Multiple sequence alignment - TraesCS7B01G184400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G184400 chr7B 100.000 3059 0 0 1 3059 297121488 297118430 0.000000e+00 5650.0
1 TraesCS7B01G184400 chr7B 95.216 2195 88 7 535 2717 581347032 581344843 0.000000e+00 3456.0
2 TraesCS7B01G184400 chr3B 96.080 2194 73 6 535 2716 607815832 607818024 0.000000e+00 3563.0
3 TraesCS7B01G184400 chr3B 95.971 2184 79 7 535 2717 821050601 821052776 0.000000e+00 3537.0
4 TraesCS7B01G184400 chr3B 91.714 531 39 3 3 532 693840433 693840959 0.000000e+00 732.0
5 TraesCS7B01G184400 chr7A 95.995 2197 75 6 535 2719 694028758 694030953 0.000000e+00 3557.0
6 TraesCS7B01G184400 chr7A 95.812 2197 79 8 535 2719 706441659 706443854 0.000000e+00 3535.0
7 TraesCS7B01G184400 chr1A 95.579 2149 82 6 535 2671 58022336 58024483 0.000000e+00 3430.0
8 TraesCS7B01G184400 chr1A 95.502 2023 77 7 535 2545 58026504 58024484 0.000000e+00 3219.0
9 TraesCS7B01G184400 chr1A 95.681 1065 30 4 1664 2726 487468234 487469284 0.000000e+00 1698.0
10 TraesCS7B01G184400 chr1A 97.143 35 0 1 760 793 487467997 487468031 1.180000e-04 58.4
11 TraesCS7B01G184400 chr6B 85.847 1936 211 33 804 2716 654600210 654602105 0.000000e+00 1999.0
12 TraesCS7B01G184400 chr6B 91.887 530 37 4 3 532 287039547 287039024 0.000000e+00 736.0
13 TraesCS7B01G184400 chrUn 94.670 1182 43 4 1469 2644 94940007 94938840 0.000000e+00 1816.0
14 TraesCS7B01G184400 chr5B 96.682 1055 20 7 1664 2717 491653966 491652926 0.000000e+00 1740.0
15 TraesCS7B01G184400 chr5B 92.467 531 35 3 3 532 273588374 273588900 0.000000e+00 754.0
16 TraesCS7B01G184400 chr2B 93.058 533 31 4 1 532 312167958 312168485 0.000000e+00 774.0
17 TraesCS7B01G184400 chr2B 92.871 533 31 4 3 532 326004112 326004640 0.000000e+00 767.0
18 TraesCS7B01G184400 chr1B 91.902 531 36 5 3 532 299034266 299033742 0.000000e+00 736.0
19 TraesCS7B01G184400 chr1B 91.337 531 40 4 3 532 299014815 299014290 0.000000e+00 721.0
20 TraesCS7B01G184400 chr4A 91.386 534 38 6 1 532 303771244 303770717 0.000000e+00 725.0
21 TraesCS7B01G184400 chr1D 91.165 532 39 5 3 532 170244661 170244136 0.000000e+00 715.0
22 TraesCS7B01G184400 chr4D 95.608 296 13 0 2424 2719 366217973 366218268 2.760000e-130 475.0
23 TraesCS7B01G184400 chr4D 84.977 213 22 2 535 738 506089085 506088874 1.110000e-49 207.0
24 TraesCS7B01G184400 chr3D 87.066 317 38 3 2740 3054 431533176 431533491 3.750000e-94 355.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G184400 chr7B 297118430 297121488 3058 True 5650.0 5650 100.000 1 3059 1 chr7B.!!$R1 3058
1 TraesCS7B01G184400 chr7B 581344843 581347032 2189 True 3456.0 3456 95.216 535 2717 1 chr7B.!!$R2 2182
2 TraesCS7B01G184400 chr3B 607815832 607818024 2192 False 3563.0 3563 96.080 535 2716 1 chr3B.!!$F1 2181
3 TraesCS7B01G184400 chr3B 821050601 821052776 2175 False 3537.0 3537 95.971 535 2717 1 chr3B.!!$F3 2182
4 TraesCS7B01G184400 chr3B 693840433 693840959 526 False 732.0 732 91.714 3 532 1 chr3B.!!$F2 529
5 TraesCS7B01G184400 chr7A 694028758 694030953 2195 False 3557.0 3557 95.995 535 2719 1 chr7A.!!$F1 2184
6 TraesCS7B01G184400 chr7A 706441659 706443854 2195 False 3535.0 3535 95.812 535 2719 1 chr7A.!!$F2 2184
7 TraesCS7B01G184400 chr1A 58022336 58024483 2147 False 3430.0 3430 95.579 535 2671 1 chr1A.!!$F1 2136
8 TraesCS7B01G184400 chr1A 58024484 58026504 2020 True 3219.0 3219 95.502 535 2545 1 chr1A.!!$R1 2010
9 TraesCS7B01G184400 chr1A 487467997 487469284 1287 False 878.2 1698 96.412 760 2726 2 chr1A.!!$F2 1966
10 TraesCS7B01G184400 chr6B 654600210 654602105 1895 False 1999.0 1999 85.847 804 2716 1 chr6B.!!$F1 1912
11 TraesCS7B01G184400 chr6B 287039024 287039547 523 True 736.0 736 91.887 3 532 1 chr6B.!!$R1 529
12 TraesCS7B01G184400 chrUn 94938840 94940007 1167 True 1816.0 1816 94.670 1469 2644 1 chrUn.!!$R1 1175
13 TraesCS7B01G184400 chr5B 491652926 491653966 1040 True 1740.0 1740 96.682 1664 2717 1 chr5B.!!$R1 1053
14 TraesCS7B01G184400 chr5B 273588374 273588900 526 False 754.0 754 92.467 3 532 1 chr5B.!!$F1 529
15 TraesCS7B01G184400 chr2B 312167958 312168485 527 False 774.0 774 93.058 1 532 1 chr2B.!!$F1 531
16 TraesCS7B01G184400 chr2B 326004112 326004640 528 False 767.0 767 92.871 3 532 1 chr2B.!!$F2 529
17 TraesCS7B01G184400 chr1B 299033742 299034266 524 True 736.0 736 91.902 3 532 1 chr1B.!!$R2 529
18 TraesCS7B01G184400 chr1B 299014290 299014815 525 True 721.0 721 91.337 3 532 1 chr1B.!!$R1 529
19 TraesCS7B01G184400 chr4A 303770717 303771244 527 True 725.0 725 91.386 1 532 1 chr4A.!!$R1 531
20 TraesCS7B01G184400 chr1D 170244136 170244661 525 True 715.0 715 91.165 3 532 1 chr1D.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 626 0.035881 TCCACGGAGTAGACGACACT 59.964 55.0 0.0 0.0 41.61 3.55 F
1718 1763 0.685097 AGCCGAGTTGGTAAGAAGCA 59.315 50.0 0.0 0.0 41.21 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 1892 0.603065 GGATCAACAACTTGGGGCAC 59.397 55.0 0.0 0.0 0.00 5.01 R
2826 2926 0.031449 GCAGGCGACTAAGGCTCTAG 59.969 60.0 0.0 0.0 45.76 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.218488 GGGTTATCTTGGGTGAGTAAATTAGAT 58.782 37.037 0.00 0.00 0.00 1.98
59 60 9.628500 GGTTATCTTGGGTGAGTAAATTAGATT 57.372 33.333 0.00 0.00 0.00 2.40
135 138 9.438291 CTAACTTGAGTGTTTTGTTTGTCATAG 57.562 33.333 0.00 0.00 0.00 2.23
183 187 7.966753 GCTATATCATATTGTGTGATTTGCCAG 59.033 37.037 0.00 0.00 37.48 4.85
275 280 0.526662 CAGTAGGGTCGCGAGTCTTT 59.473 55.000 10.24 0.00 0.00 2.52
338 343 5.902613 TTTGCTTATGCTACATTTCTGCT 57.097 34.783 1.96 0.00 40.48 4.24
339 344 7.282901 TCATTTGCTTATGCTACATTTCTGCTA 59.717 33.333 1.96 0.00 40.48 3.49
340 345 7.572523 TTTGCTTATGCTACATTTCTGCTAT 57.427 32.000 1.96 0.00 40.48 2.97
495 501 0.539051 GGGACTAGCACAGTGAGCAT 59.461 55.000 15.15 0.00 37.72 3.79
532 538 2.243602 TCAGGTTTGGGTCGTTACAC 57.756 50.000 0.00 0.00 0.00 2.90
533 539 1.485480 TCAGGTTTGGGTCGTTACACA 59.515 47.619 0.00 0.00 37.19 3.72
620 626 0.035881 TCCACGGAGTAGACGACACT 59.964 55.000 0.00 0.00 41.61 3.55
624 630 1.154197 CGGAGTAGACGACACTGTCA 58.846 55.000 9.84 0.00 41.41 3.58
628 634 3.378742 GGAGTAGACGACACTGTCATGAT 59.621 47.826 9.84 0.00 41.41 2.45
881 887 5.801947 GTGATTCATGTGAAACTATGTTGGC 59.198 40.000 0.00 0.00 37.61 4.52
903 909 8.086143 TGGCTGTACCTCTGTAAACTTATATT 57.914 34.615 0.00 0.00 40.22 1.28
935 947 4.428615 TCTTTAGTAAATTGTTGGCCGC 57.571 40.909 0.00 0.00 0.00 6.53
1079 1091 2.643304 CCTGGGATGATGATCAGACCAT 59.357 50.000 17.62 4.69 36.14 3.55
1143 1155 3.757270 TGCGGGATTTAGGTTCAGAAAA 58.243 40.909 0.00 0.00 0.00 2.29
1176 1188 4.858935 TGAAGTGTGCTGATGCTTTAAAC 58.141 39.130 0.00 0.00 40.48 2.01
1178 1190 5.009911 TGAAGTGTGCTGATGCTTTAAACAT 59.990 36.000 3.81 3.81 40.48 2.71
1241 1253 5.239525 GTCACTTCAGGCACTACAAAGAAAT 59.760 40.000 0.00 0.00 36.02 2.17
1244 1256 6.980397 CACTTCAGGCACTACAAAGAAATTTT 59.020 34.615 0.00 0.00 36.02 1.82
1345 1357 6.150140 GTCTGAAAAGTCTTGCCTCAATGTAT 59.850 38.462 0.00 0.00 0.00 2.29
1498 1515 3.637229 GGAGCTATTCACAGGCACTAGTA 59.363 47.826 0.00 0.00 36.02 1.82
1662 1706 3.684788 CACATTGTCCTAAAAGACCTCCG 59.315 47.826 0.00 0.00 35.83 4.63
1718 1763 0.685097 AGCCGAGTTGGTAAGAAGCA 59.315 50.000 0.00 0.00 41.21 3.91
1776 1822 5.105513 ACCAAAAACCAAGAGTCATTTCGTT 60.106 36.000 0.00 0.00 0.00 3.85
1846 1892 3.028921 GCTGCCACTCCTCCTCCAG 62.029 68.421 0.00 0.00 0.00 3.86
1924 1970 7.037438 CCCAATTACCACAGATCAAAGAATTG 58.963 38.462 0.00 3.61 37.92 2.32
2074 2125 5.482908 ACCTGTGAAGTTATCTAGTTGCTG 58.517 41.667 0.00 0.00 0.00 4.41
2241 2324 5.220739 CCAGAACTTGTGCTATTGCTATGAC 60.221 44.000 0.00 0.00 40.48 3.06
2243 2326 6.758416 CAGAACTTGTGCTATTGCTATGACTA 59.242 38.462 0.00 0.00 40.48 2.59
2244 2327 7.440556 CAGAACTTGTGCTATTGCTATGACTAT 59.559 37.037 0.00 0.00 40.48 2.12
2246 2329 6.820335 ACTTGTGCTATTGCTATGACTATCA 58.180 36.000 0.00 0.00 40.48 2.15
2247 2330 7.448420 ACTTGTGCTATTGCTATGACTATCAT 58.552 34.615 0.00 0.00 40.48 2.45
2248 2331 7.601886 ACTTGTGCTATTGCTATGACTATCATC 59.398 37.037 0.00 0.00 40.48 2.92
2251 2342 6.808704 GTGCTATTGCTATGACTATCATCGAA 59.191 38.462 0.00 0.00 40.48 3.71
2684 2784 2.385803 GCTAGTACCTCACCTTAGGCA 58.614 52.381 0.00 0.00 40.62 4.75
2720 2820 0.966179 CAACCAAACAGCCCCTAACC 59.034 55.000 0.00 0.00 0.00 2.85
2723 2823 0.323451 CCAAACAGCCCCTAACCCTC 60.323 60.000 0.00 0.00 0.00 4.30
2724 2824 0.698818 CAAACAGCCCCTAACCCTCT 59.301 55.000 0.00 0.00 0.00 3.69
2725 2825 1.913419 CAAACAGCCCCTAACCCTCTA 59.087 52.381 0.00 0.00 0.00 2.43
2727 2827 1.880941 ACAGCCCCTAACCCTCTAAG 58.119 55.000 0.00 0.00 0.00 2.18
2728 2828 1.080666 ACAGCCCCTAACCCTCTAAGT 59.919 52.381 0.00 0.00 0.00 2.24
2729 2829 1.486726 CAGCCCCTAACCCTCTAAGTG 59.513 57.143 0.00 0.00 0.00 3.16
2730 2830 1.080666 AGCCCCTAACCCTCTAAGTGT 59.919 52.381 0.00 0.00 0.00 3.55
2731 2831 1.209747 GCCCCTAACCCTCTAAGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
2732 2832 2.829023 CCCCTAACCCTCTAAGTGTGA 58.171 52.381 0.00 0.00 0.00 3.58
2733 2833 3.178865 CCCCTAACCCTCTAAGTGTGAA 58.821 50.000 0.00 0.00 0.00 3.18
2734 2834 3.780850 CCCCTAACCCTCTAAGTGTGAAT 59.219 47.826 0.00 0.00 0.00 2.57
2735 2835 4.227527 CCCCTAACCCTCTAAGTGTGAATT 59.772 45.833 0.00 0.00 0.00 2.17
2736 2836 5.429130 CCCTAACCCTCTAAGTGTGAATTC 58.571 45.833 0.00 0.00 0.00 2.17
2737 2837 5.189934 CCCTAACCCTCTAAGTGTGAATTCT 59.810 44.000 7.05 0.00 0.00 2.40
2738 2838 6.109359 CCTAACCCTCTAAGTGTGAATTCTG 58.891 44.000 7.05 0.00 0.00 3.02
2739 2839 4.559862 ACCCTCTAAGTGTGAATTCTGG 57.440 45.455 7.05 0.00 0.00 3.86
2740 2840 3.264450 ACCCTCTAAGTGTGAATTCTGGG 59.736 47.826 7.05 0.00 37.08 4.45
2741 2841 3.519510 CCCTCTAAGTGTGAATTCTGGGA 59.480 47.826 7.05 0.00 33.14 4.37
2742 2842 4.164988 CCCTCTAAGTGTGAATTCTGGGAT 59.835 45.833 7.05 0.00 33.14 3.85
2743 2843 5.366768 CCCTCTAAGTGTGAATTCTGGGATA 59.633 44.000 7.05 0.00 33.14 2.59
2744 2844 6.043706 CCCTCTAAGTGTGAATTCTGGGATAT 59.956 42.308 7.05 0.00 33.14 1.63
2745 2845 7.420680 CCCTCTAAGTGTGAATTCTGGGATATT 60.421 40.741 7.05 0.00 33.14 1.28
2746 2846 7.443575 CCTCTAAGTGTGAATTCTGGGATATTG 59.556 40.741 7.05 0.00 0.00 1.90
2747 2847 7.282585 TCTAAGTGTGAATTCTGGGATATTGG 58.717 38.462 7.05 0.00 0.00 3.16
2748 2848 5.456921 AGTGTGAATTCTGGGATATTGGT 57.543 39.130 7.05 0.00 0.00 3.67
2749 2849 5.195940 AGTGTGAATTCTGGGATATTGGTG 58.804 41.667 7.05 0.00 0.00 4.17
2750 2850 4.339247 GTGTGAATTCTGGGATATTGGTGG 59.661 45.833 7.05 0.00 0.00 4.61
2751 2851 4.017591 TGTGAATTCTGGGATATTGGTGGT 60.018 41.667 7.05 0.00 0.00 4.16
2752 2852 4.339247 GTGAATTCTGGGATATTGGTGGTG 59.661 45.833 7.05 0.00 0.00 4.17
2753 2853 2.435372 TTCTGGGATATTGGTGGTGC 57.565 50.000 0.00 0.00 0.00 5.01
2754 2854 1.294041 TCTGGGATATTGGTGGTGCA 58.706 50.000 0.00 0.00 0.00 4.57
2755 2855 1.638070 TCTGGGATATTGGTGGTGCAA 59.362 47.619 0.00 0.00 0.00 4.08
2756 2856 1.750778 CTGGGATATTGGTGGTGCAAC 59.249 52.381 0.00 0.00 0.00 4.17
2757 2857 1.076187 TGGGATATTGGTGGTGCAACA 59.924 47.619 0.00 0.00 39.98 3.33
2758 2858 2.175202 GGGATATTGGTGGTGCAACAA 58.825 47.619 5.70 0.88 45.40 2.83
2759 2859 2.094234 GGGATATTGGTGGTGCAACAAC 60.094 50.000 14.47 14.47 44.09 3.32
2760 2860 2.415357 GGATATTGGTGGTGCAACAACG 60.415 50.000 16.48 0.00 44.09 4.10
2761 2861 1.681538 TATTGGTGGTGCAACAACGT 58.318 45.000 16.48 9.11 44.09 3.99
2762 2862 0.383949 ATTGGTGGTGCAACAACGTC 59.616 50.000 16.48 0.00 44.09 4.34
2763 2863 1.983196 TTGGTGGTGCAACAACGTCG 61.983 55.000 16.48 0.00 43.53 5.12
2764 2864 2.466140 GGTGGTGCAACAACGTCGT 61.466 57.895 5.70 0.00 43.53 4.34
2765 2865 1.426223 GTGGTGCAACAACGTCGTT 59.574 52.632 5.70 4.40 39.98 3.85
2766 2866 0.587985 GTGGTGCAACAACGTCGTTC 60.588 55.000 5.70 0.00 39.98 3.95
2767 2867 0.741574 TGGTGCAACAACGTCGTTCT 60.742 50.000 0.00 0.00 39.98 3.01
2768 2868 0.375803 GGTGCAACAACGTCGTTCTT 59.624 50.000 7.86 0.00 39.98 2.52
2769 2869 1.593793 GGTGCAACAACGTCGTTCTTC 60.594 52.381 7.86 0.00 39.98 2.87
2770 2870 1.061421 GTGCAACAACGTCGTTCTTCA 59.939 47.619 7.86 1.49 36.32 3.02
2771 2871 1.937223 TGCAACAACGTCGTTCTTCAT 59.063 42.857 7.86 0.00 0.00 2.57
2772 2872 2.286125 TGCAACAACGTCGTTCTTCATG 60.286 45.455 7.86 0.00 0.00 3.07
2773 2873 2.033236 GCAACAACGTCGTTCTTCATGA 60.033 45.455 7.86 0.00 0.00 3.07
2774 2874 3.363970 GCAACAACGTCGTTCTTCATGAT 60.364 43.478 7.86 0.00 0.00 2.45
2775 2875 4.143835 CAACAACGTCGTTCTTCATGATG 58.856 43.478 7.86 0.00 33.97 3.07
2776 2876 3.649073 ACAACGTCGTTCTTCATGATGA 58.351 40.909 7.86 7.19 32.32 2.92
2777 2877 4.055360 ACAACGTCGTTCTTCATGATGAA 58.945 39.130 17.55 17.55 34.79 2.57
2778 2878 4.690748 ACAACGTCGTTCTTCATGATGAAT 59.309 37.500 22.56 7.67 35.59 2.57
2779 2879 5.179368 ACAACGTCGTTCTTCATGATGAATT 59.821 36.000 22.56 12.33 35.59 2.17
2780 2880 5.456192 ACGTCGTTCTTCATGATGAATTC 57.544 39.130 22.56 15.57 35.59 2.17
2781 2881 5.171476 ACGTCGTTCTTCATGATGAATTCT 58.829 37.500 22.56 5.97 35.59 2.40
2782 2882 5.062683 ACGTCGTTCTTCATGATGAATTCTG 59.937 40.000 22.56 16.29 35.59 3.02
2783 2883 5.501413 CGTCGTTCTTCATGATGAATTCTGG 60.501 44.000 22.56 12.32 35.59 3.86
2784 2884 4.877823 TCGTTCTTCATGATGAATTCTGGG 59.122 41.667 22.56 11.02 35.59 4.45
2785 2885 4.877823 CGTTCTTCATGATGAATTCTGGGA 59.122 41.667 22.56 0.00 35.59 4.37
2786 2886 5.355071 CGTTCTTCATGATGAATTCTGGGAA 59.645 40.000 22.56 4.92 35.59 3.97
2787 2887 6.457934 CGTTCTTCATGATGAATTCTGGGAAG 60.458 42.308 22.56 11.76 35.59 3.46
2788 2888 4.885907 TCTTCATGATGAATTCTGGGAAGC 59.114 41.667 8.50 0.00 35.59 3.86
2789 2889 4.239428 TCATGATGAATTCTGGGAAGCA 57.761 40.909 7.05 0.00 0.00 3.91
2790 2890 4.204799 TCATGATGAATTCTGGGAAGCAG 58.795 43.478 7.05 0.00 0.00 4.24
2791 2891 2.372264 TGATGAATTCTGGGAAGCAGC 58.628 47.619 7.05 0.00 0.00 5.25
2792 2892 2.025605 TGATGAATTCTGGGAAGCAGCT 60.026 45.455 7.05 0.00 0.00 4.24
2793 2893 2.119801 TGAATTCTGGGAAGCAGCTC 57.880 50.000 7.05 0.00 0.00 4.09
2794 2894 1.352017 TGAATTCTGGGAAGCAGCTCA 59.648 47.619 7.05 0.00 0.00 4.26
2795 2895 1.742268 GAATTCTGGGAAGCAGCTCAC 59.258 52.381 0.00 0.00 0.00 3.51
2796 2896 0.034670 ATTCTGGGAAGCAGCTCACC 60.035 55.000 0.00 1.28 0.00 4.02
2797 2897 2.045536 CTGGGAAGCAGCTCACCC 60.046 66.667 23.46 23.46 42.37 4.61
2799 2899 2.436109 GGGAAGCAGCTCACCCAA 59.564 61.111 24.63 0.00 41.72 4.12
2800 2900 1.676967 GGGAAGCAGCTCACCCAAG 60.677 63.158 24.63 0.00 41.72 3.61
2801 2901 1.073897 GGAAGCAGCTCACCCAAGT 59.926 57.895 0.00 0.00 0.00 3.16
2802 2902 0.538287 GGAAGCAGCTCACCCAAGTT 60.538 55.000 0.00 0.00 0.00 2.66
2803 2903 0.877743 GAAGCAGCTCACCCAAGTTC 59.122 55.000 0.00 0.00 0.00 3.01
2804 2904 0.183492 AAGCAGCTCACCCAAGTTCA 59.817 50.000 0.00 0.00 0.00 3.18
2805 2905 0.536006 AGCAGCTCACCCAAGTTCAC 60.536 55.000 0.00 0.00 0.00 3.18
2806 2906 1.518903 GCAGCTCACCCAAGTTCACC 61.519 60.000 0.00 0.00 0.00 4.02
2807 2907 0.890996 CAGCTCACCCAAGTTCACCC 60.891 60.000 0.00 0.00 0.00 4.61
2808 2908 1.966451 GCTCACCCAAGTTCACCCG 60.966 63.158 0.00 0.00 0.00 5.28
2809 2909 1.450211 CTCACCCAAGTTCACCCGT 59.550 57.895 0.00 0.00 0.00 5.28
2810 2910 0.602905 CTCACCCAAGTTCACCCGTC 60.603 60.000 0.00 0.00 0.00 4.79
2811 2911 1.147376 CACCCAAGTTCACCCGTCA 59.853 57.895 0.00 0.00 0.00 4.35
2812 2912 1.147600 ACCCAAGTTCACCCGTCAC 59.852 57.895 0.00 0.00 0.00 3.67
2813 2913 1.599797 CCCAAGTTCACCCGTCACC 60.600 63.158 0.00 0.00 0.00 4.02
2814 2914 1.147376 CCAAGTTCACCCGTCACCA 59.853 57.895 0.00 0.00 0.00 4.17
2815 2915 1.164041 CCAAGTTCACCCGTCACCAC 61.164 60.000 0.00 0.00 0.00 4.16
2816 2916 0.179056 CAAGTTCACCCGTCACCACT 60.179 55.000 0.00 0.00 0.00 4.00
2817 2917 0.106149 AAGTTCACCCGTCACCACTC 59.894 55.000 0.00 0.00 0.00 3.51
2818 2918 1.301479 GTTCACCCGTCACCACTCC 60.301 63.158 0.00 0.00 0.00 3.85
2819 2919 2.513259 TTCACCCGTCACCACTCCC 61.513 63.158 0.00 0.00 0.00 4.30
2820 2920 4.016706 CACCCGTCACCACTCCCC 62.017 72.222 0.00 0.00 0.00 4.81
2835 2935 4.818314 CCCCCACTCTAGAGCCTT 57.182 61.111 19.97 0.00 0.00 4.35
2836 2936 3.948425 CCCCCACTCTAGAGCCTTA 57.052 57.895 19.97 0.00 0.00 2.69
2837 2937 1.710816 CCCCCACTCTAGAGCCTTAG 58.289 60.000 19.97 5.16 0.00 2.18
2838 2938 1.062810 CCCCCACTCTAGAGCCTTAGT 60.063 57.143 19.97 0.00 0.00 2.24
2839 2939 2.312390 CCCCACTCTAGAGCCTTAGTC 58.688 57.143 19.97 0.00 0.00 2.59
2840 2940 1.950909 CCCACTCTAGAGCCTTAGTCG 59.049 57.143 19.97 0.00 0.00 4.18
2841 2941 1.335496 CCACTCTAGAGCCTTAGTCGC 59.665 57.143 19.97 0.00 0.00 5.19
2842 2942 1.335496 CACTCTAGAGCCTTAGTCGCC 59.665 57.143 19.97 0.00 0.00 5.54
2843 2943 1.213430 ACTCTAGAGCCTTAGTCGCCT 59.787 52.381 19.97 0.00 0.00 5.52
2844 2944 1.606668 CTCTAGAGCCTTAGTCGCCTG 59.393 57.143 6.86 0.00 0.00 4.85
2845 2945 0.031449 CTAGAGCCTTAGTCGCCTGC 59.969 60.000 0.00 0.00 0.00 4.85
2846 2946 1.725557 TAGAGCCTTAGTCGCCTGCG 61.726 60.000 4.92 4.92 41.35 5.18
2847 2947 4.821589 AGCCTTAGTCGCCTGCGC 62.822 66.667 6.67 0.00 39.59 6.09
2857 2957 3.118454 GCCTGCGCGCACTAAAGA 61.118 61.111 33.09 7.39 0.00 2.52
2858 2958 2.677003 GCCTGCGCGCACTAAAGAA 61.677 57.895 33.09 6.48 0.00 2.52
2859 2959 1.866237 CCTGCGCGCACTAAAGAAA 59.134 52.632 33.09 5.60 0.00 2.52
2860 2960 0.447801 CCTGCGCGCACTAAAGAAAT 59.552 50.000 33.09 0.00 0.00 2.17
2861 2961 1.663643 CCTGCGCGCACTAAAGAAATA 59.336 47.619 33.09 4.08 0.00 1.40
2862 2962 2.536928 CCTGCGCGCACTAAAGAAATAC 60.537 50.000 33.09 0.00 0.00 1.89
2863 2963 2.070028 TGCGCGCACTAAAGAAATACA 58.930 42.857 33.09 0.66 0.00 2.29
2864 2964 2.159761 TGCGCGCACTAAAGAAATACAC 60.160 45.455 33.09 0.00 0.00 2.90
2865 2965 2.159761 GCGCGCACTAAAGAAATACACA 60.160 45.455 29.10 0.00 0.00 3.72
2866 2966 3.404564 CGCGCACTAAAGAAATACACAC 58.595 45.455 8.75 0.00 0.00 3.82
2867 2967 3.122948 CGCGCACTAAAGAAATACACACT 59.877 43.478 8.75 0.00 0.00 3.55
2868 2968 4.325204 CGCGCACTAAAGAAATACACACTA 59.675 41.667 8.75 0.00 0.00 2.74
2869 2969 5.498700 CGCGCACTAAAGAAATACACACTAG 60.499 44.000 8.75 0.00 0.00 2.57
2870 2970 5.724223 GCGCACTAAAGAAATACACACTAGC 60.724 44.000 0.30 0.00 0.00 3.42
2871 2971 5.577164 CGCACTAAAGAAATACACACTAGCT 59.423 40.000 0.00 0.00 0.00 3.32
2872 2972 6.237595 CGCACTAAAGAAATACACACTAGCTC 60.238 42.308 0.00 0.00 0.00 4.09
2873 2973 6.814146 GCACTAAAGAAATACACACTAGCTCT 59.186 38.462 0.00 0.00 0.00 4.09
2874 2974 7.974501 GCACTAAAGAAATACACACTAGCTCTA 59.025 37.037 0.00 0.00 0.00 2.43
2875 2975 9.856488 CACTAAAGAAATACACACTAGCTCTAA 57.144 33.333 0.00 0.00 0.00 2.10
2877 2977 9.522804 CTAAAGAAATACACACTAGCTCTAAGG 57.477 37.037 0.00 0.00 0.00 2.69
2878 2978 7.719871 AAGAAATACACACTAGCTCTAAGGA 57.280 36.000 0.00 0.00 0.00 3.36
2879 2979 7.719871 AGAAATACACACTAGCTCTAAGGAA 57.280 36.000 0.00 0.00 0.00 3.36
2880 2980 8.135382 AGAAATACACACTAGCTCTAAGGAAA 57.865 34.615 0.00 0.00 0.00 3.13
2881 2981 8.254508 AGAAATACACACTAGCTCTAAGGAAAG 58.745 37.037 0.00 0.00 0.00 2.62
2882 2982 7.719871 AATACACACTAGCTCTAAGGAAAGA 57.280 36.000 0.00 0.00 0.00 2.52
2883 2983 5.394224 ACACACTAGCTCTAAGGAAAGAC 57.606 43.478 0.00 0.00 0.00 3.01
2884 2984 4.833380 ACACACTAGCTCTAAGGAAAGACA 59.167 41.667 0.00 0.00 0.00 3.41
2885 2985 5.304614 ACACACTAGCTCTAAGGAAAGACAA 59.695 40.000 0.00 0.00 0.00 3.18
2886 2986 5.635700 CACACTAGCTCTAAGGAAAGACAAC 59.364 44.000 0.00 0.00 0.00 3.32
2887 2987 5.172205 CACTAGCTCTAAGGAAAGACAACC 58.828 45.833 0.00 0.00 0.00 3.77
2888 2988 4.838986 ACTAGCTCTAAGGAAAGACAACCA 59.161 41.667 0.00 0.00 0.00 3.67
2889 2989 4.917906 AGCTCTAAGGAAAGACAACCAT 57.082 40.909 0.00 0.00 0.00 3.55
2890 2990 4.837972 AGCTCTAAGGAAAGACAACCATC 58.162 43.478 0.00 0.00 0.00 3.51
2891 2991 4.287067 AGCTCTAAGGAAAGACAACCATCA 59.713 41.667 0.00 0.00 0.00 3.07
2892 2992 5.045286 AGCTCTAAGGAAAGACAACCATCAT 60.045 40.000 0.00 0.00 0.00 2.45
2893 2993 5.649831 GCTCTAAGGAAAGACAACCATCATT 59.350 40.000 0.00 0.00 0.00 2.57
2894 2994 6.404074 GCTCTAAGGAAAGACAACCATCATTG 60.404 42.308 0.00 0.00 35.59 2.82
2895 2995 4.525912 AAGGAAAGACAACCATCATTGC 57.474 40.909 0.00 0.00 32.47 3.56
2896 2996 3.499338 AGGAAAGACAACCATCATTGCA 58.501 40.909 0.00 0.00 32.47 4.08
2897 2997 3.896888 AGGAAAGACAACCATCATTGCAA 59.103 39.130 0.00 0.00 32.47 4.08
2898 2998 4.344679 AGGAAAGACAACCATCATTGCAAA 59.655 37.500 1.71 0.00 32.47 3.68
2899 2999 4.687483 GGAAAGACAACCATCATTGCAAAG 59.313 41.667 1.71 0.00 32.47 2.77
2900 3000 3.308438 AGACAACCATCATTGCAAAGC 57.692 42.857 1.71 0.00 32.47 3.51
2901 3001 2.629137 AGACAACCATCATTGCAAAGCA 59.371 40.909 1.71 0.00 36.47 3.91
2902 3002 3.259876 AGACAACCATCATTGCAAAGCAT 59.740 39.130 1.71 0.00 38.76 3.79
2903 3003 3.998341 GACAACCATCATTGCAAAGCATT 59.002 39.130 1.71 0.00 38.76 3.56
2904 3004 3.998341 ACAACCATCATTGCAAAGCATTC 59.002 39.130 1.71 0.00 38.76 2.67
2905 3005 3.255969 ACCATCATTGCAAAGCATTCC 57.744 42.857 1.71 0.00 38.76 3.01
2906 3006 2.093341 ACCATCATTGCAAAGCATTCCC 60.093 45.455 1.71 0.00 38.76 3.97
2907 3007 2.198406 CATCATTGCAAAGCATTCCCG 58.802 47.619 1.71 0.00 38.76 5.14
2908 3008 1.543607 TCATTGCAAAGCATTCCCGA 58.456 45.000 1.71 0.00 38.76 5.14
2909 3009 1.891811 TCATTGCAAAGCATTCCCGAA 59.108 42.857 1.71 0.00 38.76 4.30
2910 3010 2.094597 TCATTGCAAAGCATTCCCGAAG 60.095 45.455 1.71 0.00 38.76 3.79
2911 3011 1.614996 TTGCAAAGCATTCCCGAAGA 58.385 45.000 0.00 0.00 38.76 2.87
2912 3012 1.614996 TGCAAAGCATTCCCGAAGAA 58.385 45.000 0.00 0.00 39.32 2.52
2913 3013 1.959985 TGCAAAGCATTCCCGAAGAAA 59.040 42.857 0.00 0.00 38.21 2.52
2914 3014 2.562298 TGCAAAGCATTCCCGAAGAAAT 59.438 40.909 0.00 0.00 38.21 2.17
2915 3015 3.006752 TGCAAAGCATTCCCGAAGAAATT 59.993 39.130 0.00 0.00 38.21 1.82
2916 3016 3.614176 GCAAAGCATTCCCGAAGAAATTC 59.386 43.478 0.00 0.00 38.21 2.17
2917 3017 4.176271 CAAAGCATTCCCGAAGAAATTCC 58.824 43.478 0.00 0.00 38.21 3.01
2918 3018 3.085952 AGCATTCCCGAAGAAATTCCA 57.914 42.857 0.00 0.00 38.21 3.53
2919 3019 3.019564 AGCATTCCCGAAGAAATTCCAG 58.980 45.455 0.00 0.00 38.21 3.86
2920 3020 2.480244 GCATTCCCGAAGAAATTCCAGC 60.480 50.000 0.00 0.00 38.21 4.85
2921 3021 2.879103 TTCCCGAAGAAATTCCAGCT 57.121 45.000 0.00 0.00 0.00 4.24
2922 3022 2.113860 TCCCGAAGAAATTCCAGCTG 57.886 50.000 6.78 6.78 0.00 4.24
2923 3023 0.453390 CCCGAAGAAATTCCAGCTGC 59.547 55.000 8.66 0.00 0.00 5.25
2924 3024 1.167851 CCGAAGAAATTCCAGCTGCA 58.832 50.000 8.66 0.00 0.00 4.41
2925 3025 1.131883 CCGAAGAAATTCCAGCTGCAG 59.868 52.381 10.11 10.11 0.00 4.41
2926 3026 1.467035 CGAAGAAATTCCAGCTGCAGC 60.467 52.381 31.53 31.53 42.49 5.25
2939 3039 3.411415 GCTGCAGCGACTAATGAAATT 57.589 42.857 25.23 0.00 41.28 1.82
2940 3040 3.103738 GCTGCAGCGACTAATGAAATTG 58.896 45.455 25.23 0.00 36.99 2.32
2941 3041 3.103738 CTGCAGCGACTAATGAAATTGC 58.896 45.455 0.00 0.00 36.99 3.56
2942 3042 2.749076 TGCAGCGACTAATGAAATTGCT 59.251 40.909 0.00 0.00 36.99 3.91
2943 3043 3.181507 TGCAGCGACTAATGAAATTGCTC 60.182 43.478 0.00 0.00 36.99 4.26
2944 3044 3.181507 GCAGCGACTAATGAAATTGCTCA 60.182 43.478 0.00 0.00 36.99 4.26
2945 3045 4.672542 GCAGCGACTAATGAAATTGCTCAA 60.673 41.667 0.00 0.00 36.99 3.02
2946 3046 5.026462 CAGCGACTAATGAAATTGCTCAAG 58.974 41.667 0.00 0.00 36.99 3.02
2947 3047 4.937620 AGCGACTAATGAAATTGCTCAAGA 59.062 37.500 0.00 0.00 36.99 3.02
2948 3048 5.024555 GCGACTAATGAAATTGCTCAAGAC 58.975 41.667 0.00 0.00 36.99 3.01
2949 3049 5.251081 CGACTAATGAAATTGCTCAAGACG 58.749 41.667 0.00 0.00 36.99 4.18
2950 3050 5.062183 CGACTAATGAAATTGCTCAAGACGA 59.938 40.000 0.00 0.00 36.99 4.20
2951 3051 6.414408 ACTAATGAAATTGCTCAAGACGAG 57.586 37.500 0.00 0.00 40.44 4.18
2959 3059 3.540211 CTCAAGACGAGCCAATGGT 57.460 52.632 0.00 0.00 34.18 3.55
2960 3060 1.813513 CTCAAGACGAGCCAATGGTT 58.186 50.000 0.00 0.00 34.18 3.67
2961 3061 1.466167 CTCAAGACGAGCCAATGGTTG 59.534 52.381 0.00 0.00 34.18 3.77
2962 3062 1.071542 TCAAGACGAGCCAATGGTTGA 59.928 47.619 0.00 0.00 0.00 3.18
2963 3063 2.086869 CAAGACGAGCCAATGGTTGAT 58.913 47.619 0.00 0.00 0.00 2.57
2964 3064 1.742761 AGACGAGCCAATGGTTGATG 58.257 50.000 0.00 0.00 0.00 3.07
2965 3065 1.003580 AGACGAGCCAATGGTTGATGT 59.996 47.619 0.00 0.00 0.00 3.06
2966 3066 1.398390 GACGAGCCAATGGTTGATGTC 59.602 52.381 0.00 0.00 0.00 3.06
2967 3067 0.374758 CGAGCCAATGGTTGATGTCG 59.625 55.000 0.00 0.00 0.00 4.35
2968 3068 1.453155 GAGCCAATGGTTGATGTCGT 58.547 50.000 0.00 0.00 0.00 4.34
2969 3069 1.398390 GAGCCAATGGTTGATGTCGTC 59.602 52.381 0.00 0.00 0.00 4.20
2970 3070 1.164411 GCCAATGGTTGATGTCGTCA 58.836 50.000 0.00 0.00 34.25 4.35
2971 3071 1.539388 GCCAATGGTTGATGTCGTCAA 59.461 47.619 3.23 3.23 44.36 3.18
2979 3079 3.745332 TTGATGTCGTCAATGCATCAC 57.255 42.857 0.00 0.00 45.64 3.06
2980 3080 2.009051 TGATGTCGTCAATGCATCACC 58.991 47.619 0.00 0.00 42.51 4.02
2981 3081 2.009051 GATGTCGTCAATGCATCACCA 58.991 47.619 0.00 0.00 38.92 4.17
2982 3082 2.112380 TGTCGTCAATGCATCACCAT 57.888 45.000 0.00 0.00 0.00 3.55
2983 3083 2.009051 TGTCGTCAATGCATCACCATC 58.991 47.619 0.00 0.00 0.00 3.51
2984 3084 2.009051 GTCGTCAATGCATCACCATCA 58.991 47.619 0.00 0.00 0.00 3.07
2985 3085 2.009051 TCGTCAATGCATCACCATCAC 58.991 47.619 0.00 0.00 0.00 3.06
2986 3086 1.738908 CGTCAATGCATCACCATCACA 59.261 47.619 0.00 0.00 0.00 3.58
2987 3087 2.356695 CGTCAATGCATCACCATCACAT 59.643 45.455 0.00 0.00 0.00 3.21
2988 3088 3.547413 CGTCAATGCATCACCATCACATC 60.547 47.826 0.00 0.00 0.00 3.06
2989 3089 2.953648 TCAATGCATCACCATCACATCC 59.046 45.455 0.00 0.00 0.00 3.51
2990 3090 2.691011 CAATGCATCACCATCACATCCA 59.309 45.455 0.00 0.00 0.00 3.41
2991 3091 2.047002 TGCATCACCATCACATCCAG 57.953 50.000 0.00 0.00 0.00 3.86
2992 3092 1.560611 TGCATCACCATCACATCCAGA 59.439 47.619 0.00 0.00 0.00 3.86
2993 3093 1.945394 GCATCACCATCACATCCAGAC 59.055 52.381 0.00 0.00 0.00 3.51
2994 3094 2.421107 GCATCACCATCACATCCAGACT 60.421 50.000 0.00 0.00 0.00 3.24
2995 3095 3.464907 CATCACCATCACATCCAGACTC 58.535 50.000 0.00 0.00 0.00 3.36
2996 3096 2.539302 TCACCATCACATCCAGACTCA 58.461 47.619 0.00 0.00 0.00 3.41
2997 3097 2.905736 TCACCATCACATCCAGACTCAA 59.094 45.455 0.00 0.00 0.00 3.02
2998 3098 3.520721 TCACCATCACATCCAGACTCAAT 59.479 43.478 0.00 0.00 0.00 2.57
2999 3099 4.019051 TCACCATCACATCCAGACTCAATT 60.019 41.667 0.00 0.00 0.00 2.32
3000 3100 4.334759 CACCATCACATCCAGACTCAATTC 59.665 45.833 0.00 0.00 0.00 2.17
3001 3101 4.226846 ACCATCACATCCAGACTCAATTCT 59.773 41.667 0.00 0.00 0.00 2.40
3002 3102 5.426509 ACCATCACATCCAGACTCAATTCTA 59.573 40.000 0.00 0.00 0.00 2.10
3003 3103 6.100859 ACCATCACATCCAGACTCAATTCTAT 59.899 38.462 0.00 0.00 0.00 1.98
3004 3104 6.649973 CCATCACATCCAGACTCAATTCTATC 59.350 42.308 0.00 0.00 0.00 2.08
3005 3105 6.796785 TCACATCCAGACTCAATTCTATCA 57.203 37.500 0.00 0.00 0.00 2.15
3006 3106 6.814043 TCACATCCAGACTCAATTCTATCAG 58.186 40.000 0.00 0.00 0.00 2.90
3007 3107 6.608808 TCACATCCAGACTCAATTCTATCAGA 59.391 38.462 0.00 0.00 0.00 3.27
3008 3108 7.289549 TCACATCCAGACTCAATTCTATCAGAT 59.710 37.037 0.00 0.00 0.00 2.90
3009 3109 7.385478 CACATCCAGACTCAATTCTATCAGATG 59.615 40.741 0.00 0.00 34.01 2.90
3010 3110 7.289549 ACATCCAGACTCAATTCTATCAGATGA 59.710 37.037 0.00 0.00 32.57 2.92
3011 3111 7.048629 TCCAGACTCAATTCTATCAGATGAC 57.951 40.000 0.00 0.00 0.00 3.06
3012 3112 6.608808 TCCAGACTCAATTCTATCAGATGACA 59.391 38.462 0.00 0.00 0.00 3.58
3013 3113 6.700960 CCAGACTCAATTCTATCAGATGACAC 59.299 42.308 0.00 0.00 0.00 3.67
3014 3114 7.417683 CCAGACTCAATTCTATCAGATGACACT 60.418 40.741 0.00 0.00 0.00 3.55
3015 3115 8.628280 CAGACTCAATTCTATCAGATGACACTA 58.372 37.037 0.00 0.00 0.00 2.74
3016 3116 9.194972 AGACTCAATTCTATCAGATGACACTAA 57.805 33.333 0.00 0.00 0.00 2.24
3017 3117 9.979578 GACTCAATTCTATCAGATGACACTAAT 57.020 33.333 0.00 0.00 0.00 1.73
3028 3128 9.988815 ATCAGATGACACTAATATTGTTCCTAC 57.011 33.333 0.00 0.00 0.00 3.18
3029 3129 9.201989 TCAGATGACACTAATATTGTTCCTACT 57.798 33.333 0.00 0.00 0.00 2.57
3032 3132 9.694137 GATGACACTAATATTGTTCCTACTACC 57.306 37.037 0.00 0.00 0.00 3.18
3033 3133 8.598202 TGACACTAATATTGTTCCTACTACCA 57.402 34.615 0.00 0.00 0.00 3.25
3034 3134 8.472413 TGACACTAATATTGTTCCTACTACCAC 58.528 37.037 0.00 0.00 0.00 4.16
3035 3135 8.370266 ACACTAATATTGTTCCTACTACCACA 57.630 34.615 0.00 0.00 0.00 4.17
3036 3136 8.475639 ACACTAATATTGTTCCTACTACCACAG 58.524 37.037 0.00 0.00 0.00 3.66
3037 3137 7.438459 CACTAATATTGTTCCTACTACCACAGC 59.562 40.741 0.00 0.00 0.00 4.40
3038 3138 6.561519 AATATTGTTCCTACTACCACAGCT 57.438 37.500 0.00 0.00 0.00 4.24
3039 3139 3.678056 TTGTTCCTACTACCACAGCTG 57.322 47.619 13.48 13.48 0.00 4.24
3040 3140 2.884320 TGTTCCTACTACCACAGCTGA 58.116 47.619 23.35 0.00 0.00 4.26
3041 3141 2.826128 TGTTCCTACTACCACAGCTGAG 59.174 50.000 23.35 13.32 0.00 3.35
3042 3142 1.475403 TCCTACTACCACAGCTGAGC 58.525 55.000 23.35 0.00 0.00 4.26
3043 3143 1.186200 CCTACTACCACAGCTGAGCA 58.814 55.000 23.35 1.94 0.00 4.26
3044 3144 1.550524 CCTACTACCACAGCTGAGCAA 59.449 52.381 23.35 1.94 0.00 3.91
3045 3145 2.417924 CCTACTACCACAGCTGAGCAAG 60.418 54.545 23.35 14.28 0.00 4.01
3046 3146 1.051812 ACTACCACAGCTGAGCAAGT 58.948 50.000 23.35 14.93 0.00 3.16
3047 3147 1.417890 ACTACCACAGCTGAGCAAGTT 59.582 47.619 23.35 0.00 0.00 2.66
3048 3148 1.802960 CTACCACAGCTGAGCAAGTTG 59.197 52.381 23.35 5.94 42.51 3.16
3049 3149 1.285023 CCACAGCTGAGCAAGTTGC 59.715 57.895 23.35 20.44 45.46 4.17
3058 3158 2.359230 GCAAGTTGCTCGAGCCCT 60.359 61.111 33.23 25.06 40.96 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.196193 CACTACCTGAACTCACAACCAAA 58.804 43.478 0.00 0.00 0.00 3.28
59 60 3.433031 CCACTACCTGAACTCACAACCAA 60.433 47.826 0.00 0.00 0.00 3.67
60 61 2.104111 CCACTACCTGAACTCACAACCA 59.896 50.000 0.00 0.00 0.00 3.67
135 138 5.240844 AGCAAACCTACATCCACAAGTAAAC 59.759 40.000 0.00 0.00 0.00 2.01
275 280 3.007940 CCCACTGGAGAACATGTTGAGTA 59.992 47.826 17.58 0.00 0.00 2.59
346 351 7.560368 AGTACAGAACTAGCTTTGCTCAATAT 58.440 34.615 0.00 0.00 40.44 1.28
354 359 8.651588 CAAACTCATAGTACAGAACTAGCTTTG 58.348 37.037 0.00 0.00 43.90 2.77
495 501 7.825331 AACCTGATAAGATTCGATGTCTCTA 57.175 36.000 1.80 0.00 0.00 2.43
532 538 7.013823 ACCATCATCTAGGATCCAGTTATTG 57.986 40.000 15.82 3.92 0.00 1.90
533 539 6.214412 GGACCATCATCTAGGATCCAGTTATT 59.786 42.308 15.82 0.00 0.00 1.40
620 626 4.623886 GCTCTCCTGGTAAACATCATGACA 60.624 45.833 0.00 0.00 0.00 3.58
624 630 2.846206 TGGCTCTCCTGGTAAACATCAT 59.154 45.455 0.00 0.00 0.00 2.45
628 634 1.623811 GTCTGGCTCTCCTGGTAAACA 59.376 52.381 0.00 0.00 32.70 2.83
687 693 3.374764 TGAGCTGCTAAGTTATCCTCCA 58.625 45.455 0.15 0.00 0.00 3.86
739 745 2.307496 AAACCCATCAACATCAGCCA 57.693 45.000 0.00 0.00 0.00 4.75
935 947 3.698040 AGGTGAGGCAAATAAGCATGAAG 59.302 43.478 0.00 0.00 35.83 3.02
1064 1076 7.013942 CCAACATAAACATGGTCTGATCATCAT 59.986 37.037 0.00 0.00 0.00 2.45
1079 1091 5.011431 TCAATGCACCAATCCAACATAAACA 59.989 36.000 0.00 0.00 0.00 2.83
1143 1155 5.737860 TCAGCACACTTCATAAGATGATGT 58.262 37.500 11.04 2.96 45.21 3.06
1176 1188 5.128499 TGTCACCCCCATAGCAAATTTTATG 59.872 40.000 3.74 3.74 0.00 1.90
1178 1190 4.464597 GTGTCACCCCCATAGCAAATTTTA 59.535 41.667 0.00 0.00 0.00 1.52
1241 1253 1.068885 CGGCGGCAATGTACTTCAAAA 60.069 47.619 10.53 0.00 0.00 2.44
1244 1256 2.395360 GCGGCGGCAATGTACTTCA 61.395 57.895 9.78 0.00 39.62 3.02
1440 1453 5.505181 AGAACTTGATGGGCTTAGAAAGA 57.495 39.130 0.00 0.00 0.00 2.52
1441 1454 6.410540 AGTAGAACTTGATGGGCTTAGAAAG 58.589 40.000 0.00 0.00 0.00 2.62
1442 1455 6.374417 AGTAGAACTTGATGGGCTTAGAAA 57.626 37.500 0.00 0.00 0.00 2.52
1443 1456 7.344612 TCATAGTAGAACTTGATGGGCTTAGAA 59.655 37.037 0.00 0.00 0.00 2.10
1444 1457 6.839134 TCATAGTAGAACTTGATGGGCTTAGA 59.161 38.462 0.00 0.00 0.00 2.10
1498 1515 2.173519 CATGGCCAAAGAACCATCAGT 58.826 47.619 10.96 0.00 44.97 3.41
1594 1611 1.691434 CTCAAGAGGGCCCTCATACTC 59.309 57.143 45.47 24.76 44.99 2.59
1662 1706 6.183361 ATGAATTATCACCACCTACAGGTACC 60.183 42.308 2.73 2.73 42.16 3.34
1776 1822 3.067106 GTTGATTTCTTCAGCGGACTCA 58.933 45.455 0.00 0.00 35.27 3.41
1846 1892 0.603065 GGATCAACAACTTGGGGCAC 59.397 55.000 0.00 0.00 0.00 5.01
1924 1970 2.154462 AGATAAGTGCACACCAACAGC 58.846 47.619 21.04 0.00 0.00 4.40
2074 2125 4.390297 GCCAACTTCTAGACATGACAAGTC 59.610 45.833 0.00 2.56 36.26 3.01
2111 2162 5.649782 ATACCAAAAGTTGCCATCTTCTG 57.350 39.130 0.00 0.00 0.00 3.02
2243 2326 8.040727 TCCGTCCATCATTATAAATTCGATGAT 58.959 33.333 14.37 5.54 39.21 2.45
2244 2327 7.382898 TCCGTCCATCATTATAAATTCGATGA 58.617 34.615 14.37 3.79 36.42 2.92
2246 2329 7.878127 AGTTCCGTCCATCATTATAAATTCGAT 59.122 33.333 0.00 0.00 0.00 3.59
2247 2330 7.214381 AGTTCCGTCCATCATTATAAATTCGA 58.786 34.615 0.00 0.00 0.00 3.71
2248 2331 7.421530 AGTTCCGTCCATCATTATAAATTCG 57.578 36.000 0.00 0.00 0.00 3.34
2251 2342 6.545666 TGCAAGTTCCGTCCATCATTATAAAT 59.454 34.615 0.00 0.00 0.00 1.40
2297 2389 9.677567 TTCAAAACTACAAACTCATAATCAAGC 57.322 29.630 0.00 0.00 0.00 4.01
2336 2428 9.028284 CATGGAGCATTTACTATTAATCCCATT 57.972 33.333 0.00 0.00 0.00 3.16
2499 2599 0.766131 TTTCCTGCCACGGTTTCCTA 59.234 50.000 0.00 0.00 0.00 2.94
2684 2784 2.827921 GGTTGGAGACTCAAATTGCCAT 59.172 45.455 4.53 0.00 0.00 4.40
2720 2820 4.826274 TCCCAGAATTCACACTTAGAGG 57.174 45.455 8.44 0.00 0.00 3.69
2723 2823 7.012704 CACCAATATCCCAGAATTCACACTTAG 59.987 40.741 8.44 0.00 0.00 2.18
2724 2824 6.828273 CACCAATATCCCAGAATTCACACTTA 59.172 38.462 8.44 0.00 0.00 2.24
2725 2825 5.653769 CACCAATATCCCAGAATTCACACTT 59.346 40.000 8.44 0.00 0.00 3.16
2727 2827 4.339247 CCACCAATATCCCAGAATTCACAC 59.661 45.833 8.44 0.00 0.00 3.82
2728 2828 4.017591 ACCACCAATATCCCAGAATTCACA 60.018 41.667 8.44 0.00 0.00 3.58
2729 2829 4.339247 CACCACCAATATCCCAGAATTCAC 59.661 45.833 8.44 0.00 0.00 3.18
2730 2830 4.535781 CACCACCAATATCCCAGAATTCA 58.464 43.478 8.44 0.00 0.00 2.57
2731 2831 3.319122 GCACCACCAATATCCCAGAATTC 59.681 47.826 0.00 0.00 0.00 2.17
2732 2832 3.299503 GCACCACCAATATCCCAGAATT 58.700 45.455 0.00 0.00 0.00 2.17
2733 2833 2.244510 TGCACCACCAATATCCCAGAAT 59.755 45.455 0.00 0.00 0.00 2.40
2734 2834 1.638070 TGCACCACCAATATCCCAGAA 59.362 47.619 0.00 0.00 0.00 3.02
2735 2835 1.294041 TGCACCACCAATATCCCAGA 58.706 50.000 0.00 0.00 0.00 3.86
2736 2836 1.750778 GTTGCACCACCAATATCCCAG 59.249 52.381 0.00 0.00 0.00 4.45
2737 2837 1.076187 TGTTGCACCACCAATATCCCA 59.924 47.619 0.00 0.00 0.00 4.37
2738 2838 1.846007 TGTTGCACCACCAATATCCC 58.154 50.000 0.00 0.00 0.00 3.85
2739 2839 2.415357 CGTTGTTGCACCACCAATATCC 60.415 50.000 0.00 0.00 0.00 2.59
2740 2840 2.227865 ACGTTGTTGCACCACCAATATC 59.772 45.455 0.00 0.00 0.00 1.63
2741 2841 2.227865 GACGTTGTTGCACCACCAATAT 59.772 45.455 0.00 0.00 0.00 1.28
2742 2842 1.604755 GACGTTGTTGCACCACCAATA 59.395 47.619 0.00 0.00 0.00 1.90
2743 2843 0.383949 GACGTTGTTGCACCACCAAT 59.616 50.000 0.00 0.00 0.00 3.16
2744 2844 1.803943 GACGTTGTTGCACCACCAA 59.196 52.632 0.00 0.00 0.00 3.67
2745 2845 2.465299 CGACGTTGTTGCACCACCA 61.465 57.895 0.00 0.00 0.00 4.17
2746 2846 1.984321 AACGACGTTGTTGCACCACC 61.984 55.000 20.35 0.00 0.00 4.61
2747 2847 0.587985 GAACGACGTTGTTGCACCAC 60.588 55.000 25.62 6.48 30.75 4.16
2748 2848 0.741574 AGAACGACGTTGTTGCACCA 60.742 50.000 25.62 0.00 30.75 4.17
2749 2849 0.375803 AAGAACGACGTTGTTGCACC 59.624 50.000 25.62 11.08 28.02 5.01
2750 2850 1.061421 TGAAGAACGACGTTGTTGCAC 59.939 47.619 25.51 13.03 29.27 4.57
2751 2851 1.360820 TGAAGAACGACGTTGTTGCA 58.639 45.000 25.51 18.92 29.27 4.08
2752 2852 2.033236 TCATGAAGAACGACGTTGTTGC 60.033 45.455 25.51 16.95 29.27 4.17
2753 2853 3.852471 TCATGAAGAACGACGTTGTTG 57.148 42.857 25.51 13.61 29.27 3.33
2754 2854 4.055360 TCATCATGAAGAACGACGTTGTT 58.945 39.130 21.44 21.44 31.77 2.83
2755 2855 3.649073 TCATCATGAAGAACGACGTTGT 58.351 40.909 19.60 11.89 0.00 3.32
2756 2856 4.645667 TTCATCATGAAGAACGACGTTG 57.354 40.909 19.60 3.09 31.83 4.10
2757 2857 5.639506 AGAATTCATCATGAAGAACGACGTT 59.360 36.000 14.11 14.11 40.05 3.99
2758 2858 5.062683 CAGAATTCATCATGAAGAACGACGT 59.937 40.000 15.13 0.00 40.05 4.34
2759 2859 5.487581 CAGAATTCATCATGAAGAACGACG 58.512 41.667 15.13 2.29 40.05 5.12
2760 2860 5.220739 CCCAGAATTCATCATGAAGAACGAC 60.221 44.000 15.13 9.66 40.05 4.34
2761 2861 4.877823 CCCAGAATTCATCATGAAGAACGA 59.122 41.667 15.13 0.00 40.05 3.85
2762 2862 4.877823 TCCCAGAATTCATCATGAAGAACG 59.122 41.667 15.13 5.20 40.05 3.95
2763 2863 6.679884 GCTTCCCAGAATTCATCATGAAGAAC 60.680 42.308 15.13 4.59 40.05 3.01
2764 2864 5.359009 GCTTCCCAGAATTCATCATGAAGAA 59.641 40.000 15.16 15.16 40.05 2.52
2765 2865 4.885907 GCTTCCCAGAATTCATCATGAAGA 59.114 41.667 18.93 0.00 40.05 2.87
2766 2866 4.643334 TGCTTCCCAGAATTCATCATGAAG 59.357 41.667 6.19 12.08 40.05 3.02
2767 2867 4.602107 TGCTTCCCAGAATTCATCATGAA 58.398 39.130 8.44 1.59 41.09 2.57
2768 2868 4.204799 CTGCTTCCCAGAATTCATCATGA 58.795 43.478 8.44 0.00 44.64 3.07
2769 2869 3.243434 GCTGCTTCCCAGAATTCATCATG 60.243 47.826 8.44 0.00 44.64 3.07
2770 2870 2.957006 GCTGCTTCCCAGAATTCATCAT 59.043 45.455 8.44 0.00 44.64 2.45
2771 2871 2.025605 AGCTGCTTCCCAGAATTCATCA 60.026 45.455 8.44 0.00 44.64 3.07
2772 2872 2.617774 GAGCTGCTTCCCAGAATTCATC 59.382 50.000 8.44 0.00 44.64 2.92
2773 2873 2.025605 TGAGCTGCTTCCCAGAATTCAT 60.026 45.455 8.44 0.00 44.64 2.57
2774 2874 1.352017 TGAGCTGCTTCCCAGAATTCA 59.648 47.619 8.44 0.00 44.64 2.57
2775 2875 1.742268 GTGAGCTGCTTCCCAGAATTC 59.258 52.381 2.53 0.00 44.64 2.17
2776 2876 1.615384 GGTGAGCTGCTTCCCAGAATT 60.615 52.381 2.53 0.00 44.64 2.17
2777 2877 0.034670 GGTGAGCTGCTTCCCAGAAT 60.035 55.000 2.53 0.00 44.64 2.40
2778 2878 1.376466 GGTGAGCTGCTTCCCAGAA 59.624 57.895 2.53 0.00 44.64 3.02
2779 2879 2.596851 GGGTGAGCTGCTTCCCAGA 61.597 63.158 27.33 0.23 44.64 3.86
2780 2880 2.045536 GGGTGAGCTGCTTCCCAG 60.046 66.667 27.33 0.00 44.67 4.45
2781 2881 2.416107 CTTGGGTGAGCTGCTTCCCA 62.416 60.000 29.56 29.56 46.77 4.37
2782 2882 1.676967 CTTGGGTGAGCTGCTTCCC 60.677 63.158 26.29 26.29 40.26 3.97
2783 2883 0.538287 AACTTGGGTGAGCTGCTTCC 60.538 55.000 2.53 9.82 0.00 3.46
2784 2884 0.877743 GAACTTGGGTGAGCTGCTTC 59.122 55.000 2.53 0.10 0.00 3.86
2785 2885 0.183492 TGAACTTGGGTGAGCTGCTT 59.817 50.000 2.53 0.00 0.00 3.91
2786 2886 0.536006 GTGAACTTGGGTGAGCTGCT 60.536 55.000 0.00 0.00 0.00 4.24
2787 2887 1.518903 GGTGAACTTGGGTGAGCTGC 61.519 60.000 0.00 0.00 0.00 5.25
2788 2888 0.890996 GGGTGAACTTGGGTGAGCTG 60.891 60.000 0.00 0.00 0.00 4.24
2789 2889 1.456287 GGGTGAACTTGGGTGAGCT 59.544 57.895 0.00 0.00 0.00 4.09
2790 2890 1.966451 CGGGTGAACTTGGGTGAGC 60.966 63.158 0.00 0.00 0.00 4.26
2791 2891 0.602905 GACGGGTGAACTTGGGTGAG 60.603 60.000 0.00 0.00 0.00 3.51
2792 2892 1.338890 TGACGGGTGAACTTGGGTGA 61.339 55.000 0.00 0.00 0.00 4.02
2793 2893 1.147376 TGACGGGTGAACTTGGGTG 59.853 57.895 0.00 0.00 0.00 4.61
2794 2894 1.147600 GTGACGGGTGAACTTGGGT 59.852 57.895 0.00 0.00 0.00 4.51
2795 2895 1.599797 GGTGACGGGTGAACTTGGG 60.600 63.158 0.00 0.00 0.00 4.12
2796 2896 1.147376 TGGTGACGGGTGAACTTGG 59.853 57.895 0.00 0.00 0.00 3.61
2797 2897 0.179056 AGTGGTGACGGGTGAACTTG 60.179 55.000 0.00 0.00 0.00 3.16
2798 2898 0.106149 GAGTGGTGACGGGTGAACTT 59.894 55.000 0.00 0.00 0.00 2.66
2799 2899 1.746517 GAGTGGTGACGGGTGAACT 59.253 57.895 0.00 0.00 0.00 3.01
2800 2900 1.301479 GGAGTGGTGACGGGTGAAC 60.301 63.158 0.00 0.00 0.00 3.18
2801 2901 2.513259 GGGAGTGGTGACGGGTGAA 61.513 63.158 0.00 0.00 0.00 3.18
2802 2902 2.920912 GGGAGTGGTGACGGGTGA 60.921 66.667 0.00 0.00 0.00 4.02
2803 2903 4.016706 GGGGAGTGGTGACGGGTG 62.017 72.222 0.00 0.00 0.00 4.61
2818 2918 1.062810 ACTAAGGCTCTAGAGTGGGGG 60.063 57.143 20.75 11.07 0.00 5.40
2819 2919 2.312390 GACTAAGGCTCTAGAGTGGGG 58.688 57.143 20.75 10.13 0.00 4.96
2820 2920 1.950909 CGACTAAGGCTCTAGAGTGGG 59.049 57.143 20.75 9.50 0.00 4.61
2821 2921 1.335496 GCGACTAAGGCTCTAGAGTGG 59.665 57.143 20.75 6.17 0.00 4.00
2822 2922 1.335496 GGCGACTAAGGCTCTAGAGTG 59.665 57.143 20.75 8.91 0.00 3.51
2823 2923 1.213430 AGGCGACTAAGGCTCTAGAGT 59.787 52.381 20.75 4.15 44.09 3.24
2824 2924 1.606668 CAGGCGACTAAGGCTCTAGAG 59.393 57.143 15.85 15.85 45.76 2.43
2825 2925 1.681538 CAGGCGACTAAGGCTCTAGA 58.318 55.000 0.00 0.00 45.76 2.43
2826 2926 0.031449 GCAGGCGACTAAGGCTCTAG 59.969 60.000 0.00 0.00 45.76 2.43
2827 2927 1.725557 CGCAGGCGACTAAGGCTCTA 61.726 60.000 8.15 0.00 45.76 2.43
2828 2928 2.896443 GCAGGCGACTAAGGCTCT 59.104 61.111 0.00 0.00 45.76 4.09
2829 2929 2.583593 CGCAGGCGACTAAGGCTC 60.584 66.667 8.15 0.00 45.76 4.70
2840 2940 2.182614 TTTCTTTAGTGCGCGCAGGC 62.183 55.000 37.44 24.43 0.00 4.85
2841 2941 0.447801 ATTTCTTTAGTGCGCGCAGG 59.552 50.000 37.44 21.04 0.00 4.85
2842 2942 2.093625 TGTATTTCTTTAGTGCGCGCAG 59.906 45.455 37.44 22.90 0.00 5.18
2843 2943 2.070028 TGTATTTCTTTAGTGCGCGCA 58.930 42.857 33.09 33.09 0.00 6.09
2844 2944 2.159761 TGTGTATTTCTTTAGTGCGCGC 60.160 45.455 27.26 27.26 0.00 6.86
2845 2945 3.122948 AGTGTGTATTTCTTTAGTGCGCG 59.877 43.478 0.00 0.00 0.00 6.86
2846 2946 4.663636 AGTGTGTATTTCTTTAGTGCGC 57.336 40.909 0.00 0.00 0.00 6.09
2847 2947 5.577164 AGCTAGTGTGTATTTCTTTAGTGCG 59.423 40.000 0.00 0.00 0.00 5.34
2848 2948 6.814146 AGAGCTAGTGTGTATTTCTTTAGTGC 59.186 38.462 0.00 0.00 0.00 4.40
2849 2949 9.856488 TTAGAGCTAGTGTGTATTTCTTTAGTG 57.144 33.333 0.00 0.00 0.00 2.74
2851 2951 9.522804 CCTTAGAGCTAGTGTGTATTTCTTTAG 57.477 37.037 0.00 0.00 0.00 1.85
2852 2952 9.251440 TCCTTAGAGCTAGTGTGTATTTCTTTA 57.749 33.333 0.00 0.00 0.00 1.85
2853 2953 8.135382 TCCTTAGAGCTAGTGTGTATTTCTTT 57.865 34.615 0.00 0.00 0.00 2.52
2854 2954 7.719871 TCCTTAGAGCTAGTGTGTATTTCTT 57.280 36.000 0.00 0.00 0.00 2.52
2855 2955 7.719871 TTCCTTAGAGCTAGTGTGTATTTCT 57.280 36.000 0.00 0.00 0.00 2.52
2856 2956 8.251721 TCTTTCCTTAGAGCTAGTGTGTATTTC 58.748 37.037 0.00 0.00 0.00 2.17
2857 2957 8.035984 GTCTTTCCTTAGAGCTAGTGTGTATTT 58.964 37.037 0.00 0.00 0.00 1.40
2858 2958 7.178628 TGTCTTTCCTTAGAGCTAGTGTGTATT 59.821 37.037 0.00 0.00 0.00 1.89
2859 2959 6.663953 TGTCTTTCCTTAGAGCTAGTGTGTAT 59.336 38.462 0.00 0.00 0.00 2.29
2860 2960 6.008331 TGTCTTTCCTTAGAGCTAGTGTGTA 58.992 40.000 0.00 0.00 0.00 2.90
2861 2961 4.833380 TGTCTTTCCTTAGAGCTAGTGTGT 59.167 41.667 0.00 0.00 0.00 3.72
2862 2962 5.392767 TGTCTTTCCTTAGAGCTAGTGTG 57.607 43.478 0.00 0.00 0.00 3.82
2863 2963 5.279556 GGTTGTCTTTCCTTAGAGCTAGTGT 60.280 44.000 0.00 0.00 0.00 3.55
2864 2964 5.172205 GGTTGTCTTTCCTTAGAGCTAGTG 58.828 45.833 0.00 0.00 0.00 2.74
2865 2965 4.838986 TGGTTGTCTTTCCTTAGAGCTAGT 59.161 41.667 0.00 0.00 0.00 2.57
2866 2966 5.407407 TGGTTGTCTTTCCTTAGAGCTAG 57.593 43.478 0.00 0.00 0.00 3.42
2867 2967 5.483937 TGATGGTTGTCTTTCCTTAGAGCTA 59.516 40.000 0.00 0.00 0.00 3.32
2868 2968 4.287067 TGATGGTTGTCTTTCCTTAGAGCT 59.713 41.667 0.00 0.00 0.00 4.09
2869 2969 4.579869 TGATGGTTGTCTTTCCTTAGAGC 58.420 43.478 0.00 0.00 0.00 4.09
2870 2970 6.404074 GCAATGATGGTTGTCTTTCCTTAGAG 60.404 42.308 0.00 0.00 0.00 2.43
2871 2971 5.415701 GCAATGATGGTTGTCTTTCCTTAGA 59.584 40.000 0.00 0.00 0.00 2.10
2872 2972 5.183713 TGCAATGATGGTTGTCTTTCCTTAG 59.816 40.000 0.00 0.00 0.00 2.18
2873 2973 5.076182 TGCAATGATGGTTGTCTTTCCTTA 58.924 37.500 0.00 0.00 0.00 2.69
2874 2974 3.896888 TGCAATGATGGTTGTCTTTCCTT 59.103 39.130 0.00 0.00 0.00 3.36
2875 2975 3.499338 TGCAATGATGGTTGTCTTTCCT 58.501 40.909 0.00 0.00 0.00 3.36
2876 2976 3.940209 TGCAATGATGGTTGTCTTTCC 57.060 42.857 0.00 0.00 0.00 3.13
2877 2977 4.151157 GCTTTGCAATGATGGTTGTCTTTC 59.849 41.667 15.97 0.00 0.00 2.62
2878 2978 4.060205 GCTTTGCAATGATGGTTGTCTTT 58.940 39.130 15.97 0.00 0.00 2.52
2879 2979 3.069872 TGCTTTGCAATGATGGTTGTCTT 59.930 39.130 15.97 0.00 34.76 3.01
2880 2980 2.629137 TGCTTTGCAATGATGGTTGTCT 59.371 40.909 15.97 0.00 34.76 3.41
2881 2981 3.029320 TGCTTTGCAATGATGGTTGTC 57.971 42.857 15.97 0.00 34.76 3.18
2882 2982 3.688694 ATGCTTTGCAATGATGGTTGT 57.311 38.095 15.97 0.00 43.62 3.32
2883 2983 3.372822 GGAATGCTTTGCAATGATGGTTG 59.627 43.478 15.97 0.00 43.62 3.77
2884 2984 3.602483 GGAATGCTTTGCAATGATGGTT 58.398 40.909 15.97 4.52 43.62 3.67
2885 2985 2.093341 GGGAATGCTTTGCAATGATGGT 60.093 45.455 15.97 0.00 43.62 3.55
2886 2986 2.557317 GGGAATGCTTTGCAATGATGG 58.443 47.619 15.97 0.00 43.62 3.51
2887 2987 2.159212 TCGGGAATGCTTTGCAATGATG 60.159 45.455 15.97 1.22 43.62 3.07
2888 2988 2.101783 TCGGGAATGCTTTGCAATGAT 58.898 42.857 15.97 4.41 43.62 2.45
2889 2989 1.543607 TCGGGAATGCTTTGCAATGA 58.456 45.000 15.97 2.31 43.62 2.57
2890 2990 2.094597 TCTTCGGGAATGCTTTGCAATG 60.095 45.455 0.00 3.50 43.62 2.82
2891 2991 2.170166 TCTTCGGGAATGCTTTGCAAT 58.830 42.857 0.00 0.00 43.62 3.56
2892 2992 1.614996 TCTTCGGGAATGCTTTGCAA 58.385 45.000 0.00 0.00 43.62 4.08
2893 2993 1.614996 TTCTTCGGGAATGCTTTGCA 58.385 45.000 6.20 0.00 44.86 4.08
2894 2994 2.723124 TTTCTTCGGGAATGCTTTGC 57.277 45.000 0.00 0.00 33.53 3.68
2895 2995 4.176271 GGAATTTCTTCGGGAATGCTTTG 58.824 43.478 0.00 0.00 33.53 2.77
2896 2996 3.831911 TGGAATTTCTTCGGGAATGCTTT 59.168 39.130 0.00 0.00 33.53 3.51
2897 2997 3.430453 TGGAATTTCTTCGGGAATGCTT 58.570 40.909 0.00 0.00 33.53 3.91
2898 2998 3.019564 CTGGAATTTCTTCGGGAATGCT 58.980 45.455 0.00 0.00 33.53 3.79
2899 2999 2.480244 GCTGGAATTTCTTCGGGAATGC 60.480 50.000 0.00 0.00 33.53 3.56
2900 3000 3.019564 AGCTGGAATTTCTTCGGGAATG 58.980 45.455 0.00 0.00 33.53 2.67
2901 3001 3.019564 CAGCTGGAATTTCTTCGGGAAT 58.980 45.455 5.57 0.00 33.53 3.01
2902 3002 2.436417 CAGCTGGAATTTCTTCGGGAA 58.564 47.619 5.57 0.00 31.75 3.97
2903 3003 1.950484 GCAGCTGGAATTTCTTCGGGA 60.950 52.381 17.12 0.00 31.75 5.14
2904 3004 0.453390 GCAGCTGGAATTTCTTCGGG 59.547 55.000 17.12 0.00 31.75 5.14
2905 3005 1.131883 CTGCAGCTGGAATTTCTTCGG 59.868 52.381 17.12 0.00 31.75 4.30
2906 3006 1.467035 GCTGCAGCTGGAATTTCTTCG 60.467 52.381 31.33 0.00 38.21 3.79
2907 3007 1.467035 CGCTGCAGCTGGAATTTCTTC 60.467 52.381 34.22 3.10 39.32 2.87
2908 3008 0.524862 CGCTGCAGCTGGAATTTCTT 59.475 50.000 34.22 0.00 39.32 2.52
2909 3009 0.321919 TCGCTGCAGCTGGAATTTCT 60.322 50.000 34.22 0.00 39.32 2.52
2910 3010 0.179179 GTCGCTGCAGCTGGAATTTC 60.179 55.000 34.22 11.01 39.32 2.17
2911 3011 0.607489 AGTCGCTGCAGCTGGAATTT 60.607 50.000 34.22 12.61 39.32 1.82
2912 3012 0.250234 TAGTCGCTGCAGCTGGAATT 59.750 50.000 34.22 18.61 39.32 2.17
2913 3013 0.250234 TTAGTCGCTGCAGCTGGAAT 59.750 50.000 34.22 25.52 39.32 3.01
2914 3014 0.250234 ATTAGTCGCTGCAGCTGGAA 59.750 50.000 34.22 22.34 39.32 3.53
2915 3015 0.460811 CATTAGTCGCTGCAGCTGGA 60.461 55.000 34.22 23.00 39.32 3.86
2916 3016 0.460811 TCATTAGTCGCTGCAGCTGG 60.461 55.000 34.22 21.04 39.32 4.85
2917 3017 1.362768 TTCATTAGTCGCTGCAGCTG 58.637 50.000 34.22 26.49 39.32 4.24
2918 3018 2.099141 TTTCATTAGTCGCTGCAGCT 57.901 45.000 34.22 19.82 39.32 4.24
2919 3019 3.103738 CAATTTCATTAGTCGCTGCAGC 58.896 45.455 29.12 29.12 37.78 5.25
2920 3020 3.103738 GCAATTTCATTAGTCGCTGCAG 58.896 45.455 10.11 10.11 0.00 4.41
2921 3021 2.749076 AGCAATTTCATTAGTCGCTGCA 59.251 40.909 0.00 0.00 0.00 4.41
2922 3022 3.181507 TGAGCAATTTCATTAGTCGCTGC 60.182 43.478 0.00 0.00 0.00 5.25
2923 3023 4.604843 TGAGCAATTTCATTAGTCGCTG 57.395 40.909 0.00 0.00 0.00 5.18
2924 3024 4.937620 TCTTGAGCAATTTCATTAGTCGCT 59.062 37.500 0.00 0.00 0.00 4.93
2925 3025 5.024555 GTCTTGAGCAATTTCATTAGTCGC 58.975 41.667 0.00 0.00 0.00 5.19
2926 3026 5.062183 TCGTCTTGAGCAATTTCATTAGTCG 59.938 40.000 0.00 0.00 0.00 4.18
2927 3027 6.408858 TCGTCTTGAGCAATTTCATTAGTC 57.591 37.500 0.00 0.00 0.00 2.59
2928 3028 6.414408 CTCGTCTTGAGCAATTTCATTAGT 57.586 37.500 0.00 0.00 38.03 2.24
2942 3042 1.071542 TCAACCATTGGCTCGTCTTGA 59.928 47.619 1.54 1.35 0.00 3.02
2943 3043 1.522668 TCAACCATTGGCTCGTCTTG 58.477 50.000 1.54 0.00 0.00 3.02
2944 3044 2.086869 CATCAACCATTGGCTCGTCTT 58.913 47.619 1.54 0.00 0.00 3.01
2945 3045 1.003580 ACATCAACCATTGGCTCGTCT 59.996 47.619 1.54 0.00 0.00 4.18
2946 3046 1.398390 GACATCAACCATTGGCTCGTC 59.602 52.381 1.54 0.00 0.00 4.20
2947 3047 1.453155 GACATCAACCATTGGCTCGT 58.547 50.000 1.54 0.00 0.00 4.18
2948 3048 0.374758 CGACATCAACCATTGGCTCG 59.625 55.000 1.54 0.00 0.00 5.03
2949 3049 1.398390 GACGACATCAACCATTGGCTC 59.602 52.381 1.54 0.00 0.00 4.70
2950 3050 1.271325 TGACGACATCAACCATTGGCT 60.271 47.619 1.54 0.00 33.02 4.75
2951 3051 1.164411 TGACGACATCAACCATTGGC 58.836 50.000 1.54 0.00 33.02 4.52
2960 3060 2.009051 GGTGATGCATTGACGACATCA 58.991 47.619 0.00 0.98 45.87 3.07
2961 3061 2.009051 TGGTGATGCATTGACGACATC 58.991 47.619 0.00 0.00 40.48 3.06
2962 3062 2.112380 TGGTGATGCATTGACGACAT 57.888 45.000 0.00 0.00 0.00 3.06
2963 3063 2.009051 GATGGTGATGCATTGACGACA 58.991 47.619 0.00 0.00 0.00 4.35
2964 3064 2.009051 TGATGGTGATGCATTGACGAC 58.991 47.619 0.00 0.00 0.00 4.34
2965 3065 2.009051 GTGATGGTGATGCATTGACGA 58.991 47.619 0.00 0.00 0.00 4.20
2966 3066 1.738908 TGTGATGGTGATGCATTGACG 59.261 47.619 0.00 0.00 0.00 4.35
2967 3067 3.243301 GGATGTGATGGTGATGCATTGAC 60.243 47.826 0.00 0.46 0.00 3.18
2968 3068 2.953648 GGATGTGATGGTGATGCATTGA 59.046 45.455 0.00 0.00 0.00 2.57
2969 3069 2.691011 TGGATGTGATGGTGATGCATTG 59.309 45.455 0.00 0.00 0.00 2.82
2970 3070 2.956333 CTGGATGTGATGGTGATGCATT 59.044 45.455 0.00 0.00 0.00 3.56
2971 3071 2.173996 TCTGGATGTGATGGTGATGCAT 59.826 45.455 0.00 0.00 0.00 3.96
2972 3072 1.560611 TCTGGATGTGATGGTGATGCA 59.439 47.619 0.00 0.00 0.00 3.96
2973 3073 1.945394 GTCTGGATGTGATGGTGATGC 59.055 52.381 0.00 0.00 0.00 3.91
2974 3074 3.118519 TGAGTCTGGATGTGATGGTGATG 60.119 47.826 0.00 0.00 0.00 3.07
2975 3075 3.109928 TGAGTCTGGATGTGATGGTGAT 58.890 45.455 0.00 0.00 0.00 3.06
2976 3076 2.539302 TGAGTCTGGATGTGATGGTGA 58.461 47.619 0.00 0.00 0.00 4.02
2977 3077 3.339253 TTGAGTCTGGATGTGATGGTG 57.661 47.619 0.00 0.00 0.00 4.17
2978 3078 4.226846 AGAATTGAGTCTGGATGTGATGGT 59.773 41.667 0.00 0.00 0.00 3.55
2979 3079 4.778579 AGAATTGAGTCTGGATGTGATGG 58.221 43.478 0.00 0.00 0.00 3.51
2980 3080 7.215085 TGATAGAATTGAGTCTGGATGTGATG 58.785 38.462 0.00 0.00 0.00 3.07
2981 3081 7.289549 TCTGATAGAATTGAGTCTGGATGTGAT 59.710 37.037 0.00 0.00 0.00 3.06
2982 3082 6.608808 TCTGATAGAATTGAGTCTGGATGTGA 59.391 38.462 0.00 0.00 0.00 3.58
2983 3083 6.814043 TCTGATAGAATTGAGTCTGGATGTG 58.186 40.000 0.00 0.00 0.00 3.21
2984 3084 7.289549 TCATCTGATAGAATTGAGTCTGGATGT 59.710 37.037 0.00 0.00 31.48 3.06
2985 3085 7.599621 GTCATCTGATAGAATTGAGTCTGGATG 59.400 40.741 0.00 0.00 0.00 3.51
2986 3086 7.289549 TGTCATCTGATAGAATTGAGTCTGGAT 59.710 37.037 0.00 0.00 0.00 3.41
2987 3087 6.608808 TGTCATCTGATAGAATTGAGTCTGGA 59.391 38.462 0.00 0.00 0.00 3.86
2988 3088 6.700960 GTGTCATCTGATAGAATTGAGTCTGG 59.299 42.308 0.00 0.00 0.00 3.86
2989 3089 7.490840 AGTGTCATCTGATAGAATTGAGTCTG 58.509 38.462 0.00 0.00 0.00 3.51
2990 3090 7.658525 AGTGTCATCTGATAGAATTGAGTCT 57.341 36.000 0.00 0.00 0.00 3.24
2991 3091 9.979578 ATTAGTGTCATCTGATAGAATTGAGTC 57.020 33.333 0.00 0.00 0.00 3.36
3002 3102 9.988815 GTAGGAACAATATTAGTGTCATCTGAT 57.011 33.333 0.00 0.00 0.00 2.90
3003 3103 9.201989 AGTAGGAACAATATTAGTGTCATCTGA 57.798 33.333 0.00 0.00 0.00 3.27
3006 3106 9.694137 GGTAGTAGGAACAATATTAGTGTCATC 57.306 37.037 0.00 0.00 0.00 2.92
3007 3107 9.209048 TGGTAGTAGGAACAATATTAGTGTCAT 57.791 33.333 0.00 0.00 0.00 3.06
3008 3108 8.472413 GTGGTAGTAGGAACAATATTAGTGTCA 58.528 37.037 0.00 0.00 0.00 3.58
3009 3109 8.472413 TGTGGTAGTAGGAACAATATTAGTGTC 58.528 37.037 0.00 0.00 0.00 3.67
3010 3110 8.370266 TGTGGTAGTAGGAACAATATTAGTGT 57.630 34.615 0.00 0.00 0.00 3.55
3011 3111 7.438459 GCTGTGGTAGTAGGAACAATATTAGTG 59.562 40.741 0.00 0.00 0.00 2.74
3012 3112 7.344871 AGCTGTGGTAGTAGGAACAATATTAGT 59.655 37.037 0.00 0.00 0.00 2.24
3013 3113 7.653713 CAGCTGTGGTAGTAGGAACAATATTAG 59.346 40.741 5.25 0.00 0.00 1.73
3014 3114 7.343574 TCAGCTGTGGTAGTAGGAACAATATTA 59.656 37.037 14.67 0.00 0.00 0.98
3015 3115 6.156256 TCAGCTGTGGTAGTAGGAACAATATT 59.844 38.462 14.67 0.00 0.00 1.28
3016 3116 5.661312 TCAGCTGTGGTAGTAGGAACAATAT 59.339 40.000 14.67 0.00 0.00 1.28
3017 3117 5.020795 TCAGCTGTGGTAGTAGGAACAATA 58.979 41.667 14.67 0.00 0.00 1.90
3018 3118 3.838317 TCAGCTGTGGTAGTAGGAACAAT 59.162 43.478 14.67 0.00 0.00 2.71
3019 3119 3.236047 TCAGCTGTGGTAGTAGGAACAA 58.764 45.455 14.67 0.00 0.00 2.83
3020 3120 2.826128 CTCAGCTGTGGTAGTAGGAACA 59.174 50.000 14.67 0.00 0.00 3.18
3021 3121 2.417515 GCTCAGCTGTGGTAGTAGGAAC 60.418 54.545 14.67 0.00 0.00 3.62
3022 3122 1.825474 GCTCAGCTGTGGTAGTAGGAA 59.175 52.381 14.67 0.00 0.00 3.36
3023 3123 1.272480 TGCTCAGCTGTGGTAGTAGGA 60.272 52.381 14.67 0.00 0.00 2.94
3024 3124 1.186200 TGCTCAGCTGTGGTAGTAGG 58.814 55.000 14.67 0.00 0.00 3.18
3025 3125 2.232452 ACTTGCTCAGCTGTGGTAGTAG 59.768 50.000 14.67 2.55 0.00 2.57
3026 3126 2.248248 ACTTGCTCAGCTGTGGTAGTA 58.752 47.619 14.67 0.00 0.00 1.82
3027 3127 1.051812 ACTTGCTCAGCTGTGGTAGT 58.948 50.000 14.67 10.56 0.00 2.73
3028 3128 1.802960 CAACTTGCTCAGCTGTGGTAG 59.197 52.381 14.67 4.56 0.00 3.18
3029 3129 1.882912 CAACTTGCTCAGCTGTGGTA 58.117 50.000 14.67 4.91 0.00 3.25
3030 3130 1.450531 GCAACTTGCTCAGCTGTGGT 61.451 55.000 14.67 1.91 40.96 4.16
3031 3131 1.285023 GCAACTTGCTCAGCTGTGG 59.715 57.895 14.67 9.23 40.96 4.17
3032 3132 4.937781 GCAACTTGCTCAGCTGTG 57.062 55.556 14.67 12.95 40.96 3.66
3041 3141 2.359230 AGGGCTCGAGCAACTTGC 60.359 61.111 36.27 18.94 45.46 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.