Multiple sequence alignment - TraesCS7B01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G185800 chr7B 100.000 3627 0 0 1 3627 304522802 304526428 0.000000e+00 6698.0
1 TraesCS7B01G185800 chr7B 100.000 41 0 0 2750 2790 304525510 304525550 3.880000e-10 76.8
2 TraesCS7B01G185800 chr7B 100.000 41 0 0 2709 2749 304525551 304525591 3.880000e-10 76.8
3 TraesCS7B01G185800 chr7D 95.749 2752 111 4 1 2749 309914925 309912177 0.000000e+00 4429.0
4 TraesCS7B01G185800 chr7D 90.203 541 30 10 2750 3270 309912217 309911680 0.000000e+00 684.0
5 TraesCS7B01G185800 chr7D 100.000 29 0 0 432 460 484258737 484258765 2.000000e-03 54.7
6 TraesCS7B01G185800 chr7A 96.807 2067 65 1 684 2749 349686610 349684544 0.000000e+00 3450.0
7 TraesCS7B01G185800 chr7A 88.170 541 41 9 2750 3270 349684584 349684047 1.110000e-174 623.0
8 TraesCS7B01G185800 chr7A 92.151 344 21 4 3265 3604 165530562 165530221 7.040000e-132 481.0
9 TraesCS7B01G185800 chr7A 81.395 387 47 15 3256 3627 615627835 615627459 3.540000e-75 292.0
10 TraesCS7B01G185800 chr7A 94.286 35 1 1 421 454 10224738 10224704 7.000000e-03 52.8
11 TraesCS7B01G185800 chr1D 93.989 366 15 4 3267 3627 28958046 28958409 6.850000e-152 547.0
12 TraesCS7B01G185800 chr1D 85.345 116 15 1 3265 3378 24614245 24614130 6.360000e-23 119.0
13 TraesCS7B01G185800 chr6B 93.132 364 19 3 3266 3625 605765454 605765815 2.480000e-146 529.0
14 TraesCS7B01G185800 chr3A 92.391 368 21 5 3264 3627 271641440 271641076 5.370000e-143 518.0
15 TraesCS7B01G185800 chr3A 90.476 42 2 2 421 461 164412362 164412402 2.000000e-03 54.7
16 TraesCS7B01G185800 chr3A 94.286 35 1 1 427 461 565473183 565473150 7.000000e-03 52.8
17 TraesCS7B01G185800 chr5A 91.870 369 22 5 3264 3627 237940368 237940733 3.230000e-140 508.0
18 TraesCS7B01G185800 chr5A 93.182 44 3 0 1092 1135 678583821 678583778 8.410000e-07 65.8
19 TraesCS7B01G185800 chr6D 73.363 1115 266 29 1494 2588 88503115 88504218 5.680000e-103 385.0
20 TraesCS7B01G185800 chr6D 100.000 28 0 0 1304 1331 88502925 88502952 7.000000e-03 52.8
21 TraesCS7B01G185800 chr6A 73.022 1112 267 31 1495 2585 106455764 106456863 9.570000e-96 361.0
22 TraesCS7B01G185800 chr6A 100.000 28 0 0 1304 1331 106455573 106455600 7.000000e-03 52.8
23 TraesCS7B01G185800 chr4A 80.319 376 51 16 3265 3627 417634168 417633803 2.780000e-66 263.0
24 TraesCS7B01G185800 chr1B 86.339 183 16 6 3430 3610 193624959 193625134 1.330000e-44 191.0
25 TraesCS7B01G185800 chr1B 100.000 28 0 0 427 454 91553606 91553633 7.000000e-03 52.8
26 TraesCS7B01G185800 chr2A 84.500 200 20 8 3422 3618 202776416 202776607 1.720000e-43 187.0
27 TraesCS7B01G185800 chr2A 80.408 245 44 4 1305 1547 183550321 183550563 2.220000e-42 183.0
28 TraesCS7B01G185800 chr2A 84.848 66 10 0 1074 1139 578117870 578117935 2.340000e-07 67.6
29 TraesCS7B01G185800 chr2D 80.408 245 44 4 1305 1547 166609926 166609684 2.220000e-42 183.0
30 TraesCS7B01G185800 chr2D 100.000 28 0 0 427 454 24262693 24262720 7.000000e-03 52.8
31 TraesCS7B01G185800 chr2B 79.592 245 46 4 1305 1547 231233404 231233646 4.810000e-39 172.0
32 TraesCS7B01G185800 chr2B 83.708 178 25 4 3390 3564 368947800 368947624 8.060000e-37 165.0
33 TraesCS7B01G185800 chr2B 84.848 66 10 0 1074 1139 484591452 484591517 2.340000e-07 67.6
34 TraesCS7B01G185800 chr3D 83.846 130 17 3 3253 3378 335218230 335218101 1.770000e-23 121.0
35 TraesCS7B01G185800 chr3D 100.000 28 0 0 427 454 419931099 419931126 7.000000e-03 52.8
36 TraesCS7B01G185800 chr5B 85.470 117 13 3 3265 3378 590252124 590252009 6.360000e-23 119.0
37 TraesCS7B01G185800 chr5B 83.529 85 12 2 1053 1136 764837 764754 1.080000e-10 78.7
38 TraesCS7B01G185800 chr5D 87.234 94 12 0 1043 1136 1887287 1887194 1.380000e-19 108.0
39 TraesCS7B01G185800 chr4B 88.136 59 7 0 1077 1135 640027282 640027224 1.810000e-08 71.3
40 TraesCS7B01G185800 chr4D 93.182 44 3 0 1092 1135 498063179 498063136 8.410000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G185800 chr7B 304522802 304526428 3626 False 2283.866667 6698 100.0000 1 3627 3 chr7B.!!$F1 3626
1 TraesCS7B01G185800 chr7D 309911680 309914925 3245 True 2556.500000 4429 92.9760 1 3270 2 chr7D.!!$R1 3269
2 TraesCS7B01G185800 chr7A 349684047 349686610 2563 True 2036.500000 3450 92.4885 684 3270 2 chr7A.!!$R4 2586
3 TraesCS7B01G185800 chr6D 88502925 88504218 1293 False 218.900000 385 86.6815 1304 2588 2 chr6D.!!$F1 1284
4 TraesCS7B01G185800 chr6A 106455573 106456863 1290 False 206.900000 361 86.5110 1304 2585 2 chr6A.!!$F1 1281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.250381 TTTGGAAAACTAGGCGGCGA 60.250 50.000 12.98 0.00 0.00 5.54 F
761 764 1.072965 AGCTTAGACTTGTGCCAAGCT 59.927 47.619 13.00 12.76 45.29 3.74 F
1849 1888 0.728466 GTACCTCAGACGTGCACGAC 60.728 60.000 42.94 36.08 43.02 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1864 0.682209 GCACGTCTGAGGTACCCCTA 60.682 60.0 8.74 0.0 42.86 3.53 R
1951 1993 0.750911 GGAAGCAGGGGATGAGCAAG 60.751 60.0 0.00 0.0 0.00 4.01 R
3284 3347 0.107703 TAGGTCTCTGCGCCATTTGG 60.108 55.0 4.18 0.0 38.53 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.712539 CACGCGACTTGCAAACCA 59.287 55.556 15.93 0.00 46.97 3.67
54 55 6.530019 AGGATTGGTGGAATTTGATGTAAC 57.470 37.500 0.00 0.00 0.00 2.50
59 60 6.189677 TGGTGGAATTTGATGTAACGAATC 57.810 37.500 0.00 0.00 0.00 2.52
60 61 5.707764 TGGTGGAATTTGATGTAACGAATCA 59.292 36.000 0.00 0.00 32.24 2.57
85 86 4.507869 GGTGGGACTATTGGGTAACAAACT 60.508 45.833 0.00 0.00 43.46 2.66
88 89 4.941873 GGGACTATTGGGTAACAAACTCTG 59.058 45.833 0.00 0.00 43.46 3.35
96 97 6.591750 TGGGTAACAAACTCTGTTTCAAAA 57.408 33.333 0.00 0.00 46.49 2.44
151 152 2.537143 TCTGTACAGAAAGGGAGGTCC 58.463 52.381 23.24 0.00 33.91 4.46
169 170 6.434340 GGAGGTCCTTAATTTGAACTTCACAT 59.566 38.462 0.00 0.00 0.00 3.21
175 176 4.525912 AATTTGAACTTCACATGAGCCC 57.474 40.909 0.00 0.00 0.00 5.19
194 195 5.650543 AGCCCAAATATTTTTAGTTGCTCG 58.349 37.500 0.00 0.00 0.00 5.03
205 206 7.766219 TTTTTAGTTGCTCGCTATTACCTAG 57.234 36.000 0.00 0.00 0.00 3.02
207 208 7.572523 TTTAGTTGCTCGCTATTACCTAGTA 57.427 36.000 0.00 0.00 0.00 1.82
252 253 1.303236 CCATGCAGGGGACGAACAA 60.303 57.895 10.25 0.00 0.00 2.83
254 255 1.176527 CATGCAGGGGACGAACAAAT 58.823 50.000 0.00 0.00 0.00 2.32
255 256 1.545582 CATGCAGGGGACGAACAAATT 59.454 47.619 0.00 0.00 0.00 1.82
256 257 1.698506 TGCAGGGGACGAACAAATTT 58.301 45.000 0.00 0.00 0.00 1.82
257 258 2.035632 TGCAGGGGACGAACAAATTTT 58.964 42.857 0.00 0.00 0.00 1.82
258 259 2.432510 TGCAGGGGACGAACAAATTTTT 59.567 40.909 0.00 0.00 0.00 1.94
279 280 0.250381 TTTGGAAAACTAGGCGGCGA 60.250 50.000 12.98 0.00 0.00 5.54
281 282 2.104859 GGAAAACTAGGCGGCGACC 61.105 63.158 10.28 11.10 0.00 4.79
307 308 7.175641 CCAGAACAAGAAACTACAGGATTGAAT 59.824 37.037 0.00 0.00 0.00 2.57
318 319 8.812513 ACTACAGGATTGAATTGATTGATTGA 57.187 30.769 0.00 0.00 0.00 2.57
656 659 5.740513 GCACTTCTCAAGTTCTTGGTCTACT 60.741 44.000 11.82 0.00 40.46 2.57
657 660 5.694006 CACTTCTCAAGTTCTTGGTCTACTG 59.306 44.000 11.82 0.00 40.46 2.74
659 662 3.006967 TCTCAAGTTCTTGGTCTACTGCC 59.993 47.826 11.82 0.00 0.00 4.85
761 764 1.072965 AGCTTAGACTTGTGCCAAGCT 59.927 47.619 13.00 12.76 45.29 3.74
956 959 1.748493 CTCCTCTTCTTCCTCCTCGTG 59.252 57.143 0.00 0.00 0.00 4.35
990 993 1.754803 CCATCACCGTTGTCTAGCCTA 59.245 52.381 0.00 0.00 0.00 3.93
1140 1143 2.786495 CGGCATCTCTGGTACCGCT 61.786 63.158 7.57 0.00 37.05 5.52
1153 1156 7.286087 TCTCTGGTACCGCTAATTACTTCATTA 59.714 37.037 7.57 0.00 0.00 1.90
1202 1205 6.302269 ACTGACCATGAGAGAGTGAAAATTT 58.698 36.000 0.00 0.00 0.00 1.82
1282 1285 4.360964 CCGTCGGTGTACGCCCAA 62.361 66.667 19.71 5.49 43.86 4.12
1444 1447 1.597797 CCATGTTCTGTGGCGGCATT 61.598 55.000 17.19 0.00 0.00 3.56
1825 1864 0.846693 AGAAGGTGCTGGTCAAGGTT 59.153 50.000 0.00 0.00 0.00 3.50
1831 1870 0.770557 TGCTGGTCAAGGTTAGGGGT 60.771 55.000 0.00 0.00 0.00 4.95
1849 1888 0.728466 GTACCTCAGACGTGCACGAC 60.728 60.000 42.94 36.08 43.02 4.34
1951 1993 1.304381 TCCCCAGCTGACAATTGCC 60.304 57.895 17.39 0.00 0.00 4.52
1952 1994 1.304713 CCCCAGCTGACAATTGCCT 60.305 57.895 17.39 0.00 0.00 4.75
1965 2007 0.396695 ATTGCCTTGCTCATCCCCTG 60.397 55.000 0.00 0.00 0.00 4.45
2194 2236 2.091278 CCAGATAGTGGTGGGGACTCTA 60.091 54.545 0.00 0.00 42.17 2.43
2338 2380 2.594592 GTGCCCAGCGAGGTGTTT 60.595 61.111 1.52 0.00 34.66 2.83
2633 2675 0.675837 ACACGGCGTCTAGTCTAGCA 60.676 55.000 10.85 0.00 0.00 3.49
2681 2724 5.179368 TGTTTGTGCTTCAGATGTAAGTAGC 59.821 40.000 0.00 0.00 0.00 3.58
2736 2779 8.361592 ACTACCGTCGGATTTTAATTCATAAG 57.638 34.615 20.51 0.00 0.00 1.73
2737 2780 7.983484 ACTACCGTCGGATTTTAATTCATAAGT 59.017 33.333 20.51 0.00 0.00 2.24
2738 2781 7.619964 ACCGTCGGATTTTAATTCATAAGTT 57.380 32.000 20.51 0.00 0.00 2.66
2739 2782 8.047413 ACCGTCGGATTTTAATTCATAAGTTT 57.953 30.769 20.51 0.00 0.00 2.66
2740 2783 8.517056 ACCGTCGGATTTTAATTCATAAGTTTT 58.483 29.630 20.51 0.00 0.00 2.43
2741 2784 9.991388 CCGTCGGATTTTAATTCATAAGTTTTA 57.009 29.630 4.91 0.00 0.00 1.52
2758 2801 9.813446 ATAAGTTTTAGGACATCTTTACTACCG 57.187 33.333 0.00 0.00 0.00 4.02
2759 2802 7.237209 AGTTTTAGGACATCTTTACTACCGT 57.763 36.000 0.00 0.00 0.00 4.83
2760 2803 7.318893 AGTTTTAGGACATCTTTACTACCGTC 58.681 38.462 0.00 0.00 0.00 4.79
2761 2804 5.490139 TTAGGACATCTTTACTACCGTCG 57.510 43.478 0.00 0.00 0.00 5.12
2762 2805 2.686915 AGGACATCTTTACTACCGTCGG 59.313 50.000 10.48 10.48 0.00 4.79
2763 2806 2.684881 GGACATCTTTACTACCGTCGGA 59.315 50.000 20.51 0.31 0.00 4.55
2764 2807 3.317430 GGACATCTTTACTACCGTCGGAT 59.683 47.826 20.51 4.87 0.00 4.18
2765 2808 4.202090 GGACATCTTTACTACCGTCGGATT 60.202 45.833 20.51 3.69 0.00 3.01
2766 2809 5.334724 ACATCTTTACTACCGTCGGATTT 57.665 39.130 20.51 3.30 0.00 2.17
2767 2810 5.727434 ACATCTTTACTACCGTCGGATTTT 58.273 37.500 20.51 0.00 0.00 1.82
2768 2811 6.866480 ACATCTTTACTACCGTCGGATTTTA 58.134 36.000 20.51 0.00 0.00 1.52
2769 2812 7.322664 ACATCTTTACTACCGTCGGATTTTAA 58.677 34.615 20.51 6.77 0.00 1.52
2770 2813 7.983484 ACATCTTTACTACCGTCGGATTTTAAT 59.017 33.333 20.51 0.00 0.00 1.40
2771 2814 8.823818 CATCTTTACTACCGTCGGATTTTAATT 58.176 33.333 20.51 0.00 0.00 1.40
2772 2815 8.411318 TCTTTACTACCGTCGGATTTTAATTC 57.589 34.615 20.51 0.00 0.00 2.17
2773 2816 8.034215 TCTTTACTACCGTCGGATTTTAATTCA 58.966 33.333 20.51 0.00 0.00 2.57
2774 2817 8.721019 TTTACTACCGTCGGATTTTAATTCAT 57.279 30.769 20.51 0.00 0.00 2.57
2775 2818 9.814899 TTTACTACCGTCGGATTTTAATTCATA 57.185 29.630 20.51 0.00 0.00 2.15
2776 2819 9.814899 TTACTACCGTCGGATTTTAATTCATAA 57.185 29.630 20.51 0.00 0.00 1.90
2851 2894 7.736447 ATGTAGAGATAGGCATTTGTTTAGC 57.264 36.000 0.00 0.00 0.00 3.09
2858 2901 4.782019 AGGCATTTGTTTAGCGATTTCA 57.218 36.364 0.00 0.00 0.00 2.69
2863 2906 5.441485 GCATTTGTTTAGCGATTTCACGTTC 60.441 40.000 0.00 0.00 35.59 3.95
2866 2909 6.528014 TTGTTTAGCGATTTCACGTTCTAA 57.472 33.333 0.00 0.00 35.59 2.10
2873 2916 6.721321 AGCGATTTCACGTTCTAAAGAAAAA 58.279 32.000 1.27 0.00 35.58 1.94
2954 2997 9.820229 CAACATTGTAAGCGATAGAGTTTAAAA 57.180 29.630 0.00 0.00 39.76 1.52
2997 3040 0.984230 TCAGCTTCCATCCCGACTTT 59.016 50.000 0.00 0.00 0.00 2.66
3062 3105 5.443693 GCGTCGTTGTTTATTTCACTATCGT 60.444 40.000 0.00 0.00 0.00 3.73
3064 3107 6.399249 CGTCGTTGTTTATTTCACTATCGTGT 60.399 38.462 0.00 0.00 41.89 4.49
3085 3128 5.621228 GTGTTGAACGTCAAATGATCTTCAC 59.379 40.000 0.00 0.00 38.22 3.18
3120 3163 7.931015 ATATATAACACCTCCTGAAGAACCA 57.069 36.000 0.00 0.00 0.00 3.67
3174 3234 8.085909 CGTGTTACCATATTATACACATGGAGA 58.914 37.037 11.59 0.22 41.53 3.71
3191 3252 3.081804 GGAGATAACCAGGGTGTGTTTG 58.918 50.000 0.00 0.00 0.00 2.93
3193 3254 4.394729 GAGATAACCAGGGTGTGTTTGAA 58.605 43.478 0.00 0.00 0.00 2.69
3237 3300 4.587584 TGTCATGGTGTTGTACGTAAGA 57.412 40.909 0.00 0.00 43.62 2.10
3241 3304 6.754675 TGTCATGGTGTTGTACGTAAGATATG 59.245 38.462 0.00 0.00 43.62 1.78
3253 3316 4.517832 ACGTAAGATATGATGTCTACGGCA 59.482 41.667 17.70 0.00 43.62 5.69
3255 3318 4.937201 AAGATATGATGTCTACGGCACA 57.063 40.909 0.00 0.00 0.00 4.57
3267 3330 6.218019 TGTCTACGGCACATAATTACCATAC 58.782 40.000 0.00 0.00 0.00 2.39
3270 3333 7.754027 GTCTACGGCACATAATTACCATACTAG 59.246 40.741 0.00 0.00 0.00 2.57
3271 3334 6.659745 ACGGCACATAATTACCATACTAGA 57.340 37.500 0.00 0.00 0.00 2.43
3272 3335 7.241042 ACGGCACATAATTACCATACTAGAT 57.759 36.000 0.00 0.00 0.00 1.98
3273 3336 7.097192 ACGGCACATAATTACCATACTAGATG 58.903 38.462 0.00 0.00 0.00 2.90
3274 3337 7.039293 ACGGCACATAATTACCATACTAGATGA 60.039 37.037 0.00 0.00 0.00 2.92
3275 3338 7.275779 CGGCACATAATTACCATACTAGATGAC 59.724 40.741 0.00 0.00 0.00 3.06
3276 3339 7.549488 GGCACATAATTACCATACTAGATGACC 59.451 40.741 0.00 0.00 0.00 4.02
3277 3340 8.094548 GCACATAATTACCATACTAGATGACCA 58.905 37.037 0.00 0.00 0.00 4.02
3278 3341 9.645059 CACATAATTACCATACTAGATGACCAG 57.355 37.037 0.00 0.00 0.00 4.00
3279 3342 9.381038 ACATAATTACCATACTAGATGACCAGT 57.619 33.333 0.00 0.00 0.00 4.00
3282 3345 4.408182 ACCATACTAGATGACCAGTTGC 57.592 45.455 0.00 0.00 0.00 4.17
3283 3346 3.181475 ACCATACTAGATGACCAGTTGCG 60.181 47.826 0.00 0.00 0.00 4.85
3284 3347 2.579207 TACTAGATGACCAGTTGCGC 57.421 50.000 0.00 0.00 0.00 6.09
3285 3348 0.108138 ACTAGATGACCAGTTGCGCC 60.108 55.000 4.18 0.00 0.00 6.53
3286 3349 0.108186 CTAGATGACCAGTTGCGCCA 60.108 55.000 4.18 0.00 0.00 5.69
3287 3350 0.323302 TAGATGACCAGTTGCGCCAA 59.677 50.000 4.18 0.00 0.00 4.52
3288 3351 0.537143 AGATGACCAGTTGCGCCAAA 60.537 50.000 4.18 0.00 0.00 3.28
3289 3352 0.527565 GATGACCAGTTGCGCCAAAT 59.472 50.000 4.18 0.00 0.00 2.32
3290 3353 0.244450 ATGACCAGTTGCGCCAAATG 59.756 50.000 4.18 8.94 38.85 2.32
3301 3364 3.190878 CCAAATGGCGCAGAGACC 58.809 61.111 10.83 0.00 0.00 3.85
3302 3365 1.377725 CCAAATGGCGCAGAGACCT 60.378 57.895 10.83 0.00 0.00 3.85
3303 3366 0.107703 CCAAATGGCGCAGAGACCTA 60.108 55.000 10.83 0.00 0.00 3.08
3304 3367 1.475751 CCAAATGGCGCAGAGACCTAT 60.476 52.381 10.83 0.00 0.00 2.57
3305 3368 2.292267 CAAATGGCGCAGAGACCTATT 58.708 47.619 10.83 0.00 0.00 1.73
3306 3369 2.684881 CAAATGGCGCAGAGACCTATTT 59.315 45.455 10.83 0.00 0.00 1.40
3307 3370 3.838244 AATGGCGCAGAGACCTATTTA 57.162 42.857 10.83 0.00 0.00 1.40
3308 3371 3.838244 ATGGCGCAGAGACCTATTTAA 57.162 42.857 10.83 0.00 0.00 1.52
3309 3372 3.620427 TGGCGCAGAGACCTATTTAAA 57.380 42.857 10.83 0.00 0.00 1.52
3310 3373 3.945346 TGGCGCAGAGACCTATTTAAAA 58.055 40.909 10.83 0.00 0.00 1.52
3311 3374 3.687698 TGGCGCAGAGACCTATTTAAAAC 59.312 43.478 10.83 0.00 0.00 2.43
3312 3375 3.064958 GGCGCAGAGACCTATTTAAAACC 59.935 47.826 10.83 0.00 0.00 3.27
3313 3376 3.687698 GCGCAGAGACCTATTTAAAACCA 59.312 43.478 0.30 0.00 0.00 3.67
3314 3377 4.335594 GCGCAGAGACCTATTTAAAACCAT 59.664 41.667 0.30 0.00 0.00 3.55
3315 3378 5.730568 GCGCAGAGACCTATTTAAAACCATG 60.731 44.000 0.30 0.00 0.00 3.66
3316 3379 5.354234 CGCAGAGACCTATTTAAAACCATGT 59.646 40.000 0.00 0.00 0.00 3.21
3317 3380 6.555315 GCAGAGACCTATTTAAAACCATGTG 58.445 40.000 0.00 0.00 0.00 3.21
3318 3381 6.555315 CAGAGACCTATTTAAAACCATGTGC 58.445 40.000 0.00 0.00 0.00 4.57
3319 3382 6.375455 CAGAGACCTATTTAAAACCATGTGCT 59.625 38.462 0.00 0.00 0.00 4.40
3320 3383 6.599638 AGAGACCTATTTAAAACCATGTGCTC 59.400 38.462 0.00 0.00 0.00 4.26
3321 3384 6.245408 AGACCTATTTAAAACCATGTGCTCA 58.755 36.000 0.00 0.00 0.00 4.26
3322 3385 6.891908 AGACCTATTTAAAACCATGTGCTCAT 59.108 34.615 0.00 0.00 34.21 2.90
3323 3386 7.397192 AGACCTATTTAAAACCATGTGCTCATT 59.603 33.333 0.00 0.00 31.15 2.57
3324 3387 7.322664 ACCTATTTAAAACCATGTGCTCATTG 58.677 34.615 0.00 0.00 31.15 2.82
3325 3388 7.178274 ACCTATTTAAAACCATGTGCTCATTGA 59.822 33.333 6.82 0.00 31.15 2.57
3326 3389 8.034215 CCTATTTAAAACCATGTGCTCATTGAA 58.966 33.333 6.82 0.00 31.15 2.69
3327 3390 9.421806 CTATTTAAAACCATGTGCTCATTGAAA 57.578 29.630 6.82 0.00 31.15 2.69
3328 3391 8.851541 ATTTAAAACCATGTGCTCATTGAAAT 57.148 26.923 6.82 0.00 31.15 2.17
3329 3392 8.674263 TTTAAAACCATGTGCTCATTGAAATT 57.326 26.923 6.82 2.27 31.15 1.82
3330 3393 9.770097 TTTAAAACCATGTGCTCATTGAAATTA 57.230 25.926 6.82 1.51 31.15 1.40
3331 3394 9.941325 TTAAAACCATGTGCTCATTGAAATTAT 57.059 25.926 6.82 0.00 31.15 1.28
3332 3395 8.851541 AAAACCATGTGCTCATTGAAATTATT 57.148 26.923 6.82 0.00 31.15 1.40
3333 3396 8.851541 AAACCATGTGCTCATTGAAATTATTT 57.148 26.923 6.82 0.00 31.15 1.40
3334 3397 7.837202 ACCATGTGCTCATTGAAATTATTTG 57.163 32.000 6.82 0.00 31.15 2.32
3335 3398 6.314400 ACCATGTGCTCATTGAAATTATTTGC 59.686 34.615 6.82 0.00 31.15 3.68
3336 3399 6.314152 CCATGTGCTCATTGAAATTATTTGCA 59.686 34.615 0.00 0.00 31.15 4.08
3337 3400 7.011950 CCATGTGCTCATTGAAATTATTTGCAT 59.988 33.333 0.00 0.00 31.15 3.96
3338 3401 7.908827 TGTGCTCATTGAAATTATTTGCATT 57.091 28.000 0.00 0.00 0.00 3.56
3339 3402 8.325421 TGTGCTCATTGAAATTATTTGCATTT 57.675 26.923 0.00 0.00 0.00 2.32
3340 3403 8.784994 TGTGCTCATTGAAATTATTTGCATTTT 58.215 25.926 0.00 0.00 0.00 1.82
3341 3404 9.615295 GTGCTCATTGAAATTATTTGCATTTTT 57.385 25.926 0.00 0.00 0.00 1.94
3373 3436 8.927675 ACTTTGTGTTTGGGTATATGTTAAGA 57.072 30.769 0.00 0.00 0.00 2.10
3374 3437 9.357161 ACTTTGTGTTTGGGTATATGTTAAGAA 57.643 29.630 0.00 0.00 0.00 2.52
3375 3438 9.620660 CTTTGTGTTTGGGTATATGTTAAGAAC 57.379 33.333 0.00 0.00 0.00 3.01
3376 3439 8.927675 TTGTGTTTGGGTATATGTTAAGAACT 57.072 30.769 0.00 0.00 0.00 3.01
3377 3440 8.927675 TGTGTTTGGGTATATGTTAAGAACTT 57.072 30.769 0.00 0.00 0.00 2.66
3378 3441 8.788806 TGTGTTTGGGTATATGTTAAGAACTTG 58.211 33.333 0.00 0.00 0.00 3.16
3379 3442 8.241367 GTGTTTGGGTATATGTTAAGAACTTGG 58.759 37.037 0.00 0.00 0.00 3.61
3380 3443 7.094118 TGTTTGGGTATATGTTAAGAACTTGGC 60.094 37.037 0.00 0.00 0.00 4.52
3381 3444 5.442391 TGGGTATATGTTAAGAACTTGGCC 58.558 41.667 0.00 0.00 0.00 5.36
3382 3445 5.192923 TGGGTATATGTTAAGAACTTGGCCT 59.807 40.000 3.32 0.00 0.00 5.19
3383 3446 6.127101 GGGTATATGTTAAGAACTTGGCCTT 58.873 40.000 3.32 0.00 0.00 4.35
3384 3447 6.605995 GGGTATATGTTAAGAACTTGGCCTTT 59.394 38.462 3.32 0.00 0.00 3.11
3385 3448 7.123697 GGGTATATGTTAAGAACTTGGCCTTTT 59.876 37.037 3.32 0.00 0.00 2.27
3386 3449 7.973944 GGTATATGTTAAGAACTTGGCCTTTTG 59.026 37.037 3.32 0.00 0.00 2.44
3387 3450 5.869649 ATGTTAAGAACTTGGCCTTTTGT 57.130 34.783 3.32 0.00 0.00 2.83
3388 3451 6.969993 ATGTTAAGAACTTGGCCTTTTGTA 57.030 33.333 3.32 0.00 0.00 2.41
3389 3452 6.969993 TGTTAAGAACTTGGCCTTTTGTAT 57.030 33.333 3.32 0.00 0.00 2.29
3390 3453 8.644374 ATGTTAAGAACTTGGCCTTTTGTATA 57.356 30.769 3.32 0.00 0.00 1.47
3391 3454 8.466617 TGTTAAGAACTTGGCCTTTTGTATAA 57.533 30.769 3.32 0.00 0.00 0.98
3392 3455 8.915036 TGTTAAGAACTTGGCCTTTTGTATAAA 58.085 29.630 3.32 0.00 0.00 1.40
3393 3456 9.752961 GTTAAGAACTTGGCCTTTTGTATAAAA 57.247 29.630 3.32 0.00 34.75 1.52
3411 3474 9.502091 TGTATAAAAGTTTGATTGTACAGAGCT 57.498 29.630 0.00 0.00 31.08 4.09
3415 3478 6.487689 AAGTTTGATTGTACAGAGCTAAGC 57.512 37.500 0.00 0.00 0.00 3.09
3416 3479 5.799213 AGTTTGATTGTACAGAGCTAAGCT 58.201 37.500 0.00 0.00 43.88 3.74
3431 3494 6.713792 AGCTAAGCTCTCGTAAAAAGAAAG 57.286 37.500 0.00 0.00 30.62 2.62
3432 3495 6.456501 AGCTAAGCTCTCGTAAAAAGAAAGA 58.543 36.000 0.00 0.00 30.62 2.52
3433 3496 7.100409 AGCTAAGCTCTCGTAAAAAGAAAGAT 58.900 34.615 0.00 0.00 30.62 2.40
3434 3497 7.064016 AGCTAAGCTCTCGTAAAAAGAAAGATG 59.936 37.037 0.00 0.00 30.62 2.90
3435 3498 6.487689 AAGCTCTCGTAAAAAGAAAGATGG 57.512 37.500 0.00 0.00 0.00 3.51
3436 3499 4.393371 AGCTCTCGTAAAAAGAAAGATGGC 59.607 41.667 0.00 0.00 0.00 4.40
3437 3500 4.154195 GCTCTCGTAAAAAGAAAGATGGCA 59.846 41.667 0.00 0.00 0.00 4.92
3438 3501 5.334879 GCTCTCGTAAAAAGAAAGATGGCAA 60.335 40.000 0.00 0.00 0.00 4.52
3439 3502 5.997385 TCTCGTAAAAAGAAAGATGGCAAC 58.003 37.500 0.00 0.00 0.00 4.17
3455 3518 4.568152 GGCAACAACAGAGTACAATTGT 57.432 40.909 16.68 16.68 36.86 2.71
3456 3519 5.682943 GGCAACAACAGAGTACAATTGTA 57.317 39.130 14.35 14.35 34.24 2.41
3457 3520 6.254281 GGCAACAACAGAGTACAATTGTAT 57.746 37.500 20.72 10.28 34.24 2.29
3458 3521 6.677913 GGCAACAACAGAGTACAATTGTATT 58.322 36.000 20.72 16.82 34.24 1.89
3459 3522 6.582295 GGCAACAACAGAGTACAATTGTATTG 59.418 38.462 20.72 20.25 34.24 1.90
3460 3523 7.138736 GCAACAACAGAGTACAATTGTATTGT 58.861 34.615 20.72 20.82 34.24 2.71
3461 3524 7.113404 GCAACAACAGAGTACAATTGTATTGTG 59.887 37.037 26.59 26.59 37.47 3.33
3462 3525 7.801716 ACAACAGAGTACAATTGTATTGTGT 57.198 32.000 27.60 27.60 43.17 3.72
3463 3526 7.639039 ACAACAGAGTACAATTGTATTGTGTG 58.361 34.615 31.19 26.49 41.48 3.82
3464 3527 6.241207 ACAGAGTACAATTGTATTGTGTGC 57.759 37.500 30.47 14.71 41.04 4.57
3465 3528 5.762711 ACAGAGTACAATTGTATTGTGTGCA 59.237 36.000 30.47 5.61 41.04 4.57
3466 3529 6.262049 ACAGAGTACAATTGTATTGTGTGCAA 59.738 34.615 30.47 4.96 41.04 4.08
3467 3530 6.578545 CAGAGTACAATTGTATTGTGTGCAAC 59.421 38.462 22.55 10.27 37.44 4.17
3468 3531 5.448438 AGTACAATTGTATTGTGTGCAACG 58.552 37.500 20.72 0.00 37.44 4.10
3469 3532 4.560136 ACAATTGTATTGTGTGCAACGA 57.440 36.364 9.97 0.00 42.39 3.85
3470 3533 4.286910 ACAATTGTATTGTGTGCAACGAC 58.713 39.130 9.97 0.00 42.39 4.34
3471 3534 4.201960 ACAATTGTATTGTGTGCAACGACA 60.202 37.500 9.97 0.00 42.39 4.35
3472 3535 4.764679 ATTGTATTGTGTGCAACGACAT 57.235 36.364 0.00 0.00 42.39 3.06
3473 3536 3.804518 TGTATTGTGTGCAACGACATC 57.195 42.857 0.00 0.00 42.39 3.06
3474 3537 2.482336 TGTATTGTGTGCAACGACATCC 59.518 45.455 0.00 0.00 42.39 3.51
3475 3538 1.603456 ATTGTGTGCAACGACATCCA 58.397 45.000 0.00 0.00 42.39 3.41
3476 3539 1.383523 TTGTGTGCAACGACATCCAA 58.616 45.000 0.00 0.00 42.39 3.53
3477 3540 1.383523 TGTGTGCAACGACATCCAAA 58.616 45.000 0.00 0.00 42.39 3.28
3478 3541 1.745653 TGTGTGCAACGACATCCAAAA 59.254 42.857 0.00 0.00 42.39 2.44
3479 3542 2.360483 TGTGTGCAACGACATCCAAAAT 59.640 40.909 0.00 0.00 42.39 1.82
3480 3543 3.181482 TGTGTGCAACGACATCCAAAATT 60.181 39.130 0.00 0.00 42.39 1.82
3481 3544 4.036852 TGTGTGCAACGACATCCAAAATTA 59.963 37.500 0.00 0.00 42.39 1.40
3482 3545 4.616802 GTGTGCAACGACATCCAAAATTAG 59.383 41.667 0.00 0.00 42.39 1.73
3483 3546 4.277174 TGTGCAACGACATCCAAAATTAGT 59.723 37.500 0.00 0.00 42.39 2.24
3484 3547 5.219633 GTGCAACGACATCCAAAATTAGTT 58.780 37.500 0.00 0.00 0.00 2.24
3485 3548 6.017026 TGTGCAACGACATCCAAAATTAGTTA 60.017 34.615 0.00 0.00 42.39 2.24
3486 3549 6.523201 GTGCAACGACATCCAAAATTAGTTAG 59.477 38.462 0.00 0.00 0.00 2.34
3487 3550 5.511729 GCAACGACATCCAAAATTAGTTAGC 59.488 40.000 0.00 0.00 0.00 3.09
3488 3551 6.622896 GCAACGACATCCAAAATTAGTTAGCT 60.623 38.462 0.00 0.00 0.00 3.32
3489 3552 7.413657 GCAACGACATCCAAAATTAGTTAGCTA 60.414 37.037 0.00 0.00 0.00 3.32
3490 3553 8.447833 CAACGACATCCAAAATTAGTTAGCTAA 58.552 33.333 0.86 0.86 40.98 3.09
3491 3554 8.732746 ACGACATCCAAAATTAGTTAGCTAAT 57.267 30.769 9.88 6.05 46.62 1.73
3492 3555 9.826574 ACGACATCCAAAATTAGTTAGCTAATA 57.173 29.630 9.88 0.87 44.60 0.98
3522 3585 8.773645 GGTTTGAAAGAAACCAAATATTTCAGG 58.226 33.333 10.76 0.28 46.74 3.86
3523 3586 9.541143 GTTTGAAAGAAACCAAATATTTCAGGA 57.459 29.630 10.69 0.00 40.02 3.86
3524 3587 9.762933 TTTGAAAGAAACCAAATATTTCAGGAG 57.237 29.630 10.69 0.00 40.02 3.69
3525 3588 8.477419 TGAAAGAAACCAAATATTTCAGGAGT 57.523 30.769 10.69 0.00 38.32 3.85
3526 3589 8.359642 TGAAAGAAACCAAATATTTCAGGAGTG 58.640 33.333 10.69 0.00 38.32 3.51
3527 3590 7.839680 AAGAAACCAAATATTTCAGGAGTGT 57.160 32.000 10.69 0.00 38.32 3.55
3528 3591 7.219484 AGAAACCAAATATTTCAGGAGTGTG 57.781 36.000 10.69 0.00 38.32 3.82
3529 3592 6.777580 AGAAACCAAATATTTCAGGAGTGTGT 59.222 34.615 10.69 0.00 38.32 3.72
3530 3593 7.942341 AGAAACCAAATATTTCAGGAGTGTGTA 59.058 33.333 10.69 0.00 38.32 2.90
3531 3594 8.650143 AAACCAAATATTTCAGGAGTGTGTAT 57.350 30.769 10.69 0.00 0.00 2.29
3532 3595 7.865706 ACCAAATATTTCAGGAGTGTGTATC 57.134 36.000 10.69 0.00 0.00 2.24
3533 3596 6.828785 ACCAAATATTTCAGGAGTGTGTATCC 59.171 38.462 10.69 0.00 37.07 2.59
3534 3597 6.263168 CCAAATATTTCAGGAGTGTGTATCCC 59.737 42.308 0.00 0.00 37.57 3.85
3535 3598 6.575244 AATATTTCAGGAGTGTGTATCCCA 57.425 37.500 0.00 0.00 37.57 4.37
3536 3599 3.695830 TTTCAGGAGTGTGTATCCCAC 57.304 47.619 0.00 0.00 44.78 4.61
3547 3610 4.314740 GTGTATCCCACATCTCACTCTC 57.685 50.000 0.00 0.00 43.92 3.20
3548 3611 3.068873 GTGTATCCCACATCTCACTCTCC 59.931 52.174 0.00 0.00 43.92 3.71
3549 3612 2.864885 ATCCCACATCTCACTCTCCT 57.135 50.000 0.00 0.00 0.00 3.69
3550 3613 3.981516 ATCCCACATCTCACTCTCCTA 57.018 47.619 0.00 0.00 0.00 2.94
3551 3614 3.304911 TCCCACATCTCACTCTCCTAG 57.695 52.381 0.00 0.00 0.00 3.02
3552 3615 2.853077 TCCCACATCTCACTCTCCTAGA 59.147 50.000 0.00 0.00 0.00 2.43
3553 3616 3.269643 TCCCACATCTCACTCTCCTAGAA 59.730 47.826 0.00 0.00 0.00 2.10
3554 3617 4.026744 CCCACATCTCACTCTCCTAGAAA 58.973 47.826 0.00 0.00 0.00 2.52
3555 3618 4.467795 CCCACATCTCACTCTCCTAGAAAA 59.532 45.833 0.00 0.00 0.00 2.29
3556 3619 5.130145 CCCACATCTCACTCTCCTAGAAAAT 59.870 44.000 0.00 0.00 0.00 1.82
3557 3620 6.047870 CCACATCTCACTCTCCTAGAAAATG 58.952 44.000 0.00 0.00 0.00 2.32
3558 3621 6.127225 CCACATCTCACTCTCCTAGAAAATGA 60.127 42.308 0.00 0.00 0.00 2.57
3559 3622 6.979817 CACATCTCACTCTCCTAGAAAATGAG 59.020 42.308 0.00 0.00 33.47 2.90
3560 3623 5.590530 TCTCACTCTCCTAGAAAATGAGC 57.409 43.478 0.00 0.00 32.81 4.26
3561 3624 5.268387 TCTCACTCTCCTAGAAAATGAGCT 58.732 41.667 0.00 0.00 32.81 4.09
3562 3625 5.359576 TCTCACTCTCCTAGAAAATGAGCTC 59.640 44.000 6.82 6.82 32.81 4.09
3563 3626 5.019470 TCACTCTCCTAGAAAATGAGCTCA 58.981 41.667 20.79 20.79 0.00 4.26
3564 3627 5.105554 TCACTCTCCTAGAAAATGAGCTCAC 60.106 44.000 20.97 6.22 0.00 3.51
3565 3628 4.774726 ACTCTCCTAGAAAATGAGCTCACA 59.225 41.667 20.97 0.00 0.00 3.58
3566 3629 5.105392 ACTCTCCTAGAAAATGAGCTCACAG 60.105 44.000 20.97 9.13 0.00 3.66
3567 3630 5.019470 TCTCCTAGAAAATGAGCTCACAGA 58.981 41.667 20.97 6.35 0.00 3.41
3568 3631 5.481824 TCTCCTAGAAAATGAGCTCACAGAA 59.518 40.000 20.97 1.81 0.00 3.02
3569 3632 6.014242 TCTCCTAGAAAATGAGCTCACAGAAA 60.014 38.462 20.97 2.40 0.00 2.52
3570 3633 6.533730 TCCTAGAAAATGAGCTCACAGAAAA 58.466 36.000 20.97 2.95 0.00 2.29
3571 3634 6.998074 TCCTAGAAAATGAGCTCACAGAAAAA 59.002 34.615 20.97 1.35 0.00 1.94
3587 3650 1.864565 AAAAACAAGCGGCCATCAAC 58.135 45.000 2.24 0.00 0.00 3.18
3588 3651 1.039856 AAAACAAGCGGCCATCAACT 58.960 45.000 2.24 0.00 0.00 3.16
3589 3652 0.598065 AAACAAGCGGCCATCAACTC 59.402 50.000 2.24 0.00 0.00 3.01
3590 3653 0.537143 AACAAGCGGCCATCAACTCA 60.537 50.000 2.24 0.00 0.00 3.41
3591 3654 0.957395 ACAAGCGGCCATCAACTCAG 60.957 55.000 2.24 0.00 0.00 3.35
3592 3655 2.042831 AAGCGGCCATCAACTCAGC 61.043 57.895 2.24 0.00 0.00 4.26
3593 3656 3.869272 GCGGCCATCAACTCAGCG 61.869 66.667 2.24 0.00 0.00 5.18
3594 3657 2.125552 CGGCCATCAACTCAGCGA 60.126 61.111 2.24 0.00 0.00 4.93
3595 3658 1.741401 CGGCCATCAACTCAGCGAA 60.741 57.895 2.24 0.00 0.00 4.70
3596 3659 1.298157 CGGCCATCAACTCAGCGAAA 61.298 55.000 2.24 0.00 0.00 3.46
3597 3660 0.881118 GGCCATCAACTCAGCGAAAA 59.119 50.000 0.00 0.00 0.00 2.29
3598 3661 1.474077 GGCCATCAACTCAGCGAAAAT 59.526 47.619 0.00 0.00 0.00 1.82
3599 3662 2.682856 GGCCATCAACTCAGCGAAAATA 59.317 45.455 0.00 0.00 0.00 1.40
3600 3663 3.487544 GGCCATCAACTCAGCGAAAATAC 60.488 47.826 0.00 0.00 0.00 1.89
3601 3664 3.126858 GCCATCAACTCAGCGAAAATACA 59.873 43.478 0.00 0.00 0.00 2.29
3602 3665 4.379394 GCCATCAACTCAGCGAAAATACAA 60.379 41.667 0.00 0.00 0.00 2.41
3603 3666 5.677091 GCCATCAACTCAGCGAAAATACAAT 60.677 40.000 0.00 0.00 0.00 2.71
3604 3667 6.324819 CCATCAACTCAGCGAAAATACAATT 58.675 36.000 0.00 0.00 0.00 2.32
3605 3668 6.252015 CCATCAACTCAGCGAAAATACAATTG 59.748 38.462 3.24 3.24 0.00 2.32
3606 3669 6.552859 TCAACTCAGCGAAAATACAATTGA 57.447 33.333 13.59 0.00 0.00 2.57
3607 3670 7.144722 TCAACTCAGCGAAAATACAATTGAT 57.855 32.000 13.59 0.00 0.00 2.57
3608 3671 7.592938 TCAACTCAGCGAAAATACAATTGATT 58.407 30.769 13.59 4.97 0.00 2.57
3609 3672 8.081633 TCAACTCAGCGAAAATACAATTGATTT 58.918 29.630 13.59 10.63 0.00 2.17
3610 3673 7.801547 ACTCAGCGAAAATACAATTGATTTG 57.198 32.000 13.59 6.67 41.36 2.32
3611 3674 6.808212 ACTCAGCGAAAATACAATTGATTTGG 59.192 34.615 13.59 11.84 39.80 3.28
3612 3675 6.686630 TCAGCGAAAATACAATTGATTTGGT 58.313 32.000 13.59 8.02 39.80 3.67
3613 3676 7.151308 TCAGCGAAAATACAATTGATTTGGTT 58.849 30.769 13.59 6.98 39.80 3.67
3614 3677 7.328249 TCAGCGAAAATACAATTGATTTGGTTC 59.672 33.333 13.59 6.82 39.80 3.62
3615 3678 7.116090 CAGCGAAAATACAATTGATTTGGTTCA 59.884 33.333 13.59 0.00 39.80 3.18
3616 3679 7.655328 AGCGAAAATACAATTGATTTGGTTCAA 59.345 29.630 13.59 0.00 39.80 2.69
3617 3680 7.739911 GCGAAAATACAATTGATTTGGTTCAAC 59.260 33.333 13.59 0.49 38.37 3.18
3618 3681 8.759641 CGAAAATACAATTGATTTGGTTCAACA 58.240 29.630 13.59 0.00 38.37 3.33
3621 3684 5.964887 ACAATTGATTTGGTTCAACAACG 57.035 34.783 13.59 0.00 38.37 4.10
3622 3685 4.808364 ACAATTGATTTGGTTCAACAACGG 59.192 37.500 13.59 0.00 38.37 4.44
3623 3686 4.664150 ATTGATTTGGTTCAACAACGGT 57.336 36.364 0.00 0.00 38.37 4.83
3624 3687 5.776173 ATTGATTTGGTTCAACAACGGTA 57.224 34.783 0.00 0.00 38.37 4.02
3625 3688 5.578005 TTGATTTGGTTCAACAACGGTAA 57.422 34.783 0.00 0.00 32.68 2.85
3626 3689 5.176407 TGATTTGGTTCAACAACGGTAAG 57.824 39.130 0.00 0.00 32.68 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.725815 GGTTTGCAAGTCGCGTGC 60.726 61.111 12.75 12.75 46.97 5.34
54 55 3.206150 CCAATAGTCCCACCTTGATTCG 58.794 50.000 0.00 0.00 0.00 3.34
59 60 3.009695 TGTTACCCAATAGTCCCACCTTG 59.990 47.826 0.00 0.00 0.00 3.61
60 61 3.261962 TGTTACCCAATAGTCCCACCTT 58.738 45.455 0.00 0.00 0.00 3.50
85 86 6.235664 GGGTCTACCTATGTTTTGAAACAGA 58.764 40.000 13.91 9.13 43.34 3.41
151 152 6.095377 GGGCTCATGTGAAGTTCAAATTAAG 58.905 40.000 7.25 8.68 0.00 1.85
153 154 5.076182 TGGGCTCATGTGAAGTTCAAATTA 58.924 37.500 7.25 0.00 0.00 1.40
155 156 3.499338 TGGGCTCATGTGAAGTTCAAAT 58.501 40.909 7.25 4.69 0.00 2.32
158 159 2.655090 TTGGGCTCATGTGAAGTTCA 57.345 45.000 0.08 0.08 0.00 3.18
169 170 6.603940 AGCAACTAAAAATATTTGGGCTCA 57.396 33.333 0.39 0.00 31.78 4.26
258 259 1.001158 CGCCGCCTAGTTTTCCAAAAA 60.001 47.619 0.00 0.00 0.00 1.94
259 260 0.594110 CGCCGCCTAGTTTTCCAAAA 59.406 50.000 0.00 0.00 0.00 2.44
260 261 0.250381 TCGCCGCCTAGTTTTCCAAA 60.250 50.000 0.00 0.00 0.00 3.28
261 262 0.952010 GTCGCCGCCTAGTTTTCCAA 60.952 55.000 0.00 0.00 0.00 3.53
265 266 2.046604 GGGTCGCCGCCTAGTTTT 60.047 61.111 0.00 0.00 0.00 2.43
279 280 3.714798 TCCTGTAGTTTCTTGTTCTGGGT 59.285 43.478 0.00 0.00 0.00 4.51
281 282 5.997746 TCAATCCTGTAGTTTCTTGTTCTGG 59.002 40.000 0.00 0.00 0.00 3.86
338 339 9.755122 ATCAGTCAATCAATCCAATCATCATAT 57.245 29.630 0.00 0.00 0.00 1.78
339 340 9.582648 AATCAGTCAATCAATCCAATCATCATA 57.417 29.630 0.00 0.00 0.00 2.15
380 381 0.108520 GCGTTCTTGGTCCGTCCATA 60.109 55.000 0.00 0.00 46.60 2.74
385 386 0.745128 TTTGTGCGTTCTTGGTCCGT 60.745 50.000 0.00 0.00 0.00 4.69
462 463 9.689976 CATGATGTTGTTTATACAAAAAGTGGA 57.310 29.630 0.00 0.00 45.33 4.02
547 550 2.331805 CATACCTCGGTCCGCTCG 59.668 66.667 6.34 0.00 0.00 5.03
616 619 8.621532 TGAGAAGTGCTAAACTCATTTATGTT 57.378 30.769 0.00 0.00 38.56 2.71
639 642 2.972713 AGGCAGTAGACCAAGAACTTGA 59.027 45.455 14.99 0.00 42.93 3.02
656 659 9.781834 CATTAATTCGTTAATTAACTCAAGGCA 57.218 29.630 22.57 5.40 45.62 4.75
657 660 9.997482 TCATTAATTCGTTAATTAACTCAAGGC 57.003 29.630 22.57 0.00 45.62 4.35
956 959 2.420687 GGTGATGGATGGAAGAGACCAC 60.421 54.545 0.00 0.00 43.03 4.16
1065 1068 2.814919 GACGAGACAGGAGAAGAAGACA 59.185 50.000 0.00 0.00 0.00 3.41
1101 1104 1.746470 TGTCGTAGCCGAAGATGAGA 58.254 50.000 0.00 0.00 46.26 3.27
1182 1185 6.239120 CCACAAAATTTTCACTCTCTCATGGT 60.239 38.462 0.00 0.00 0.00 3.55
1184 1187 6.973843 TCCACAAAATTTTCACTCTCTCATG 58.026 36.000 0.00 0.00 0.00 3.07
1282 1285 1.494960 TTTCCTTGTTTGCCTTGGCT 58.505 45.000 13.18 0.00 0.00 4.75
1801 1840 1.973812 GACCAGCACCTTCTTGGCC 60.974 63.158 0.00 0.00 40.22 5.36
1825 1864 0.682209 GCACGTCTGAGGTACCCCTA 60.682 60.000 8.74 0.00 42.86 3.53
1831 1870 1.577922 GTCGTGCACGTCTGAGGTA 59.422 57.895 35.74 13.93 40.80 3.08
1849 1888 1.840181 CCACCATGTCGTCATACTCG 58.160 55.000 0.00 0.00 32.47 4.18
1951 1993 0.750911 GGAAGCAGGGGATGAGCAAG 60.751 60.000 0.00 0.00 0.00 4.01
1952 1994 1.304282 GGAAGCAGGGGATGAGCAA 59.696 57.895 0.00 0.00 0.00 3.91
2194 2236 1.153549 GCCGAACTGGAGAGCGATT 60.154 57.895 0.00 0.00 42.00 3.34
2240 2282 1.149854 CCAGCAGCATGGCATAGGA 59.850 57.895 0.00 0.00 35.86 2.94
2323 2365 4.043200 GCAAACACCTCGCTGGGC 62.043 66.667 0.00 0.00 41.11 5.36
2338 2380 1.153765 CGACCTGATCTCAAGCGCA 60.154 57.895 11.47 0.00 0.00 6.09
2344 2386 2.060383 CCCTGCCGACCTGATCTCA 61.060 63.158 0.00 0.00 0.00 3.27
2633 2675 4.210120 CGCTCGCTAAATGAAAAGCTAGAT 59.790 41.667 0.00 0.00 34.39 1.98
2644 2686 2.233355 CACAAACACGCTCGCTAAATG 58.767 47.619 0.00 0.00 0.00 2.32
2681 2724 5.127519 TGATCTGCCAAAATTCTTATGGTGG 59.872 40.000 0.00 0.00 36.57 4.61
2736 2779 6.252228 CGACGGTAGTAAAGATGTCCTAAAAC 59.748 42.308 0.00 0.00 0.00 2.43
2737 2780 6.324819 CGACGGTAGTAAAGATGTCCTAAAA 58.675 40.000 0.00 0.00 0.00 1.52
2738 2781 5.163622 CCGACGGTAGTAAAGATGTCCTAAA 60.164 44.000 5.48 0.00 0.00 1.85
2739 2782 4.336433 CCGACGGTAGTAAAGATGTCCTAA 59.664 45.833 5.48 0.00 0.00 2.69
2740 2783 3.879295 CCGACGGTAGTAAAGATGTCCTA 59.121 47.826 5.48 0.00 0.00 2.94
2741 2784 2.686915 CCGACGGTAGTAAAGATGTCCT 59.313 50.000 5.48 0.00 0.00 3.85
2742 2785 2.684881 TCCGACGGTAGTAAAGATGTCC 59.315 50.000 14.79 0.00 0.00 4.02
2743 2786 4.564940 ATCCGACGGTAGTAAAGATGTC 57.435 45.455 14.79 0.00 0.00 3.06
2744 2787 4.996788 AATCCGACGGTAGTAAAGATGT 57.003 40.909 14.79 0.00 0.00 3.06
2745 2788 7.760131 TTAAAATCCGACGGTAGTAAAGATG 57.240 36.000 14.79 0.00 0.00 2.90
2746 2789 8.953368 AATTAAAATCCGACGGTAGTAAAGAT 57.047 30.769 14.79 0.00 0.00 2.40
2747 2790 8.034215 TGAATTAAAATCCGACGGTAGTAAAGA 58.966 33.333 14.79 0.00 0.00 2.52
2748 2791 8.188531 TGAATTAAAATCCGACGGTAGTAAAG 57.811 34.615 14.79 0.00 0.00 1.85
2749 2792 8.721019 ATGAATTAAAATCCGACGGTAGTAAA 57.279 30.769 14.79 5.08 0.00 2.01
2750 2793 9.814899 TTATGAATTAAAATCCGACGGTAGTAA 57.185 29.630 14.79 8.83 0.00 2.24
2751 2794 9.467258 CTTATGAATTAAAATCCGACGGTAGTA 57.533 33.333 14.79 0.00 0.00 1.82
2752 2795 7.983484 ACTTATGAATTAAAATCCGACGGTAGT 59.017 33.333 14.79 0.00 0.00 2.73
2753 2796 8.361592 ACTTATGAATTAAAATCCGACGGTAG 57.638 34.615 14.79 0.00 0.00 3.18
2754 2797 8.721019 AACTTATGAATTAAAATCCGACGGTA 57.279 30.769 14.79 0.72 0.00 4.02
2755 2798 7.619964 AACTTATGAATTAAAATCCGACGGT 57.380 32.000 14.79 0.00 0.00 4.83
2756 2799 8.905103 AAAACTTATGAATTAAAATCCGACGG 57.095 30.769 7.84 7.84 0.00 4.79
2845 2888 6.814343 TCTTTAGAACGTGAAATCGCTAAAC 58.186 36.000 0.00 0.00 29.66 2.01
2851 2894 8.488979 ACATTTTTCTTTAGAACGTGAAATCG 57.511 30.769 0.00 0.00 33.13 3.34
2958 3001 5.708948 CTGAGGTCTTGAGTTCAACTCTAG 58.291 45.833 19.60 19.60 45.27 2.43
2997 3040 0.824109 CTCAGCCCAGATGGTTCGTA 59.176 55.000 0.00 0.00 36.04 3.43
3062 3105 5.527214 AGTGAAGATCATTTGACGTTCAACA 59.473 36.000 0.00 0.00 35.89 3.33
3064 3107 5.757808 TCAGTGAAGATCATTTGACGTTCAA 59.242 36.000 0.00 0.00 33.50 2.69
3111 3154 7.334421 GCATGATAAGTTAACTCTGGTTCTTCA 59.666 37.037 8.95 4.34 36.92 3.02
3120 3163 5.102953 TGCAGGCATGATAAGTTAACTCT 57.897 39.130 8.95 0.00 0.00 3.24
3174 3234 3.904717 TGTTCAAACACACCCTGGTTAT 58.095 40.909 0.00 0.00 33.17 1.89
3176 3236 2.223803 TGTTCAAACACACCCTGGTT 57.776 45.000 0.00 0.00 33.17 3.67
3202 3265 6.656902 ACACCATGACAACTATGATCAAGAT 58.343 36.000 0.00 0.00 0.00 2.40
3206 3269 5.559770 ACAACACCATGACAACTATGATCA 58.440 37.500 0.00 0.00 0.00 2.92
3212 3275 4.325028 ACGTACAACACCATGACAACTA 57.675 40.909 0.00 0.00 0.00 2.24
3217 3280 6.976349 TCATATCTTACGTACAACACCATGAC 59.024 38.462 0.00 0.00 0.00 3.06
3221 3284 6.869695 ACATCATATCTTACGTACAACACCA 58.130 36.000 0.00 0.00 0.00 4.17
3237 3300 7.764443 GGTAATTATGTGCCGTAGACATCATAT 59.236 37.037 0.00 0.00 35.62 1.78
3241 3304 5.294356 TGGTAATTATGTGCCGTAGACATC 58.706 41.667 0.00 0.00 35.62 3.06
3253 3316 9.381038 ACTGGTCATCTAGTATGGTAATTATGT 57.619 33.333 0.00 0.00 33.69 2.29
3267 3330 0.108186 TGGCGCAACTGGTCATCTAG 60.108 55.000 10.83 0.00 0.00 2.43
3270 3333 0.527565 ATTTGGCGCAACTGGTCATC 59.472 50.000 10.83 0.00 0.00 2.92
3271 3334 0.244450 CATTTGGCGCAACTGGTCAT 59.756 50.000 10.83 0.00 0.00 3.06
3272 3335 1.659233 CATTTGGCGCAACTGGTCA 59.341 52.632 10.83 0.00 0.00 4.02
3273 3336 1.080569 CCATTTGGCGCAACTGGTC 60.081 57.895 10.83 0.00 38.71 4.02
3274 3337 3.050339 CCATTTGGCGCAACTGGT 58.950 55.556 10.83 0.00 38.71 4.00
3284 3347 0.107703 TAGGTCTCTGCGCCATTTGG 60.108 55.000 4.18 0.00 38.53 3.28
3285 3348 1.959042 ATAGGTCTCTGCGCCATTTG 58.041 50.000 4.18 0.00 0.00 2.32
3286 3349 2.717639 AATAGGTCTCTGCGCCATTT 57.282 45.000 4.18 0.00 0.00 2.32
3287 3350 2.717639 AAATAGGTCTCTGCGCCATT 57.282 45.000 4.18 0.00 0.00 3.16
3288 3351 3.838244 TTAAATAGGTCTCTGCGCCAT 57.162 42.857 4.18 0.00 0.00 4.40
3289 3352 3.620427 TTTAAATAGGTCTCTGCGCCA 57.380 42.857 4.18 0.00 0.00 5.69
3290 3353 3.064958 GGTTTTAAATAGGTCTCTGCGCC 59.935 47.826 4.18 0.00 0.00 6.53
3291 3354 3.687698 TGGTTTTAAATAGGTCTCTGCGC 59.312 43.478 0.00 0.00 0.00 6.09
3292 3355 5.354234 ACATGGTTTTAAATAGGTCTCTGCG 59.646 40.000 0.00 0.00 0.00 5.18
3293 3356 6.555315 CACATGGTTTTAAATAGGTCTCTGC 58.445 40.000 0.00 0.00 0.00 4.26
3294 3357 6.375455 AGCACATGGTTTTAAATAGGTCTCTG 59.625 38.462 0.00 0.00 0.00 3.35
3295 3358 6.485171 AGCACATGGTTTTAAATAGGTCTCT 58.515 36.000 0.00 0.00 0.00 3.10
3296 3359 6.374333 TGAGCACATGGTTTTAAATAGGTCTC 59.626 38.462 0.00 0.00 0.00 3.36
3297 3360 6.245408 TGAGCACATGGTTTTAAATAGGTCT 58.755 36.000 0.00 0.00 0.00 3.85
3298 3361 6.509418 TGAGCACATGGTTTTAAATAGGTC 57.491 37.500 0.00 0.00 0.00 3.85
3299 3362 7.178274 TCAATGAGCACATGGTTTTAAATAGGT 59.822 33.333 0.00 0.00 36.79 3.08
3300 3363 7.546358 TCAATGAGCACATGGTTTTAAATAGG 58.454 34.615 0.00 0.00 36.79 2.57
3301 3364 8.984891 TTCAATGAGCACATGGTTTTAAATAG 57.015 30.769 0.00 0.00 36.79 1.73
3302 3365 9.941325 ATTTCAATGAGCACATGGTTTTAAATA 57.059 25.926 0.00 0.00 36.79 1.40
3303 3366 8.851541 ATTTCAATGAGCACATGGTTTTAAAT 57.148 26.923 0.00 0.00 36.79 1.40
3304 3367 8.674263 AATTTCAATGAGCACATGGTTTTAAA 57.326 26.923 0.00 0.00 36.79 1.52
3305 3368 9.941325 ATAATTTCAATGAGCACATGGTTTTAA 57.059 25.926 0.00 0.00 36.79 1.52
3306 3369 9.941325 AATAATTTCAATGAGCACATGGTTTTA 57.059 25.926 0.00 0.00 36.79 1.52
3307 3370 8.851541 AATAATTTCAATGAGCACATGGTTTT 57.148 26.923 0.00 0.00 36.79 2.43
3308 3371 8.723311 CAAATAATTTCAATGAGCACATGGTTT 58.277 29.630 0.00 0.00 36.79 3.27
3309 3372 7.148373 GCAAATAATTTCAATGAGCACATGGTT 60.148 33.333 0.00 0.00 36.79 3.67
3310 3373 6.314400 GCAAATAATTTCAATGAGCACATGGT 59.686 34.615 0.00 0.00 36.79 3.55
3311 3374 6.314152 TGCAAATAATTTCAATGAGCACATGG 59.686 34.615 0.00 0.00 36.79 3.66
3312 3375 7.297229 TGCAAATAATTTCAATGAGCACATG 57.703 32.000 0.00 0.00 36.79 3.21
3313 3376 8.500753 AATGCAAATAATTTCAATGAGCACAT 57.499 26.923 0.00 0.00 38.50 3.21
3314 3377 7.908827 AATGCAAATAATTTCAATGAGCACA 57.091 28.000 0.00 0.00 31.79 4.57
3315 3378 9.615295 AAAAATGCAAATAATTTCAATGAGCAC 57.385 25.926 0.00 0.00 31.79 4.40
3347 3410 9.357161 TCTTAACATATACCCAAACACAAAGTT 57.643 29.630 0.00 0.00 43.89 2.66
3348 3411 8.927675 TCTTAACATATACCCAAACACAAAGT 57.072 30.769 0.00 0.00 0.00 2.66
3349 3412 9.620660 GTTCTTAACATATACCCAAACACAAAG 57.379 33.333 0.00 0.00 0.00 2.77
3350 3413 9.357161 AGTTCTTAACATATACCCAAACACAAA 57.643 29.630 0.00 0.00 0.00 2.83
3351 3414 8.927675 AGTTCTTAACATATACCCAAACACAA 57.072 30.769 0.00 0.00 0.00 3.33
3352 3415 8.788806 CAAGTTCTTAACATATACCCAAACACA 58.211 33.333 0.00 0.00 0.00 3.72
3353 3416 8.241367 CCAAGTTCTTAACATATACCCAAACAC 58.759 37.037 0.00 0.00 0.00 3.32
3354 3417 7.094118 GCCAAGTTCTTAACATATACCCAAACA 60.094 37.037 0.00 0.00 0.00 2.83
3355 3418 7.255569 GCCAAGTTCTTAACATATACCCAAAC 58.744 38.462 0.00 0.00 0.00 2.93
3356 3419 6.378848 GGCCAAGTTCTTAACATATACCCAAA 59.621 38.462 0.00 0.00 0.00 3.28
3357 3420 5.889289 GGCCAAGTTCTTAACATATACCCAA 59.111 40.000 0.00 0.00 0.00 4.12
3358 3421 5.192923 AGGCCAAGTTCTTAACATATACCCA 59.807 40.000 5.01 0.00 0.00 4.51
3359 3422 5.691896 AGGCCAAGTTCTTAACATATACCC 58.308 41.667 5.01 0.00 0.00 3.69
3360 3423 7.640597 AAAGGCCAAGTTCTTAACATATACC 57.359 36.000 5.01 0.00 0.00 2.73
3361 3424 8.520351 ACAAAAGGCCAAGTTCTTAACATATAC 58.480 33.333 5.01 0.00 0.00 1.47
3362 3425 8.644374 ACAAAAGGCCAAGTTCTTAACATATA 57.356 30.769 5.01 0.00 0.00 0.86
3363 3426 7.539034 ACAAAAGGCCAAGTTCTTAACATAT 57.461 32.000 5.01 0.00 0.00 1.78
3364 3427 6.969993 ACAAAAGGCCAAGTTCTTAACATA 57.030 33.333 5.01 0.00 0.00 2.29
3365 3428 5.869649 ACAAAAGGCCAAGTTCTTAACAT 57.130 34.783 5.01 0.00 0.00 2.71
3366 3429 6.969993 ATACAAAAGGCCAAGTTCTTAACA 57.030 33.333 5.01 0.00 0.00 2.41
3367 3430 9.752961 TTTTATACAAAAGGCCAAGTTCTTAAC 57.247 29.630 5.01 0.00 0.00 2.01
3368 3431 9.974980 CTTTTATACAAAAGGCCAAGTTCTTAA 57.025 29.630 5.01 0.00 44.61 1.85
3385 3448 9.502091 AGCTCTGTACAATCAAACTTTTATACA 57.498 29.630 0.00 0.00 0.00 2.29
3389 3452 8.504005 GCTTAGCTCTGTACAATCAAACTTTTA 58.496 33.333 0.00 0.00 0.00 1.52
3390 3453 7.229506 AGCTTAGCTCTGTACAATCAAACTTTT 59.770 33.333 0.00 0.00 30.62 2.27
3391 3454 6.712547 AGCTTAGCTCTGTACAATCAAACTTT 59.287 34.615 0.00 0.00 30.62 2.66
3392 3455 6.234177 AGCTTAGCTCTGTACAATCAAACTT 58.766 36.000 0.00 0.00 30.62 2.66
3393 3456 5.799213 AGCTTAGCTCTGTACAATCAAACT 58.201 37.500 0.00 0.00 30.62 2.66
3408 3471 6.456501 TCTTTCTTTTTACGAGAGCTTAGCT 58.543 36.000 6.37 6.37 43.88 3.32
3409 3472 6.707599 TCTTTCTTTTTACGAGAGCTTAGC 57.292 37.500 0.00 0.00 0.00 3.09
3410 3473 7.675170 GCCATCTTTCTTTTTACGAGAGCTTAG 60.675 40.741 0.00 0.00 0.00 2.18
3411 3474 6.092259 GCCATCTTTCTTTTTACGAGAGCTTA 59.908 38.462 0.00 0.00 0.00 3.09
3412 3475 5.106515 GCCATCTTTCTTTTTACGAGAGCTT 60.107 40.000 0.00 0.00 0.00 3.74
3413 3476 4.393371 GCCATCTTTCTTTTTACGAGAGCT 59.607 41.667 0.00 0.00 0.00 4.09
3414 3477 4.154195 TGCCATCTTTCTTTTTACGAGAGC 59.846 41.667 0.00 0.00 0.00 4.09
3415 3478 5.862924 TGCCATCTTTCTTTTTACGAGAG 57.137 39.130 0.00 0.00 0.00 3.20
3416 3479 5.529430 TGTTGCCATCTTTCTTTTTACGAGA 59.471 36.000 0.00 0.00 0.00 4.04
3417 3480 5.757886 TGTTGCCATCTTTCTTTTTACGAG 58.242 37.500 0.00 0.00 0.00 4.18
3418 3481 5.759506 TGTTGCCATCTTTCTTTTTACGA 57.240 34.783 0.00 0.00 0.00 3.43
3419 3482 5.746245 TGTTGTTGCCATCTTTCTTTTTACG 59.254 36.000 0.00 0.00 0.00 3.18
3420 3483 6.978080 TCTGTTGTTGCCATCTTTCTTTTTAC 59.022 34.615 0.00 0.00 0.00 2.01
3421 3484 7.106439 TCTGTTGTTGCCATCTTTCTTTTTA 57.894 32.000 0.00 0.00 0.00 1.52
3422 3485 5.976458 TCTGTTGTTGCCATCTTTCTTTTT 58.024 33.333 0.00 0.00 0.00 1.94
3423 3486 5.127682 ACTCTGTTGTTGCCATCTTTCTTTT 59.872 36.000 0.00 0.00 0.00 2.27
3424 3487 4.646492 ACTCTGTTGTTGCCATCTTTCTTT 59.354 37.500 0.00 0.00 0.00 2.52
3425 3488 4.210331 ACTCTGTTGTTGCCATCTTTCTT 58.790 39.130 0.00 0.00 0.00 2.52
3426 3489 3.825328 ACTCTGTTGTTGCCATCTTTCT 58.175 40.909 0.00 0.00 0.00 2.52
3427 3490 4.515191 TGTACTCTGTTGTTGCCATCTTTC 59.485 41.667 0.00 0.00 0.00 2.62
3428 3491 4.460263 TGTACTCTGTTGTTGCCATCTTT 58.540 39.130 0.00 0.00 0.00 2.52
3429 3492 4.085357 TGTACTCTGTTGTTGCCATCTT 57.915 40.909 0.00 0.00 0.00 2.40
3430 3493 3.769739 TGTACTCTGTTGTTGCCATCT 57.230 42.857 0.00 0.00 0.00 2.90
3431 3494 5.156355 CAATTGTACTCTGTTGTTGCCATC 58.844 41.667 0.00 0.00 0.00 3.51
3432 3495 4.584325 ACAATTGTACTCTGTTGTTGCCAT 59.416 37.500 9.97 0.00 31.20 4.40
3433 3496 3.951037 ACAATTGTACTCTGTTGTTGCCA 59.049 39.130 9.97 0.00 31.20 4.92
3434 3497 4.568152 ACAATTGTACTCTGTTGTTGCC 57.432 40.909 9.97 0.00 31.20 4.52
3435 3498 7.113404 CACAATACAATTGTACTCTGTTGTTGC 59.887 37.037 22.78 0.00 36.34 4.17
3436 3499 8.128582 ACACAATACAATTGTACTCTGTTGTTG 58.871 33.333 22.78 19.82 36.34 3.33
3437 3500 8.128582 CACACAATACAATTGTACTCTGTTGTT 58.871 33.333 22.78 15.25 36.34 2.83
3438 3501 7.639039 CACACAATACAATTGTACTCTGTTGT 58.361 34.615 20.26 20.64 38.28 3.32
3439 3502 6.578545 GCACACAATACAATTGTACTCTGTTG 59.421 38.462 20.26 20.07 32.72 3.33
3440 3503 6.262049 TGCACACAATACAATTGTACTCTGTT 59.738 34.615 20.26 7.90 32.72 3.16
3441 3504 5.762711 TGCACACAATACAATTGTACTCTGT 59.237 36.000 20.26 18.74 32.72 3.41
3442 3505 6.239908 TGCACACAATACAATTGTACTCTG 57.760 37.500 20.26 18.17 32.72 3.35
3443 3506 6.565811 CGTTGCACACAATACAATTGTACTCT 60.566 38.462 20.26 5.74 38.27 3.24
3444 3507 5.563751 CGTTGCACACAATACAATTGTACTC 59.436 40.000 20.26 0.00 38.27 2.59
3445 3508 5.237561 TCGTTGCACACAATACAATTGTACT 59.762 36.000 20.26 7.14 38.27 2.73
3446 3509 5.338559 GTCGTTGCACACAATACAATTGTAC 59.661 40.000 20.26 6.79 38.27 2.90
3447 3510 5.007724 TGTCGTTGCACACAATACAATTGTA 59.992 36.000 20.14 20.14 38.27 2.41
3448 3511 4.201960 TGTCGTTGCACACAATACAATTGT 60.202 37.500 16.68 16.68 38.27 2.71
3449 3512 4.286101 TGTCGTTGCACACAATACAATTG 58.714 39.130 3.24 3.24 38.27 2.32
3450 3513 4.560136 TGTCGTTGCACACAATACAATT 57.440 36.364 0.00 0.00 38.27 2.32
3451 3514 4.379394 GGATGTCGTTGCACACAATACAAT 60.379 41.667 0.00 0.00 37.77 2.71
3452 3515 3.058570 GGATGTCGTTGCACACAATACAA 60.059 43.478 0.00 0.00 37.77 2.41
3453 3516 2.482336 GGATGTCGTTGCACACAATACA 59.518 45.455 0.00 0.00 38.27 2.29
3454 3517 2.482336 TGGATGTCGTTGCACACAATAC 59.518 45.455 0.00 0.00 38.27 1.89
3455 3518 2.772287 TGGATGTCGTTGCACACAATA 58.228 42.857 0.00 0.00 38.27 1.90
3456 3519 1.603456 TGGATGTCGTTGCACACAAT 58.397 45.000 0.00 0.00 38.27 2.71
3457 3520 1.383523 TTGGATGTCGTTGCACACAA 58.616 45.000 0.00 0.00 0.00 3.33
3458 3521 1.383523 TTTGGATGTCGTTGCACACA 58.616 45.000 0.00 0.00 0.00 3.72
3459 3522 2.483583 TTTTGGATGTCGTTGCACAC 57.516 45.000 0.00 0.00 0.00 3.82
3460 3523 3.724508 AATTTTGGATGTCGTTGCACA 57.275 38.095 0.00 0.00 0.00 4.57
3461 3524 4.794169 ACTAATTTTGGATGTCGTTGCAC 58.206 39.130 0.00 0.00 0.00 4.57
3462 3525 5.446143 AACTAATTTTGGATGTCGTTGCA 57.554 34.783 0.00 0.00 0.00 4.08
3463 3526 5.511729 GCTAACTAATTTTGGATGTCGTTGC 59.488 40.000 0.00 0.00 0.00 4.17
3464 3527 6.842163 AGCTAACTAATTTTGGATGTCGTTG 58.158 36.000 0.00 0.00 0.00 4.10
3465 3528 8.556213 TTAGCTAACTAATTTTGGATGTCGTT 57.444 30.769 0.86 0.00 33.35 3.85
3466 3529 8.732746 ATTAGCTAACTAATTTTGGATGTCGT 57.267 30.769 8.70 0.00 44.98 4.34
3497 3560 9.541143 TCCTGAAATATTTGGTTTCTTTCAAAC 57.459 29.630 5.17 0.00 35.93 2.93
3498 3561 9.762933 CTCCTGAAATATTTGGTTTCTTTCAAA 57.237 29.630 5.17 0.00 35.93 2.69
3499 3562 8.923270 ACTCCTGAAATATTTGGTTTCTTTCAA 58.077 29.630 5.17 0.00 35.93 2.69
3500 3563 8.359642 CACTCCTGAAATATTTGGTTTCTTTCA 58.640 33.333 5.17 0.00 36.71 2.69
3501 3564 8.360390 ACACTCCTGAAATATTTGGTTTCTTTC 58.640 33.333 5.17 0.00 36.71 2.62
3502 3565 8.143835 CACACTCCTGAAATATTTGGTTTCTTT 58.856 33.333 5.17 0.00 36.71 2.52
3503 3566 7.287696 ACACACTCCTGAAATATTTGGTTTCTT 59.712 33.333 5.17 0.00 36.71 2.52
3504 3567 6.777580 ACACACTCCTGAAATATTTGGTTTCT 59.222 34.615 5.17 0.00 36.71 2.52
3505 3568 6.981722 ACACACTCCTGAAATATTTGGTTTC 58.018 36.000 5.17 0.00 36.39 2.78
3506 3569 6.976934 ACACACTCCTGAAATATTTGGTTT 57.023 33.333 5.17 0.00 0.00 3.27
3507 3570 7.339466 GGATACACACTCCTGAAATATTTGGTT 59.661 37.037 5.17 0.00 0.00 3.67
3508 3571 6.828785 GGATACACACTCCTGAAATATTTGGT 59.171 38.462 5.17 0.00 0.00 3.67
3509 3572 6.263168 GGGATACACACTCCTGAAATATTTGG 59.737 42.308 5.17 1.71 39.74 3.28
3510 3573 6.828273 TGGGATACACACTCCTGAAATATTTG 59.172 38.462 5.17 0.00 39.74 2.32
3511 3574 6.969043 TGGGATACACACTCCTGAAATATTT 58.031 36.000 0.00 0.00 39.74 1.40
3512 3575 6.575244 TGGGATACACACTCCTGAAATATT 57.425 37.500 0.00 0.00 39.74 1.28
3527 3590 3.052566 AGGAGAGTGAGATGTGGGATACA 60.053 47.826 0.00 0.00 44.87 2.29
3528 3591 3.571590 AGGAGAGTGAGATGTGGGATAC 58.428 50.000 0.00 0.00 0.00 2.24
3529 3592 3.981516 AGGAGAGTGAGATGTGGGATA 57.018 47.619 0.00 0.00 0.00 2.59
3530 3593 2.864885 AGGAGAGTGAGATGTGGGAT 57.135 50.000 0.00 0.00 0.00 3.85
3531 3594 2.853077 TCTAGGAGAGTGAGATGTGGGA 59.147 50.000 0.00 0.00 0.00 4.37
3532 3595 3.304911 TCTAGGAGAGTGAGATGTGGG 57.695 52.381 0.00 0.00 0.00 4.61
3533 3596 5.667539 TTTTCTAGGAGAGTGAGATGTGG 57.332 43.478 0.00 0.00 0.00 4.17
3534 3597 6.871844 TCATTTTCTAGGAGAGTGAGATGTG 58.128 40.000 0.00 0.00 0.00 3.21
3535 3598 6.406849 GCTCATTTTCTAGGAGAGTGAGATGT 60.407 42.308 12.31 0.00 34.68 3.06
3536 3599 5.984926 GCTCATTTTCTAGGAGAGTGAGATG 59.015 44.000 12.31 0.00 34.68 2.90
3537 3600 5.898972 AGCTCATTTTCTAGGAGAGTGAGAT 59.101 40.000 12.31 5.52 34.68 2.75
3538 3601 5.268387 AGCTCATTTTCTAGGAGAGTGAGA 58.732 41.667 12.31 0.00 34.68 3.27
3539 3602 5.126869 TGAGCTCATTTTCTAGGAGAGTGAG 59.873 44.000 13.74 6.33 35.27 3.51
3540 3603 5.019470 TGAGCTCATTTTCTAGGAGAGTGA 58.981 41.667 13.74 0.00 0.00 3.41
3541 3604 5.108517 GTGAGCTCATTTTCTAGGAGAGTG 58.891 45.833 21.47 0.00 0.00 3.51
3542 3605 4.774726 TGTGAGCTCATTTTCTAGGAGAGT 59.225 41.667 21.47 0.00 0.00 3.24
3543 3606 5.126869 TCTGTGAGCTCATTTTCTAGGAGAG 59.873 44.000 21.47 0.24 0.00 3.20
3544 3607 5.019470 TCTGTGAGCTCATTTTCTAGGAGA 58.981 41.667 21.47 7.35 0.00 3.71
3545 3608 5.336150 TCTGTGAGCTCATTTTCTAGGAG 57.664 43.478 21.47 5.23 0.00 3.69
3546 3609 5.745312 TTCTGTGAGCTCATTTTCTAGGA 57.255 39.130 21.47 6.73 0.00 2.94
3547 3610 6.808008 TTTTCTGTGAGCTCATTTTCTAGG 57.192 37.500 21.47 4.54 0.00 3.02
3568 3631 1.412343 AGTTGATGGCCGCTTGTTTTT 59.588 42.857 0.00 0.00 0.00 1.94
3569 3632 1.000274 GAGTTGATGGCCGCTTGTTTT 60.000 47.619 0.00 0.00 0.00 2.43
3570 3633 0.598065 GAGTTGATGGCCGCTTGTTT 59.402 50.000 0.00 0.00 0.00 2.83
3571 3634 0.537143 TGAGTTGATGGCCGCTTGTT 60.537 50.000 0.00 0.00 0.00 2.83
3572 3635 0.957395 CTGAGTTGATGGCCGCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
3573 3636 1.798735 CTGAGTTGATGGCCGCTTG 59.201 57.895 0.00 0.00 0.00 4.01
3574 3637 2.042831 GCTGAGTTGATGGCCGCTT 61.043 57.895 0.00 0.00 0.00 4.68
3575 3638 2.437359 GCTGAGTTGATGGCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
3576 3639 3.869272 CGCTGAGTTGATGGCCGC 61.869 66.667 0.00 0.00 0.00 6.53
3577 3640 1.298157 TTTCGCTGAGTTGATGGCCG 61.298 55.000 0.00 0.00 0.00 6.13
3578 3641 0.881118 TTTTCGCTGAGTTGATGGCC 59.119 50.000 0.00 0.00 0.00 5.36
3579 3642 2.927553 ATTTTCGCTGAGTTGATGGC 57.072 45.000 0.00 0.00 0.00 4.40
3580 3643 4.944962 TGTATTTTCGCTGAGTTGATGG 57.055 40.909 0.00 0.00 0.00 3.51
3581 3644 7.022979 TCAATTGTATTTTCGCTGAGTTGATG 58.977 34.615 5.13 0.00 0.00 3.07
3582 3645 7.144722 TCAATTGTATTTTCGCTGAGTTGAT 57.855 32.000 5.13 0.00 0.00 2.57
3583 3646 6.552859 TCAATTGTATTTTCGCTGAGTTGA 57.447 33.333 5.13 0.00 0.00 3.18
3584 3647 7.801547 AATCAATTGTATTTTCGCTGAGTTG 57.198 32.000 5.13 0.00 0.00 3.16
3585 3648 7.329226 CCAAATCAATTGTATTTTCGCTGAGTT 59.671 33.333 5.13 0.00 37.32 3.01
3586 3649 6.808212 CCAAATCAATTGTATTTTCGCTGAGT 59.192 34.615 5.13 0.00 37.32 3.41
3587 3650 6.808212 ACCAAATCAATTGTATTTTCGCTGAG 59.192 34.615 5.13 0.00 37.32 3.35
3588 3651 6.686630 ACCAAATCAATTGTATTTTCGCTGA 58.313 32.000 5.13 0.00 37.32 4.26
3589 3652 6.949578 ACCAAATCAATTGTATTTTCGCTG 57.050 33.333 5.13 0.31 37.32 5.18
3590 3653 7.151308 TGAACCAAATCAATTGTATTTTCGCT 58.849 30.769 5.13 0.00 37.32 4.93
3591 3654 7.344910 TGAACCAAATCAATTGTATTTTCGC 57.655 32.000 5.13 2.04 37.32 4.70
3592 3655 8.759641 TGTTGAACCAAATCAATTGTATTTTCG 58.240 29.630 5.13 5.78 41.09 3.46
3595 3658 8.547069 CGTTGTTGAACCAAATCAATTGTATTT 58.453 29.630 5.13 7.53 41.09 1.40
3596 3659 7.170658 CCGTTGTTGAACCAAATCAATTGTATT 59.829 33.333 5.13 1.66 41.09 1.89
3597 3660 6.644592 CCGTTGTTGAACCAAATCAATTGTAT 59.355 34.615 5.13 0.00 41.09 2.29
3598 3661 5.980116 CCGTTGTTGAACCAAATCAATTGTA 59.020 36.000 5.13 0.00 41.09 2.41
3599 3662 4.808364 CCGTTGTTGAACCAAATCAATTGT 59.192 37.500 5.13 0.00 41.09 2.71
3600 3663 4.808364 ACCGTTGTTGAACCAAATCAATTG 59.192 37.500 0.00 0.00 41.09 2.32
3601 3664 5.017294 ACCGTTGTTGAACCAAATCAATT 57.983 34.783 0.00 0.00 41.09 2.32
3602 3665 4.664150 ACCGTTGTTGAACCAAATCAAT 57.336 36.364 0.00 0.00 41.09 2.57
3603 3666 5.578005 TTACCGTTGTTGAACCAAATCAA 57.422 34.783 0.00 0.00 36.99 2.57
3604 3667 5.176407 CTTACCGTTGTTGAACCAAATCA 57.824 39.130 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.