5244 5909 130896376 130895707 0.000000e+00 1062.0
3 TraesCS7B01G187100 chr7B 95.455 132 6 0 2372 2503 281384027 281384158 1.670000e-50 211.0
4 TraesCS7B01G187100 chr7B 90.000 120 12 0 2078 2197 373075412 373075531 7.930000e-34 156.0
5 TraesCS7B01G187100 chr7B 88.800 125 14 0 2078 2202 522721477 522721353 2.850000e-33 154.0
6 TraesCS7B01G187100 chr7A 92.498 2426 121 34 5 2378 407860270 407862686 0.000000e+00 3415.0
7 TraesCS7B01G187100 chr7A 92.678 1352 61 11 2501 3850 407862684 407863999 0.000000e+00 1914.0
8 TraesCS7B01G187100 chr7A 94.450 919 31 8 4333 5242 407864471 407865378 0.000000e+00 1397.0
9 TraesCS7B01G187100 chr7A 93.130 262 13 4 3995 4256 407864220 407864476 4.320000e-101 379.0
10 TraesCS7B01G187100 chr7A 94.245 139 6 2 2377 2513 634386555 634386693 1.670000e-50 211.0
11 TraesCS7B01G187100 chr7A 92.701 137 7 2 3859 3995 407864060 407864193 1.680000e-45 195.0
12 TraesCS7B01G187100 chr7A 91.954 87 7 0 4250 4336 34744205 34744291 8.040000e-24 122.0
13 TraesCS7B01G187100 chr7A 86.076 79 8 2 4181 4256 98100750 98100672 1.360000e-11 82.4
14 TraesCS7B01G187100 chr7D 92.546 2388 90 36 1 2378 368562698 368565007 0.000000e+00 3343.0
15 TraesCS7B01G187100 chr7D 93.229 1787 68 11 2501 4256 368565005 368566769 0.000000e+00 2580.0
16 TraesCS7B01G187100 chr7D 96.244 639 9 4 4335 4972 368566766 368567390 0.000000e+00 1033.0
17 TraesCS7B01G187100 chr7D 95.470 574 20 3 5244 5812 451866412 451865840 0.000000e+00 911.0
18 TraesCS7B01G187100 chr7D 94.161 137 7 1 2367 2503 150359436 150359301 2.160000e-49 207.0
19 TraesCS7B01G187100 chr2A 90.876 1644 83 27 1 1634 337543443 337545029 0.000000e+00 2143.0
20 TraesCS7B01G187100 chr2A 93.827 81 4 1 4261 4340 203318582 203318502 2.890000e-23 121.0
21 TraesCS7B01G187100 chr3D 95.821 670 23 2 5244 5909 173597977 173598645 0.000000e+00 1077.0
22 TraesCS7B01G187100 chr3D 96.850 127 4 0 2377 2503 67437065 67437191 4.640000e-51 213.0
23 TraesCS7B01G187100 chr3D 91.304 115 10 0 2088 2202 25133089 25132975 2.200000e-34 158.0
24 TraesCS7B01G187100 chr3D 97.619 84 2 0 4253 4336 57388011 57387928 1.720000e-30 145.0
25 TraesCS7B01G187100 chr3D 94.253 87 3 1 4253 4339 13489522 13489438 1.340000e-26 132.0
26 TraesCS7B01G187100 chr3D 80.556 108 17 3 3838 3945 8775216 8775113 4.910000e-11 80.5
27 TraesCS7B01G187100 chr6B 95.672 670 24 2 5244 5909 678693565 678692897 0.000000e+00 1072.0
28 TraesCS7B01G187100 chr6B 91.667 120 10 0 2083 2202 469774178 469774297 3.660000e-37 167.0
29 TraesCS7B01G187100 chr6B 90.000 50 4 1 230 279 664042693 664042645 4.940000e-06 63.9
30 TraesCS7B01G187100 chr2D 95.075 670 28 2 5244 5909 512290050 512289382 0.000000e+00 1050.0
31 TraesCS7B01G187100 chr2D 94.940 672 28 3 5241 5907 38749450 38750120 0.000000e+00 1048.0
32 TraesCS7B01G187100 chr2D 81.034 232 28 8 4039 4256 81159742 81159513 2.830000e-38 171.0
33 TraesCS7B01G187100 chr3B 92.411 672 43 4 5244 5909 32063789 32063120 0.000000e+00 952.0
34 TraesCS7B01G187100 chr1B 89.896 673 59 6 5244 5909 240439353 240438683 0.000000e+00 857.0
35 TraesCS7B01G187100 chr1B 93.571 140 9 0 2366 2505 659725892 659726031 6.000000e-50 209.0
36 TraesCS7B01G187100 chr1B 93.571 140 7 2 2372 2509 409879940 409879801 2.160000e-49 207.0
37 TraesCS7B01G187100 chrUn 96.154 130 5 0 2376 2505 87981694 87981823 4.640000e-51 213.0
38 TraesCS7B01G187100 chrUn 97.619 84 2 0 4253 4336 110518204 110518287 1.720000e-30 145.0
39 TraesCS7B01G187100 chr2B 93.478 138 9 0 2369 2506 281881607 281881470 7.760000e-49 206.0
40 TraesCS7B01G187100 chr2B 77.358 159 29 5 180 337 115857112 115857264 2.930000e-13 87.9
41 TraesCS7B01G187100 chr3A 92.908 141 8 1 2376 2514 736073300 736073160 2.790000e-48 204.0
42 TraesCS7B01G187100 chr3A 89.600 125 13 0 2078 2202 34532613 34532489 6.130000e-35 159.0
43 TraesCS7B01G187100 chr6D 92.500 120 9 0 2083 2202 304099293 304099412 7.870000e-39 172.0
44 TraesCS7B01G187100 chr5D 89.600 125 13 0 2078 2202 93062100 93062224 6.130000e-35 159.0
45 TraesCS7B01G187100 chr5D 88.608 79 6 2 4181 4256 45172477 45172555 6.310000e-15 93.5
46 TraesCS7B01G187100 chr4A 79.741 232 31 6 4039 4256 321899325 321899554 2.850000e-33 154.0
47 TraesCS7B01G187100 chr4A 78.736 174 20 10 4097 4256 518816938 518817108 3.770000e-17 100.0
48 TraesCS7B01G187100 chr5B 97.500 80 2 0 4250 4329 611996503 611996582 2.870000e-28 137.0
49 TraesCS7B01G187100 chr6A 94.253 87 4 1 4252 4337 457397515 457397429 1.340000e-26 132.0
50 TraesCS7B01G187100 chr5A 89.796 98 10 0 4241 4338 394747978 394748075 6.220000e-25 126.0
51 TraesCS7B01G187100 chr5A 76.793 237 33 13 4038 4256 367594540 367594772 4.840000e-21 113.0
52 TraesCS7B01G187100 chr5A 79.191 173 18 11 4098 4256 119248210 119248378 2.910000e-18 104.0
53 TraesCS7B01G187100 chr1A 92.941 85 6 0 4253 4337 261814708 261814792 2.240000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G187100 chr7B 313174340 313180248 5908 False 10912.000000 10912 100.000000 1 5909 1 chr7B.!!$F2 5908
1 TraesCS7B01G187100 chr7B 364620907 364621576 669 False 1134.000000 1134 97.313000 5244 5909 1 chr7B.!!$F3 665
2 TraesCS7B01G187100 chr7B 130895707 130896376 669 True 1062.000000 1062 95.373000 5244 5909 1 chr7B.!!$R1 665
3 TraesCS7B01G187100 chr7A 407860270 407865378 5108 False 1460.000000 3415 93.091400 5 5242 5 chr7A.!!$F3 5237
4 TraesCS7B01G187100 chr7D 368562698 368567390 4692 False 2318.666667 3343 94.006333 1 4972 3 chr7D.!!$F1 4971
5 TraesCS7B01G187100 chr7D 451865840 451866412 572 True 911.000000 911 95.470000 5244 5812 1 chr7D.!!$R2 568
6 TraesCS7B01G187100 chr2A 337543443 337545029 1586 False 2143.000000 2143 90.876000 1 1634 1 chr2A.!!$F1 1633
7 TraesCS7B01G187100 chr3D 173597977 173598645 668 False 1077.000000 1077 95.821000 5244 5909 1 chr3D.!!$F2 665
8 TraesCS7B01G187100 chr6B 678692897 678693565 668 True 1072.000000 1072 95.672000 5244 5909 1 chr6B.!!$R2 665
9 TraesCS7B01G187100 chr2D 512289382 512290050 668 True 1050.000000 1050 95.075000 5244 5909 1 chr2D.!!$R2 665
10 TraesCS7B01G187100 chr2D 38749450 38750120 670 False 1048.000000 1048 94.940000 5241 5907 1 chr2D.!!$F1 666
11 TraesCS7B01G187100 chr3B 32063120 32063789 669 True 952.000000 952 92.411000 5244 5909 1 chr3B.!!$R1 665
12 TraesCS7B01G187100 chr1B 240438683 240439353 670 True 857.000000 857 89.896000 5244 5909 1 chr1B.!!$R1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 802 0.036732 AGGCAACATCCTTTCTCGCA 59.963 50.0 0.00 0.0 41.41 5.10 F
2138 2204 0.037232 CAAGAGGTCCTGGGTTCGAC 60.037 60.0 0.00 0.0 0.00 4.20 F
2500 2566 0.030908 GTATTCTCGGACGGAGGCAG 59.969 60.0 9.88 0.0 43.34 4.85 F
2501 2567 0.395311 TATTCTCGGACGGAGGCAGT 60.395 55.0 9.88 0.0 43.34 4.40 F
2502 2568 0.395311 ATTCTCGGACGGAGGCAGTA 60.395 55.0 9.88 0.0 43.34 2.74 F
4046 4193 0.798776 CATGGCGACCTGTTGAGAAC 59.201 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 2547 0.030908 CTGCCTCCGTCCGAGAATAC 59.969 60.000 0.00 0.00 41.63 1.89 R
3750 3817 0.954452 CACCAAACAGGGCTTCAGTC 59.046 55.000 0.00 0.00 43.89 3.51 R
4322 4471 0.108281 GCAAAGTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79 R
4337 4486 0.187361 AGGCCCTGTTTGGTAGCAAA 59.813 50.000 15.83 15.83 0.00 3.68 R
4498 4647 1.002087 AGGAAGTTTCGAAGATGCCGT 59.998 47.619 0.00 0.00 35.04 5.68 R
5195 5352 0.181587 TGAGCCCGGAGTGAAAAACA 59.818 50.000 0.73 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.660112 CATATAATTTAAGCAATCCAGTGGCA 58.340 34.615 3.51 0.00 0.00 4.92
80 81 5.509716 ACATGCATGATAAACACATGGAG 57.490 39.130 32.75 0.59 45.77 3.86
92 93 2.505819 ACACATGGAGGGATAAGGTGTC 59.494 50.000 0.00 0.00 33.10 3.67
100 101 5.075493 GGAGGGATAAGGTGTCGAGTAATA 58.925 45.833 0.00 0.00 0.00 0.98
103 104 5.895534 AGGGATAAGGTGTCGAGTAATAACA 59.104 40.000 0.00 0.00 0.00 2.41
134 135 3.702548 AGCAAATGGATTATGAGCTGCAA 59.297 39.130 1.02 0.00 31.04 4.08
139 140 7.259882 CAAATGGATTATGAGCTGCAAAAGTA 58.740 34.615 1.02 0.00 0.00 2.24
150 151 5.358922 AGCTGCAAAAGTAAAGAAAATGCA 58.641 33.333 1.02 0.00 39.73 3.96
207 208 2.892852 CCACACCCAACATGAACATCTT 59.107 45.455 0.00 0.00 0.00 2.40
211 212 2.821969 ACCCAACATGAACATCTTCTGC 59.178 45.455 0.00 0.00 0.00 4.26
217 218 3.128764 ACATGAACATCTTCTGCATGCAG 59.871 43.478 36.80 36.80 44.86 4.41
242 243 9.393512 AGAATCTTTTAATTGAGAGGATGTCAG 57.606 33.333 0.00 0.00 40.53 3.51
313 314 6.986904 AAGAAATAAAGAGAAACCTAGCCG 57.013 37.500 0.00 0.00 0.00 5.52
316 317 5.934402 AATAAAGAGAAACCTAGCCGAGA 57.066 39.130 0.00 0.00 0.00 4.04
337 338 1.786937 TCATGGCAAAGGGTGTTGTT 58.213 45.000 0.00 0.00 0.00 2.83
346 347 2.435372 AGGGTGTTGTTCTGCTGAAA 57.565 45.000 7.68 0.00 33.52 2.69
358 359 2.079158 CTGCTGAAATGAAGAGGCGAA 58.921 47.619 0.00 0.00 0.00 4.70
478 487 3.310774 CGATTGCGTCCTTCAATCTCAAT 59.689 43.478 12.15 0.00 44.53 2.57
533 542 2.501128 CTGCATCCCCGTGTCGAT 59.499 61.111 0.00 0.00 0.00 3.59
547 556 0.618981 GTCGATTGGTTCCCCTCCTT 59.381 55.000 0.00 0.00 0.00 3.36
563 577 1.437149 TCCTTTCTCTCTCTTCCCCCA 59.563 52.381 0.00 0.00 0.00 4.96
569 583 2.046292 CTCTCTCTTCCCCCATTCTCC 58.954 57.143 0.00 0.00 0.00 3.71
573 587 0.327576 TCTTCCCCCATTCTCCCTCC 60.328 60.000 0.00 0.00 0.00 4.30
587 631 1.010793 TCCCTCCCTCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
661 705 1.821258 GTGTGTAGACGGATCCCCC 59.179 63.158 6.06 0.00 0.00 5.40
664 708 1.201424 GTGTAGACGGATCCCCCTTT 58.799 55.000 6.06 0.00 0.00 3.11
681 725 1.074566 CTTTCCCTTTCTCCAGGCAGT 59.925 52.381 0.00 0.00 31.69 4.40
686 730 1.610102 CCTTTCTCCAGGCAGTGACAG 60.610 57.143 0.00 0.00 0.00 3.51
703 747 0.104671 CAGGCCCCACTTGTTGTTTG 59.895 55.000 0.00 0.00 0.00 2.93
704 748 1.227527 GGCCCCACTTGTTGTTTGC 60.228 57.895 0.00 0.00 0.00 3.68
726 770 1.219522 CGAAGCGAACGACCCTGTTT 61.220 55.000 0.00 0.00 30.75 2.83
728 772 0.942252 AAGCGAACGACCCTGTTTTC 59.058 50.000 0.00 0.00 30.75 2.29
729 773 0.883370 AGCGAACGACCCTGTTTTCC 60.883 55.000 0.00 0.00 30.75 3.13
730 774 1.161563 GCGAACGACCCTGTTTTCCA 61.162 55.000 0.00 0.00 30.75 3.53
737 782 2.615493 CGACCCTGTTTTCCATGCTAGT 60.615 50.000 0.00 0.00 0.00 2.57
739 784 4.192317 GACCCTGTTTTCCATGCTAGTAG 58.808 47.826 0.00 0.00 0.00 2.57
740 785 3.054361 ACCCTGTTTTCCATGCTAGTAGG 60.054 47.826 0.00 0.00 0.00 3.18
757 802 0.036732 AGGCAACATCCTTTCTCGCA 59.963 50.000 0.00 0.00 41.41 5.10
771 816 1.945394 TCTCGCATACCTCGTAGGAAC 59.055 52.381 7.76 0.00 37.67 3.62
818 863 0.828677 ATAGGCCCACGTAACCAGAC 59.171 55.000 0.00 0.00 0.00 3.51
820 865 2.652530 GCCCACGTAACCAGACGA 59.347 61.111 2.55 0.00 45.82 4.20
822 867 1.661480 CCCACGTAACCAGACGACA 59.339 57.895 2.55 0.00 45.82 4.35
830 877 2.457366 AACCAGACGACACATTCCTC 57.543 50.000 0.00 0.00 0.00 3.71
914 961 3.831715 GCAGTTTTAACGGCTGAGATT 57.168 42.857 0.00 0.00 44.88 2.40
926 973 5.245531 ACGGCTGAGATTTTCTAAATCACA 58.754 37.500 13.00 11.63 0.00 3.58
1029 1076 2.799017 TCTCGAGCTAGGGTTGTAACA 58.201 47.619 7.81 0.00 0.00 2.41
1769 1816 3.368190 CTCTGCTACTGCTGCCGCT 62.368 63.158 0.70 0.00 40.48 5.52
1787 1834 0.622665 CTGCCTCTCCAAATGGACCT 59.377 55.000 0.00 0.00 39.78 3.85
1899 1946 0.906282 TCATGGAGCTGCTGGTGAGA 60.906 55.000 7.01 0.00 0.00 3.27
2040 2088 7.341512 TCACATTTCATATAAACAATGAGGCCA 59.658 33.333 5.01 0.00 34.93 5.36
2041 2089 8.145767 CACATTTCATATAAACAATGAGGCCAT 58.854 33.333 5.01 0.00 34.93 4.40
2042 2090 9.365906 ACATTTCATATAAACAATGAGGCCATA 57.634 29.630 5.01 0.00 34.93 2.74
2090 2156 0.767375 TGATGGAGGATAGGCTTGGC 59.233 55.000 0.00 0.00 0.00 4.52
2096 2162 1.048724 AGGATAGGCTTGGCGCAGTA 61.049 55.000 10.83 0.00 41.67 2.74
2099 2165 1.340248 GATAGGCTTGGCGCAGTAGTA 59.660 52.381 10.83 0.00 41.67 1.82
2103 2169 0.097150 GCTTGGCGCAGTAGTAAAGC 59.903 55.000 10.83 8.52 38.92 3.51
2134 2200 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
2138 2204 0.037232 CAAGAGGTCCTGGGTTCGAC 60.037 60.000 0.00 0.00 0.00 4.20
2238 2304 5.352569 GTCTGTCCTTACTCATGTCCATTTG 59.647 44.000 0.00 0.00 0.00 2.32
2243 2309 4.399303 CCTTACTCATGTCCATTTGTTCCC 59.601 45.833 0.00 0.00 0.00 3.97
2259 2325 2.370849 GTTCCCTGAGACTGTAACCCAA 59.629 50.000 0.00 0.00 0.00 4.12
2337 2403 5.960105 GCTTTTGCGTACATTCAGATAAGTC 59.040 40.000 0.00 0.00 34.86 3.01
2378 2444 4.511454 ACCACAATGCATCATATGTCGTAC 59.489 41.667 0.00 0.00 0.00 3.67
2379 2445 4.751600 CCACAATGCATCATATGTCGTACT 59.248 41.667 0.00 0.00 0.00 2.73
2380 2446 5.107337 CCACAATGCATCATATGTCGTACTC 60.107 44.000 0.00 0.00 0.00 2.59
2381 2447 4.991056 ACAATGCATCATATGTCGTACTCC 59.009 41.667 0.00 0.00 0.00 3.85
2382 2448 3.660501 TGCATCATATGTCGTACTCCC 57.339 47.619 1.90 0.00 0.00 4.30
2383 2449 3.230976 TGCATCATATGTCGTACTCCCT 58.769 45.455 1.90 0.00 0.00 4.20
2384 2450 3.255888 TGCATCATATGTCGTACTCCCTC 59.744 47.826 1.90 0.00 0.00 4.30
2385 2451 3.508012 GCATCATATGTCGTACTCCCTCT 59.492 47.826 1.90 0.00 0.00 3.69
2386 2452 4.617067 GCATCATATGTCGTACTCCCTCTG 60.617 50.000 1.90 0.00 0.00 3.35
2387 2453 4.166246 TCATATGTCGTACTCCCTCTGT 57.834 45.455 1.90 0.00 0.00 3.41
2388 2454 4.135306 TCATATGTCGTACTCCCTCTGTC 58.865 47.826 1.90 0.00 0.00 3.51
2389 2455 1.765230 ATGTCGTACTCCCTCTGTCC 58.235 55.000 0.00 0.00 0.00 4.02
2390 2456 0.402887 TGTCGTACTCCCTCTGTCCA 59.597 55.000 0.00 0.00 0.00 4.02
2391 2457 1.096416 GTCGTACTCCCTCTGTCCAG 58.904 60.000 0.00 0.00 0.00 3.86
2392 2458 0.989602 TCGTACTCCCTCTGTCCAGA 59.010 55.000 0.00 0.00 35.85 3.86
2393 2459 1.353358 TCGTACTCCCTCTGTCCAGAA 59.647 52.381 0.00 0.00 36.94 3.02
2394 2460 2.168496 CGTACTCCCTCTGTCCAGAAA 58.832 52.381 0.00 0.00 36.94 2.52
2395 2461 2.761208 CGTACTCCCTCTGTCCAGAAAT 59.239 50.000 0.00 0.00 36.94 2.17
2396 2462 3.952323 CGTACTCCCTCTGTCCAGAAATA 59.048 47.826 0.00 0.00 36.94 1.40
2397 2463 4.202030 CGTACTCCCTCTGTCCAGAAATAC 60.202 50.000 0.00 0.00 36.94 1.89
2398 2464 4.067944 ACTCCCTCTGTCCAGAAATACT 57.932 45.455 0.00 0.00 36.94 2.12
2399 2465 4.430441 ACTCCCTCTGTCCAGAAATACTT 58.570 43.478 0.00 0.00 36.94 2.24
2400 2466 4.223923 ACTCCCTCTGTCCAGAAATACTTG 59.776 45.833 0.00 0.00 36.94 3.16
2401 2467 4.168101 TCCCTCTGTCCAGAAATACTTGT 58.832 43.478 0.00 0.00 36.94 3.16
2402 2468 4.223032 TCCCTCTGTCCAGAAATACTTGTC 59.777 45.833 0.00 0.00 36.94 3.18
2403 2469 4.020218 CCCTCTGTCCAGAAATACTTGTCA 60.020 45.833 0.00 0.00 36.94 3.58
2404 2470 5.338708 CCCTCTGTCCAGAAATACTTGTCAT 60.339 44.000 0.00 0.00 36.94 3.06
2405 2471 5.814705 CCTCTGTCCAGAAATACTTGTCATC 59.185 44.000 0.00 0.00 36.94 2.92
2406 2472 6.358974 TCTGTCCAGAAATACTTGTCATCA 57.641 37.500 0.00 0.00 33.91 3.07
2407 2473 6.768483 TCTGTCCAGAAATACTTGTCATCAA 58.232 36.000 0.00 0.00 33.91 2.57
2408 2474 7.223584 TCTGTCCAGAAATACTTGTCATCAAA 58.776 34.615 0.00 0.00 33.91 2.69
2409 2475 7.719193 TCTGTCCAGAAATACTTGTCATCAAAA 59.281 33.333 0.00 0.00 33.91 2.44
2410 2476 8.408043 TGTCCAGAAATACTTGTCATCAAAAT 57.592 30.769 0.00 0.00 32.87 1.82
2411 2477 8.298854 TGTCCAGAAATACTTGTCATCAAAATG 58.701 33.333 0.00 0.00 32.87 2.32
2412 2478 8.299570 GTCCAGAAATACTTGTCATCAAAATGT 58.700 33.333 0.00 0.00 34.32 2.71
2413 2479 9.513906 TCCAGAAATACTTGTCATCAAAATGTA 57.486 29.630 0.00 0.00 34.32 2.29
2422 2488 8.531146 ACTTGTCATCAAAATGTATAAAAGGGG 58.469 33.333 0.00 0.00 34.32 4.79
2423 2489 8.657387 TTGTCATCAAAATGTATAAAAGGGGA 57.343 30.769 0.00 0.00 34.32 4.81
2424 2490 8.837099 TGTCATCAAAATGTATAAAAGGGGAT 57.163 30.769 0.00 0.00 34.32 3.85
2425 2491 8.694540 TGTCATCAAAATGTATAAAAGGGGATG 58.305 33.333 0.00 0.00 34.32 3.51
2426 2492 8.695456 GTCATCAAAATGTATAAAAGGGGATGT 58.305 33.333 0.00 0.00 34.32 3.06
2427 2493 9.928618 TCATCAAAATGTATAAAAGGGGATGTA 57.071 29.630 0.00 0.00 34.32 2.29
2436 2502 9.615660 TGTATAAAAGGGGATGTATCTAGATGT 57.384 33.333 15.79 1.25 0.00 3.06
2444 2510 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
2482 2548 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2489 2555 7.307493 TCCATTTTGATGACAAGTATTCTCG 57.693 36.000 0.00 0.00 37.32 4.04
2490 2556 6.316140 TCCATTTTGATGACAAGTATTCTCGG 59.684 38.462 0.00 0.00 37.32 4.63
2491 2557 6.316140 CCATTTTGATGACAAGTATTCTCGGA 59.684 38.462 0.00 0.00 37.32 4.55
2492 2558 6.721571 TTTTGATGACAAGTATTCTCGGAC 57.278 37.500 0.00 0.00 37.32 4.79
2493 2559 4.028852 TGATGACAAGTATTCTCGGACG 57.971 45.455 0.00 0.00 0.00 4.79
2494 2560 2.933495 TGACAAGTATTCTCGGACGG 57.067 50.000 0.00 0.00 0.00 4.79
2495 2561 2.439409 TGACAAGTATTCTCGGACGGA 58.561 47.619 0.00 0.00 0.00 4.69
2496 2562 2.422479 TGACAAGTATTCTCGGACGGAG 59.578 50.000 3.68 3.68 44.58 4.63
2497 2563 1.749634 ACAAGTATTCTCGGACGGAGG 59.250 52.381 9.88 0.00 43.34 4.30
2498 2564 0.745468 AAGTATTCTCGGACGGAGGC 59.255 55.000 9.88 0.06 43.34 4.70
2499 2565 0.395311 AGTATTCTCGGACGGAGGCA 60.395 55.000 9.88 0.00 43.34 4.75
2500 2566 0.030908 GTATTCTCGGACGGAGGCAG 59.969 60.000 9.88 0.00 43.34 4.85
2501 2567 0.395311 TATTCTCGGACGGAGGCAGT 60.395 55.000 9.88 0.00 43.34 4.40
2502 2568 0.395311 ATTCTCGGACGGAGGCAGTA 60.395 55.000 9.88 0.00 43.34 2.74
2638 2704 9.817809 GAAACTCTATGATTGGAAGTATGTACA 57.182 33.333 0.00 0.00 0.00 2.90
2661 2727 2.826128 TCCAACACAGCTACTGGACTAG 59.174 50.000 0.00 0.00 35.51 2.57
2903 2969 2.584835 TCCAACTGGGTTCATCCTTG 57.415 50.000 0.00 0.00 38.11 3.61
2930 2996 2.407090 CTCTCAATTGTGTCACTCGCA 58.593 47.619 5.13 0.00 34.52 5.10
3003 3069 6.581388 ATTCCCTGATATCTTGAACCTTGA 57.419 37.500 3.98 0.00 0.00 3.02
3010 3076 7.384524 TGATATCTTGAACCTTGATCTGGAT 57.615 36.000 11.38 0.80 0.00 3.41
3172 3238 9.823647 GAAGATATCAGAAGTAAACCAGATTCA 57.176 33.333 5.32 0.00 0.00 2.57
3174 3240 9.829507 AGATATCAGAAGTAAACCAGATTCAAG 57.170 33.333 5.32 0.00 0.00 3.02
3220 3286 5.950544 TGAAGCCAGCTCCTAGTAAAATA 57.049 39.130 0.00 0.00 0.00 1.40
3275 3341 6.775629 GCTTATATGGGTTAGGAAAATGACCA 59.224 38.462 0.00 0.00 33.81 4.02
3285 3351 7.364970 GTTAGGAAAATGACCACGTGTTATTT 58.635 34.615 15.65 14.03 42.93 1.40
3315 3381 8.846423 ATATTTTATGGTTTCCATGTTGGGTA 57.154 30.769 11.04 0.00 44.84 3.69
3487 3554 7.437713 ACCTGTAGACAATTGATATCTCCAA 57.562 36.000 13.59 0.00 0.00 3.53
3510 3577 3.441222 TGCAGGTCTTATCTTGCACAATG 59.559 43.478 0.00 0.00 43.47 2.82
3556 3623 4.740205 CAGCATGAGCATTTGCAAGATAAG 59.260 41.667 5.20 0.00 45.49 1.73
3583 3650 2.762535 ATGTAGTACTGGCACCACAC 57.237 50.000 5.39 0.00 0.00 3.82
3601 3668 2.622942 ACACATGCCATTTTTCTGTCGT 59.377 40.909 0.00 0.00 0.00 4.34
3639 3706 4.659111 TGATTCATGCTTAATGGCTTGG 57.341 40.909 0.00 0.00 37.76 3.61
3676 3743 9.623000 ATGGTTACAAATAGACACCTAATTACC 57.377 33.333 0.00 0.00 0.00 2.85
3693 3760 7.282224 CCTAATTACCTTTTGCTGCTATGTACA 59.718 37.037 0.00 0.00 0.00 2.90
3750 3817 4.944962 TTCATCAGATAAACCGCTGTTG 57.055 40.909 0.00 0.00 34.13 3.33
3895 4015 7.110155 AGGTATAAAACATACTGTGGTCTTGG 58.890 38.462 0.00 0.00 0.00 3.61
3940 4060 8.324163 GTATTCACAATACTGAGAACCTGTTT 57.676 34.615 0.00 0.00 40.43 2.83
3943 4063 5.530915 TCACAATACTGAGAACCTGTTTTGG 59.469 40.000 0.00 0.00 38.75 3.28
3952 4072 2.427410 CTGTTTTGGCGCTGCGAC 60.427 61.111 28.07 25.68 34.27 5.19
3989 4109 1.439679 GCCGTTAGCTAGCAAACACT 58.560 50.000 18.83 0.00 38.99 3.55
4018 4165 2.679059 GCAACTGATCAGCCTAAGAGCA 60.679 50.000 22.83 0.00 34.23 4.26
4046 4193 0.798776 CATGGCGACCTGTTGAGAAC 59.201 55.000 0.00 0.00 0.00 3.01
4107 4254 3.498397 TCGGCTGCTCAGTTCTTAAAAAG 59.502 43.478 0.00 0.00 0.00 2.27
4261 4410 9.400638 CTCATAAGCTTAGAAAATACTACTCCG 57.599 37.037 12.54 0.00 0.00 4.63
4262 4411 8.910944 TCATAAGCTTAGAAAATACTACTCCGT 58.089 33.333 12.54 0.00 0.00 4.69
4263 4412 9.182933 CATAAGCTTAGAAAATACTACTCCGTC 57.817 37.037 12.54 0.00 0.00 4.79
4264 4413 6.146601 AGCTTAGAAAATACTACTCCGTCC 57.853 41.667 0.00 0.00 0.00 4.79
4265 4414 5.068855 AGCTTAGAAAATACTACTCCGTCCC 59.931 44.000 0.00 0.00 0.00 4.46
4266 4415 5.163478 GCTTAGAAAATACTACTCCGTCCCA 60.163 44.000 0.00 0.00 0.00 4.37
4267 4416 6.462628 GCTTAGAAAATACTACTCCGTCCCAT 60.463 42.308 0.00 0.00 0.00 4.00
4268 4417 7.255730 GCTTAGAAAATACTACTCCGTCCCATA 60.256 40.741 0.00 0.00 0.00 2.74
4269 4418 8.537728 TTAGAAAATACTACTCCGTCCCATAA 57.462 34.615 0.00 0.00 0.00 1.90
4270 4419 7.613551 AGAAAATACTACTCCGTCCCATAAT 57.386 36.000 0.00 0.00 0.00 1.28
4271 4420 7.442656 AGAAAATACTACTCCGTCCCATAATG 58.557 38.462 0.00 0.00 0.00 1.90
4272 4421 6.742559 AAATACTACTCCGTCCCATAATGT 57.257 37.500 0.00 0.00 0.00 2.71
4273 4422 7.844493 AAATACTACTCCGTCCCATAATGTA 57.156 36.000 0.00 0.00 0.00 2.29
4274 4423 7.844493 AATACTACTCCGTCCCATAATGTAA 57.156 36.000 0.00 0.00 0.00 2.41
4275 4424 5.786264 ACTACTCCGTCCCATAATGTAAG 57.214 43.478 0.00 0.00 0.00 2.34
4276 4425 5.452255 ACTACTCCGTCCCATAATGTAAGA 58.548 41.667 0.00 0.00 0.00 2.10
4277 4426 4.667519 ACTCCGTCCCATAATGTAAGAC 57.332 45.455 0.00 0.00 0.00 3.01
4279 4428 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4280 4429 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4281 4430 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4282 4431 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4283 4432 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4284 4433 6.019152 CGTCCCATAATGTAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
4285 4434 5.798434 GTCCCATAATGTAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
4286 4435 5.473846 TCCCATAATGTAAGACGTTTTTGCA 59.526 36.000 0.00 1.87 0.00 4.08
4287 4436 6.016192 TCCCATAATGTAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
4288 4437 6.307800 CCCATAATGTAAGACGTTTTTGCAAG 59.692 38.462 0.00 0.00 0.00 4.01
4289 4438 6.183359 CCATAATGTAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
4290 4439 4.568152 ATGTAAGACGTTTTTGCAAGCT 57.432 36.364 0.00 0.00 0.00 3.74
4291 4440 5.682943 ATGTAAGACGTTTTTGCAAGCTA 57.317 34.783 0.00 0.00 0.00 3.32
4292 4441 5.090652 TGTAAGACGTTTTTGCAAGCTAG 57.909 39.130 0.00 0.00 0.00 3.42
4293 4442 4.573201 TGTAAGACGTTTTTGCAAGCTAGT 59.427 37.500 0.00 0.00 0.00 2.57
4294 4443 4.632538 AAGACGTTTTTGCAAGCTAGTT 57.367 36.364 0.00 0.00 0.00 2.24
4295 4444 4.632538 AGACGTTTTTGCAAGCTAGTTT 57.367 36.364 0.00 0.00 0.00 2.66
4296 4445 5.744666 AGACGTTTTTGCAAGCTAGTTTA 57.255 34.783 0.00 0.00 0.00 2.01
4297 4446 6.126568 AGACGTTTTTGCAAGCTAGTTTAA 57.873 33.333 0.00 0.00 0.00 1.52
4298 4447 5.969435 AGACGTTTTTGCAAGCTAGTTTAAC 59.031 36.000 0.00 0.00 0.00 2.01
4299 4448 5.886992 ACGTTTTTGCAAGCTAGTTTAACT 58.113 33.333 2.32 2.32 0.00 2.24
4300 4449 6.327154 ACGTTTTTGCAAGCTAGTTTAACTT 58.673 32.000 1.94 0.00 0.00 2.66
4301 4450 7.474190 ACGTTTTTGCAAGCTAGTTTAACTTA 58.526 30.769 1.94 0.00 0.00 2.24
4302 4451 7.430211 ACGTTTTTGCAAGCTAGTTTAACTTAC 59.570 33.333 1.94 0.00 0.00 2.34
4303 4452 7.429920 CGTTTTTGCAAGCTAGTTTAACTTACA 59.570 33.333 1.94 0.00 0.00 2.41
4304 4453 9.078753 GTTTTTGCAAGCTAGTTTAACTTACAA 57.921 29.630 1.94 0.00 0.00 2.41
4305 4454 9.640963 TTTTTGCAAGCTAGTTTAACTTACAAA 57.359 25.926 1.94 3.46 35.77 2.83
4306 4455 9.640963 TTTTGCAAGCTAGTTTAACTTACAAAA 57.359 25.926 1.94 11.23 41.15 2.44
4307 4456 9.640963 TTTGCAAGCTAGTTTAACTTACAAAAA 57.359 25.926 1.94 0.00 35.05 1.94
4308 4457 8.623310 TGCAAGCTAGTTTAACTTACAAAAAC 57.377 30.769 1.94 0.00 34.13 2.43
4309 4458 7.429920 TGCAAGCTAGTTTAACTTACAAAAACG 59.570 33.333 1.94 0.00 37.99 3.60
4310 4459 7.430211 GCAAGCTAGTTTAACTTACAAAAACGT 59.570 33.333 1.94 0.00 37.99 3.99
4311 4460 8.940924 CAAGCTAGTTTAACTTACAAAAACGTC 58.059 33.333 1.94 0.00 37.99 4.34
4312 4461 8.429493 AGCTAGTTTAACTTACAAAAACGTCT 57.571 30.769 1.94 0.00 37.99 4.18
4313 4462 8.886719 AGCTAGTTTAACTTACAAAAACGTCTT 58.113 29.630 1.94 0.00 37.99 3.01
4322 4471 9.887406 AACTTACAAAAACGTCTTACATTATGG 57.113 29.630 0.00 0.00 0.00 2.74
4323 4472 8.508875 ACTTACAAAAACGTCTTACATTATGGG 58.491 33.333 0.00 0.00 0.00 4.00
4324 4473 8.618702 TTACAAAAACGTCTTACATTATGGGA 57.381 30.769 0.00 0.00 0.00 4.37
4325 4474 6.905578 ACAAAAACGTCTTACATTATGGGAC 58.094 36.000 0.00 1.75 0.00 4.46
4328 4477 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4329 4478 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4330 4479 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4331 4480 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4332 4481 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4333 4482 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4334 4483 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
4335 4484 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4336 4485 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
4337 4486 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
4498 4647 1.040893 TCCGGATTCGAAGCAGGCTA 61.041 55.000 25.09 8.66 39.00 3.93
4895 5045 4.534500 TGTATGGATGGTAGTGTTCTGGTT 59.466 41.667 0.00 0.00 0.00 3.67
4921 5071 8.595362 TTCTGGATATCTGAAAGTCTGAAGTA 57.405 34.615 2.05 0.00 33.76 2.24
4972 5122 0.042131 TCGGGAAGGAAGGAGCCTAA 59.958 55.000 0.00 0.00 37.26 2.69
5018 5174 9.570468 AAGATTCACAGGTAGAGATAATACGTA 57.430 33.333 0.00 0.00 0.00 3.57
5020 5176 8.687292 ATTCACAGGTAGAGATAATACGTACA 57.313 34.615 0.00 0.00 0.00 2.90
5038 5194 3.710209 ACATTGGAGAAGGAACAGAGG 57.290 47.619 0.00 0.00 0.00 3.69
5070 5226 3.990318 AGAAAAAGAACAGAAAGCCGG 57.010 42.857 0.00 0.00 0.00 6.13
5071 5227 2.623416 AGAAAAAGAACAGAAAGCCGGG 59.377 45.455 2.18 0.00 0.00 5.73
5085 5241 3.154827 AGCCGGGAAATGAAGAAAAGA 57.845 42.857 2.18 0.00 0.00 2.52
5090 5246 5.177511 GCCGGGAAATGAAGAAAAGAAAAAG 59.822 40.000 2.18 0.00 0.00 2.27
5123 5279 0.755327 GCCCGGCCATATTTCAAGGT 60.755 55.000 2.24 0.00 0.00 3.50
5153 5310 8.850454 TCTAGTTTTTCTGTTTTTCGATTTGG 57.150 30.769 0.00 0.00 0.00 3.28
5155 5312 7.899178 AGTTTTTCTGTTTTTCGATTTGGTT 57.101 28.000 0.00 0.00 0.00 3.67
5172 5329 7.305763 CGATTTGGTTTAGGTCGTTTCTTTTTG 60.306 37.037 0.00 0.00 0.00 2.44
5193 5350 2.248248 CCCAGTCCAGTCTTGACACTA 58.752 52.381 6.82 0.00 35.15 2.74
5194 5351 2.232452 CCCAGTCCAGTCTTGACACTAG 59.768 54.545 6.82 0.00 35.15 2.57
5195 5352 2.894126 CCAGTCCAGTCTTGACACTAGT 59.106 50.000 6.82 0.00 35.15 2.57
5196 5353 3.305676 CCAGTCCAGTCTTGACACTAGTG 60.306 52.174 21.44 21.44 35.15 2.74
5198 5355 3.961408 AGTCCAGTCTTGACACTAGTGTT 59.039 43.478 28.49 13.24 45.05 3.32
5199 5356 4.406003 AGTCCAGTCTTGACACTAGTGTTT 59.594 41.667 28.49 7.90 45.05 2.83
5200 5357 5.104900 AGTCCAGTCTTGACACTAGTGTTTT 60.105 40.000 28.49 7.10 45.05 2.43
5201 5358 5.585047 GTCCAGTCTTGACACTAGTGTTTTT 59.415 40.000 28.49 6.70 45.05 1.94
5434 5601 2.205022 TGCTTTTATCTGTGCTGCCT 57.795 45.000 0.00 0.00 0.00 4.75
5527 5694 3.654321 TCTGATGGACCATATGCTCCAAT 59.346 43.478 21.02 11.32 40.05 3.16
5715 5882 4.511454 GTGTTATCTGAACAGAGTGCACAA 59.489 41.667 21.04 0.00 41.33 3.33
5723 5890 2.154462 ACAGAGTGCACAATTGTAGCC 58.846 47.619 21.04 15.93 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.754382 CACTGGATTGCTTAAATTATATGCTTT 57.246 29.630 0.00 0.00 0.00 3.51
35 36 5.991933 TTTTATGCCACTGGATTGCTTAA 57.008 34.783 0.00 0.00 0.00 1.85
39 40 3.924144 TGTTTTTATGCCACTGGATTGC 58.076 40.909 0.00 0.00 0.00 3.56
52 53 9.100554 CCATGTGTTTATCATGCATGTTTTTAT 57.899 29.630 25.43 13.92 40.63 1.40
80 81 6.152932 TGTTATTACTCGACACCTTATCCC 57.847 41.667 0.00 0.00 0.00 3.85
92 93 5.109210 TGCTTCTGGACATGTTATTACTCG 58.891 41.667 0.00 0.00 0.00 4.18
100 101 3.499338 TCCATTTGCTTCTGGACATGTT 58.501 40.909 0.00 0.00 36.63 2.71
103 104 6.131264 TCATAATCCATTTGCTTCTGGACAT 58.869 36.000 4.20 0.91 44.06 3.06
139 140 6.991531 TGGAGCTTTGTATTTGCATTTTCTTT 59.008 30.769 0.00 0.00 0.00 2.52
150 151 4.400567 GGCAGATCTTGGAGCTTTGTATTT 59.599 41.667 0.00 0.00 0.00 1.40
211 212 7.993101 TCCTCTCAATTAAAAGATTCTGCATG 58.007 34.615 0.00 0.00 0.00 4.06
217 218 8.619546 CCTGACATCCTCTCAATTAAAAGATTC 58.380 37.037 0.00 0.00 0.00 2.52
221 222 6.881065 TGTCCTGACATCCTCTCAATTAAAAG 59.119 38.462 0.00 0.00 36.21 2.27
242 243 4.081752 TCCAACCATGCAATTACATTGTCC 60.082 41.667 0.00 0.00 42.20 4.02
313 314 2.450476 ACACCCTTTGCCATGATTCTC 58.550 47.619 0.00 0.00 0.00 2.87
316 317 2.328319 ACAACACCCTTTGCCATGATT 58.672 42.857 0.00 0.00 0.00 2.57
337 338 1.276138 TCGCCTCTTCATTTCAGCAGA 59.724 47.619 0.00 0.00 0.00 4.26
346 347 2.224621 CCCATACCATTCGCCTCTTCAT 60.225 50.000 0.00 0.00 0.00 2.57
358 359 6.448061 TGCATATATTCTTCCTCCCATACCAT 59.552 38.462 0.00 0.00 0.00 3.55
426 435 5.407995 CGGTTTTTATGCACAAAATCATGGT 59.592 36.000 3.30 0.00 0.00 3.55
478 487 4.039488 TGTTCTCTTAGCGAAACTAACCCA 59.961 41.667 0.00 0.00 35.89 4.51
547 556 3.379452 GAGAATGGGGGAAGAGAGAGAA 58.621 50.000 0.00 0.00 0.00 2.87
563 577 2.447047 GAGAGAGAGAGGGAGGGAGAAT 59.553 54.545 0.00 0.00 0.00 2.40
569 583 2.105477 CTGAGAGAGAGAGAGAGGGAGG 59.895 59.091 0.00 0.00 0.00 4.30
573 587 2.483714 CGGTCTGAGAGAGAGAGAGAGG 60.484 59.091 0.00 0.00 0.00 3.69
587 631 1.107538 GGATGGGTCGATCGGTCTGA 61.108 60.000 16.41 0.00 0.00 3.27
661 705 1.074566 ACTGCCTGGAGAAAGGGAAAG 59.925 52.381 0.00 0.00 37.20 2.62
664 708 0.473694 TCACTGCCTGGAGAAAGGGA 60.474 55.000 0.00 0.00 37.84 4.20
681 725 1.152777 CAACAAGTGGGGCCTGTCA 60.153 57.895 0.84 0.00 0.00 3.58
686 730 1.227527 GCAAACAACAAGTGGGGCC 60.228 57.895 0.00 0.00 0.00 5.80
692 736 1.065551 GCTTCGAGGCAAACAACAAGT 59.934 47.619 15.47 0.00 0.00 3.16
703 747 3.179939 GGTCGTTCGCTTCGAGGC 61.180 66.667 9.88 9.88 37.14 4.70
704 748 2.506438 GGGTCGTTCGCTTCGAGG 60.506 66.667 0.00 0.00 37.14 4.63
726 770 3.433598 GGATGTTGCCTACTAGCATGGAA 60.434 47.826 0.00 0.00 43.64 3.53
728 772 2.105477 AGGATGTTGCCTACTAGCATGG 59.895 50.000 0.00 0.00 43.64 3.66
729 773 3.482156 AGGATGTTGCCTACTAGCATG 57.518 47.619 0.00 0.00 43.64 4.06
730 774 4.164988 AGAAAGGATGTTGCCTACTAGCAT 59.835 41.667 0.00 0.00 43.64 3.79
737 782 1.277842 TGCGAGAAAGGATGTTGCCTA 59.722 47.619 0.00 0.00 37.26 3.93
739 784 1.098050 ATGCGAGAAAGGATGTTGCC 58.902 50.000 0.00 0.00 30.53 4.52
740 785 2.032178 GGTATGCGAGAAAGGATGTTGC 59.968 50.000 0.00 0.00 32.27 4.17
771 816 2.900546 AGCCCAATTATCCTACTCCTCG 59.099 50.000 0.00 0.00 0.00 4.63
775 820 4.835615 TCTCTCAGCCCAATTATCCTACTC 59.164 45.833 0.00 0.00 0.00 2.59
818 863 2.480416 GCTACTCCAGAGGAATGTGTCG 60.480 54.545 0.00 0.00 0.00 4.35
820 865 2.499289 CTGCTACTCCAGAGGAATGTGT 59.501 50.000 0.00 0.00 34.77 3.72
822 867 1.484240 GCTGCTACTCCAGAGGAATGT 59.516 52.381 0.00 0.00 34.77 2.71
830 877 0.755686 CCTAAGGGCTGCTACTCCAG 59.244 60.000 0.00 0.50 35.93 3.86
888 935 2.808543 CAGCCGTTAAAACTGCTCTCTT 59.191 45.455 8.57 0.00 44.55 2.85
914 961 5.357878 GCCATCCATCTGTGTGATTTAGAAA 59.642 40.000 0.00 0.00 32.05 2.52
926 973 2.662866 CATTTCTGGCCATCCATCTGT 58.337 47.619 5.51 0.00 42.51 3.41
994 1041 1.000506 TCGAGAACCCTAGTTGCACAC 59.999 52.381 0.00 0.00 35.94 3.82
1029 1076 2.162681 CTCGCTCAGTTGGGGAATTTT 58.837 47.619 0.00 0.00 0.00 1.82
1769 1816 1.559682 GTAGGTCCATTTGGAGAGGCA 59.440 52.381 0.00 0.00 46.49 4.75
1787 1834 3.306917 TTCGACGGCTTCAGAATTGTA 57.693 42.857 0.00 0.00 0.00 2.41
1899 1946 7.391833 AGTCGATTATGAAAAGAAAAAGAGGCT 59.608 33.333 0.00 0.00 0.00 4.58
1942 1989 7.944729 AATAACAATTGAATAGGCTGTCTGT 57.055 32.000 13.59 0.00 0.00 3.41
2090 2156 1.641577 GGGAGTGCTTTACTACTGCG 58.358 55.000 0.00 0.00 40.36 5.18
2096 2162 3.157087 CACAATTGGGGAGTGCTTTACT 58.843 45.455 10.83 0.00 44.02 2.24
2103 2169 4.517663 TGGCACAATTGGGGAGTG 57.482 55.556 10.31 0.00 31.92 3.51
2238 2304 1.975680 TGGGTTACAGTCTCAGGGAAC 59.024 52.381 0.00 0.00 0.00 3.62
2243 2309 8.883731 CAACTATAATTTGGGTTACAGTCTCAG 58.116 37.037 0.00 0.00 0.00 3.35
2337 2403 9.027129 CATTGTGGTCAATTATAAAGAAGCATG 57.973 33.333 0.00 0.00 41.66 4.06
2378 2444 4.223923 ACAAGTATTTCTGGACAGAGGGAG 59.776 45.833 1.92 0.00 38.88 4.30
2379 2445 4.168101 ACAAGTATTTCTGGACAGAGGGA 58.832 43.478 1.92 0.00 38.88 4.20
2380 2446 4.020218 TGACAAGTATTTCTGGACAGAGGG 60.020 45.833 1.92 0.00 38.88 4.30
2381 2447 5.152623 TGACAAGTATTTCTGGACAGAGG 57.847 43.478 1.92 0.00 38.88 3.69
2382 2448 6.401394 TGATGACAAGTATTTCTGGACAGAG 58.599 40.000 1.92 0.00 38.88 3.35
2383 2449 6.358974 TGATGACAAGTATTTCTGGACAGA 57.641 37.500 0.00 0.00 35.27 3.41
2384 2450 7.439157 TTTGATGACAAGTATTTCTGGACAG 57.561 36.000 0.00 0.00 37.32 3.51
2385 2451 7.815840 TTTTGATGACAAGTATTTCTGGACA 57.184 32.000 0.00 0.00 37.32 4.02
2386 2452 8.299570 ACATTTTGATGACAAGTATTTCTGGAC 58.700 33.333 0.00 0.00 37.32 4.02
2387 2453 8.408043 ACATTTTGATGACAAGTATTTCTGGA 57.592 30.769 0.00 0.00 37.32 3.86
2396 2462 8.531146 CCCCTTTTATACATTTTGATGACAAGT 58.469 33.333 0.00 0.00 37.32 3.16
2397 2463 8.748412 TCCCCTTTTATACATTTTGATGACAAG 58.252 33.333 0.00 0.00 37.32 3.16
2398 2464 8.657387 TCCCCTTTTATACATTTTGATGACAA 57.343 30.769 0.00 0.00 0.00 3.18
2399 2465 8.694540 CATCCCCTTTTATACATTTTGATGACA 58.305 33.333 0.00 0.00 0.00 3.58
2400 2466 8.695456 ACATCCCCTTTTATACATTTTGATGAC 58.305 33.333 0.00 0.00 32.39 3.06
2401 2467 8.837099 ACATCCCCTTTTATACATTTTGATGA 57.163 30.769 0.00 0.00 32.39 2.92
2410 2476 9.615660 ACATCTAGATACATCCCCTTTTATACA 57.384 33.333 4.54 0.00 0.00 2.29
2418 2484 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
2456 2522 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2463 2529 9.045223 CGAGAATACTTGTCATCAAAATGGATA 57.955 33.333 0.00 0.00 33.42 2.59
2464 2530 7.012704 CCGAGAATACTTGTCATCAAAATGGAT 59.987 37.037 0.00 0.00 33.42 3.41
2465 2531 6.316140 CCGAGAATACTTGTCATCAAAATGGA 59.684 38.462 0.00 0.00 33.42 3.41
2466 2532 6.316140 TCCGAGAATACTTGTCATCAAAATGG 59.684 38.462 0.00 0.00 33.42 3.16
2467 2533 7.182761 GTCCGAGAATACTTGTCATCAAAATG 58.817 38.462 0.00 0.00 32.87 2.32
2468 2534 6.036083 CGTCCGAGAATACTTGTCATCAAAAT 59.964 38.462 0.00 0.00 32.87 1.82
2469 2535 5.347635 CGTCCGAGAATACTTGTCATCAAAA 59.652 40.000 0.00 0.00 32.87 2.44
2470 2536 4.862574 CGTCCGAGAATACTTGTCATCAAA 59.137 41.667 0.00 0.00 32.87 2.69
2471 2537 4.421058 CGTCCGAGAATACTTGTCATCAA 58.579 43.478 0.00 0.00 0.00 2.57
2472 2538 3.181490 CCGTCCGAGAATACTTGTCATCA 60.181 47.826 0.00 0.00 0.00 3.07
2473 2539 3.066342 TCCGTCCGAGAATACTTGTCATC 59.934 47.826 0.00 0.00 0.00 2.92
2474 2540 3.021695 TCCGTCCGAGAATACTTGTCAT 58.978 45.455 0.00 0.00 0.00 3.06
2475 2541 2.422479 CTCCGTCCGAGAATACTTGTCA 59.578 50.000 0.00 0.00 41.63 3.58
2476 2542 2.223525 CCTCCGTCCGAGAATACTTGTC 60.224 54.545 0.00 0.00 41.63 3.18
2477 2543 1.749634 CCTCCGTCCGAGAATACTTGT 59.250 52.381 0.00 0.00 41.63 3.16
2478 2544 1.536284 GCCTCCGTCCGAGAATACTTG 60.536 57.143 0.00 0.00 41.63 3.16
2479 2545 0.745468 GCCTCCGTCCGAGAATACTT 59.255 55.000 0.00 0.00 41.63 2.24
2480 2546 0.395311 TGCCTCCGTCCGAGAATACT 60.395 55.000 0.00 0.00 41.63 2.12
2481 2547 0.030908 CTGCCTCCGTCCGAGAATAC 59.969 60.000 0.00 0.00 41.63 1.89
2482 2548 0.395311 ACTGCCTCCGTCCGAGAATA 60.395 55.000 0.00 0.00 41.63 1.75
2483 2549 0.395311 TACTGCCTCCGTCCGAGAAT 60.395 55.000 0.00 0.00 41.63 2.40
2484 2550 0.395311 ATACTGCCTCCGTCCGAGAA 60.395 55.000 0.00 0.00 41.63 2.87
2485 2551 0.395311 AATACTGCCTCCGTCCGAGA 60.395 55.000 0.00 0.00 41.63 4.04
2486 2552 0.460311 AAATACTGCCTCCGTCCGAG 59.540 55.000 0.00 0.00 38.46 4.63
2487 2553 0.899720 AAAATACTGCCTCCGTCCGA 59.100 50.000 0.00 0.00 0.00 4.55
2488 2554 2.589798 TAAAATACTGCCTCCGTCCG 57.410 50.000 0.00 0.00 0.00 4.79
2489 2555 3.376234 GGTTTAAAATACTGCCTCCGTCC 59.624 47.826 0.00 0.00 0.00 4.79
2490 2556 4.259356 AGGTTTAAAATACTGCCTCCGTC 58.741 43.478 0.00 0.00 0.00 4.79
2491 2557 4.296621 AGGTTTAAAATACTGCCTCCGT 57.703 40.909 0.00 0.00 0.00 4.69
2492 2558 5.469084 GGATAGGTTTAAAATACTGCCTCCG 59.531 44.000 0.00 0.00 0.00 4.63
2493 2559 6.486993 CAGGATAGGTTTAAAATACTGCCTCC 59.513 42.308 0.00 3.33 0.00 4.30
2494 2560 7.226918 GTCAGGATAGGTTTAAAATACTGCCTC 59.773 40.741 5.91 0.00 0.00 4.70
2495 2561 7.054751 GTCAGGATAGGTTTAAAATACTGCCT 58.945 38.462 5.91 2.74 0.00 4.75
2496 2562 6.826741 TGTCAGGATAGGTTTAAAATACTGCC 59.173 38.462 5.91 0.00 0.00 4.85
2497 2563 7.553044 AGTGTCAGGATAGGTTTAAAATACTGC 59.447 37.037 5.91 3.33 0.00 4.40
2498 2564 9.449719 AAGTGTCAGGATAGGTTTAAAATACTG 57.550 33.333 4.73 4.73 0.00 2.74
2502 2568 8.088365 GCAAAAGTGTCAGGATAGGTTTAAAAT 58.912 33.333 0.00 0.00 0.00 1.82
2567 2633 8.439971 AGTTGAAATCAGGCCTATGATGTATTA 58.560 33.333 3.98 0.00 39.84 0.98
2638 2704 2.639839 AGTCCAGTAGCTGTGTTGGAAT 59.360 45.455 10.62 7.91 41.10 3.01
2661 2727 3.073274 ACCTGGCCTGATTTGTTCTAC 57.927 47.619 11.88 0.00 0.00 2.59
2766 2832 0.255890 GGACCAAGGGCTGAGCATAA 59.744 55.000 6.82 0.00 0.00 1.90
2767 2833 0.913934 TGGACCAAGGGCTGAGCATA 60.914 55.000 6.82 0.00 0.00 3.14
2927 2993 6.238103 CCTGTAACCAACTTCTGTATAATGCG 60.238 42.308 0.00 0.00 0.00 4.73
2930 2996 6.717289 TGCCTGTAACCAACTTCTGTATAAT 58.283 36.000 0.00 0.00 0.00 1.28
3003 3069 6.011122 AGACTTCATAAGCCAAATCCAGAT 57.989 37.500 0.00 0.00 0.00 2.90
3085 3151 7.382218 AGCAAGTAGTTTCATAACACAAATTGC 59.618 33.333 11.58 11.58 40.70 3.56
3204 3270 9.716531 TTGATGATCATATTTTACTAGGAGCTG 57.283 33.333 8.54 0.00 0.00 4.24
3315 3381 5.488919 TGAACCCAGAACTTAGAAGATCCAT 59.511 40.000 0.00 0.00 0.00 3.41
3363 3429 5.043732 ACCCAATAGACCAATACCAAATCCA 60.044 40.000 0.00 0.00 0.00 3.41
3487 3554 3.354948 TGTGCAAGATAAGACCTGCAT 57.645 42.857 0.00 0.00 34.72 3.96
3510 3577 6.872920 TGGTCATGGGCATAAAATAGAAAAC 58.127 36.000 0.00 0.00 0.00 2.43
3556 3623 5.878116 TGGTGCCAGTACTACATAATTTCAC 59.122 40.000 0.00 0.00 0.00 3.18
3583 3650 4.158384 GTGTACGACAGAAAAATGGCATG 58.842 43.478 0.00 0.00 0.00 4.06
3676 3743 6.187125 AGACATTGTACATAGCAGCAAAAG 57.813 37.500 0.00 0.00 0.00 2.27
3679 3746 7.770433 AGAAATAGACATTGTACATAGCAGCAA 59.230 33.333 0.00 0.00 0.00 3.91
3711 3778 9.519191 TCTGATGAATCCAAAAGAAGTATGAAA 57.481 29.630 0.00 0.00 0.00 2.69
3729 3796 4.391830 GTCAACAGCGGTTTATCTGATGAA 59.608 41.667 0.00 0.00 41.53 2.57
3750 3817 0.954452 CACCAAACAGGGCTTCAGTC 59.046 55.000 0.00 0.00 43.89 3.51
3880 4000 4.260985 TGTTATGCCAAGACCACAGTATG 58.739 43.478 0.00 0.00 46.00 2.39
3926 4046 1.308998 CGCCAAAACAGGTTCTCAGT 58.691 50.000 0.00 0.00 0.00 3.41
3943 4063 1.052768 CTTTTACAACGTCGCAGCGC 61.053 55.000 10.87 0.00 34.88 5.92
3952 4072 2.527442 GCTAGCCAGCTTTTACAACG 57.473 50.000 2.29 0.00 44.93 4.10
3989 4109 2.337583 GCTGATCAGTTGCTTACGTGA 58.662 47.619 23.38 0.00 0.00 4.35
4046 4193 2.370189 GTCATTATCCTCCTCCCCACTG 59.630 54.545 0.00 0.00 0.00 3.66
4107 4254 2.677542 AAAAAGAACCCCAGACCTCC 57.322 50.000 0.00 0.00 0.00 4.30
4257 4406 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4258 4407 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4261 4410 5.798434 GCAAAAACGTCTTACATTATGGGAC 59.202 40.000 0.00 1.75 0.00 4.46
4262 4411 5.473846 TGCAAAAACGTCTTACATTATGGGA 59.526 36.000 0.00 0.00 0.00 4.37
4263 4412 5.704888 TGCAAAAACGTCTTACATTATGGG 58.295 37.500 0.00 0.00 0.00 4.00
4264 4413 6.183359 GCTTGCAAAAACGTCTTACATTATGG 60.183 38.462 0.00 0.00 0.00 2.74
4265 4414 6.582295 AGCTTGCAAAAACGTCTTACATTATG 59.418 34.615 0.00 0.00 0.00 1.90
4266 4415 6.677913 AGCTTGCAAAAACGTCTTACATTAT 58.322 32.000 0.00 0.00 0.00 1.28
4267 4416 6.067263 AGCTTGCAAAAACGTCTTACATTA 57.933 33.333 0.00 0.00 0.00 1.90
4268 4417 4.932146 AGCTTGCAAAAACGTCTTACATT 58.068 34.783 0.00 0.00 0.00 2.71
4269 4418 4.568152 AGCTTGCAAAAACGTCTTACAT 57.432 36.364 0.00 0.00 0.00 2.29
4270 4419 4.573201 ACTAGCTTGCAAAAACGTCTTACA 59.427 37.500 0.00 0.00 0.00 2.41
4271 4420 5.091910 ACTAGCTTGCAAAAACGTCTTAC 57.908 39.130 0.00 0.00 0.00 2.34
4272 4421 5.744666 AACTAGCTTGCAAAAACGTCTTA 57.255 34.783 0.00 0.00 0.00 2.10
4273 4422 4.632538 AACTAGCTTGCAAAAACGTCTT 57.367 36.364 0.00 0.00 0.00 3.01
4274 4423 4.632538 AAACTAGCTTGCAAAAACGTCT 57.367 36.364 0.00 0.00 0.00 4.18
4275 4424 5.969435 AGTTAAACTAGCTTGCAAAAACGTC 59.031 36.000 0.00 0.00 0.00 4.34
4276 4425 5.886992 AGTTAAACTAGCTTGCAAAAACGT 58.113 33.333 0.00 0.00 0.00 3.99
4277 4426 6.806120 AAGTTAAACTAGCTTGCAAAAACG 57.194 33.333 0.00 0.00 0.00 3.60
4278 4427 8.623310 TGTAAGTTAAACTAGCTTGCAAAAAC 57.377 30.769 0.00 0.00 38.28 2.43
4282 4431 9.078753 GTTTTTGTAAGTTAAACTAGCTTGCAA 57.921 29.630 0.00 0.00 44.74 4.08
4283 4432 7.429920 CGTTTTTGTAAGTTAAACTAGCTTGCA 59.570 33.333 0.00 0.00 39.12 4.08
4284 4433 7.430211 ACGTTTTTGTAAGTTAAACTAGCTTGC 59.570 33.333 0.00 0.00 33.52 4.01
4285 4434 8.831000 ACGTTTTTGTAAGTTAAACTAGCTTG 57.169 30.769 0.00 0.00 31.49 4.01
4286 4435 8.886719 AGACGTTTTTGTAAGTTAAACTAGCTT 58.113 29.630 0.00 0.00 33.65 3.74
4287 4436 8.429493 AGACGTTTTTGTAAGTTAAACTAGCT 57.571 30.769 0.00 0.00 31.33 3.32
4296 4445 9.887406 CCATAATGTAAGACGTTTTTGTAAGTT 57.113 29.630 0.00 0.00 0.00 2.66
4297 4446 8.508875 CCCATAATGTAAGACGTTTTTGTAAGT 58.491 33.333 0.00 0.00 0.00 2.24
4298 4447 8.723311 TCCCATAATGTAAGACGTTTTTGTAAG 58.277 33.333 0.00 0.00 0.00 2.34
4299 4448 8.505625 GTCCCATAATGTAAGACGTTTTTGTAA 58.494 33.333 0.00 0.00 0.00 2.41
4300 4449 7.148606 CGTCCCATAATGTAAGACGTTTTTGTA 60.149 37.037 0.00 0.00 43.89 2.41
4301 4450 6.347888 CGTCCCATAATGTAAGACGTTTTTGT 60.348 38.462 0.00 0.00 43.89 2.83
4302 4451 6.019152 CGTCCCATAATGTAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
4303 4452 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4304 4453 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4305 4454 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4306 4455 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4307 4456 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4309 4458 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4310 4459 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4311 4460 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4312 4461 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4313 4462 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4314 4463 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4315 4464 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4316 4465 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4317 4466 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4318 4467 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4319 4468 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4320 4469 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4321 4470 0.535797 CAAAGTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
4322 4471 0.108281 GCAAAGTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
4323 4472 0.896226 AGCAAAGTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
4324 4473 1.823610 GTAGCAAAGTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
4325 4474 1.136500 GGTAGCAAAGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
4326 4475 2.185387 TGGTAGCAAAGTACTCCCTCC 58.815 52.381 0.00 0.00 0.00 4.30
4327 4476 3.975168 TTGGTAGCAAAGTACTCCCTC 57.025 47.619 4.54 0.00 0.00 4.30
4328 4477 3.393278 TGTTTGGTAGCAAAGTACTCCCT 59.607 43.478 19.87 0.00 0.00 4.20
4329 4478 3.746940 TGTTTGGTAGCAAAGTACTCCC 58.253 45.455 19.87 7.52 0.00 4.30
4330 4479 3.751698 CCTGTTTGGTAGCAAAGTACTCC 59.248 47.826 19.87 8.19 0.00 3.85
4331 4480 3.751698 CCCTGTTTGGTAGCAAAGTACTC 59.248 47.826 19.87 8.87 0.00 2.59
4332 4481 3.751518 CCCTGTTTGGTAGCAAAGTACT 58.248 45.455 19.87 0.00 0.00 2.73
4333 4482 2.228103 GCCCTGTTTGGTAGCAAAGTAC 59.772 50.000 19.87 10.30 0.00 2.73
4334 4483 2.510613 GCCCTGTTTGGTAGCAAAGTA 58.489 47.619 19.87 11.34 0.00 2.24
4335 4484 1.328279 GCCCTGTTTGGTAGCAAAGT 58.672 50.000 19.87 0.00 0.00 2.66
4336 4485 0.603065 GGCCCTGTTTGGTAGCAAAG 59.397 55.000 19.87 9.59 0.00 2.77
4337 4486 0.187361 AGGCCCTGTTTGGTAGCAAA 59.813 50.000 15.83 15.83 0.00 3.68
4410 4559 3.498397 ACTTGTGGAGTTCTGCAATTACG 59.502 43.478 0.00 0.00 33.92 3.18
4498 4647 1.002087 AGGAAGTTTCGAAGATGCCGT 59.998 47.619 0.00 0.00 35.04 5.68
4605 4754 2.931105 TGCCCGGACCTTTGGCTA 60.931 61.111 0.73 2.71 45.56 3.93
4895 5045 7.911651 ACTTCAGACTTTCAGATATCCAGAAA 58.088 34.615 15.94 15.94 0.00 2.52
4972 5122 4.338118 TCTTTCGGATGCTGTTTTTCAACT 59.662 37.500 0.00 0.00 33.58 3.16
5018 5174 2.982488 ACCTCTGTTCCTTCTCCAATGT 59.018 45.455 0.00 0.00 0.00 2.71
5020 5176 5.284582 AGATACCTCTGTTCCTTCTCCAAT 58.715 41.667 0.00 0.00 0.00 3.16
5085 5241 5.336451 CCGGGCTAAGCTGTAATTTCTTTTT 60.336 40.000 0.00 0.00 0.00 1.94
5090 5246 1.333931 GCCGGGCTAAGCTGTAATTTC 59.666 52.381 12.87 0.00 0.00 2.17
5140 5297 5.513376 ACGACCTAAACCAAATCGAAAAAC 58.487 37.500 0.00 0.00 36.64 2.43
5146 5303 5.352643 AAGAAACGACCTAAACCAAATCG 57.647 39.130 0.00 0.00 38.71 3.34
5153 5310 4.046462 GGGCAAAAAGAAACGACCTAAAC 58.954 43.478 0.00 0.00 0.00 2.01
5155 5312 3.288964 TGGGCAAAAAGAAACGACCTAA 58.711 40.909 0.00 0.00 0.00 2.69
5172 5329 0.603975 GTGTCAAGACTGGACTGGGC 60.604 60.000 11.34 0.00 36.26 5.36
5195 5352 0.181587 TGAGCCCGGAGTGAAAAACA 59.818 50.000 0.73 0.00 0.00 2.83
5196 5353 0.875059 CTGAGCCCGGAGTGAAAAAC 59.125 55.000 0.73 0.00 0.00 2.43
5197 5354 0.889186 GCTGAGCCCGGAGTGAAAAA 60.889 55.000 0.73 0.00 0.00 1.94
5198 5355 1.302511 GCTGAGCCCGGAGTGAAAA 60.303 57.895 0.73 0.00 0.00 2.29
5199 5356 2.347490 GCTGAGCCCGGAGTGAAA 59.653 61.111 0.73 0.00 0.00 2.69
5200 5357 3.706373 GGCTGAGCCCGGAGTGAA 61.706 66.667 13.77 0.00 44.06 3.18
5527 5694 7.437713 CCCTAGATATTATTGTGATGGGCTA 57.562 40.000 0.00 0.00 0.00 3.93
5652 5819 4.026052 ACTTATTCTGGAATTGCCCCTTG 58.974 43.478 1.01 0.00 34.97 3.61
5715 5882 0.541392 TGCATCTCACCGGCTACAAT 59.459 50.000 0.00 0.00 0.00 2.71
5723 5890 4.000331 AGGAAATCTATGCATCTCACCG 58.000 45.455 0.19 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.