Multiple sequence alignment - TraesCS7B01G186900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G186900 chr7B 100.000 4350 0 0 1 4350 312444729 312440380 0.000000e+00 8034.0
1 TraesCS7B01G186900 chr7B 90.000 130 9 4 3016 3145 312441498 312441373 9.680000e-37 165.0
2 TraesCS7B01G186900 chr7B 90.000 130 9 4 3232 3357 312441714 312441585 9.680000e-37 165.0
3 TraesCS7B01G186900 chr7B 94.737 38 2 0 4040 4077 312440546 312440509 4.700000e-05 60.2
4 TraesCS7B01G186900 chr7B 94.737 38 2 0 4184 4221 312440690 312440653 4.700000e-05 60.2
5 TraesCS7B01G186900 chr7D 97.418 3021 53 10 767 3774 358473203 358476211 0.000000e+00 5123.0
6 TraesCS7B01G186900 chr7D 92.262 336 12 3 364 691 340236074 340235745 8.520000e-127 464.0
7 TraesCS7B01G186900 chr7D 94.634 205 9 2 164 366 340236770 340236566 2.520000e-82 316.0
8 TraesCS7B01G186900 chr7D 90.000 130 9 4 3016 3145 358475670 358475795 9.680000e-37 165.0
9 TraesCS7B01G186900 chr7D 97.368 38 0 1 125 162 340236589 340236625 3.630000e-06 63.9
10 TraesCS7B01G186900 chr7A 96.769 2600 64 11 767 3357 370540531 370543119 0.000000e+00 4318.0
11 TraesCS7B01G186900 chr7A 97.196 2318 49 7 767 3079 370553762 370556068 0.000000e+00 3906.0
12 TraesCS7B01G186900 chr7A 94.067 927 39 4 3015 3939 370542881 370543793 0.000000e+00 1393.0
13 TraesCS7B01G186900 chr7A 91.154 260 10 1 3680 3939 370556409 370556655 1.500000e-89 340.0
14 TraesCS7B01G186900 chr7A 86.555 238 28 4 3016 3253 370542990 370543223 4.320000e-65 259.0
15 TraesCS7B01G186900 chr7A 89.051 137 9 6 3227 3357 370542767 370542903 9.680000e-37 165.0
16 TraesCS7B01G186900 chr7A 90.000 130 9 4 3016 3145 370543098 370543223 9.680000e-37 165.0
17 TraesCS7B01G186900 chr7A 94.118 102 6 0 3875 3976 370543815 370543916 5.820000e-34 156.0
18 TraesCS7B01G186900 chr7A 94.118 102 6 0 3875 3976 370556677 370556778 5.820000e-34 156.0
19 TraesCS7B01G186900 chr3B 92.937 538 28 4 164 691 749761507 749760970 0.000000e+00 774.0
20 TraesCS7B01G186900 chr3B 89.154 544 31 13 166 691 809087612 809087079 0.000000e+00 652.0
21 TraesCS7B01G186900 chr3B 92.929 99 7 0 1 99 749761612 749761514 1.260000e-30 145.0
22 TraesCS7B01G186900 chr3B 94.872 39 2 0 124 162 749761325 749761363 1.310000e-05 62.1
23 TraesCS7B01G186900 chr1D 92.778 540 27 5 164 691 120812883 120813422 0.000000e+00 771.0
24 TraesCS7B01G186900 chr1D 97.368 38 1 0 125 162 120813066 120813029 1.010000e-06 65.8
25 TraesCS7B01G186900 chr4D 92.565 538 24 5 164 691 417879249 417878718 0.000000e+00 758.0
26 TraesCS7B01G186900 chr4D 100.000 34 0 0 125 158 417879068 417879101 3.630000e-06 63.9
27 TraesCS7B01G186900 chr2A 91.590 547 27 7 164 691 214711669 214712215 0.000000e+00 737.0
28 TraesCS7B01G186900 chr2A 97.368 38 1 0 125 162 214711850 214711813 1.010000e-06 65.8
29 TraesCS7B01G186900 chr5A 90.859 547 31 11 164 691 220909429 220908883 0.000000e+00 715.0
30 TraesCS7B01G186900 chr5A 92.857 98 7 0 1 98 220909537 220909440 4.530000e-30 143.0
31 TraesCS7B01G186900 chr5A 97.368 38 1 0 125 162 220909248 220909285 1.010000e-06 65.8
32 TraesCS7B01G186900 chr1A 90.494 547 33 8 164 691 95964600 95965146 0.000000e+00 704.0
33 TraesCS7B01G186900 chr1A 92.857 98 7 0 1 98 95964492 95964589 4.530000e-30 143.0
34 TraesCS7B01G186900 chr1A 94.737 38 2 0 125 162 95964781 95964744 4.700000e-05 60.2
35 TraesCS7B01G186900 chrUn 94.649 299 9 4 767 1062 305618133 305618427 1.430000e-124 457.0
36 TraesCS7B01G186900 chrUn 94.649 299 9 4 767 1062 305622420 305622714 1.430000e-124 457.0
37 TraesCS7B01G186900 chrUn 83.721 129 11 9 254 380 336901647 336901527 3.560000e-21 113.0
38 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625761540 625761642 1.630000e-29 141.0
39 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625763171 625763273 1.630000e-29 141.0
40 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625764799 625764901 1.630000e-29 141.0
41 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625766434 625766536 1.630000e-29 141.0
42 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625768071 625768173 1.630000e-29 141.0
43 TraesCS7B01G186900 chr2D 91.262 103 9 0 1 103 625774624 625774726 1.630000e-29 141.0
44 TraesCS7B01G186900 chr6A 96.000 50 1 1 224 273 489173080 489173128 3.610000e-11 80.5
45 TraesCS7B01G186900 chr6A 96.774 31 1 0 1142 1172 88763861 88763891 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G186900 chr7B 312440380 312444729 4349 True 8034.000000 8034 100.0000 1 4350 1 chr7B.!!$R1 4349
1 TraesCS7B01G186900 chr7D 358473203 358476211 3008 False 2644.000000 5123 93.7090 767 3774 2 chr7D.!!$F2 3007
2 TraesCS7B01G186900 chr7D 340235745 340236770 1025 True 390.000000 464 93.4480 164 691 2 chr7D.!!$R1 527
3 TraesCS7B01G186900 chr7A 370553762 370556778 3016 False 1467.333333 3906 94.1560 767 3976 3 chr7A.!!$F2 3209
4 TraesCS7B01G186900 chr7A 370540531 370543916 3385 False 1076.000000 4318 91.7600 767 3976 6 chr7A.!!$F1 3209
5 TraesCS7B01G186900 chr3B 809087079 809087612 533 True 652.000000 652 89.1540 166 691 1 chr3B.!!$R1 525
6 TraesCS7B01G186900 chr3B 749760970 749761612 642 True 459.500000 774 92.9330 1 691 2 chr3B.!!$R2 690
7 TraesCS7B01G186900 chr1D 120812883 120813422 539 False 771.000000 771 92.7780 164 691 1 chr1D.!!$F1 527
8 TraesCS7B01G186900 chr4D 417878718 417879249 531 True 758.000000 758 92.5650 164 691 1 chr4D.!!$R1 527
9 TraesCS7B01G186900 chr2A 214711669 214712215 546 False 737.000000 737 91.5900 164 691 1 chr2A.!!$F1 527
10 TraesCS7B01G186900 chr5A 220908883 220909537 654 True 429.000000 715 91.8580 1 691 2 chr5A.!!$R1 690
11 TraesCS7B01G186900 chr1A 95964492 95965146 654 False 423.500000 704 91.6755 1 691 2 chr1A.!!$F1 690
12 TraesCS7B01G186900 chrUn 305618133 305622714 4581 False 457.000000 457 94.6490 767 1062 2 chrUn.!!$F1 295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 164 0.250793 TACACCATTAGCCACCACGG 59.749 55.000 0.0 0.0 38.11 4.94 F
692 1233 0.887247 CACAATCCACATGCCCGAAA 59.113 50.000 0.0 0.0 0.00 3.46 F
813 1358 1.135689 GCACTGGCTTCGTAAACATGG 60.136 52.381 0.0 0.0 36.96 3.66 F
1487 2162 1.261480 CTGTCCACACTCTAGCCTGT 58.739 55.000 0.0 0.0 0.00 4.00 F
2069 4473 1.418637 TCGGTTTCTACCTTTGGCTGT 59.581 47.619 0.0 0.0 42.66 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1171 1846 2.046217 GGCCGTCTTCCCCTTGTC 60.046 66.667 0.00 0.00 0.00 3.18 R
1637 2314 3.123804 CTCGAACTATGGTGCCACATAC 58.876 50.000 0.00 0.00 32.39 2.39 R
2069 4473 5.290493 AGTACACTGAAGAACCACAATGA 57.710 39.130 0.00 0.00 0.00 2.57 R
3010 6232 1.337703 TCAAAGTTGGTCACAGCATGC 59.662 47.619 10.51 10.51 42.53 4.06 R
4037 7442 0.180171 CGATGAACCACCATAGCCCA 59.820 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.343484 TACCATCATCGACGAGAGGT 57.657 50.000 12.21 12.21 33.35 3.85
144 148 8.779096 TTTAAAAGTCCCCCTTTATTTGTACA 57.221 30.769 0.00 0.00 42.62 2.90
145 149 6.659745 AAAAGTCCCCCTTTATTTGTACAC 57.340 37.500 0.00 0.00 42.62 2.90
146 150 4.311520 AGTCCCCCTTTATTTGTACACC 57.688 45.455 0.00 0.00 0.00 4.16
147 151 3.658705 AGTCCCCCTTTATTTGTACACCA 59.341 43.478 0.00 0.00 0.00 4.17
148 152 4.293901 AGTCCCCCTTTATTTGTACACCAT 59.706 41.667 0.00 0.00 0.00 3.55
149 153 5.020795 GTCCCCCTTTATTTGTACACCATT 58.979 41.667 0.00 0.00 0.00 3.16
150 154 6.011451 AGTCCCCCTTTATTTGTACACCATTA 60.011 38.462 0.00 0.00 0.00 1.90
151 155 6.320418 GTCCCCCTTTATTTGTACACCATTAG 59.680 42.308 0.00 0.00 0.00 1.73
152 156 5.068591 CCCCCTTTATTTGTACACCATTAGC 59.931 44.000 0.00 0.00 0.00 3.09
153 157 5.068591 CCCCTTTATTTGTACACCATTAGCC 59.931 44.000 0.00 0.00 0.00 3.93
154 158 5.654650 CCCTTTATTTGTACACCATTAGCCA 59.345 40.000 0.00 0.00 0.00 4.75
155 159 6.405397 CCCTTTATTTGTACACCATTAGCCAC 60.405 42.308 0.00 0.00 0.00 5.01
156 160 6.405397 CCTTTATTTGTACACCATTAGCCACC 60.405 42.308 0.00 0.00 0.00 4.61
157 161 3.510531 TTTGTACACCATTAGCCACCA 57.489 42.857 0.00 0.00 0.00 4.17
158 162 2.483014 TGTACACCATTAGCCACCAC 57.517 50.000 0.00 0.00 0.00 4.16
159 163 1.338294 TGTACACCATTAGCCACCACG 60.338 52.381 0.00 0.00 0.00 4.94
160 164 0.250793 TACACCATTAGCCACCACGG 59.749 55.000 0.00 0.00 38.11 4.94
161 165 1.298340 CACCATTAGCCACCACGGA 59.702 57.895 0.00 0.00 36.56 4.69
162 166 1.024579 CACCATTAGCCACCACGGAC 61.025 60.000 0.00 0.00 36.56 4.79
312 319 4.457603 CGTAAAATTGGTGTTGATCCCTGA 59.542 41.667 0.00 0.00 0.00 3.86
459 967 7.759489 AAATTCATAACACTGCAGTTCCTAA 57.241 32.000 18.94 7.56 33.07 2.69
542 1059 4.963318 CCTTCCAGGTTGCTATCATAGA 57.037 45.455 0.00 0.00 0.00 1.98
608 1125 4.698304 GGAGTTGTCAACCATTATCCGAAA 59.302 41.667 12.17 0.00 0.00 3.46
668 1209 3.935024 ACGAGGAGCGGCTCATAA 58.065 55.556 29.33 0.00 46.49 1.90
680 1221 3.550842 GCGGCTCATAATTTCCACAATCC 60.551 47.826 0.00 0.00 0.00 3.01
691 1232 0.964860 CCACAATCCACATGCCCGAA 60.965 55.000 0.00 0.00 0.00 4.30
692 1233 0.887247 CACAATCCACATGCCCGAAA 59.113 50.000 0.00 0.00 0.00 3.46
693 1234 1.271934 CACAATCCACATGCCCGAAAA 59.728 47.619 0.00 0.00 0.00 2.29
694 1235 1.545582 ACAATCCACATGCCCGAAAAG 59.454 47.619 0.00 0.00 0.00 2.27
695 1236 1.818060 CAATCCACATGCCCGAAAAGA 59.182 47.619 0.00 0.00 0.00 2.52
696 1237 2.214376 ATCCACATGCCCGAAAAGAA 57.786 45.000 0.00 0.00 0.00 2.52
697 1238 1.988293 TCCACATGCCCGAAAAGAAA 58.012 45.000 0.00 0.00 0.00 2.52
698 1239 2.311463 TCCACATGCCCGAAAAGAAAA 58.689 42.857 0.00 0.00 0.00 2.29
699 1240 2.695666 TCCACATGCCCGAAAAGAAAAA 59.304 40.909 0.00 0.00 0.00 1.94
700 1241 3.323403 TCCACATGCCCGAAAAGAAAAAT 59.677 39.130 0.00 0.00 0.00 1.82
701 1242 4.524714 TCCACATGCCCGAAAAGAAAAATA 59.475 37.500 0.00 0.00 0.00 1.40
702 1243 5.186797 TCCACATGCCCGAAAAGAAAAATAT 59.813 36.000 0.00 0.00 0.00 1.28
703 1244 5.874261 CCACATGCCCGAAAAGAAAAATATT 59.126 36.000 0.00 0.00 0.00 1.28
704 1245 6.183360 CCACATGCCCGAAAAGAAAAATATTG 60.183 38.462 0.00 0.00 0.00 1.90
705 1246 6.589523 CACATGCCCGAAAAGAAAAATATTGA 59.410 34.615 0.00 0.00 0.00 2.57
706 1247 7.278424 CACATGCCCGAAAAGAAAAATATTGAT 59.722 33.333 0.00 0.00 0.00 2.57
707 1248 7.823799 ACATGCCCGAAAAGAAAAATATTGATT 59.176 29.630 0.00 0.00 0.00 2.57
708 1249 9.311916 CATGCCCGAAAAGAAAAATATTGATTA 57.688 29.630 0.00 0.00 0.00 1.75
709 1250 9.883142 ATGCCCGAAAAGAAAAATATTGATTAA 57.117 25.926 0.00 0.00 0.00 1.40
710 1251 9.883142 TGCCCGAAAAGAAAAATATTGATTAAT 57.117 25.926 0.00 0.00 0.00 1.40
759 1300 3.693300 CGTTGTAACGTACGAGCATTT 57.307 42.857 24.41 7.83 46.63 2.32
760 1301 4.043761 CGTTGTAACGTACGAGCATTTT 57.956 40.909 24.41 7.04 46.63 1.82
761 1302 4.448005 CGTTGTAACGTACGAGCATTTTT 58.552 39.130 24.41 6.26 46.63 1.94
762 1303 4.313682 CGTTGTAACGTACGAGCATTTTTG 59.686 41.667 24.41 0.00 46.63 2.44
763 1304 3.801293 TGTAACGTACGAGCATTTTTGC 58.199 40.909 24.41 7.92 0.00 3.68
765 1306 4.685165 TGTAACGTACGAGCATTTTTGCTA 59.315 37.500 24.41 0.00 46.36 3.49
786 1327 6.645003 TGCTAATCTACTAAATGTGTATGCCG 59.355 38.462 0.00 0.00 0.00 5.69
787 1328 5.924475 AATCTACTAAATGTGTATGCCGC 57.076 39.130 0.00 0.00 0.00 6.53
813 1358 1.135689 GCACTGGCTTCGTAAACATGG 60.136 52.381 0.00 0.00 36.96 3.66
814 1359 2.422597 CACTGGCTTCGTAAACATGGA 58.577 47.619 0.00 0.00 0.00 3.41
816 1361 1.737793 CTGGCTTCGTAAACATGGACC 59.262 52.381 0.00 0.00 0.00 4.46
1230 1905 3.058160 GAGGCCATGCGCAAGTGT 61.058 61.111 17.11 0.00 40.31 3.55
1278 1953 2.741092 GTGACGAGGTGGGCAAGA 59.259 61.111 0.00 0.00 0.00 3.02
1329 2004 2.670934 CTGGCTGTCCCTGTGTGC 60.671 66.667 0.00 0.00 0.00 4.57
1487 2162 1.261480 CTGTCCACACTCTAGCCTGT 58.739 55.000 0.00 0.00 0.00 4.00
1844 2521 4.864247 GGATGATAAATTTTGTGCAAGCGT 59.136 37.500 0.00 0.00 0.00 5.07
2069 4473 1.418637 TCGGTTTCTACCTTTGGCTGT 59.581 47.619 0.00 0.00 42.66 4.40
2572 4976 3.689649 GGGTGTAACAAGGTGCTATTCTG 59.310 47.826 0.00 0.00 39.98 3.02
2577 4981 6.649557 GTGTAACAAGGTGCTATTCTGTACTT 59.350 38.462 0.00 0.00 36.32 2.24
2800 6022 3.643237 TGGTAGGATTGGTGAGAGTAGG 58.357 50.000 0.00 0.00 0.00 3.18
2920 6142 6.060028 TCACTGTGAGTTGAAACTTATTGC 57.940 37.500 6.36 0.00 39.88 3.56
2944 6166 6.324819 CGAATGAATAAGGAATTGTGCTTGT 58.675 36.000 0.00 0.00 35.94 3.16
3010 6232 0.518636 CAATTCAGCTCCGTGGTGTG 59.481 55.000 5.09 0.00 43.97 3.82
3166 6388 3.304391 GCAAACACTGCGAAGATGGTTTA 60.304 43.478 0.00 0.00 42.37 2.01
3184 6514 4.438336 GGTTTAAAGAAACTAGATGGCGCC 60.438 45.833 22.73 22.73 43.83 6.53
3426 6756 7.405292 TCTGATTGTCAATCTATCCACCTTTT 58.595 34.615 22.89 0.00 38.72 2.27
3429 6759 6.834168 TTGTCAATCTATCCACCTTTTTCC 57.166 37.500 0.00 0.00 0.00 3.13
3602 6933 9.679661 TGTACACTGATTACAAACCATTGATAT 57.320 29.630 0.00 0.00 38.94 1.63
3711 7042 4.214310 TGGTTTGTTCCACTGTCATCATT 58.786 39.130 0.00 0.00 31.96 2.57
3840 7171 3.620488 TGATGTTGCTCCCAGATTTACC 58.380 45.455 0.00 0.00 0.00 2.85
3945 7276 9.672673 AGATGCTACACATAGTTGTTAAGAATT 57.327 29.630 0.00 0.00 39.84 2.17
3946 7277 9.922305 GATGCTACACATAGTTGTTAAGAATTC 57.078 33.333 0.00 0.00 39.84 2.17
3991 7396 4.649088 TGACACTCTTCAGAGAACGAAA 57.351 40.909 10.93 0.00 44.74 3.46
3999 7404 4.444388 TCTTCAGAGAACGAAATTGACACG 59.556 41.667 0.00 0.00 0.00 4.49
4001 7406 2.157668 CAGAGAACGAAATTGACACGGG 59.842 50.000 0.00 0.00 0.00 5.28
4002 7407 2.140717 GAGAACGAAATTGACACGGGT 58.859 47.619 0.00 0.00 0.00 5.28
4003 7408 2.546789 GAGAACGAAATTGACACGGGTT 59.453 45.455 0.00 0.00 0.00 4.11
4004 7409 2.289547 AGAACGAAATTGACACGGGTTG 59.710 45.455 0.00 0.00 0.00 3.77
4005 7410 0.309612 ACGAAATTGACACGGGTTGC 59.690 50.000 0.00 0.00 0.00 4.17
4006 7411 0.309302 CGAAATTGACACGGGTTGCA 59.691 50.000 0.00 0.00 0.00 4.08
4007 7412 1.068610 CGAAATTGACACGGGTTGCAT 60.069 47.619 0.00 0.00 0.00 3.96
4008 7413 2.595386 GAAATTGACACGGGTTGCATC 58.405 47.619 0.00 0.00 0.00 3.91
4009 7414 0.521291 AATTGACACGGGTTGCATCG 59.479 50.000 0.00 0.00 0.00 3.84
4010 7415 1.305219 ATTGACACGGGTTGCATCGG 61.305 55.000 0.00 2.50 0.00 4.18
4011 7416 2.358247 GACACGGGTTGCATCGGT 60.358 61.111 0.00 3.05 0.00 4.69
4013 7418 1.356527 GACACGGGTTGCATCGGTAC 61.357 60.000 0.00 0.00 0.00 3.34
4014 7419 1.374885 CACGGGTTGCATCGGTACA 60.375 57.895 8.94 0.00 0.00 2.90
4015 7420 1.079405 ACGGGTTGCATCGGTACAG 60.079 57.895 8.94 0.00 0.00 2.74
4018 7423 0.249398 GGGTTGCATCGGTACAGACT 59.751 55.000 0.00 0.00 0.00 3.24
4019 7424 1.641577 GGTTGCATCGGTACAGACTC 58.358 55.000 0.00 0.00 0.00 3.36
4020 7425 1.204941 GGTTGCATCGGTACAGACTCT 59.795 52.381 0.00 0.00 0.00 3.24
4021 7426 2.426024 GGTTGCATCGGTACAGACTCTA 59.574 50.000 0.00 0.00 0.00 2.43
4022 7427 3.119245 GGTTGCATCGGTACAGACTCTAA 60.119 47.826 0.00 0.00 0.00 2.10
4023 7428 4.106197 GTTGCATCGGTACAGACTCTAAG 58.894 47.826 0.00 0.00 0.00 2.18
4024 7429 2.099263 TGCATCGGTACAGACTCTAAGC 59.901 50.000 0.00 0.00 0.00 3.09
4025 7430 2.359531 GCATCGGTACAGACTCTAAGCT 59.640 50.000 0.00 0.00 0.00 3.74
4026 7431 3.549221 GCATCGGTACAGACTCTAAGCTC 60.549 52.174 0.00 0.00 0.00 4.09
4027 7432 3.630892 TCGGTACAGACTCTAAGCTCT 57.369 47.619 0.00 0.00 0.00 4.09
4028 7433 3.533547 TCGGTACAGACTCTAAGCTCTC 58.466 50.000 0.00 0.00 0.00 3.20
4029 7434 3.055312 TCGGTACAGACTCTAAGCTCTCA 60.055 47.826 0.00 0.00 0.00 3.27
4030 7435 3.311322 CGGTACAGACTCTAAGCTCTCAG 59.689 52.174 0.00 0.00 0.00 3.35
4031 7436 4.519213 GGTACAGACTCTAAGCTCTCAGA 58.481 47.826 0.00 0.00 0.00 3.27
4032 7437 4.944930 GGTACAGACTCTAAGCTCTCAGAA 59.055 45.833 0.00 0.00 0.00 3.02
4033 7438 5.592688 GGTACAGACTCTAAGCTCTCAGAAT 59.407 44.000 0.00 0.00 0.00 2.40
4034 7439 6.096282 GGTACAGACTCTAAGCTCTCAGAATT 59.904 42.308 0.00 0.00 0.00 2.17
4035 7440 7.283580 GGTACAGACTCTAAGCTCTCAGAATTA 59.716 40.741 0.00 0.00 0.00 1.40
4036 7441 7.095695 ACAGACTCTAAGCTCTCAGAATTAC 57.904 40.000 0.00 0.00 0.00 1.89
4037 7442 6.889722 ACAGACTCTAAGCTCTCAGAATTACT 59.110 38.462 0.00 0.00 0.00 2.24
4038 7443 7.148086 ACAGACTCTAAGCTCTCAGAATTACTG 60.148 40.741 0.00 0.00 46.97 2.74
4041 7446 2.998316 AGCTCTCAGAATTACTGGGC 57.002 50.000 0.00 0.00 45.96 5.36
4042 7447 2.476199 AGCTCTCAGAATTACTGGGCT 58.524 47.619 0.00 0.00 45.96 5.19
4043 7448 3.647636 AGCTCTCAGAATTACTGGGCTA 58.352 45.455 0.00 0.00 45.96 3.93
4047 7452 4.298626 TCTCAGAATTACTGGGCTATGGT 58.701 43.478 0.00 0.00 45.96 3.55
4049 7454 3.136443 TCAGAATTACTGGGCTATGGTGG 59.864 47.826 0.00 0.00 45.76 4.61
4050 7455 3.117888 CAGAATTACTGGGCTATGGTGGT 60.118 47.826 0.00 0.00 42.39 4.16
4051 7456 3.527665 AGAATTACTGGGCTATGGTGGTT 59.472 43.478 0.00 0.00 0.00 3.67
4052 7457 3.577805 ATTACTGGGCTATGGTGGTTC 57.422 47.619 0.00 0.00 0.00 3.62
4053 7458 1.959710 TACTGGGCTATGGTGGTTCA 58.040 50.000 0.00 0.00 0.00 3.18
4054 7459 1.298953 ACTGGGCTATGGTGGTTCAT 58.701 50.000 0.00 0.00 0.00 2.57
4056 7461 0.180171 TGGGCTATGGTGGTTCATCG 59.820 55.000 0.00 0.00 0.00 3.84
4059 7464 1.541233 GGCTATGGTGGTTCATCGAGG 60.541 57.143 0.00 0.00 0.00 4.63
4061 7466 1.414181 CTATGGTGGTTCATCGAGGCT 59.586 52.381 0.00 0.00 0.00 4.58
4062 7467 0.620556 ATGGTGGTTCATCGAGGCTT 59.379 50.000 0.00 0.00 0.00 4.35
4063 7468 0.400213 TGGTGGTTCATCGAGGCTTT 59.600 50.000 0.00 0.00 0.00 3.51
4064 7469 0.804989 GGTGGTTCATCGAGGCTTTG 59.195 55.000 0.00 0.00 0.00 2.77
4065 7470 0.804989 GTGGTTCATCGAGGCTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
4066 7471 0.690192 TGGTTCATCGAGGCTTTGGA 59.310 50.000 0.00 0.00 0.00 3.53
4067 7472 1.281867 TGGTTCATCGAGGCTTTGGAT 59.718 47.619 0.00 0.00 0.00 3.41
4068 7473 1.672881 GGTTCATCGAGGCTTTGGATG 59.327 52.381 14.36 14.36 39.07 3.51
4069 7474 2.632377 GTTCATCGAGGCTTTGGATGA 58.368 47.619 17.46 17.46 43.39 2.92
4070 7475 2.315925 TCATCGAGGCTTTGGATGAC 57.684 50.000 17.46 0.00 41.03 3.06
4071 7476 0.933097 CATCGAGGCTTTGGATGACG 59.067 55.000 15.05 0.74 39.89 4.35
4072 7477 0.537188 ATCGAGGCTTTGGATGACGT 59.463 50.000 0.00 0.00 0.00 4.34
4073 7478 0.320374 TCGAGGCTTTGGATGACGTT 59.680 50.000 0.00 0.00 0.00 3.99
4074 7479 0.443869 CGAGGCTTTGGATGACGTTG 59.556 55.000 0.00 0.00 0.00 4.10
4075 7480 0.804989 GAGGCTTTGGATGACGTTGG 59.195 55.000 0.00 0.00 0.00 3.77
4076 7481 0.110486 AGGCTTTGGATGACGTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
4077 7482 0.240945 GGCTTTGGATGACGTTGGTG 59.759 55.000 0.00 0.00 0.00 4.17
4078 7483 0.240945 GCTTTGGATGACGTTGGTGG 59.759 55.000 0.00 0.00 0.00 4.61
4080 7485 1.175983 TTTGGATGACGTTGGTGGGC 61.176 55.000 0.00 0.00 0.00 5.36
4081 7486 2.750237 GGATGACGTTGGTGGGCC 60.750 66.667 0.00 0.00 0.00 5.80
4082 7487 2.750237 GATGACGTTGGTGGGCCC 60.750 66.667 17.59 17.59 0.00 5.80
4083 7488 3.561120 GATGACGTTGGTGGGCCCA 62.561 63.158 24.45 24.45 43.27 5.36
4084 7489 3.567579 ATGACGTTGGTGGGCCCAG 62.568 63.158 29.55 16.56 46.31 4.45
4085 7490 4.265056 GACGTTGGTGGGCCCAGT 62.265 66.667 29.55 20.34 46.31 4.00
4086 7491 3.785122 GACGTTGGTGGGCCCAGTT 62.785 63.158 29.55 5.44 46.31 3.16
4087 7492 3.294493 CGTTGGTGGGCCCAGTTG 61.294 66.667 29.55 10.11 46.31 3.16
4089 7494 1.151908 GTTGGTGGGCCCAGTTGTA 59.848 57.895 29.55 7.03 46.31 2.41
4090 7495 0.468400 GTTGGTGGGCCCAGTTGTAA 60.468 55.000 29.55 13.30 46.31 2.41
4092 7497 1.357272 TGGTGGGCCCAGTTGTAAGT 61.357 55.000 29.55 0.00 38.72 2.24
4093 7498 0.178973 GGTGGGCCCAGTTGTAAGTT 60.179 55.000 29.55 0.00 0.00 2.66
4094 7499 1.244816 GTGGGCCCAGTTGTAAGTTC 58.755 55.000 29.55 5.09 0.00 3.01
4095 7500 1.145571 TGGGCCCAGTTGTAAGTTCT 58.854 50.000 24.45 0.00 0.00 3.01
4096 7501 1.073284 TGGGCCCAGTTGTAAGTTCTC 59.927 52.381 24.45 0.00 0.00 2.87
4098 7503 1.001633 GGCCCAGTTGTAAGTTCTCGA 59.998 52.381 0.00 0.00 0.00 4.04
4099 7504 2.354805 GGCCCAGTTGTAAGTTCTCGAT 60.355 50.000 0.00 0.00 0.00 3.59
4100 7505 3.335579 GCCCAGTTGTAAGTTCTCGATT 58.664 45.455 0.00 0.00 0.00 3.34
4101 7506 3.125316 GCCCAGTTGTAAGTTCTCGATTG 59.875 47.826 0.00 0.00 0.00 2.67
4102 7507 3.684788 CCCAGTTGTAAGTTCTCGATTGG 59.315 47.826 0.00 4.03 0.00 3.16
4103 7508 3.125316 CCAGTTGTAAGTTCTCGATTGGC 59.875 47.826 0.00 0.00 0.00 4.52
4104 7509 3.745975 CAGTTGTAAGTTCTCGATTGGCA 59.254 43.478 0.00 0.00 0.00 4.92
4105 7510 4.393062 CAGTTGTAAGTTCTCGATTGGCAT 59.607 41.667 0.00 0.00 0.00 4.40
4106 7511 4.631813 AGTTGTAAGTTCTCGATTGGCATC 59.368 41.667 0.00 0.00 0.00 3.91
4118 7523 4.314440 GGCATCGATGGCCCGCTA 62.314 66.667 34.97 0.00 45.87 4.26
4119 7524 2.046892 GCATCGATGGCCCGCTAT 60.047 61.111 26.00 0.00 0.00 2.97
4120 7525 1.218047 GCATCGATGGCCCGCTATA 59.782 57.895 26.00 0.00 0.00 1.31
4122 7527 0.532573 CATCGATGGCCCGCTATAGT 59.467 55.000 17.96 0.00 0.00 2.12
4125 7530 1.215647 GATGGCCCGCTATAGTCGG 59.784 63.158 21.54 21.54 46.05 4.79
4127 7532 1.119574 ATGGCCCGCTATAGTCGGTT 61.120 55.000 24.42 10.86 45.09 4.44
4129 7534 1.737816 GCCCGCTATAGTCGGTTCA 59.262 57.895 24.42 0.00 45.09 3.18
4130 7535 0.317479 GCCCGCTATAGTCGGTTCAT 59.683 55.000 24.42 0.00 45.09 2.57
4131 7536 1.669211 GCCCGCTATAGTCGGTTCATC 60.669 57.143 24.42 11.15 45.09 2.92
4132 7537 1.401148 CCCGCTATAGTCGGTTCATCG 60.401 57.143 24.42 11.37 45.09 3.84
4133 7538 1.534163 CCGCTATAGTCGGTTCATCGA 59.466 52.381 20.69 0.00 41.85 3.59
4134 7539 2.412977 CCGCTATAGTCGGTTCATCGAG 60.413 54.545 20.69 0.70 41.85 4.04
4135 7540 2.412977 CGCTATAGTCGGTTCATCGAGG 60.413 54.545 0.84 0.00 40.01 4.63
4136 7541 2.668834 GCTATAGTCGGTTCATCGAGGC 60.669 54.545 0.84 0.00 40.01 4.70
4137 7542 1.693627 ATAGTCGGTTCATCGAGGCT 58.306 50.000 0.00 0.00 40.01 4.58
4138 7543 1.471119 TAGTCGGTTCATCGAGGCTT 58.529 50.000 0.00 0.00 40.01 4.35
4139 7544 0.608640 AGTCGGTTCATCGAGGCTTT 59.391 50.000 0.00 0.00 40.01 3.51
4140 7545 0.721718 GTCGGTTCATCGAGGCTTTG 59.278 55.000 0.00 0.00 40.01 2.77
4141 7546 0.391130 TCGGTTCATCGAGGCTTTGG 60.391 55.000 0.00 0.00 34.82 3.28
4142 7547 0.391130 CGGTTCATCGAGGCTTTGGA 60.391 55.000 0.00 0.00 0.00 3.53
4143 7548 1.743772 CGGTTCATCGAGGCTTTGGAT 60.744 52.381 0.00 0.00 0.00 3.41
4144 7549 1.672881 GGTTCATCGAGGCTTTGGATG 59.327 52.381 14.36 14.36 39.07 3.51
4145 7550 2.632377 GTTCATCGAGGCTTTGGATGA 58.368 47.619 17.46 17.46 43.39 2.92
4147 7552 2.632377 TCATCGAGGCTTTGGATGAAC 58.368 47.619 18.48 0.00 42.46 3.18
4148 7553 1.672881 CATCGAGGCTTTGGATGAACC 59.327 52.381 15.05 0.00 39.89 3.62
4149 7554 0.391130 TCGAGGCTTTGGATGAACCG 60.391 55.000 0.00 0.00 42.61 4.44
4150 7555 0.391130 CGAGGCTTTGGATGAACCGA 60.391 55.000 0.00 0.00 42.61 4.69
4151 7556 1.087501 GAGGCTTTGGATGAACCGAC 58.912 55.000 0.00 0.00 42.61 4.79
4152 7557 0.693049 AGGCTTTGGATGAACCGACT 59.307 50.000 0.00 0.00 42.61 4.18
4153 7558 1.906574 AGGCTTTGGATGAACCGACTA 59.093 47.619 0.00 0.00 42.61 2.59
4154 7559 2.505819 AGGCTTTGGATGAACCGACTAT 59.494 45.455 0.00 0.00 42.61 2.12
4155 7560 2.614057 GGCTTTGGATGAACCGACTATG 59.386 50.000 0.00 0.00 42.61 2.23
4156 7561 2.614057 GCTTTGGATGAACCGACTATGG 59.386 50.000 0.00 0.00 42.61 2.74
4157 7562 3.873910 CTTTGGATGAACCGACTATGGT 58.126 45.455 0.00 0.00 46.67 3.55
4158 7563 2.979814 TGGATGAACCGACTATGGTG 57.020 50.000 0.00 0.00 42.89 4.17
4159 7564 1.484653 TGGATGAACCGACTATGGTGG 59.515 52.381 0.00 0.00 42.89 4.61
4160 7565 1.485066 GGATGAACCGACTATGGTGGT 59.515 52.381 0.00 0.00 42.89 4.16
4165 7570 3.713826 AACCGACTATGGTGGTTCATT 57.286 42.857 9.28 0.00 42.11 2.57
4166 7571 2.985896 ACCGACTATGGTGGTTCATTG 58.014 47.619 0.00 0.00 41.85 2.82
4167 7572 2.569853 ACCGACTATGGTGGTTCATTGA 59.430 45.455 0.00 0.00 41.85 2.57
4168 7573 3.198068 CCGACTATGGTGGTTCATTGAG 58.802 50.000 0.00 0.00 0.00 3.02
4169 7574 3.198068 CGACTATGGTGGTTCATTGAGG 58.802 50.000 0.00 0.00 0.00 3.86
4170 7575 2.945668 GACTATGGTGGTTCATTGAGGC 59.054 50.000 0.00 0.00 0.00 4.70
4171 7576 2.578021 ACTATGGTGGTTCATTGAGGCT 59.422 45.455 0.00 0.00 0.00 4.58
4172 7577 2.610438 ATGGTGGTTCATTGAGGCTT 57.390 45.000 0.00 0.00 0.00 4.35
4173 7578 2.380064 TGGTGGTTCATTGAGGCTTT 57.620 45.000 0.00 0.00 0.00 3.51
4174 7579 1.962807 TGGTGGTTCATTGAGGCTTTG 59.037 47.619 0.00 0.00 0.00 2.77
4175 7580 1.273327 GGTGGTTCATTGAGGCTTTGG 59.727 52.381 0.00 0.00 0.00 3.28
4176 7581 2.238521 GTGGTTCATTGAGGCTTTGGA 58.761 47.619 0.00 0.00 0.00 3.53
4177 7582 2.827921 GTGGTTCATTGAGGCTTTGGAT 59.172 45.455 0.00 0.00 0.00 3.41
4178 7583 2.827322 TGGTTCATTGAGGCTTTGGATG 59.173 45.455 0.00 0.00 0.00 3.51
4179 7584 3.091545 GGTTCATTGAGGCTTTGGATGA 58.908 45.455 0.00 0.00 0.00 2.92
4180 7585 3.511146 GGTTCATTGAGGCTTTGGATGAA 59.489 43.478 9.97 9.97 35.15 2.57
4181 7586 4.488879 GTTCATTGAGGCTTTGGATGAAC 58.511 43.478 20.12 20.12 45.04 3.18
4182 7587 3.091545 TCATTGAGGCTTTGGATGAACC 58.908 45.455 0.00 0.00 39.54 3.62
4183 7588 1.533625 TTGAGGCTTTGGATGAACCG 58.466 50.000 0.00 0.00 42.61 4.44
4184 7589 0.322456 TGAGGCTTTGGATGAACCGG 60.322 55.000 0.00 0.00 42.61 5.28
4185 7590 1.657751 GAGGCTTTGGATGAACCGGC 61.658 60.000 0.00 0.00 42.61 6.13
4186 7591 1.678970 GGCTTTGGATGAACCGGCT 60.679 57.895 0.00 0.00 42.61 5.52
4187 7592 0.393808 GGCTTTGGATGAACCGGCTA 60.394 55.000 0.00 0.00 42.61 3.93
4188 7593 1.680338 GCTTTGGATGAACCGGCTAT 58.320 50.000 0.00 0.00 42.61 2.97
4189 7594 1.334869 GCTTTGGATGAACCGGCTATG 59.665 52.381 0.00 0.00 42.61 2.23
4190 7595 1.949525 CTTTGGATGAACCGGCTATGG 59.050 52.381 0.00 0.00 42.61 2.74
4191 7596 0.916086 TTGGATGAACCGGCTATGGT 59.084 50.000 0.00 0.00 46.67 3.55
4192 7597 0.180171 TGGATGAACCGGCTATGGTG 59.820 55.000 0.00 0.00 42.89 4.17
4193 7598 0.535102 GGATGAACCGGCTATGGTGG 60.535 60.000 0.00 0.00 42.89 4.61
4194 7599 0.180406 GATGAACCGGCTATGGTGGT 59.820 55.000 0.00 0.00 42.89 4.16
4197 7602 2.071502 AACCGGCTATGGTGGTTCA 58.928 52.632 0.00 0.00 42.11 3.18
4198 7603 0.623723 AACCGGCTATGGTGGTTCAT 59.376 50.000 0.00 0.00 42.11 2.57
4199 7604 0.180406 ACCGGCTATGGTGGTTCATC 59.820 55.000 0.00 0.00 41.85 2.92
4200 7605 0.880278 CCGGCTATGGTGGTTCATCG 60.880 60.000 0.00 0.00 0.00 3.84
4201 7606 0.104120 CGGCTATGGTGGTTCATCGA 59.896 55.000 0.00 0.00 0.00 3.59
4202 7607 1.869754 CGGCTATGGTGGTTCATCGAG 60.870 57.143 0.00 0.00 0.00 4.04
4203 7608 1.541233 GGCTATGGTGGTTCATCGAGG 60.541 57.143 0.00 0.00 0.00 4.63
4204 7609 1.871080 CTATGGTGGTTCATCGAGGC 58.129 55.000 0.00 0.00 0.00 4.70
4205 7610 1.414181 CTATGGTGGTTCATCGAGGCT 59.586 52.381 0.00 0.00 0.00 4.58
4206 7611 0.620556 ATGGTGGTTCATCGAGGCTT 59.379 50.000 0.00 0.00 0.00 4.35
4207 7612 0.400213 TGGTGGTTCATCGAGGCTTT 59.600 50.000 0.00 0.00 0.00 3.51
4208 7613 0.804989 GGTGGTTCATCGAGGCTTTG 59.195 55.000 0.00 0.00 0.00 2.77
4209 7614 0.804989 GTGGTTCATCGAGGCTTTGG 59.195 55.000 0.00 0.00 0.00 3.28
4210 7615 0.690192 TGGTTCATCGAGGCTTTGGA 59.310 50.000 0.00 0.00 0.00 3.53
4211 7616 1.281867 TGGTTCATCGAGGCTTTGGAT 59.718 47.619 0.00 0.00 0.00 3.41
4212 7617 1.672881 GGTTCATCGAGGCTTTGGATG 59.327 52.381 14.36 14.36 39.07 3.51
4213 7618 1.064654 GTTCATCGAGGCTTTGGATGC 59.935 52.381 15.24 3.87 37.93 3.91
4219 7624 3.830192 GGCTTTGGATGCCGCTGG 61.830 66.667 0.00 0.00 41.03 4.85
4220 7625 3.064324 GCTTTGGATGCCGCTGGT 61.064 61.111 0.00 0.00 0.00 4.00
4221 7626 2.639327 GCTTTGGATGCCGCTGGTT 61.639 57.895 0.00 0.00 0.00 3.67
4222 7627 1.508088 CTTTGGATGCCGCTGGTTC 59.492 57.895 0.00 0.00 0.00 3.62
4223 7628 1.228398 TTTGGATGCCGCTGGTTCA 60.228 52.632 0.00 0.00 0.00 3.18
4224 7629 0.611618 TTTGGATGCCGCTGGTTCAT 60.612 50.000 0.00 0.00 0.00 2.57
4225 7630 1.031571 TTGGATGCCGCTGGTTCATC 61.032 55.000 0.00 0.00 36.71 2.92
4226 7631 1.451927 GGATGCCGCTGGTTCATCA 60.452 57.895 13.07 0.00 38.58 3.07
4227 7632 1.031571 GGATGCCGCTGGTTCATCAA 61.032 55.000 13.07 0.00 38.58 2.57
4228 7633 0.379669 GATGCCGCTGGTTCATCAAG 59.620 55.000 0.00 0.00 37.23 3.02
4229 7634 1.033746 ATGCCGCTGGTTCATCAAGG 61.034 55.000 0.00 0.00 0.00 3.61
4230 7635 3.056313 GCCGCTGGTTCATCAAGGC 62.056 63.158 0.00 0.00 34.87 4.35
4231 7636 1.377725 CCGCTGGTTCATCAAGGCT 60.378 57.895 0.00 0.00 0.00 4.58
4232 7637 0.962356 CCGCTGGTTCATCAAGGCTT 60.962 55.000 0.00 0.00 0.00 4.35
4233 7638 0.883833 CGCTGGTTCATCAAGGCTTT 59.116 50.000 0.00 0.00 0.00 3.51
4234 7639 1.401931 CGCTGGTTCATCAAGGCTTTG 60.402 52.381 1.35 1.35 35.57 2.77
4235 7640 1.067354 GCTGGTTCATCAAGGCTTTGG 60.067 52.381 8.88 0.00 34.97 3.28
4236 7641 2.517959 CTGGTTCATCAAGGCTTTGGA 58.482 47.619 8.88 0.00 34.97 3.53
4237 7642 3.094572 CTGGTTCATCAAGGCTTTGGAT 58.905 45.455 8.88 0.00 34.97 3.41
4238 7643 2.827322 TGGTTCATCAAGGCTTTGGATG 59.173 45.455 17.20 17.20 34.97 3.51
4239 7644 3.091545 GGTTCATCAAGGCTTTGGATGA 58.908 45.455 20.35 20.35 34.97 2.92
4240 7645 3.119352 GGTTCATCAAGGCTTTGGATGAC 60.119 47.826 22.71 18.11 34.05 3.06
4241 7646 2.358957 TCATCAAGGCTTTGGATGACG 58.641 47.619 20.35 0.26 34.97 4.35
4242 7647 1.098050 ATCAAGGCTTTGGATGACGC 58.902 50.000 8.88 0.00 34.97 5.19
4243 7648 0.036732 TCAAGGCTTTGGATGACGCT 59.963 50.000 8.88 0.00 34.97 5.07
4244 7649 0.169672 CAAGGCTTTGGATGACGCTG 59.830 55.000 0.00 0.00 0.00 5.18
4245 7650 0.962356 AAGGCTTTGGATGACGCTGG 60.962 55.000 0.00 0.00 0.00 4.85
4246 7651 2.409870 GGCTTTGGATGACGCTGGG 61.410 63.158 0.00 0.00 0.00 4.45
4247 7652 3.056313 GCTTTGGATGACGCTGGGC 62.056 63.158 0.00 0.00 0.00 5.36
4248 7653 1.377725 CTTTGGATGACGCTGGGCT 60.378 57.895 0.00 0.00 0.00 5.19
4249 7654 1.372087 CTTTGGATGACGCTGGGCTC 61.372 60.000 0.00 0.00 0.00 4.70
4250 7655 1.841302 TTTGGATGACGCTGGGCTCT 61.841 55.000 0.00 0.00 0.00 4.09
4251 7656 2.107953 GGATGACGCTGGGCTCTC 59.892 66.667 0.00 0.00 0.00 3.20
4252 7657 2.107953 GATGACGCTGGGCTCTCC 59.892 66.667 0.00 0.00 0.00 3.71
4253 7658 2.685017 ATGACGCTGGGCTCTCCA 60.685 61.111 0.00 0.00 44.79 3.86
4254 7659 2.037620 GATGACGCTGGGCTCTCCAT 62.038 60.000 0.00 0.00 46.01 3.41
4255 7660 2.202987 GACGCTGGGCTCTCCATG 60.203 66.667 0.00 0.00 46.01 3.66
4256 7661 2.685017 ACGCTGGGCTCTCCATGA 60.685 61.111 0.00 0.00 46.01 3.07
4257 7662 2.244117 GACGCTGGGCTCTCCATGAA 62.244 60.000 0.00 0.00 46.01 2.57
4258 7663 1.523258 CGCTGGGCTCTCCATGAAG 60.523 63.158 0.00 0.00 46.01 3.02
4259 7664 1.153005 GCTGGGCTCTCCATGAAGG 60.153 63.158 0.00 0.00 46.01 3.46
4260 7665 1.530771 CTGGGCTCTCCATGAAGGG 59.469 63.158 0.00 0.00 46.01 3.95
4261 7666 1.992519 CTGGGCTCTCCATGAAGGGG 61.993 65.000 0.00 0.00 46.01 4.79
4262 7667 2.003548 GGGCTCTCCATGAAGGGGT 61.004 63.158 0.00 0.00 39.70 4.95
4263 7668 1.529309 GGCTCTCCATGAAGGGGTC 59.471 63.158 0.00 0.00 39.70 4.46
4264 7669 1.144936 GCTCTCCATGAAGGGGTCG 59.855 63.158 0.00 0.00 39.70 4.79
4265 7670 1.826024 CTCTCCATGAAGGGGTCGG 59.174 63.158 0.00 0.00 39.70 4.79
4266 7671 0.687757 CTCTCCATGAAGGGGTCGGA 60.688 60.000 0.00 0.00 39.70 4.55
4267 7672 0.687757 TCTCCATGAAGGGGTCGGAG 60.688 60.000 0.00 0.00 43.88 4.63
4268 7673 0.687757 CTCCATGAAGGGGTCGGAGA 60.688 60.000 0.00 0.00 45.08 3.71
4269 7674 0.687757 TCCATGAAGGGGTCGGAGAG 60.688 60.000 0.00 0.00 35.45 3.20
4270 7675 1.690219 CCATGAAGGGGTCGGAGAGG 61.690 65.000 0.00 0.00 36.95 3.69
4271 7676 2.066999 ATGAAGGGGTCGGAGAGGC 61.067 63.158 0.00 0.00 36.95 4.70
4272 7677 2.364448 GAAGGGGTCGGAGAGGCT 60.364 66.667 0.00 0.00 36.95 4.58
4273 7678 2.685380 AAGGGGTCGGAGAGGCTG 60.685 66.667 0.00 0.00 36.95 4.85
4274 7679 4.787280 AGGGGTCGGAGAGGCTGG 62.787 72.222 0.00 0.00 36.95 4.85
4278 7683 3.760035 GTCGGAGAGGCTGGCGAA 61.760 66.667 0.00 0.00 36.95 4.70
4279 7684 3.452786 TCGGAGAGGCTGGCGAAG 61.453 66.667 0.00 0.00 0.00 3.79
4323 7728 1.300697 GAACGACGGCAACAGGAGT 60.301 57.895 0.00 0.00 0.00 3.85
4336 7741 1.150135 ACAGGAGTTGAGGAAGGAGGA 59.850 52.381 0.00 0.00 0.00 3.71
4337 7742 1.552792 CAGGAGTTGAGGAAGGAGGAC 59.447 57.143 0.00 0.00 0.00 3.85
4340 7745 2.104170 GAGTTGAGGAAGGAGGACGAT 58.896 52.381 0.00 0.00 0.00 3.73
4342 7747 1.134670 GTTGAGGAAGGAGGACGATGG 60.135 57.143 0.00 0.00 0.00 3.51
4343 7748 1.330655 TGAGGAAGGAGGACGATGGC 61.331 60.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.507710 TGGCACTTTTAATGTTTGCAACA 58.492 34.783 0.00 0.88 46.94 3.33
124 128 4.106663 TGGTGTACAAATAAAGGGGGACTT 59.893 41.667 0.00 0.00 42.52 3.01
125 129 3.658705 TGGTGTACAAATAAAGGGGGACT 59.341 43.478 0.00 0.00 0.00 3.85
126 130 4.036941 TGGTGTACAAATAAAGGGGGAC 57.963 45.455 0.00 0.00 0.00 4.46
127 131 4.957606 ATGGTGTACAAATAAAGGGGGA 57.042 40.909 0.00 0.00 0.00 4.81
128 132 5.068591 GCTAATGGTGTACAAATAAAGGGGG 59.931 44.000 0.00 0.00 0.00 5.40
129 133 5.068591 GGCTAATGGTGTACAAATAAAGGGG 59.931 44.000 0.00 0.00 0.00 4.79
130 134 5.654650 TGGCTAATGGTGTACAAATAAAGGG 59.345 40.000 0.00 0.00 0.00 3.95
131 135 6.405397 GGTGGCTAATGGTGTACAAATAAAGG 60.405 42.308 0.00 0.00 0.00 3.11
132 136 6.151985 TGGTGGCTAATGGTGTACAAATAAAG 59.848 38.462 0.00 0.00 0.00 1.85
133 137 6.010850 TGGTGGCTAATGGTGTACAAATAAA 58.989 36.000 0.00 0.00 0.00 1.40
134 138 5.416326 GTGGTGGCTAATGGTGTACAAATAA 59.584 40.000 0.00 0.00 0.00 1.40
135 139 4.944930 GTGGTGGCTAATGGTGTACAAATA 59.055 41.667 0.00 0.00 0.00 1.40
136 140 3.761752 GTGGTGGCTAATGGTGTACAAAT 59.238 43.478 0.00 0.00 0.00 2.32
137 141 3.150767 GTGGTGGCTAATGGTGTACAAA 58.849 45.455 0.00 0.00 0.00 2.83
138 142 2.785562 GTGGTGGCTAATGGTGTACAA 58.214 47.619 0.00 0.00 0.00 2.41
139 143 1.338294 CGTGGTGGCTAATGGTGTACA 60.338 52.381 0.00 0.00 0.00 2.90
140 144 1.365699 CGTGGTGGCTAATGGTGTAC 58.634 55.000 0.00 0.00 0.00 2.90
141 145 0.250793 CCGTGGTGGCTAATGGTGTA 59.749 55.000 0.00 0.00 0.00 2.90
142 146 1.002624 CCGTGGTGGCTAATGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
143 147 1.024579 GTCCGTGGTGGCTAATGGTG 61.025 60.000 0.00 0.00 37.80 4.17
144 148 1.298667 GTCCGTGGTGGCTAATGGT 59.701 57.895 0.00 0.00 37.80 3.55
145 149 1.813753 CGTCCGTGGTGGCTAATGG 60.814 63.158 0.00 0.00 37.80 3.16
146 150 0.179084 ATCGTCCGTGGTGGCTAATG 60.179 55.000 0.00 0.00 37.80 1.90
147 151 1.405872 TATCGTCCGTGGTGGCTAAT 58.594 50.000 0.00 0.00 37.80 1.73
148 152 1.067974 CATATCGTCCGTGGTGGCTAA 59.932 52.381 0.00 0.00 37.80 3.09
149 153 0.671796 CATATCGTCCGTGGTGGCTA 59.328 55.000 0.00 0.00 37.80 3.93
150 154 1.441729 CATATCGTCCGTGGTGGCT 59.558 57.895 0.00 0.00 37.80 4.75
151 155 2.244651 GCATATCGTCCGTGGTGGC 61.245 63.158 0.00 0.00 37.80 5.01
152 156 0.249868 ATGCATATCGTCCGTGGTGG 60.250 55.000 0.00 0.00 40.09 4.61
153 157 1.581934 AATGCATATCGTCCGTGGTG 58.418 50.000 0.00 0.00 0.00 4.17
154 158 2.325583 AAATGCATATCGTCCGTGGT 57.674 45.000 0.00 0.00 0.00 4.16
155 159 3.691049 AAAAATGCATATCGTCCGTGG 57.309 42.857 0.00 0.00 0.00 4.94
216 221 2.403259 CATTGCAACCGGGAAGAAAAC 58.597 47.619 6.32 0.00 0.00 2.43
312 319 6.323739 CCCTTTATTTGTACACCATTAGCCAT 59.676 38.462 0.00 0.00 0.00 4.40
542 1059 2.882761 CCATGATGAGATCGCCACAATT 59.117 45.455 0.00 0.00 0.00 2.32
594 1111 6.184789 ACACCTATGTTTTCGGATAATGGTT 58.815 36.000 0.00 0.00 34.46 3.67
608 1125 9.135189 TCGGTTTACAGTATATACACCTATGTT 57.865 33.333 15.18 0.00 40.48 2.71
666 1207 3.450457 GGGCATGTGGATTGTGGAAATTA 59.550 43.478 0.00 0.00 0.00 1.40
668 1209 1.832998 GGGCATGTGGATTGTGGAAAT 59.167 47.619 0.00 0.00 0.00 2.17
680 1221 6.589523 TCAATATTTTTCTTTTCGGGCATGTG 59.410 34.615 0.00 0.00 0.00 3.21
740 1281 4.086105 GCAAAAATGCTCGTACGTTACAAC 59.914 41.667 16.05 0.49 0.00 3.32
741 1282 4.024725 AGCAAAAATGCTCGTACGTTACAA 60.025 37.500 16.05 0.00 42.12 2.41
742 1283 3.495377 AGCAAAAATGCTCGTACGTTACA 59.505 39.130 16.05 12.14 42.12 2.41
743 1284 4.061570 AGCAAAAATGCTCGTACGTTAC 57.938 40.909 16.05 6.57 42.12 2.50
744 1285 5.842619 TTAGCAAAAATGCTCGTACGTTA 57.157 34.783 16.05 3.25 45.00 3.18
745 1286 4.735662 TTAGCAAAAATGCTCGTACGTT 57.264 36.364 16.05 0.00 45.00 3.99
746 1287 4.630069 AGATTAGCAAAAATGCTCGTACGT 59.370 37.500 16.05 0.00 45.00 3.57
747 1288 5.143916 AGATTAGCAAAAATGCTCGTACG 57.856 39.130 9.53 9.53 45.00 3.67
748 1289 7.235430 AGTAGATTAGCAAAAATGCTCGTAC 57.765 36.000 6.59 5.42 45.00 3.67
749 1290 8.936070 TTAGTAGATTAGCAAAAATGCTCGTA 57.064 30.769 6.59 0.00 45.00 3.43
750 1291 7.843490 TTAGTAGATTAGCAAAAATGCTCGT 57.157 32.000 6.59 0.00 45.00 4.18
751 1292 9.162793 CATTTAGTAGATTAGCAAAAATGCTCG 57.837 33.333 6.59 0.00 45.00 5.03
754 1295 9.573133 ACACATTTAGTAGATTAGCAAAAATGC 57.427 29.630 0.00 0.00 36.69 3.56
759 1300 8.836413 GGCATACACATTTAGTAGATTAGCAAA 58.164 33.333 0.00 0.00 0.00 3.68
760 1301 7.170828 CGGCATACACATTTAGTAGATTAGCAA 59.829 37.037 0.00 0.00 0.00 3.91
761 1302 6.645003 CGGCATACACATTTAGTAGATTAGCA 59.355 38.462 0.00 0.00 0.00 3.49
762 1303 6.401153 GCGGCATACACATTTAGTAGATTAGC 60.401 42.308 0.00 0.00 0.00 3.09
763 1304 6.183359 CGCGGCATACACATTTAGTAGATTAG 60.183 42.308 0.00 0.00 0.00 1.73
764 1305 5.631929 CGCGGCATACACATTTAGTAGATTA 59.368 40.000 0.00 0.00 0.00 1.75
765 1306 4.447724 CGCGGCATACACATTTAGTAGATT 59.552 41.667 0.00 0.00 0.00 2.40
787 1328 4.724697 CGAAGCCAGTGCGTTGCG 62.725 66.667 0.00 0.00 44.33 4.85
813 1358 0.598680 CATCCGGCTTCTCATCGGTC 60.599 60.000 0.00 0.00 43.75 4.79
814 1359 1.043116 TCATCCGGCTTCTCATCGGT 61.043 55.000 0.00 0.00 43.75 4.69
816 1361 2.160822 AATCATCCGGCTTCTCATCG 57.839 50.000 0.00 0.00 0.00 3.84
927 1478 2.584236 CGGAGAAACCCTAGCTAGCTA 58.416 52.381 22.85 22.85 34.64 3.32
928 1479 1.404843 CGGAGAAACCCTAGCTAGCT 58.595 55.000 23.12 23.12 34.64 3.32
929 1480 0.249531 GCGGAGAAACCCTAGCTAGC 60.250 60.000 15.74 6.62 34.64 3.42
930 1481 0.389757 GGCGGAGAAACCCTAGCTAG 59.610 60.000 14.20 14.20 34.64 3.42
1166 1841 2.602267 TCTTCCCCTTGTCGGCGA 60.602 61.111 4.99 4.99 0.00 5.54
1168 1843 2.434359 CGTCTTCCCCTTGTCGGC 60.434 66.667 0.00 0.00 0.00 5.54
1170 1845 2.434359 GCCGTCTTCCCCTTGTCG 60.434 66.667 0.00 0.00 0.00 4.35
1171 1846 2.046217 GGCCGTCTTCCCCTTGTC 60.046 66.667 0.00 0.00 0.00 3.18
1212 1887 2.749044 CACTTGCGCATGGCCTCT 60.749 61.111 24.99 3.04 42.61 3.69
1249 1924 4.710695 CGTCACGCCGTGGTAGCA 62.711 66.667 18.32 0.00 33.87 3.49
1278 1953 2.565834 ACAGTAACAACGTCCTGCCTAT 59.434 45.455 0.00 0.00 0.00 2.57
1329 2004 4.536364 ACACAAACAATCGAGTCAACAG 57.464 40.909 0.00 0.00 0.00 3.16
1487 2162 5.481122 TGGGCTCTGAAAATCATTGAATGAA 59.519 36.000 12.36 0.00 43.50 2.57
1637 2314 3.123804 CTCGAACTATGGTGCCACATAC 58.876 50.000 0.00 0.00 32.39 2.39
1976 4379 8.796475 AGATACTAAGTGCACAATTGAATGTTT 58.204 29.630 21.04 2.64 0.00 2.83
1983 4386 7.332926 AGAGTGAAGATACTAAGTGCACAATTG 59.667 37.037 21.04 10.81 0.00 2.32
2069 4473 5.290493 AGTACACTGAAGAACCACAATGA 57.710 39.130 0.00 0.00 0.00 2.57
2290 4694 6.183360 TGCCAGTTCCTCAAAATACACAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
2800 6022 6.098409 TCCCAAGATAGATGTCTTTAGTGTCC 59.902 42.308 0.00 0.00 36.33 4.02
2920 6142 6.324819 ACAAGCACAATTCCTTATTCATTCG 58.675 36.000 0.00 0.00 0.00 3.34
2944 6166 2.951642 CTCCACTTCAGTTTCTGCCAAA 59.048 45.455 0.00 0.00 0.00 3.28
3010 6232 1.337703 TCAAAGTTGGTCACAGCATGC 59.662 47.619 10.51 10.51 42.53 4.06
3166 6388 2.633488 GAGGCGCCATCTAGTTTCTTT 58.367 47.619 31.54 1.45 0.00 2.52
3206 6536 2.107204 ACTTGGTGACTTCTGATTGGCT 59.893 45.455 0.00 0.00 0.00 4.75
3397 6727 7.072202 AGGTGGATAGATTGACAATCAGAGAAT 59.928 37.037 26.05 13.02 40.42 2.40
3407 6737 6.139679 AGGAAAAAGGTGGATAGATTGACA 57.860 37.500 0.00 0.00 0.00 3.58
3416 6746 6.554605 TCAATCAAGAAAGGAAAAAGGTGGAT 59.445 34.615 0.00 0.00 0.00 3.41
3426 6756 7.336176 CACTCTCATCATCAATCAAGAAAGGAA 59.664 37.037 0.00 0.00 0.00 3.36
3429 6759 7.549842 AGACACTCTCATCATCAATCAAGAAAG 59.450 37.037 0.00 0.00 0.00 2.62
3620 6951 8.924511 AATAGAAGAATGAACTTCCTTTGTGA 57.075 30.769 0.00 0.00 44.90 3.58
3711 7042 7.754851 TGCACTATATCGGAGTATTCTGTTA 57.245 36.000 0.00 0.00 0.00 2.41
3777 7108 4.602340 ACCACCGTCAGGATGTAATATC 57.398 45.455 0.00 0.00 41.02 1.63
3778 7109 4.654262 AGAACCACCGTCAGGATGTAATAT 59.346 41.667 0.00 0.00 41.02 1.28
3779 7110 4.028131 AGAACCACCGTCAGGATGTAATA 58.972 43.478 0.00 0.00 41.02 0.98
3780 7111 2.838202 AGAACCACCGTCAGGATGTAAT 59.162 45.455 0.00 0.00 41.02 1.89
3781 7112 2.028476 CAGAACCACCGTCAGGATGTAA 60.028 50.000 0.00 0.00 41.02 2.41
3782 7113 1.548719 CAGAACCACCGTCAGGATGTA 59.451 52.381 0.00 0.00 41.02 2.29
3783 7114 0.321671 CAGAACCACCGTCAGGATGT 59.678 55.000 0.00 0.00 41.02 3.06
3784 7115 0.608130 TCAGAACCACCGTCAGGATG 59.392 55.000 0.00 0.00 41.02 3.51
3785 7116 1.348064 TTCAGAACCACCGTCAGGAT 58.652 50.000 0.00 0.00 41.02 3.24
3786 7117 1.348064 ATTCAGAACCACCGTCAGGA 58.652 50.000 0.00 0.00 41.02 3.86
3787 7118 3.000727 GTTATTCAGAACCACCGTCAGG 58.999 50.000 0.00 0.00 45.13 3.86
3788 7119 3.659786 TGTTATTCAGAACCACCGTCAG 58.340 45.455 0.00 0.00 0.00 3.51
3789 7120 3.556213 CCTGTTATTCAGAACCACCGTCA 60.556 47.826 0.00 0.00 46.27 4.35
3856 7187 3.526931 TTCTAGGACAGATTCTTGGCG 57.473 47.619 0.00 0.00 31.77 5.69
3857 7188 4.579869 TGTTTCTAGGACAGATTCTTGGC 58.420 43.478 0.00 0.00 31.77 4.52
3858 7189 7.391554 TGAATTGTTTCTAGGACAGATTCTTGG 59.608 37.037 19.78 0.00 32.31 3.61
3939 7270 8.436200 CGTTCTCTGAAGATTAAACGAATTCTT 58.564 33.333 3.52 0.00 0.00 2.52
3940 7271 7.813148 TCGTTCTCTGAAGATTAAACGAATTCT 59.187 33.333 16.49 0.00 0.00 2.40
3941 7272 7.950236 TCGTTCTCTGAAGATTAAACGAATTC 58.050 34.615 16.49 0.00 0.00 2.17
3942 7273 7.884816 TCGTTCTCTGAAGATTAAACGAATT 57.115 32.000 16.49 0.00 0.00 2.17
3943 7274 7.599245 ACTTCGTTCTCTGAAGATTAAACGAAT 59.401 33.333 23.51 16.56 44.42 3.34
3944 7275 6.921857 ACTTCGTTCTCTGAAGATTAAACGAA 59.078 34.615 22.70 22.70 44.42 3.85
3945 7276 6.444633 ACTTCGTTCTCTGAAGATTAAACGA 58.555 36.000 15.56 15.56 44.42 3.85
3946 7277 6.692232 ACTTCGTTCTCTGAAGATTAAACG 57.308 37.500 9.50 12.73 44.42 3.60
3958 7289 4.098044 TGAAGAGTGTCAACTTCGTTCTCT 59.902 41.667 13.00 0.00 43.46 3.10
3991 7396 1.305219 CCGATGCAACCCGTGTCAAT 61.305 55.000 0.00 0.00 0.00 2.57
3999 7404 0.249398 AGTCTGTACCGATGCAACCC 59.751 55.000 0.00 0.00 0.00 4.11
4001 7406 2.656560 AGAGTCTGTACCGATGCAAC 57.343 50.000 0.00 0.00 0.00 4.17
4002 7407 3.428999 GCTTAGAGTCTGTACCGATGCAA 60.429 47.826 1.86 0.00 0.00 4.08
4003 7408 2.099263 GCTTAGAGTCTGTACCGATGCA 59.901 50.000 1.86 0.00 0.00 3.96
4004 7409 2.359531 AGCTTAGAGTCTGTACCGATGC 59.640 50.000 1.86 0.00 0.00 3.91
4005 7410 3.880490 AGAGCTTAGAGTCTGTACCGATG 59.120 47.826 1.86 0.00 0.00 3.84
4006 7411 4.131596 GAGAGCTTAGAGTCTGTACCGAT 58.868 47.826 1.86 0.00 0.00 4.18
4007 7412 3.055312 TGAGAGCTTAGAGTCTGTACCGA 60.055 47.826 1.86 0.00 0.00 4.69
4008 7413 3.271729 TGAGAGCTTAGAGTCTGTACCG 58.728 50.000 1.86 0.00 0.00 4.02
4009 7414 4.519213 TCTGAGAGCTTAGAGTCTGTACC 58.481 47.826 1.86 0.00 0.00 3.34
4010 7415 6.693315 ATTCTGAGAGCTTAGAGTCTGTAC 57.307 41.667 1.86 0.00 0.00 2.90
4011 7416 8.050325 AGTAATTCTGAGAGCTTAGAGTCTGTA 58.950 37.037 1.86 0.00 0.00 2.74
4013 7418 7.195646 CAGTAATTCTGAGAGCTTAGAGTCTG 58.804 42.308 1.86 0.00 46.27 3.51
4014 7419 6.321181 CCAGTAATTCTGAGAGCTTAGAGTCT 59.679 42.308 0.00 0.00 46.27 3.24
4015 7420 6.460953 CCCAGTAATTCTGAGAGCTTAGAGTC 60.461 46.154 0.00 0.00 46.27 3.36
4018 7423 4.100189 GCCCAGTAATTCTGAGAGCTTAGA 59.900 45.833 0.00 0.00 46.27 2.10
4019 7424 4.100808 AGCCCAGTAATTCTGAGAGCTTAG 59.899 45.833 0.00 0.00 46.27 2.18
4020 7425 4.033709 AGCCCAGTAATTCTGAGAGCTTA 58.966 43.478 0.00 0.00 46.27 3.09
4021 7426 2.843113 AGCCCAGTAATTCTGAGAGCTT 59.157 45.455 0.00 0.00 46.27 3.74
4022 7427 2.476199 AGCCCAGTAATTCTGAGAGCT 58.524 47.619 0.00 0.00 46.27 4.09
4023 7428 2.998316 AGCCCAGTAATTCTGAGAGC 57.002 50.000 6.50 6.50 46.27 4.09
4024 7429 4.346418 ACCATAGCCCAGTAATTCTGAGAG 59.654 45.833 6.50 0.00 46.27 3.20
4025 7430 4.101585 CACCATAGCCCAGTAATTCTGAGA 59.898 45.833 6.50 0.00 46.27 3.27
4026 7431 4.384056 CACCATAGCCCAGTAATTCTGAG 58.616 47.826 6.50 0.00 46.27 3.35
4027 7432 3.136443 CCACCATAGCCCAGTAATTCTGA 59.864 47.826 6.50 0.00 46.27 3.27
4028 7433 3.117888 ACCACCATAGCCCAGTAATTCTG 60.118 47.826 0.00 0.00 43.27 3.02
4029 7434 3.123273 ACCACCATAGCCCAGTAATTCT 58.877 45.455 0.00 0.00 0.00 2.40
4030 7435 3.577805 ACCACCATAGCCCAGTAATTC 57.422 47.619 0.00 0.00 0.00 2.17
4031 7436 3.268334 TGAACCACCATAGCCCAGTAATT 59.732 43.478 0.00 0.00 0.00 1.40
4032 7437 2.849943 TGAACCACCATAGCCCAGTAAT 59.150 45.455 0.00 0.00 0.00 1.89
4033 7438 2.270858 TGAACCACCATAGCCCAGTAA 58.729 47.619 0.00 0.00 0.00 2.24
4034 7439 1.959710 TGAACCACCATAGCCCAGTA 58.040 50.000 0.00 0.00 0.00 2.74
4035 7440 1.212935 GATGAACCACCATAGCCCAGT 59.787 52.381 0.00 0.00 0.00 4.00
4036 7441 1.811558 CGATGAACCACCATAGCCCAG 60.812 57.143 0.00 0.00 0.00 4.45
4037 7442 0.180171 CGATGAACCACCATAGCCCA 59.820 55.000 0.00 0.00 0.00 5.36
4038 7443 0.468226 TCGATGAACCACCATAGCCC 59.532 55.000 0.00 0.00 0.00 5.19
4041 7446 1.414181 AGCCTCGATGAACCACCATAG 59.586 52.381 0.00 0.00 0.00 2.23
4042 7447 1.496060 AGCCTCGATGAACCACCATA 58.504 50.000 0.00 0.00 0.00 2.74
4043 7448 0.620556 AAGCCTCGATGAACCACCAT 59.379 50.000 0.00 0.00 0.00 3.55
4047 7452 0.690192 TCCAAAGCCTCGATGAACCA 59.310 50.000 0.00 0.00 0.00 3.67
4049 7454 2.352960 GTCATCCAAAGCCTCGATGAAC 59.647 50.000 0.81 0.00 42.90 3.18
4050 7455 2.632377 GTCATCCAAAGCCTCGATGAA 58.368 47.619 0.81 0.00 42.90 2.57
4051 7456 1.471501 CGTCATCCAAAGCCTCGATGA 60.472 52.381 0.00 0.00 39.97 2.92
4052 7457 0.933097 CGTCATCCAAAGCCTCGATG 59.067 55.000 0.00 0.00 35.71 3.84
4053 7458 0.537188 ACGTCATCCAAAGCCTCGAT 59.463 50.000 0.00 0.00 0.00 3.59
4054 7459 0.320374 AACGTCATCCAAAGCCTCGA 59.680 50.000 0.00 0.00 0.00 4.04
4056 7461 0.804989 CCAACGTCATCCAAAGCCTC 59.195 55.000 0.00 0.00 0.00 4.70
4059 7464 0.240945 CCACCAACGTCATCCAAAGC 59.759 55.000 0.00 0.00 0.00 3.51
4061 7466 1.175983 GCCCACCAACGTCATCCAAA 61.176 55.000 0.00 0.00 0.00 3.28
4062 7467 1.602323 GCCCACCAACGTCATCCAA 60.602 57.895 0.00 0.00 0.00 3.53
4063 7468 2.033448 GCCCACCAACGTCATCCA 59.967 61.111 0.00 0.00 0.00 3.41
4064 7469 2.750237 GGCCCACCAACGTCATCC 60.750 66.667 0.00 0.00 35.26 3.51
4065 7470 2.750237 GGGCCCACCAACGTCATC 60.750 66.667 19.95 0.00 39.85 2.92
4074 7479 0.178973 AACTTACAACTGGGCCCACC 60.179 55.000 24.45 0.00 40.81 4.61
4075 7480 1.202891 AGAACTTACAACTGGGCCCAC 60.203 52.381 24.45 7.04 0.00 4.61
4076 7481 1.073284 GAGAACTTACAACTGGGCCCA 59.927 52.381 26.67 26.67 0.00 5.36
4077 7482 1.822506 GAGAACTTACAACTGGGCCC 58.177 55.000 17.59 17.59 0.00 5.80
4078 7483 1.001633 TCGAGAACTTACAACTGGGCC 59.998 52.381 0.00 0.00 0.00 5.80
4080 7485 3.684788 CCAATCGAGAACTTACAACTGGG 59.315 47.826 0.00 0.00 0.00 4.45
4081 7486 3.125316 GCCAATCGAGAACTTACAACTGG 59.875 47.826 0.00 0.00 0.00 4.00
4082 7487 3.745975 TGCCAATCGAGAACTTACAACTG 59.254 43.478 0.00 0.00 0.00 3.16
4083 7488 4.002906 TGCCAATCGAGAACTTACAACT 57.997 40.909 0.00 0.00 0.00 3.16
4084 7489 4.898370 GATGCCAATCGAGAACTTACAAC 58.102 43.478 0.00 0.00 0.00 3.32
4102 7507 0.807667 CTATAGCGGGCCATCGATGC 60.808 60.000 20.25 14.58 0.00 3.91
4103 7508 0.532573 ACTATAGCGGGCCATCGATG 59.467 55.000 18.76 18.76 0.00 3.84
4104 7509 0.818296 GACTATAGCGGGCCATCGAT 59.182 55.000 4.39 0.00 0.00 3.59
4105 7510 1.583495 CGACTATAGCGGGCCATCGA 61.583 60.000 4.39 0.00 0.00 3.59
4106 7511 1.154016 CGACTATAGCGGGCCATCG 60.154 63.158 4.39 0.00 0.00 3.84
4107 7512 1.215647 CCGACTATAGCGGGCCATC 59.784 63.158 21.03 0.00 44.87 3.51
4108 7513 3.377656 CCGACTATAGCGGGCCAT 58.622 61.111 21.03 0.00 44.87 4.40
4114 7519 2.412977 CCTCGATGAACCGACTATAGCG 60.413 54.545 0.00 4.70 34.56 4.26
4117 7522 2.860009 AGCCTCGATGAACCGACTATA 58.140 47.619 0.00 0.00 34.56 1.31
4118 7523 1.693627 AGCCTCGATGAACCGACTAT 58.306 50.000 0.00 0.00 34.56 2.12
4119 7524 1.471119 AAGCCTCGATGAACCGACTA 58.529 50.000 0.00 0.00 34.56 2.59
4120 7525 0.608640 AAAGCCTCGATGAACCGACT 59.391 50.000 0.00 0.00 34.56 4.18
4122 7527 0.391130 CCAAAGCCTCGATGAACCGA 60.391 55.000 0.00 0.00 37.03 4.69
4125 7530 2.632377 TCATCCAAAGCCTCGATGAAC 58.368 47.619 0.00 0.00 39.46 3.18
4127 7532 2.632377 GTTCATCCAAAGCCTCGATGA 58.368 47.619 0.00 0.00 40.39 2.92
4129 7534 1.743772 CGGTTCATCCAAAGCCTCGAT 60.744 52.381 0.00 0.00 35.57 3.59
4130 7535 0.391130 CGGTTCATCCAAAGCCTCGA 60.391 55.000 0.00 0.00 35.57 4.04
4131 7536 0.391130 TCGGTTCATCCAAAGCCTCG 60.391 55.000 0.00 0.00 35.57 4.63
4132 7537 1.087501 GTCGGTTCATCCAAAGCCTC 58.912 55.000 0.00 0.00 35.57 4.70
4133 7538 0.693049 AGTCGGTTCATCCAAAGCCT 59.307 50.000 0.00 0.00 35.57 4.58
4134 7539 2.396590 TAGTCGGTTCATCCAAAGCC 57.603 50.000 0.00 0.00 35.57 4.35
4135 7540 2.614057 CCATAGTCGGTTCATCCAAAGC 59.386 50.000 0.00 0.00 35.57 3.51
4136 7541 3.623060 CACCATAGTCGGTTCATCCAAAG 59.377 47.826 0.00 0.00 37.07 2.77
4137 7542 3.605634 CACCATAGTCGGTTCATCCAAA 58.394 45.455 0.00 0.00 37.07 3.28
4138 7543 2.093181 CCACCATAGTCGGTTCATCCAA 60.093 50.000 0.00 0.00 37.07 3.53
4139 7544 1.484653 CCACCATAGTCGGTTCATCCA 59.515 52.381 0.00 0.00 37.07 3.41
4140 7545 1.485066 ACCACCATAGTCGGTTCATCC 59.515 52.381 0.00 0.00 37.07 3.51
4141 7546 2.981859 ACCACCATAGTCGGTTCATC 57.018 50.000 0.00 0.00 37.07 2.92
4145 7550 3.008594 TCAATGAACCACCATAGTCGGTT 59.991 43.478 0.00 0.00 45.64 4.44
4146 7551 2.569853 TCAATGAACCACCATAGTCGGT 59.430 45.455 0.00 0.00 41.07 4.69
4147 7552 3.198068 CTCAATGAACCACCATAGTCGG 58.802 50.000 0.00 0.00 0.00 4.79
4148 7553 3.198068 CCTCAATGAACCACCATAGTCG 58.802 50.000 0.00 0.00 0.00 4.18
4149 7554 2.945668 GCCTCAATGAACCACCATAGTC 59.054 50.000 0.00 0.00 0.00 2.59
4150 7555 2.578021 AGCCTCAATGAACCACCATAGT 59.422 45.455 0.00 0.00 0.00 2.12
4151 7556 3.287867 AGCCTCAATGAACCACCATAG 57.712 47.619 0.00 0.00 0.00 2.23
4152 7557 3.737559 AAGCCTCAATGAACCACCATA 57.262 42.857 0.00 0.00 0.00 2.74
4153 7558 2.564062 CAAAGCCTCAATGAACCACCAT 59.436 45.455 0.00 0.00 0.00 3.55
4154 7559 1.962807 CAAAGCCTCAATGAACCACCA 59.037 47.619 0.00 0.00 0.00 4.17
4155 7560 1.273327 CCAAAGCCTCAATGAACCACC 59.727 52.381 0.00 0.00 0.00 4.61
4156 7561 2.238521 TCCAAAGCCTCAATGAACCAC 58.761 47.619 0.00 0.00 0.00 4.16
4157 7562 2.673775 TCCAAAGCCTCAATGAACCA 57.326 45.000 0.00 0.00 0.00 3.67
4158 7563 3.091545 TCATCCAAAGCCTCAATGAACC 58.908 45.455 0.00 0.00 0.00 3.62
4159 7564 4.488879 GTTCATCCAAAGCCTCAATGAAC 58.511 43.478 9.86 9.86 44.98 3.18
4160 7565 3.511146 GGTTCATCCAAAGCCTCAATGAA 59.489 43.478 0.00 0.00 34.80 2.57
4161 7566 3.091545 GGTTCATCCAAAGCCTCAATGA 58.908 45.455 0.00 0.00 35.97 2.57
4162 7567 2.159338 CGGTTCATCCAAAGCCTCAATG 60.159 50.000 0.00 0.00 35.57 2.82
4163 7568 2.094675 CGGTTCATCCAAAGCCTCAAT 58.905 47.619 0.00 0.00 35.57 2.57
4164 7569 1.533625 CGGTTCATCCAAAGCCTCAA 58.466 50.000 0.00 0.00 35.57 3.02
4165 7570 0.322456 CCGGTTCATCCAAAGCCTCA 60.322 55.000 0.00 0.00 35.57 3.86
4166 7571 1.657751 GCCGGTTCATCCAAAGCCTC 61.658 60.000 1.90 0.00 35.57 4.70
4167 7572 1.678970 GCCGGTTCATCCAAAGCCT 60.679 57.895 1.90 0.00 35.57 4.58
4168 7573 0.393808 TAGCCGGTTCATCCAAAGCC 60.394 55.000 1.90 0.00 35.57 4.35
4169 7574 1.334869 CATAGCCGGTTCATCCAAAGC 59.665 52.381 1.90 0.00 35.57 3.51
4170 7575 1.949525 CCATAGCCGGTTCATCCAAAG 59.050 52.381 1.90 0.00 35.57 2.77
4171 7576 1.283613 ACCATAGCCGGTTCATCCAAA 59.716 47.619 1.90 0.00 34.91 3.28
4172 7577 0.916086 ACCATAGCCGGTTCATCCAA 59.084 50.000 1.90 0.00 34.91 3.53
4173 7578 0.180171 CACCATAGCCGGTTCATCCA 59.820 55.000 1.90 0.00 37.07 3.41
4174 7579 0.535102 CCACCATAGCCGGTTCATCC 60.535 60.000 1.90 0.00 37.07 3.51
4175 7580 0.180406 ACCACCATAGCCGGTTCATC 59.820 55.000 1.90 0.00 37.07 2.92
4176 7581 0.623723 AACCACCATAGCCGGTTCAT 59.376 50.000 1.90 0.00 38.69 2.57
4177 7582 2.071502 AACCACCATAGCCGGTTCA 58.928 52.632 1.90 0.00 38.69 3.18
4179 7584 0.623723 ATGAACCACCATAGCCGGTT 59.376 50.000 1.90 0.00 45.64 4.44
4180 7585 0.180406 GATGAACCACCATAGCCGGT 59.820 55.000 1.90 0.00 41.07 5.28
4181 7586 0.880278 CGATGAACCACCATAGCCGG 60.880 60.000 0.00 0.00 0.00 6.13
4182 7587 0.104120 TCGATGAACCACCATAGCCG 59.896 55.000 0.00 0.00 0.00 5.52
4183 7588 1.541233 CCTCGATGAACCACCATAGCC 60.541 57.143 0.00 0.00 0.00 3.93
4184 7589 1.871080 CCTCGATGAACCACCATAGC 58.129 55.000 0.00 0.00 0.00 2.97
4185 7590 1.414181 AGCCTCGATGAACCACCATAG 59.586 52.381 0.00 0.00 0.00 2.23
4186 7591 1.496060 AGCCTCGATGAACCACCATA 58.504 50.000 0.00 0.00 0.00 2.74
4187 7592 0.620556 AAGCCTCGATGAACCACCAT 59.379 50.000 0.00 0.00 0.00 3.55
4188 7593 0.400213 AAAGCCTCGATGAACCACCA 59.600 50.000 0.00 0.00 0.00 4.17
4189 7594 0.804989 CAAAGCCTCGATGAACCACC 59.195 55.000 0.00 0.00 0.00 4.61
4190 7595 0.804989 CCAAAGCCTCGATGAACCAC 59.195 55.000 0.00 0.00 0.00 4.16
4191 7596 0.690192 TCCAAAGCCTCGATGAACCA 59.310 50.000 0.00 0.00 0.00 3.67
4192 7597 1.672881 CATCCAAAGCCTCGATGAACC 59.327 52.381 0.00 0.00 36.33 3.62
4193 7598 1.064654 GCATCCAAAGCCTCGATGAAC 59.935 52.381 0.00 0.00 36.33 3.18
4194 7599 1.382522 GCATCCAAAGCCTCGATGAA 58.617 50.000 0.00 0.00 36.33 2.57
4195 7600 3.085208 GCATCCAAAGCCTCGATGA 57.915 52.632 0.00 0.00 36.33 2.92
4203 7608 2.548127 GAACCAGCGGCATCCAAAGC 62.548 60.000 1.45 0.00 0.00 3.51
4204 7609 1.243342 TGAACCAGCGGCATCCAAAG 61.243 55.000 1.45 0.00 0.00 2.77
4205 7610 0.611618 ATGAACCAGCGGCATCCAAA 60.612 50.000 1.45 0.00 0.00 3.28
4206 7611 1.001020 ATGAACCAGCGGCATCCAA 60.001 52.632 1.45 0.00 0.00 3.53
4207 7612 1.451927 GATGAACCAGCGGCATCCA 60.452 57.895 1.45 0.00 33.94 3.41
4208 7613 1.031571 TTGATGAACCAGCGGCATCC 61.032 55.000 1.45 0.00 38.06 3.51
4209 7614 0.379669 CTTGATGAACCAGCGGCATC 59.620 55.000 1.45 0.00 39.02 3.91
4210 7615 1.033746 CCTTGATGAACCAGCGGCAT 61.034 55.000 1.45 0.00 0.00 4.40
4211 7616 1.675310 CCTTGATGAACCAGCGGCA 60.675 57.895 1.45 0.00 0.00 5.69
4212 7617 3.056313 GCCTTGATGAACCAGCGGC 62.056 63.158 0.00 0.00 0.00 6.53
4213 7618 0.962356 AAGCCTTGATGAACCAGCGG 60.962 55.000 0.00 0.00 0.00 5.52
4214 7619 0.883833 AAAGCCTTGATGAACCAGCG 59.116 50.000 0.00 0.00 0.00 5.18
4215 7620 1.067354 CCAAAGCCTTGATGAACCAGC 60.067 52.381 0.00 0.00 34.14 4.85
4216 7621 2.517959 TCCAAAGCCTTGATGAACCAG 58.482 47.619 0.00 0.00 34.14 4.00
4217 7622 2.673775 TCCAAAGCCTTGATGAACCA 57.326 45.000 0.00 0.00 34.14 3.67
4218 7623 3.091545 TCATCCAAAGCCTTGATGAACC 58.908 45.455 5.29 0.00 34.14 3.62
4219 7624 3.426695 CGTCATCCAAAGCCTTGATGAAC 60.427 47.826 8.55 4.26 34.14 3.18
4220 7625 2.749076 CGTCATCCAAAGCCTTGATGAA 59.251 45.455 8.55 0.00 34.14 2.57
4221 7626 2.358957 CGTCATCCAAAGCCTTGATGA 58.641 47.619 3.94 3.94 34.14 2.92
4222 7627 1.202222 GCGTCATCCAAAGCCTTGATG 60.202 52.381 0.00 0.00 34.14 3.07
4223 7628 1.098050 GCGTCATCCAAAGCCTTGAT 58.902 50.000 0.00 0.00 34.14 2.57
4224 7629 0.036732 AGCGTCATCCAAAGCCTTGA 59.963 50.000 0.00 0.00 34.14 3.02
4225 7630 0.169672 CAGCGTCATCCAAAGCCTTG 59.830 55.000 0.00 0.00 0.00 3.61
4226 7631 0.962356 CCAGCGTCATCCAAAGCCTT 60.962 55.000 0.00 0.00 0.00 4.35
4227 7632 1.377725 CCAGCGTCATCCAAAGCCT 60.378 57.895 0.00 0.00 0.00 4.58
4228 7633 2.409870 CCCAGCGTCATCCAAAGCC 61.410 63.158 0.00 0.00 0.00 4.35
4229 7634 3.056313 GCCCAGCGTCATCCAAAGC 62.056 63.158 0.00 0.00 0.00 3.51
4230 7635 1.372087 GAGCCCAGCGTCATCCAAAG 61.372 60.000 0.00 0.00 0.00 2.77
4231 7636 1.377202 GAGCCCAGCGTCATCCAAA 60.377 57.895 0.00 0.00 0.00 3.28
4232 7637 2.244117 GAGAGCCCAGCGTCATCCAA 62.244 60.000 0.00 0.00 0.00 3.53
4233 7638 2.685017 AGAGCCCAGCGTCATCCA 60.685 61.111 0.00 0.00 0.00 3.41
4234 7639 2.107953 GAGAGCCCAGCGTCATCC 59.892 66.667 0.00 0.00 0.00 3.51
4235 7640 2.107953 GGAGAGCCCAGCGTCATC 59.892 66.667 0.00 0.00 34.14 2.92
4236 7641 2.685017 TGGAGAGCCCAGCGTCAT 60.685 61.111 0.00 0.00 40.82 3.06
4244 7649 1.988982 GACCCCTTCATGGAGAGCCC 61.989 65.000 1.24 0.00 38.35 5.19
4245 7650 1.529309 GACCCCTTCATGGAGAGCC 59.471 63.158 1.24 0.00 38.35 4.70
4246 7651 1.144936 CGACCCCTTCATGGAGAGC 59.855 63.158 1.24 0.00 38.35 4.09
4247 7652 0.687757 TCCGACCCCTTCATGGAGAG 60.688 60.000 1.24 0.00 38.35 3.20
4248 7653 1.390525 TCCGACCCCTTCATGGAGA 59.609 57.895 1.24 0.00 38.35 3.71
4249 7654 0.687757 TCTCCGACCCCTTCATGGAG 60.688 60.000 0.00 0.00 46.06 3.86
4250 7655 0.687757 CTCTCCGACCCCTTCATGGA 60.688 60.000 0.00 0.00 38.35 3.41
4251 7656 1.690219 CCTCTCCGACCCCTTCATGG 61.690 65.000 0.00 0.00 0.00 3.66
4252 7657 1.826024 CCTCTCCGACCCCTTCATG 59.174 63.158 0.00 0.00 0.00 3.07
4253 7658 2.066999 GCCTCTCCGACCCCTTCAT 61.067 63.158 0.00 0.00 0.00 2.57
4254 7659 2.683933 GCCTCTCCGACCCCTTCA 60.684 66.667 0.00 0.00 0.00 3.02
4255 7660 2.364448 AGCCTCTCCGACCCCTTC 60.364 66.667 0.00 0.00 0.00 3.46
4256 7661 2.685380 CAGCCTCTCCGACCCCTT 60.685 66.667 0.00 0.00 0.00 3.95
4257 7662 4.787280 CCAGCCTCTCCGACCCCT 62.787 72.222 0.00 0.00 0.00 4.79
4261 7666 3.708220 CTTCGCCAGCCTCTCCGAC 62.708 68.421 0.00 0.00 0.00 4.79
4262 7667 3.452786 CTTCGCCAGCCTCTCCGA 61.453 66.667 0.00 0.00 0.00 4.55
4283 7688 4.858433 TGGATTACGTCGCCGCCG 62.858 66.667 0.00 0.00 37.70 6.46
4284 7689 3.259751 GTGGATTACGTCGCCGCC 61.260 66.667 0.00 0.00 37.70 6.13
4293 7698 0.903187 CGTCGTTCGTCGTGGATTAC 59.097 55.000 4.05 0.00 40.80 1.89
4294 7699 0.179192 CCGTCGTTCGTCGTGGATTA 60.179 55.000 10.21 0.00 40.80 1.75
4295 7700 1.443194 CCGTCGTTCGTCGTGGATT 60.443 57.895 10.21 0.00 40.80 3.01
4296 7701 2.177531 CCGTCGTTCGTCGTGGAT 59.822 61.111 10.21 0.00 40.80 3.41
4297 7702 4.688419 GCCGTCGTTCGTCGTGGA 62.688 66.667 10.21 0.00 40.80 4.02
4298 7703 4.986587 TGCCGTCGTTCGTCGTGG 62.987 66.667 10.21 7.27 40.80 4.94
4299 7704 3.025743 TTGCCGTCGTTCGTCGTG 61.026 61.111 10.21 4.31 40.80 4.35
4300 7705 3.026311 GTTGCCGTCGTTCGTCGT 61.026 61.111 10.21 0.00 40.80 4.34
4301 7706 2.983977 CTGTTGCCGTCGTTCGTCG 61.984 63.158 5.08 5.08 41.41 5.12
4302 7707 2.654912 CCTGTTGCCGTCGTTCGTC 61.655 63.158 0.00 0.00 37.94 4.20
4303 7708 2.660552 CCTGTTGCCGTCGTTCGT 60.661 61.111 0.00 0.00 37.94 3.85
4304 7709 2.355363 TCCTGTTGCCGTCGTTCG 60.355 61.111 0.00 0.00 39.52 3.95
4305 7710 0.878961 AACTCCTGTTGCCGTCGTTC 60.879 55.000 0.00 0.00 34.71 3.95
4306 7711 1.145377 AACTCCTGTTGCCGTCGTT 59.855 52.632 0.00 0.00 34.71 3.85
4307 7712 1.594293 CAACTCCTGTTGCCGTCGT 60.594 57.895 0.00 0.00 45.57 4.34
4308 7713 3.244105 CAACTCCTGTTGCCGTCG 58.756 61.111 0.00 0.00 45.57 5.12
4316 7721 1.150135 TCCTCCTTCCTCAACTCCTGT 59.850 52.381 0.00 0.00 0.00 4.00
4323 7728 1.195115 CCATCGTCCTCCTTCCTCAA 58.805 55.000 0.00 0.00 0.00 3.02
4329 7734 2.893398 GTCGCCATCGTCCTCCTT 59.107 61.111 0.00 0.00 36.96 3.36
4330 7735 3.518998 CGTCGCCATCGTCCTCCT 61.519 66.667 0.00 0.00 36.96 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.