Multiple sequence alignment - TraesCS7B01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G183300 chr7B 100.000 8246 0 0 1 8246 290022087 290013842 0.000000e+00 15228.0
1 TraesCS7B01G183300 chr7B 97.468 158 4 0 1373 1530 393400862 393400705 3.790000e-68 270.0
2 TraesCS7B01G183300 chr7B 91.875 160 12 1 8085 8243 654018337 654018496 1.080000e-53 222.0
3 TraesCS7B01G183300 chr7B 96.094 128 4 1 4843 4970 290017117 290016991 3.020000e-49 207.0
4 TraesCS7B01G183300 chr7B 96.094 128 4 1 4971 5097 290017245 290017118 3.020000e-49 207.0
5 TraesCS7B01G183300 chr7D 96.911 6571 142 25 1536 8084 305833764 305827233 0.000000e+00 10953.0
6 TraesCS7B01G183300 chr7D 93.469 1378 71 11 5 1374 305835129 305833763 0.000000e+00 2028.0
7 TraesCS7B01G183300 chr7D 88.281 384 31 9 1 381 282813712 282814084 1.630000e-121 448.0
8 TraesCS7B01G183300 chr7D 87.132 272 29 5 540 808 305834481 305834213 3.740000e-78 303.0
9 TraesCS7B01G183300 chr7D 97.656 128 2 1 4843 4970 305830325 305830199 1.390000e-52 219.0
10 TraesCS7B01G183300 chr7D 97.656 128 2 1 4971 5097 305830453 305830326 1.390000e-52 219.0
11 TraesCS7B01G183300 chr7D 85.593 118 13 3 4367 4481 636752713 636752597 4.040000e-23 121.0
12 TraesCS7B01G183300 chr7D 100.000 29 0 0 6951 6979 177281390 177281362 4.000000e-03 54.7
13 TraesCS7B01G183300 chr7A 97.394 4566 96 16 3185 7738 342613053 342617607 0.000000e+00 7751.0
14 TraesCS7B01G183300 chr7A 94.835 1336 38 9 1806 3135 342610320 342611630 0.000000e+00 2056.0
15 TraesCS7B01G183300 chr7A 93.164 1375 76 11 5 1374 342608340 342609701 0.000000e+00 2002.0
16 TraesCS7B01G183300 chr7A 94.688 320 17 0 7765 8084 342617919 342618238 1.600000e-136 497.0
17 TraesCS7B01G183300 chr7A 90.545 275 23 3 1535 1807 342609701 342609974 2.190000e-95 361.0
18 TraesCS7B01G183300 chr7A 86.029 272 24 12 638 906 342608853 342609113 6.300000e-71 279.0
19 TraesCS7B01G183300 chr7A 96.875 128 3 1 4843 4970 342614838 342614964 6.480000e-51 213.0
20 TraesCS7B01G183300 chr7A 96.094 128 4 1 4971 5097 342614710 342614837 3.020000e-49 207.0
21 TraesCS7B01G183300 chr7A 89.831 59 6 0 7734 7792 342617855 342617913 8.870000e-10 76.8
22 TraesCS7B01G183300 chr3D 88.770 374 37 2 1 374 205229841 205230209 3.510000e-123 453.0
23 TraesCS7B01G183300 chr3D 90.860 186 13 4 1361 1543 595966867 595967051 6.390000e-61 246.0
24 TraesCS7B01G183300 chr3D 86.916 107 13 1 4377 4482 432376972 432376866 1.450000e-22 119.0
25 TraesCS7B01G183300 chr3A 87.798 377 36 7 6 380 265756493 265756125 4.570000e-117 433.0
26 TraesCS7B01G183300 chr3A 87.603 242 29 1 6662 6902 57281227 57281468 6.300000e-71 279.0
27 TraesCS7B01G183300 chr3A 91.099 191 16 1 1355 1544 57300564 57300754 2.950000e-64 257.0
28 TraesCS7B01G183300 chr2A 86.945 383 44 2 1 383 365390343 365389967 7.650000e-115 425.0
29 TraesCS7B01G183300 chr5A 87.268 377 39 6 5 380 218118898 218119266 9.900000e-114 422.0
30 TraesCS7B01G183300 chr5A 85.560 277 40 0 4572 4848 375577782 375577506 2.910000e-74 291.0
31 TraesCS7B01G183300 chr5A 96.203 158 6 0 1373 1530 458198878 458199035 8.210000e-65 259.0
32 TraesCS7B01G183300 chr5A 84.932 219 27 6 5090 5305 375577399 375577184 5.010000e-52 217.0
33 TraesCS7B01G183300 chr5A 86.087 115 13 3 1555 1668 135538593 135538705 4.040000e-23 121.0
34 TraesCS7B01G183300 chr4B 86.753 385 37 8 1 381 347977975 347977601 4.600000e-112 416.0
35 TraesCS7B01G183300 chr4B 90.811 185 16 1 1373 1556 570345797 570345981 6.390000e-61 246.0
36 TraesCS7B01G183300 chr5D 86.316 380 42 6 1 380 414832378 414832009 9.970000e-109 405.0
37 TraesCS7B01G183300 chr5D 84.838 277 42 0 4572 4848 283492146 283491870 6.300000e-71 279.0
38 TraesCS7B01G183300 chr5D 80.645 341 48 15 1337 1671 475152923 475153251 1.780000e-61 248.0
39 TraesCS7B01G183300 chr5D 84.475 219 28 6 5090 5305 283491763 283491548 2.330000e-50 211.0
40 TraesCS7B01G183300 chr5D 84.615 117 18 0 7128 7244 283490071 283489955 5.230000e-22 117.0
41 TraesCS7B01G183300 chr5D 100.000 28 0 0 6952 6979 446705503 446705530 1.500000e-02 52.8
42 TraesCS7B01G183300 chr6D 89.344 244 25 1 6662 6904 365847127 365846884 1.040000e-78 305.0
43 TraesCS7B01G183300 chr6D 94.611 167 9 0 1373 1539 6319373 6319207 8.210000e-65 259.0
44 TraesCS7B01G183300 chr6D 85.841 113 15 1 4376 4487 470532868 470532980 1.450000e-22 119.0
45 TraesCS7B01G183300 chr6D 85.217 115 14 2 4367 4478 129450701 129450587 1.880000e-21 115.0
46 TraesCS7B01G183300 chr6D 100.000 28 0 0 6952 6979 53927866 53927893 1.500000e-02 52.8
47 TraesCS7B01G183300 chr6D 100.000 28 0 0 6952 6979 432233128 432233155 1.500000e-02 52.8
48 TraesCS7B01G183300 chr6A 88.115 244 28 1 6662 6904 506643072 506642829 1.050000e-73 289.0
49 TraesCS7B01G183300 chr6A 85.950 121 11 6 1555 1671 542709363 542709481 3.120000e-24 124.0
50 TraesCS7B01G183300 chr3B 88.136 236 26 2 6670 6904 694031383 694031617 6.300000e-71 279.0
51 TraesCS7B01G183300 chr3B 87.288 118 11 4 1552 1667 688118450 688118335 1.870000e-26 132.0
52 TraesCS7B01G183300 chr3B 87.069 116 12 3 1555 1669 355437332 355437445 2.420000e-25 128.0
53 TraesCS7B01G183300 chr5B 89.035 228 18 6 6680 6903 170585953 170586177 8.150000e-70 276.0
54 TraesCS7B01G183300 chr5B 84.477 277 43 0 4572 4848 321623236 321622960 2.930000e-69 274.0
55 TraesCS7B01G183300 chr5B 84.475 219 28 6 5090 5305 321622852 321622637 2.330000e-50 211.0
56 TraesCS7B01G183300 chr5B 84.615 117 18 0 7128 7244 321621162 321621046 5.230000e-22 117.0
57 TraesCS7B01G183300 chr4A 96.296 162 6 0 1373 1534 30396539 30396700 4.910000e-67 267.0
58 TraesCS7B01G183300 chr1D 87.288 236 26 4 6671 6904 150939269 150939036 4.910000e-67 267.0
59 TraesCS7B01G183300 chr1D 100.000 28 0 0 6952 6979 72350975 72350948 1.500000e-02 52.8
60 TraesCS7B01G183300 chr1D 100.000 28 0 0 6952 6979 348868392 348868419 1.500000e-02 52.8
61 TraesCS7B01G183300 chr1B 86.864 236 27 4 6671 6904 231643211 231642978 2.280000e-65 261.0
62 TraesCS7B01G183300 chr1B 86.266 233 23 9 1363 1589 530661165 530660936 2.300000e-60 244.0
63 TraesCS7B01G183300 chr2D 87.931 116 13 1 4363 4477 220974742 220974857 1.440000e-27 135.0
64 TraesCS7B01G183300 chr2D 85.217 115 14 2 4367 4478 75633177 75633063 1.880000e-21 115.0
65 TraesCS7B01G183300 chr2B 86.957 115 10 5 1555 1667 699045334 699045223 3.120000e-24 124.0
66 TraesCS7B01G183300 chr6B 85.593 118 13 4 1552 1667 30348257 30348372 4.040000e-23 121.0
67 TraesCS7B01G183300 chr6B 85.841 113 15 1 4376 4487 720642510 720642398 1.450000e-22 119.0
68 TraesCS7B01G183300 chr6B 100.000 28 0 0 6952 6979 361230616 361230643 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G183300 chr7B 290013842 290022087 8245 True 15228.000000 15228 100.000000 1 8246 1 chr7B.!!$R1 8245
1 TraesCS7B01G183300 chr7D 305827233 305835129 7896 True 2744.400000 10953 94.564800 5 8084 5 chr7D.!!$R3 8079
2 TraesCS7B01G183300 chr7A 342608340 342618238 9898 False 1493.644444 7751 93.272778 5 8084 9 chr7A.!!$F1 8079
3 TraesCS7B01G183300 chr5A 375577184 375577782 598 True 254.000000 291 85.246000 4572 5305 2 chr5A.!!$R1 733
4 TraesCS7B01G183300 chr5D 283489955 283492146 2191 True 202.333333 279 84.642667 4572 7244 3 chr5D.!!$R2 2672
5 TraesCS7B01G183300 chr5B 321621046 321623236 2190 True 200.666667 274 84.522333 4572 7244 3 chr5B.!!$R1 2672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 293 0.322098 CATGCCGTGTTGTCCCCTTA 60.322 55.0 0.00 0.0 0.00 2.69 F
362 367 0.484212 CCCATGCCCCATAGGTGATT 59.516 55.0 0.00 0.0 38.26 2.57 F
1382 1392 0.676736 GCTCCATCTTACTCCCTCCG 59.323 60.0 0.00 0.0 0.00 4.63 F
2324 2696 1.078759 CTTGCCGCCTAGTCTTGTCG 61.079 60.0 0.00 0.0 0.00 4.35 F
3242 4990 0.763652 TGTTGCCCCATGTTGCATTT 59.236 45.0 7.16 0.0 37.33 2.32 F
3864 5612 0.033699 AAATCTCAGGGCCAGCCTTC 60.034 55.0 6.18 0.0 36.10 3.46 F
3909 5657 1.981256 AACTGTTCCAAGGCGTCATT 58.019 45.0 0.00 0.0 0.00 2.57 F
4216 5965 2.735663 GAGCAATAGCCAGTCATCATCG 59.264 50.0 0.00 0.0 43.56 3.84 F
5768 7635 2.094894 GGTTCTTGATGCTGATGTGACG 59.905 50.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2309 0.386113 GAGAGATACGCCTGACACCC 59.614 60.000 0.00 0.00 0.00 4.61 R
2373 2745 1.069049 AGGCAATAATTTCCCGCATGC 59.931 47.619 7.91 7.91 0.00 4.06 R
2407 2779 0.109781 GGCGTGAATCACATTTGCGT 60.110 50.000 14.24 0.00 33.40 5.24 R
3362 5110 0.315251 TCCGAGAACACTCTGCACAG 59.685 55.000 0.00 0.00 29.54 3.66 R
5072 6825 1.267806 AGATCAAAACAGGCAGCAACG 59.732 47.619 0.00 0.00 0.00 4.10 R
5399 7166 3.649073 TGGAACTGCATATCCGATAACG 58.351 45.455 11.95 0.00 38.63 3.18 R
5573 7437 3.988379 GTGAAAGCACACCTGAAATCA 57.012 42.857 0.00 0.00 44.51 2.57 R
6000 7918 1.872237 GCAGTTCTACGTGGACAGCAA 60.872 52.381 0.00 0.00 0.00 3.91 R
7744 9991 1.009829 AGCGAAATAGGCTTTCAGCG 58.990 50.000 0.00 0.00 43.62 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.441496 AATGACTGTTTTGCCACTGTG 57.559 42.857 0.00 0.00 0.00 3.66
107 108 4.450976 CAAGGGGTTCATACATTCGATCA 58.549 43.478 0.00 0.00 0.00 2.92
269 274 2.682155 AAAAGAGAGAGTCCATCGCC 57.318 50.000 0.00 0.00 0.00 5.54
274 279 1.596477 GAGAGTCCATCGCCATGCC 60.596 63.158 0.00 0.00 0.00 4.40
275 280 2.969238 GAGTCCATCGCCATGCCG 60.969 66.667 0.00 0.00 0.00 5.69
277 282 3.576356 GTCCATCGCCATGCCGTG 61.576 66.667 0.00 0.00 0.00 4.94
278 283 4.094646 TCCATCGCCATGCCGTGT 62.095 61.111 0.00 0.00 0.00 4.49
279 284 3.133464 CCATCGCCATGCCGTGTT 61.133 61.111 0.00 0.00 0.00 3.32
280 285 2.100797 CATCGCCATGCCGTGTTG 59.899 61.111 0.00 0.00 0.00 3.33
282 287 2.398554 ATCGCCATGCCGTGTTGTC 61.399 57.895 0.00 0.00 0.00 3.18
284 289 3.747976 GCCATGCCGTGTTGTCCC 61.748 66.667 0.00 0.00 0.00 4.46
285 290 3.061848 CCATGCCGTGTTGTCCCC 61.062 66.667 0.00 0.00 0.00 4.81
286 291 2.034066 CATGCCGTGTTGTCCCCT 59.966 61.111 0.00 0.00 0.00 4.79
287 292 1.603455 CATGCCGTGTTGTCCCCTT 60.603 57.895 0.00 0.00 0.00 3.95
288 293 0.322098 CATGCCGTGTTGTCCCCTTA 60.322 55.000 0.00 0.00 0.00 2.69
306 311 4.520492 CCCTTATGTTTCTGCTCTTTGTGT 59.480 41.667 0.00 0.00 0.00 3.72
314 319 2.159014 TCTGCTCTTTGTGTAACGTGGT 60.159 45.455 0.00 0.00 42.39 4.16
333 338 2.034999 GTCCCCATGCCGAACCAA 59.965 61.111 0.00 0.00 0.00 3.67
362 367 0.484212 CCCATGCCCCATAGGTGATT 59.516 55.000 0.00 0.00 38.26 2.57
384 389 3.834447 CTTCCACGCCGACACGTCA 62.834 63.158 0.00 0.00 46.34 4.35
432 437 4.379339 TTTGTTTTCTGTTGTGGGCTAC 57.621 40.909 0.00 0.00 0.00 3.58
453 458 2.843113 CCTGGATCCTTCCTTCAAGAGT 59.157 50.000 14.23 0.00 43.07 3.24
571 576 7.599245 GTGTGCTTCTAGTATGACTAAACTTGT 59.401 37.037 0.00 0.00 29.00 3.16
637 642 5.938322 ACAACTTGTCACACAACAACTAAG 58.062 37.500 0.00 0.00 35.39 2.18
671 676 6.127758 ACAAAGATATCCATGTGCGCTTTTTA 60.128 34.615 9.73 0.00 0.00 1.52
702 707 2.184385 CTTGCTGCCAATAAAGCGAG 57.816 50.000 0.00 0.00 42.87 5.03
757 762 8.075574 CAGCTTGTCACATAACAACTAATTTCA 58.924 33.333 0.00 0.00 35.39 2.69
782 787 3.943958 CACAAAGATATCCATGTGCGTG 58.056 45.455 19.62 6.95 37.03 5.34
783 788 2.355756 ACAAAGATATCCATGTGCGTGC 59.644 45.455 9.53 0.00 0.00 5.34
818 825 4.280677 TGCTAAACTTGCTGCCAATAAAGT 59.719 37.500 0.00 0.00 34.40 2.66
842 850 6.969473 GTGAAGAGCATATTAGAAAGCCAAAC 59.031 38.462 0.00 0.00 0.00 2.93
894 902 5.907866 TTCGTCGCATAAGGATATCCATA 57.092 39.130 23.81 16.46 38.89 2.74
940 948 5.896073 ACTCCCTTCACCTATAAATCAGG 57.104 43.478 0.00 0.00 39.25 3.86
986 994 9.107177 CACTCAATATCTATATCCTTCCATTGC 57.893 37.037 0.00 0.00 0.00 3.56
1066 1074 1.535649 CCAAGCGTGAACAATGCAACA 60.536 47.619 0.00 0.00 43.85 3.33
1115 1123 3.639672 TGCAGATCTCAATCCACATGT 57.360 42.857 0.00 0.00 31.78 3.21
1117 1125 3.692593 TGCAGATCTCAATCCACATGTTG 59.307 43.478 0.00 0.00 31.78 3.33
1167 1175 8.378115 ACCATGATTTCCATTTTCTATTCCAA 57.622 30.769 0.00 0.00 31.94 3.53
1171 1179 9.880157 ATGATTTCCATTTTCTATTCCAACTTG 57.120 29.630 0.00 0.00 29.34 3.16
1173 1181 7.610580 TTTCCATTTTCTATTCCAACTTGGT 57.389 32.000 7.72 0.00 39.03 3.67
1266 1274 7.765695 AATTAGAAGATTTTCCACAAGAGCA 57.234 32.000 0.00 0.00 33.64 4.26
1281 1289 6.097356 CACAAGAGCATGCATTGAATTAAGT 58.903 36.000 30.83 12.46 0.00 2.24
1341 1349 7.889873 TGGAAAAAGGACTAAAAGTTGATCA 57.110 32.000 0.00 0.00 0.00 2.92
1343 1351 8.359642 TGGAAAAAGGACTAAAAGTTGATCATG 58.640 33.333 0.00 0.00 0.00 3.07
1378 1388 4.755266 TTTAGTGCTCCATCTTACTCCC 57.245 45.455 0.00 0.00 0.00 4.30
1379 1389 2.559381 AGTGCTCCATCTTACTCCCT 57.441 50.000 0.00 0.00 0.00 4.20
1380 1390 2.393646 AGTGCTCCATCTTACTCCCTC 58.606 52.381 0.00 0.00 0.00 4.30
1381 1391 1.414550 GTGCTCCATCTTACTCCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
1382 1392 0.676736 GCTCCATCTTACTCCCTCCG 59.323 60.000 0.00 0.00 0.00 4.63
1383 1393 2.030045 GCTCCATCTTACTCCCTCCGT 61.030 57.143 0.00 0.00 0.00 4.69
1384 1394 2.389715 CTCCATCTTACTCCCTCCGTT 58.610 52.381 0.00 0.00 0.00 4.44
1385 1395 2.362717 CTCCATCTTACTCCCTCCGTTC 59.637 54.545 0.00 0.00 0.00 3.95
1386 1396 1.413077 CCATCTTACTCCCTCCGTTCC 59.587 57.143 0.00 0.00 0.00 3.62
1387 1397 2.389715 CATCTTACTCCCTCCGTTCCT 58.610 52.381 0.00 0.00 0.00 3.36
1388 1398 3.563223 CATCTTACTCCCTCCGTTCCTA 58.437 50.000 0.00 0.00 0.00 2.94
1389 1399 3.744940 TCTTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
1390 1400 4.051661 TCTTACTCCCTCCGTTCCTAAA 57.948 45.455 0.00 0.00 0.00 1.85
1391 1401 4.617593 TCTTACTCCCTCCGTTCCTAAAT 58.382 43.478 0.00 0.00 0.00 1.40
1392 1402 5.769835 TCTTACTCCCTCCGTTCCTAAATA 58.230 41.667 0.00 0.00 0.00 1.40
1393 1403 6.379579 TCTTACTCCCTCCGTTCCTAAATAT 58.620 40.000 0.00 0.00 0.00 1.28
1394 1404 7.529555 TCTTACTCCCTCCGTTCCTAAATATA 58.470 38.462 0.00 0.00 0.00 0.86
1395 1405 7.668886 TCTTACTCCCTCCGTTCCTAAATATAG 59.331 40.741 0.00 0.00 0.00 1.31
1418 1428 7.736447 AGGTCTTTGTAGAGATTTCAACAAG 57.264 36.000 0.00 0.00 33.70 3.16
1419 1429 7.283329 AGGTCTTTGTAGAGATTTCAACAAGT 58.717 34.615 0.00 0.00 33.70 3.16
1420 1430 7.227512 AGGTCTTTGTAGAGATTTCAACAAGTG 59.772 37.037 0.00 0.00 33.70 3.16
1421 1431 7.226720 GGTCTTTGTAGAGATTTCAACAAGTGA 59.773 37.037 0.00 0.00 33.70 3.41
1422 1432 8.064814 GTCTTTGTAGAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
1423 1433 7.987458 TCTTTGTAGAGATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
1424 1434 9.261180 CTTTGTAGAGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
1425 1435 9.778741 TTTGTAGAGATTTCAACAAGTGACTAT 57.221 29.630 0.00 0.00 35.39 2.12
1430 1440 9.737427 AGAGATTTCAACAAGTGACTATATACG 57.263 33.333 0.00 0.00 35.39 3.06
1431 1441 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
1432 1442 8.692710 AGATTTCAACAAGTGACTATATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
1433 1443 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
1434 1444 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
1435 1445 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
1436 1446 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
1437 1447 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
1438 1448 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
1439 1449 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
1440 1450 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
1441 1451 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
1442 1452 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
1443 1453 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
1444 1454 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
1445 1455 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
1446 1456 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
1447 1457 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
1448 1458 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
1449 1459 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1450 1460 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1451 1461 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1452 1462 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1453 1463 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1496 1506 7.962964 ACATCCGTATATGGTAGTTCATTTG 57.037 36.000 10.85 0.34 0.00 2.32
1497 1507 7.732025 ACATCCGTATATGGTAGTTCATTTGA 58.268 34.615 10.85 0.00 0.00 2.69
1498 1508 8.208224 ACATCCGTATATGGTAGTTCATTTGAA 58.792 33.333 10.85 0.00 0.00 2.69
1499 1509 9.051679 CATCCGTATATGGTAGTTCATTTGAAA 57.948 33.333 10.85 0.00 35.58 2.69
1500 1510 9.793259 ATCCGTATATGGTAGTTCATTTGAAAT 57.207 29.630 10.85 0.00 35.58 2.17
1501 1511 9.268268 TCCGTATATGGTAGTTCATTTGAAATC 57.732 33.333 10.85 0.00 35.58 2.17
1502 1512 9.273016 CCGTATATGGTAGTTCATTTGAAATCT 57.727 33.333 2.46 0.00 35.58 2.40
1528 1538 9.211485 TCTAAAAAGACTTGTATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
1529 1539 9.211485 CTAAAAAGACTTGTATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
1530 1540 8.454570 AAAAAGACTTGTATTTAGGAACGGAA 57.545 30.769 0.00 0.00 0.00 4.30
1531 1541 7.668525 AAAGACTTGTATTTAGGAACGGAAG 57.331 36.000 0.00 0.00 0.00 3.46
1532 1542 6.600882 AGACTTGTATTTAGGAACGGAAGA 57.399 37.500 0.00 0.00 0.00 2.87
1533 1543 7.001099 AGACTTGTATTTAGGAACGGAAGAA 57.999 36.000 0.00 0.00 0.00 2.52
1534 1544 7.447594 AGACTTGTATTTAGGAACGGAAGAAA 58.552 34.615 0.00 0.00 0.00 2.52
1659 1672 2.393646 TGACAAAAGTTTTGGGAGGGG 58.606 47.619 27.46 5.79 0.00 4.79
1670 1683 1.627847 TGGGAGGGGGAGAGTATGTA 58.372 55.000 0.00 0.00 0.00 2.29
1807 1822 1.303561 TGCCACCTGCTGACAATCC 60.304 57.895 0.00 0.00 42.00 3.01
1842 2204 2.917227 TCTCACTCCCACGCAGCA 60.917 61.111 0.00 0.00 0.00 4.41
1939 2309 2.203252 AGCCACACTGCACCACTG 60.203 61.111 0.00 0.00 0.00 3.66
2116 2488 2.681778 CCACCTCCTGCGACTCCT 60.682 66.667 0.00 0.00 0.00 3.69
2282 2654 4.549516 GGTACGTCGCCTCGCCTC 62.550 72.222 0.00 0.00 0.00 4.70
2324 2696 1.078759 CTTGCCGCCTAGTCTTGTCG 61.079 60.000 0.00 0.00 0.00 4.35
2373 2745 6.630444 ATCTTTCCGGATGAGAATTTGATG 57.370 37.500 18.60 0.00 0.00 3.07
2398 2770 1.602377 CGGGAAATTATTGCCTCGGTC 59.398 52.381 1.46 0.00 44.38 4.79
2407 2779 8.918202 AAATTATTGCCTCGGTCATTTAGATA 57.082 30.769 0.00 0.00 0.00 1.98
2449 2821 5.437289 TTGTGTTCTCATGTGGACATTTC 57.563 39.130 11.89 0.92 33.61 2.17
2614 2986 8.322906 TGTTGAACAGTCCTACTTAATCAATG 57.677 34.615 0.00 0.00 29.84 2.82
2689 3061 3.623510 GGCATGTGGCTCTTAAAGACTAC 59.376 47.826 0.00 0.00 44.01 2.73
2690 3062 4.508662 GCATGTGGCTCTTAAAGACTACT 58.491 43.478 0.00 0.00 40.25 2.57
2691 3063 5.395324 GGCATGTGGCTCTTAAAGACTACTA 60.395 44.000 0.00 0.00 44.01 1.82
2736 3110 9.640963 TTGGATTTTTCTTTTTAACTCGTTCAA 57.359 25.926 0.00 0.00 0.00 2.69
2779 3153 5.181433 GCTTCAGTACACCCCTTTAGAAAAG 59.819 44.000 0.00 0.00 0.00 2.27
2804 3178 1.668419 GATTTCGGATGTGGTGGAGG 58.332 55.000 0.00 0.00 0.00 4.30
2861 3236 3.965694 AGTAGAGTCTATCCACGTGGTT 58.034 45.455 32.74 26.83 36.34 3.67
2938 3313 8.626526 ACAACTAAACAAAGTAATACAACCAGG 58.373 33.333 0.00 0.00 0.00 4.45
3051 3426 1.095600 CATGTCTCAGCTGCAATGCT 58.904 50.000 9.47 0.00 45.18 3.79
3096 3471 4.053295 ACGTCCGATTAAACCCATATTCG 58.947 43.478 0.00 0.00 0.00 3.34
3242 4990 0.763652 TGTTGCCCCATGTTGCATTT 59.236 45.000 7.16 0.00 37.33 2.32
3264 5012 4.081406 TGTTCCATGATCTCTTTTGGTGG 58.919 43.478 0.00 0.00 0.00 4.61
3362 5110 4.164294 GCAATTGATGAGTTTCTGCTGTC 58.836 43.478 10.34 0.00 0.00 3.51
3549 5297 0.179086 TCACGCAGTTCAACTCAGCA 60.179 50.000 1.18 0.00 41.61 4.41
3747 5495 9.636879 ATCTACTGATGATCATAATTTGTCTCG 57.363 33.333 8.54 0.00 0.00 4.04
3844 5592 4.041567 TGAATTTCACTAAGCCCTCTGTGA 59.958 41.667 0.00 0.00 37.62 3.58
3850 5598 4.287067 TCACTAAGCCCTCTGTGAAAATCT 59.713 41.667 0.00 0.00 36.64 2.40
3864 5612 0.033699 AAATCTCAGGGCCAGCCTTC 60.034 55.000 6.18 0.00 36.10 3.46
3909 5657 1.981256 AACTGTTCCAAGGCGTCATT 58.019 45.000 0.00 0.00 0.00 2.57
3911 5659 3.134574 ACTGTTCCAAGGCGTCATTAA 57.865 42.857 0.00 0.00 0.00 1.40
3915 5663 5.527582 ACTGTTCCAAGGCGTCATTAATATC 59.472 40.000 0.00 0.00 0.00 1.63
4055 5804 5.542616 AGAGATGCTCAGAAATTTTCACG 57.457 39.130 11.53 2.61 32.06 4.35
4200 5949 9.985730 AACTTTGATTTTGATTCTTATGAGCAA 57.014 25.926 0.00 0.00 0.00 3.91
4216 5965 2.735663 GAGCAATAGCCAGTCATCATCG 59.264 50.000 0.00 0.00 43.56 3.84
4271 6021 8.613613 TGTTTCATATTTCATATGTTTGTCGC 57.386 30.769 1.90 0.00 42.49 5.19
4634 6384 5.545063 TCGAGGAGCATAATGTTATGGAA 57.455 39.130 13.08 0.00 40.61 3.53
5046 6799 9.705290 GAACCATCATTTATTACACCAAAAAGT 57.295 29.630 0.00 0.00 0.00 2.66
5072 6825 5.119931 TCTGTTGAATGCATTTACACCAC 57.880 39.130 14.33 5.16 0.00 4.16
5399 7166 5.796424 TCGTAAGGAAGGGGATACAATAC 57.204 43.478 0.00 0.00 36.27 1.89
5473 7337 8.001881 TCTTAAGAGTTTTGTTATTGTTGCCA 57.998 30.769 0.00 0.00 0.00 4.92
5573 7437 5.188948 GGGAATTACCAAAAAGCCAATACCT 59.811 40.000 0.21 0.00 41.20 3.08
5768 7635 2.094894 GGTTCTTGATGCTGATGTGACG 59.905 50.000 0.00 0.00 0.00 4.35
5861 7775 3.248602 CCTTCTTCAGGTGTTTCACTTCG 59.751 47.826 0.06 0.00 37.99 3.79
5997 7915 3.623453 GCTTCTATGTTCCCTCTGCCTTT 60.623 47.826 0.00 0.00 0.00 3.11
5998 7916 3.914426 TCTATGTTCCCTCTGCCTTTC 57.086 47.619 0.00 0.00 0.00 2.62
5999 7917 3.454858 TCTATGTTCCCTCTGCCTTTCT 58.545 45.455 0.00 0.00 0.00 2.52
6000 7918 3.846588 TCTATGTTCCCTCTGCCTTTCTT 59.153 43.478 0.00 0.00 0.00 2.52
6192 8119 2.351418 TGTTGTTCAACAGACTGAAGCG 59.649 45.455 10.08 0.00 36.01 4.68
6428 8355 5.581126 TCTCATGGTAATGTCCAAAATGC 57.419 39.130 0.00 0.00 41.09 3.56
6664 8648 8.506168 TTGAGTTTGATTTGACTGTCTTTAGT 57.494 30.769 9.51 0.00 0.00 2.24
6713 8697 0.623617 GGGAGGTTGGGGTAGACCAT 60.624 60.000 0.21 0.00 40.91 3.55
6748 8732 5.299279 GGAGGAGTCTCTAAAGAGTGATCTG 59.701 48.000 6.87 0.00 42.60 2.90
6912 8896 5.335583 GCATTGCTGTTGTTGTCCTATGTTA 60.336 40.000 0.16 0.00 0.00 2.41
6944 8928 9.817809 CTTAGAACAAGGCTTATATTAGTGTGA 57.182 33.333 0.00 0.00 0.00 3.58
7306 9296 7.169645 GCAATCAGTAATGTTTTGCTTCAGAAA 59.830 33.333 19.10 0.00 39.56 2.52
7363 9353 3.439825 TGCAGCAATACAGTTGGTACATG 59.560 43.478 0.00 0.00 39.30 3.21
7401 9391 9.838339 CTGGTATCCTATAAATTCACTTTGAGT 57.162 33.333 0.00 0.00 0.00 3.41
7582 9573 1.613925 GCACTTCTCCACCCTTTTTCC 59.386 52.381 0.00 0.00 0.00 3.13
7732 9723 3.851098 TGTAAAACCTTGCGTTGCTTTT 58.149 36.364 0.00 0.00 33.93 2.27
7733 9724 4.246458 TGTAAAACCTTGCGTTGCTTTTT 58.754 34.783 0.00 0.00 33.93 1.94
7817 10097 4.261801 GGGAGATTCCACAAATTCTTCGA 58.738 43.478 0.00 0.00 38.64 3.71
7982 10262 5.596268 TTTGACATTCAGAGACATGTTCG 57.404 39.130 0.00 0.00 33.62 3.95
8046 10326 1.202348 CGTCTAGTGGATGCACAGTCA 59.798 52.381 20.21 0.74 0.00 3.41
8071 10351 4.546829 AGCGTAATAGGGTGAAGACAAA 57.453 40.909 0.00 0.00 0.00 2.83
8087 10367 3.512680 GACAAATCGTCTAGTGGACAGG 58.487 50.000 7.46 0.00 44.70 4.00
8088 10368 2.271800 CAAATCGTCTAGTGGACAGGC 58.728 52.381 7.46 0.00 44.70 4.85
8089 10369 0.824759 AATCGTCTAGTGGACAGGCC 59.175 55.000 7.46 0.00 44.70 5.19
8090 10370 1.043673 ATCGTCTAGTGGACAGGCCC 61.044 60.000 7.46 0.00 44.70 5.80
8091 10371 2.893398 GTCTAGTGGACAGGCCCG 59.107 66.667 0.00 0.00 43.94 6.13
8092 10372 2.363795 TCTAGTGGACAGGCCCGG 60.364 66.667 0.00 0.00 34.97 5.73
8093 10373 3.470888 CTAGTGGACAGGCCCGGG 61.471 72.222 19.09 19.09 34.97 5.73
8111 10391 2.045045 CCCATGGGTGTGCGACAT 60.045 61.111 23.93 0.00 0.00 3.06
8112 10392 2.409055 CCCATGGGTGTGCGACATG 61.409 63.158 23.93 0.00 41.15 3.21
8113 10393 1.675310 CCATGGGTGTGCGACATGT 60.675 57.895 2.85 0.00 40.16 3.21
8114 10394 1.503091 CATGGGTGTGCGACATGTG 59.497 57.895 1.15 0.00 37.72 3.21
8115 10395 2.334946 ATGGGTGTGCGACATGTGC 61.335 57.895 1.15 8.25 0.00 4.57
8116 10396 4.088762 GGGTGTGCGACATGTGCG 62.089 66.667 1.15 8.23 34.24 5.34
8137 10417 4.621087 GCACAGGGCCCCCAGTTT 62.621 66.667 21.43 0.00 38.92 2.66
8138 10418 2.201210 CACAGGGCCCCCAGTTTT 59.799 61.111 21.43 0.00 38.92 2.43
8139 10419 2.201210 ACAGGGCCCCCAGTTTTG 59.799 61.111 21.43 11.23 38.92 2.44
8140 10420 2.399607 ACAGGGCCCCCAGTTTTGA 61.400 57.895 21.43 0.00 38.92 2.69
8141 10421 1.607467 CAGGGCCCCCAGTTTTGAG 60.607 63.158 21.43 0.00 38.92 3.02
8142 10422 2.283894 GGGCCCCCAGTTTTGAGG 60.284 66.667 12.23 0.00 35.81 3.86
8143 10423 2.283894 GGCCCCCAGTTTTGAGGG 60.284 66.667 0.00 0.00 45.04 4.30
8145 10425 2.283894 CCCCCAGTTTTGAGGGCC 60.284 66.667 0.00 0.00 44.06 5.80
8146 10426 2.283894 CCCCAGTTTTGAGGGCCC 60.284 66.667 16.46 16.46 44.06 5.80
8147 10427 2.283894 CCCAGTTTTGAGGGCCCC 60.284 66.667 21.43 11.17 38.44 5.80
8148 10428 2.283894 CCAGTTTTGAGGGCCCCC 60.284 66.667 21.43 7.52 0.00 5.40
8149 10429 2.525592 CAGTTTTGAGGGCCCCCA 59.474 61.111 21.43 11.35 38.92 4.96
8150 10430 1.152355 CAGTTTTGAGGGCCCCCAA 60.152 57.895 21.43 18.58 38.92 4.12
8151 10431 0.762461 CAGTTTTGAGGGCCCCCAAA 60.762 55.000 26.39 26.39 38.92 3.28
8152 10432 0.193321 AGTTTTGAGGGCCCCCAAAT 59.807 50.000 29.86 15.15 38.92 2.32
8153 10433 1.064003 GTTTTGAGGGCCCCCAAATT 58.936 50.000 29.86 5.31 38.92 1.82
8154 10434 1.423541 GTTTTGAGGGCCCCCAAATTT 59.576 47.619 29.86 4.44 38.92 1.82
8155 10435 1.826447 TTTGAGGGCCCCCAAATTTT 58.174 45.000 26.39 0.55 38.92 1.82
8156 10436 1.357137 TTGAGGGCCCCCAAATTTTC 58.643 50.000 17.76 6.34 38.92 2.29
8157 10437 0.902516 TGAGGGCCCCCAAATTTTCG 60.903 55.000 21.43 0.00 38.92 3.46
8158 10438 0.613572 GAGGGCCCCCAAATTTTCGA 60.614 55.000 21.43 0.00 38.92 3.71
8159 10439 0.178918 AGGGCCCCCAAATTTTCGAA 60.179 50.000 21.43 0.00 38.92 3.71
8160 10440 0.036765 GGGCCCCCAAATTTTCGAAC 60.037 55.000 12.23 0.00 35.81 3.95
8161 10441 0.682292 GGCCCCCAAATTTTCGAACA 59.318 50.000 0.00 0.00 0.00 3.18
8162 10442 1.337728 GGCCCCCAAATTTTCGAACAG 60.338 52.381 0.00 0.00 0.00 3.16
8163 10443 1.343142 GCCCCCAAATTTTCGAACAGT 59.657 47.619 0.00 0.00 0.00 3.55
8164 10444 2.866065 GCCCCCAAATTTTCGAACAGTG 60.866 50.000 0.00 0.00 0.00 3.66
8165 10445 2.403259 CCCCAAATTTTCGAACAGTGC 58.597 47.619 0.00 0.00 0.00 4.40
8166 10446 2.223923 CCCCAAATTTTCGAACAGTGCA 60.224 45.455 0.00 0.00 0.00 4.57
8167 10447 3.452474 CCCAAATTTTCGAACAGTGCAA 58.548 40.909 0.00 0.00 0.00 4.08
8168 10448 3.490526 CCCAAATTTTCGAACAGTGCAAG 59.509 43.478 0.00 0.00 0.00 4.01
8169 10449 4.358851 CCAAATTTTCGAACAGTGCAAGA 58.641 39.130 0.00 0.00 0.00 3.02
8170 10450 4.984161 CCAAATTTTCGAACAGTGCAAGAT 59.016 37.500 0.00 0.00 0.00 2.40
8171 10451 5.107760 CCAAATTTTCGAACAGTGCAAGATG 60.108 40.000 0.00 0.00 0.00 2.90
8172 10452 3.624326 TTTTCGAACAGTGCAAGATGG 57.376 42.857 0.00 0.00 0.00 3.51
8173 10453 0.874390 TTCGAACAGTGCAAGATGGC 59.126 50.000 0.00 0.00 0.00 4.40
8174 10454 0.955428 TCGAACAGTGCAAGATGGCC 60.955 55.000 0.00 0.00 0.00 5.36
8175 10455 0.957395 CGAACAGTGCAAGATGGCCT 60.957 55.000 3.32 0.00 0.00 5.19
8176 10456 0.524862 GAACAGTGCAAGATGGCCTG 59.475 55.000 3.32 0.00 37.78 4.85
8177 10457 0.178981 AACAGTGCAAGATGGCCTGT 60.179 50.000 3.32 0.00 42.85 4.00
8178 10458 0.692476 ACAGTGCAAGATGGCCTGTA 59.308 50.000 3.32 0.00 40.82 2.74
8179 10459 1.089920 CAGTGCAAGATGGCCTGTAC 58.910 55.000 3.32 3.22 31.57 2.90
8180 10460 0.692476 AGTGCAAGATGGCCTGTACA 59.308 50.000 12.36 0.00 0.00 2.90
8181 10461 1.283029 AGTGCAAGATGGCCTGTACAT 59.717 47.619 12.36 0.00 0.00 2.29
8182 10462 1.672881 GTGCAAGATGGCCTGTACATC 59.327 52.381 3.32 0.00 43.87 3.06
8183 10463 1.281577 TGCAAGATGGCCTGTACATCA 59.718 47.619 3.32 0.00 45.49 3.07
8184 10464 2.092267 TGCAAGATGGCCTGTACATCAT 60.092 45.455 3.32 1.00 45.49 2.45
8185 10465 2.954318 GCAAGATGGCCTGTACATCATT 59.046 45.455 3.32 0.00 45.49 2.57
8186 10466 3.382546 GCAAGATGGCCTGTACATCATTT 59.617 43.478 3.32 0.00 45.49 2.32
8187 10467 4.498682 GCAAGATGGCCTGTACATCATTTC 60.499 45.833 3.32 0.00 45.49 2.17
8188 10468 3.825328 AGATGGCCTGTACATCATTTCC 58.175 45.455 3.32 0.00 45.49 3.13
8189 10469 2.036958 TGGCCTGTACATCATTTCCG 57.963 50.000 3.32 0.00 0.00 4.30
8190 10470 1.557371 TGGCCTGTACATCATTTCCGA 59.443 47.619 3.32 0.00 0.00 4.55
8191 10471 2.213499 GGCCTGTACATCATTTCCGAG 58.787 52.381 0.00 0.00 0.00 4.63
8192 10472 2.420129 GGCCTGTACATCATTTCCGAGT 60.420 50.000 0.00 0.00 0.00 4.18
8193 10473 3.181469 GGCCTGTACATCATTTCCGAGTA 60.181 47.826 0.00 0.00 0.00 2.59
8194 10474 4.051922 GCCTGTACATCATTTCCGAGTAG 58.948 47.826 0.00 0.00 0.00 2.57
8195 10475 4.202121 GCCTGTACATCATTTCCGAGTAGA 60.202 45.833 0.00 0.00 0.00 2.59
8196 10476 5.681437 GCCTGTACATCATTTCCGAGTAGAA 60.681 44.000 0.00 0.00 0.00 2.10
8197 10477 5.980116 CCTGTACATCATTTCCGAGTAGAAG 59.020 44.000 0.00 0.00 0.00 2.85
8198 10478 5.902681 TGTACATCATTTCCGAGTAGAAGG 58.097 41.667 0.00 0.00 0.00 3.46
8199 10479 3.798202 ACATCATTTCCGAGTAGAAGGC 58.202 45.455 0.00 0.00 0.00 4.35
8200 10480 2.981859 TCATTTCCGAGTAGAAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
8201 10481 1.485066 TCATTTCCGAGTAGAAGGCCC 59.515 52.381 0.00 0.00 0.00 5.80
8202 10482 1.209504 CATTTCCGAGTAGAAGGCCCA 59.790 52.381 0.00 0.00 0.00 5.36
8203 10483 0.902531 TTTCCGAGTAGAAGGCCCAG 59.097 55.000 0.00 0.00 0.00 4.45
8204 10484 0.976073 TTCCGAGTAGAAGGCCCAGG 60.976 60.000 0.00 0.00 0.00 4.45
8205 10485 1.686110 CCGAGTAGAAGGCCCAGGT 60.686 63.158 0.00 0.00 0.00 4.00
8206 10486 1.677637 CCGAGTAGAAGGCCCAGGTC 61.678 65.000 0.00 0.00 0.00 3.85
8207 10487 1.817209 GAGTAGAAGGCCCAGGTCG 59.183 63.158 0.00 0.00 0.00 4.79
8208 10488 1.677637 GAGTAGAAGGCCCAGGTCGG 61.678 65.000 0.00 0.00 0.00 4.79
8209 10489 1.988406 GTAGAAGGCCCAGGTCGGT 60.988 63.158 0.00 0.00 0.00 4.69
8210 10490 0.685458 GTAGAAGGCCCAGGTCGGTA 60.685 60.000 0.00 0.00 0.00 4.02
8211 10491 0.041535 TAGAAGGCCCAGGTCGGTAA 59.958 55.000 0.00 0.00 0.00 2.85
8212 10492 1.078637 GAAGGCCCAGGTCGGTAAC 60.079 63.158 0.00 0.00 0.00 2.50
8221 10501 3.116531 GTCGGTAACCAGGCACGC 61.117 66.667 0.00 0.00 0.00 5.34
8222 10502 3.617735 TCGGTAACCAGGCACGCA 61.618 61.111 0.00 0.00 0.00 5.24
8223 10503 2.666862 CGGTAACCAGGCACGCAA 60.667 61.111 0.00 0.00 0.00 4.85
8224 10504 2.951458 GGTAACCAGGCACGCAAC 59.049 61.111 0.00 0.00 0.00 4.17
8225 10505 2.622962 GGTAACCAGGCACGCAACC 61.623 63.158 0.00 0.00 0.00 3.77
8226 10506 2.281900 TAACCAGGCACGCAACCC 60.282 61.111 0.00 0.00 0.00 4.11
8227 10507 3.121406 TAACCAGGCACGCAACCCA 62.121 57.895 0.00 0.00 0.00 4.51
8229 10509 4.954970 CCAGGCACGCAACCCACT 62.955 66.667 0.00 0.00 0.00 4.00
8230 10510 2.031919 CAGGCACGCAACCCACTA 59.968 61.111 0.00 0.00 0.00 2.74
8231 10511 1.599518 CAGGCACGCAACCCACTAA 60.600 57.895 0.00 0.00 0.00 2.24
8232 10512 1.149627 AGGCACGCAACCCACTAAA 59.850 52.632 0.00 0.00 0.00 1.85
8233 10513 0.251165 AGGCACGCAACCCACTAAAT 60.251 50.000 0.00 0.00 0.00 1.40
8234 10514 0.109319 GGCACGCAACCCACTAAATG 60.109 55.000 0.00 0.00 0.00 2.32
8244 10524 0.947244 CCACTAAATGGCTCCATCGC 59.053 55.000 1.31 0.00 43.24 4.58
8245 10525 1.475751 CCACTAAATGGCTCCATCGCT 60.476 52.381 1.31 0.00 43.24 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.030216 TGGGTGTGATTAGATAGCTCACA 58.970 43.478 0.00 0.00 45.08 3.58
1 2 4.672587 TGGGTGTGATTAGATAGCTCAC 57.327 45.455 0.00 0.00 39.74 3.51
2 3 5.692115 TTTGGGTGTGATTAGATAGCTCA 57.308 39.130 0.00 0.00 0.00 4.26
3 4 6.203723 GTCATTTGGGTGTGATTAGATAGCTC 59.796 42.308 0.00 0.00 0.00 4.09
43 44 5.443283 CCTTTTATAGGTTAAGGGGTGACC 58.557 45.833 0.00 0.00 44.64 4.02
96 97 5.053811 ACAAGTGTTGTGTGATCGAATGTA 58.946 37.500 0.00 0.00 43.48 2.29
107 108 1.931172 GTGAGCGTACAAGTGTTGTGT 59.069 47.619 2.50 0.00 45.03 3.72
269 274 0.322098 TAAGGGGACAACACGGCATG 60.322 55.000 0.00 0.00 0.00 4.06
274 279 3.188460 CAGAAACATAAGGGGACAACACG 59.812 47.826 0.00 0.00 0.00 4.49
275 280 3.057526 GCAGAAACATAAGGGGACAACAC 60.058 47.826 0.00 0.00 0.00 3.32
277 282 3.421844 AGCAGAAACATAAGGGGACAAC 58.578 45.455 0.00 0.00 0.00 3.32
278 283 3.330701 AGAGCAGAAACATAAGGGGACAA 59.669 43.478 0.00 0.00 0.00 3.18
279 284 2.912956 AGAGCAGAAACATAAGGGGACA 59.087 45.455 0.00 0.00 0.00 4.02
280 285 3.636153 AGAGCAGAAACATAAGGGGAC 57.364 47.619 0.00 0.00 0.00 4.46
282 287 4.082125 ACAAAGAGCAGAAACATAAGGGG 58.918 43.478 0.00 0.00 0.00 4.79
284 289 5.695851 ACACAAAGAGCAGAAACATAAGG 57.304 39.130 0.00 0.00 0.00 2.69
285 290 6.792250 CGTTACACAAAGAGCAGAAACATAAG 59.208 38.462 0.00 0.00 0.00 1.73
286 291 6.259167 ACGTTACACAAAGAGCAGAAACATAA 59.741 34.615 0.00 0.00 0.00 1.90
287 292 5.756347 ACGTTACACAAAGAGCAGAAACATA 59.244 36.000 0.00 0.00 0.00 2.29
288 293 4.574828 ACGTTACACAAAGAGCAGAAACAT 59.425 37.500 0.00 0.00 0.00 2.71
362 367 4.228567 TGTCGGCGTGGAAGCACA 62.229 61.111 6.85 0.00 39.27 4.57
384 389 3.816523 GCTACTCCTCGCTAATGACTACT 59.183 47.826 0.00 0.00 0.00 2.57
413 418 2.092103 AGGTAGCCCACAACAGAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
453 458 2.112998 ACCCTACATAGCGGCTTACAA 58.887 47.619 8.26 0.00 0.00 2.41
571 576 2.158559 TGCTCTTCGCTTTATTGGCAA 58.841 42.857 0.68 0.68 40.11 4.52
597 602 3.314357 AGTTGTAAAGTTCTTGGCGTTCC 59.686 43.478 0.00 0.00 0.00 3.62
637 642 2.927477 TGGATATCTTTGTGCGACGAAC 59.073 45.455 0.00 0.00 0.00 3.95
671 676 1.273327 GGCAGCAAGTTTAGCCACATT 59.727 47.619 0.00 0.00 46.26 2.71
702 707 6.319911 AGTTTTTGGCTTTCTAGATATGCTCC 59.680 38.462 0.00 0.00 0.00 4.70
711 716 6.739112 AGCTGTAAAGTTTTTGGCTTTCTAG 58.261 36.000 0.00 0.00 37.37 2.43
712 717 6.709018 AGCTGTAAAGTTTTTGGCTTTCTA 57.291 33.333 0.00 0.00 37.37 2.10
780 785 5.528870 AGTTTAGCACATACAAAAAGGCAC 58.471 37.500 0.00 0.00 0.00 5.01
781 786 5.782893 AGTTTAGCACATACAAAAAGGCA 57.217 34.783 0.00 0.00 0.00 4.75
782 787 5.107491 GCAAGTTTAGCACATACAAAAAGGC 60.107 40.000 0.00 0.00 0.00 4.35
783 788 6.144402 CAGCAAGTTTAGCACATACAAAAAGG 59.856 38.462 0.00 0.00 0.00 3.11
818 825 6.658816 TGTTTGGCTTTCTAATATGCTCTTCA 59.341 34.615 0.00 0.00 0.00 3.02
842 850 8.559536 AGTTGTTATGTGACAATCTGTAAAGTG 58.440 33.333 0.00 0.00 41.18 3.16
894 902 1.740585 TGCACGTATAAAAAGGCGCAT 59.259 42.857 10.83 0.00 0.00 4.73
940 948 2.618241 TGATGTGTGAGCAAACTGTTCC 59.382 45.455 0.00 0.00 0.00 3.62
986 994 2.224621 ACATCCATTGCCGAGGGATAAG 60.225 50.000 0.00 0.00 46.84 1.73
1066 1074 3.870538 TGAGCTCTTATGGCCATCAAT 57.129 42.857 24.80 0.27 0.00 2.57
1167 1175 8.752005 ATATTACTGCATATGAAACACCAAGT 57.248 30.769 6.97 0.00 0.00 3.16
1218 1226 2.911484 CTCGAAGCTGCCCTAAAGAAT 58.089 47.619 0.00 0.00 0.00 2.40
1281 1289 9.268268 GGTGCACAAATAGCTAATAACATACTA 57.732 33.333 20.43 0.00 0.00 1.82
1368 1378 2.850695 AGGAACGGAGGGAGTAAGAT 57.149 50.000 0.00 0.00 0.00 2.40
1392 1402 9.442047 CTTGTTGAAATCTCTACAAAGACCTAT 57.558 33.333 0.00 0.00 43.56 2.57
1393 1403 8.429641 ACTTGTTGAAATCTCTACAAAGACCTA 58.570 33.333 0.00 0.00 43.56 3.08
1394 1404 7.227512 CACTTGTTGAAATCTCTACAAAGACCT 59.772 37.037 0.00 0.00 43.56 3.85
1395 1405 7.226720 TCACTTGTTGAAATCTCTACAAAGACC 59.773 37.037 0.00 0.00 43.56 3.85
1396 1406 8.064814 GTCACTTGTTGAAATCTCTACAAAGAC 58.935 37.037 10.49 10.49 43.56 3.01
1397 1407 7.987458 AGTCACTTGTTGAAATCTCTACAAAGA 59.013 33.333 0.00 0.00 43.56 2.52
1398 1408 8.147642 AGTCACTTGTTGAAATCTCTACAAAG 57.852 34.615 0.00 0.00 43.56 2.77
1399 1409 9.778741 ATAGTCACTTGTTGAAATCTCTACAAA 57.221 29.630 0.00 0.00 43.56 2.83
1404 1414 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
1405 1415 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
1406 1416 8.692710 TCCGTATATAGTCACTTGTTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
1407 1417 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
1408 1418 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
1409 1419 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
1410 1420 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
1411 1421 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
1412 1422 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
1413 1423 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
1414 1424 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
1415 1425 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
1416 1426 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
1417 1427 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
1418 1428 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
1419 1429 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
1420 1430 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
1421 1431 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
1422 1432 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
1423 1433 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
1424 1434 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
1425 1435 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
1426 1436 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1427 1437 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1428 1438 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1429 1439 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1430 1440 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1431 1441 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1470 1480 9.653287 CAAATGAACTACCATATACGGATGTAT 57.347 33.333 0.00 0.00 43.62 2.29
1471 1481 8.862085 TCAAATGAACTACCATATACGGATGTA 58.138 33.333 0.00 0.00 34.45 2.29
1472 1482 7.732025 TCAAATGAACTACCATATACGGATGT 58.268 34.615 0.00 0.00 0.00 3.06
1473 1483 8.601845 TTCAAATGAACTACCATATACGGATG 57.398 34.615 0.00 0.00 0.00 3.51
1474 1484 9.793259 ATTTCAAATGAACTACCATATACGGAT 57.207 29.630 0.00 0.00 33.13 4.18
1475 1485 9.268268 GATTTCAAATGAACTACCATATACGGA 57.732 33.333 0.00 0.00 33.13 4.69
1476 1486 9.273016 AGATTTCAAATGAACTACCATATACGG 57.727 33.333 0.00 0.00 33.13 4.02
1502 1512 9.211485 CCGTTCCTAAATACAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 34.90 2.10
1503 1513 9.211485 TCCGTTCCTAAATACAAGTCTTTTTAG 57.789 33.333 7.75 7.75 33.47 1.85
1504 1514 9.558396 TTCCGTTCCTAAATACAAGTCTTTTTA 57.442 29.630 0.00 0.00 0.00 1.52
1505 1515 8.454570 TTCCGTTCCTAAATACAAGTCTTTTT 57.545 30.769 0.00 0.00 0.00 1.94
1506 1516 7.935210 TCTTCCGTTCCTAAATACAAGTCTTTT 59.065 33.333 0.00 0.00 0.00 2.27
1507 1517 7.447594 TCTTCCGTTCCTAAATACAAGTCTTT 58.552 34.615 0.00 0.00 0.00 2.52
1508 1518 7.001099 TCTTCCGTTCCTAAATACAAGTCTT 57.999 36.000 0.00 0.00 0.00 3.01
1509 1519 6.600882 TCTTCCGTTCCTAAATACAAGTCT 57.399 37.500 0.00 0.00 0.00 3.24
1510 1520 7.662604 TTTCTTCCGTTCCTAAATACAAGTC 57.337 36.000 0.00 0.00 0.00 3.01
1511 1521 9.901172 ATATTTCTTCCGTTCCTAAATACAAGT 57.099 29.630 0.00 0.00 0.00 3.16
1659 1672 2.813172 GACGGGCTAGTACATACTCTCC 59.187 54.545 0.00 0.00 37.73 3.71
1670 1683 1.263356 TTGCTACTTGACGGGCTAGT 58.737 50.000 2.96 2.96 36.54 2.57
1719 1732 8.472007 TGGACATATCACTTGTAAACCTTTTT 57.528 30.769 0.00 0.00 0.00 1.94
1724 1737 8.519526 TGATTTTGGACATATCACTTGTAAACC 58.480 33.333 0.00 0.00 0.00 3.27
1807 1822 2.495669 GAGAGGGAGAGAAAGTGAGTGG 59.504 54.545 0.00 0.00 0.00 4.00
1842 2204 6.739331 TTTTCTTTTGGAGAGAGAGAGAGT 57.261 37.500 0.00 0.00 35.37 3.24
1877 2247 4.761739 TCGCAAGATCTTTCCATTTTCAGT 59.238 37.500 4.86 0.00 45.01 3.41
1939 2309 0.386113 GAGAGATACGCCTGACACCC 59.614 60.000 0.00 0.00 0.00 4.61
2373 2745 1.069049 AGGCAATAATTTCCCGCATGC 59.931 47.619 7.91 7.91 0.00 4.06
2398 2770 7.110628 CGTGAATCACATTTGCGTATCTAAATG 59.889 37.037 14.24 0.00 45.28 2.32
2407 2779 0.109781 GGCGTGAATCACATTTGCGT 60.110 50.000 14.24 0.00 33.40 5.24
2566 2938 1.600164 CGTCCACAGTTGCCACATTTG 60.600 52.381 0.00 0.00 0.00 2.32
2656 3028 1.989706 CCACATGCCATGGATCATGA 58.010 50.000 28.79 0.00 43.81 3.07
2689 3061 5.296283 CCAAGAACTTGATCTGATTGCCTAG 59.704 44.000 14.99 0.00 42.93 3.02
2690 3062 5.045651 TCCAAGAACTTGATCTGATTGCCTA 60.046 40.000 14.99 0.00 42.93 3.93
2691 3063 4.015084 CCAAGAACTTGATCTGATTGCCT 58.985 43.478 14.99 0.00 42.93 4.75
2730 3104 7.305648 GCAGAACTCAAAGAAGAAAATTGAACG 60.306 37.037 0.00 0.00 33.08 3.95
2736 3110 7.067981 ACTGAAGCAGAACTCAAAGAAGAAAAT 59.932 33.333 0.82 0.00 35.18 1.82
2779 3153 3.247648 CCACCACATCCGAAATCGTAATC 59.752 47.826 1.79 0.00 37.74 1.75
2861 3236 2.562298 GAGGCAACCACCATTGATTTGA 59.438 45.455 0.00 0.00 37.17 2.69
2938 3313 3.639538 TCTATCATCGCCTAAAACTCGC 58.360 45.455 0.00 0.00 0.00 5.03
3010 3385 3.644966 TCCAAGTTCTTCCTGTTGTGT 57.355 42.857 0.00 0.00 0.00 3.72
3051 3426 5.353400 GTCAGATGTCTCAATCAGCAATTCA 59.647 40.000 0.00 0.00 0.00 2.57
3052 3427 5.502058 CGTCAGATGTCTCAATCAGCAATTC 60.502 44.000 0.00 0.00 0.00 2.17
3053 3428 4.331992 CGTCAGATGTCTCAATCAGCAATT 59.668 41.667 0.00 0.00 0.00 2.32
3054 3429 3.869832 CGTCAGATGTCTCAATCAGCAAT 59.130 43.478 0.00 0.00 0.00 3.56
3055 3430 3.256558 CGTCAGATGTCTCAATCAGCAA 58.743 45.455 0.00 0.00 0.00 3.91
3056 3431 2.232208 ACGTCAGATGTCTCAATCAGCA 59.768 45.455 0.00 0.00 0.00 4.41
3057 3432 2.857152 GACGTCAGATGTCTCAATCAGC 59.143 50.000 11.55 0.00 31.58 4.26
3058 3433 3.443037 GGACGTCAGATGTCTCAATCAG 58.557 50.000 18.91 0.00 34.62 2.90
3264 5012 4.229876 GGCATTGAGTTCAGCTTGTTTAC 58.770 43.478 0.00 0.00 0.00 2.01
3362 5110 0.315251 TCCGAGAACACTCTGCACAG 59.685 55.000 0.00 0.00 29.54 3.66
3549 5297 5.760743 TCGTGAGAGATGACGATTAAGAGAT 59.239 40.000 0.00 0.00 39.59 2.75
3747 5495 5.880054 TGCCTTCTTCTAAATGCTAACAC 57.120 39.130 0.00 0.00 0.00 3.32
3844 5592 0.411058 AAGGCTGGCCCTGAGATTTT 59.589 50.000 8.11 0.00 45.62 1.82
3850 5598 2.858476 TTGGAAGGCTGGCCCTGA 60.858 61.111 8.11 0.00 45.62 3.86
3999 5748 3.339253 ACTGTCTTGTGATAGCATGCA 57.661 42.857 21.98 6.36 35.22 3.96
4086 5835 4.394729 TCCTGGTACACAAAACAGATTCC 58.605 43.478 0.00 0.00 32.86 3.01
4200 5949 7.671302 ACTTATAAACGATGATGACTGGCTAT 58.329 34.615 0.00 0.00 0.00 2.97
4634 6384 6.402222 GTGATCTCCGGCAAGAATTAGATAT 58.598 40.000 0.00 0.00 0.00 1.63
5046 6799 6.040278 TGGTGTAAATGCATTCAACAGAAGAA 59.960 34.615 21.54 8.38 0.00 2.52
5072 6825 1.267806 AGATCAAAACAGGCAGCAACG 59.732 47.619 0.00 0.00 0.00 4.10
5399 7166 3.649073 TGGAACTGCATATCCGATAACG 58.351 45.455 11.95 0.00 38.63 3.18
5573 7437 3.988379 GTGAAAGCACACCTGAAATCA 57.012 42.857 0.00 0.00 44.51 2.57
5768 7635 4.015872 TCCTTCACCAATAACACTGTCC 57.984 45.455 0.00 0.00 0.00 4.02
5861 7775 8.551122 TTTAAAAGCTTAAAGTTCGTTAGCAC 57.449 30.769 0.00 0.00 33.09 4.40
5997 7915 2.364324 AGTTCTACGTGGACAGCAAAGA 59.636 45.455 0.00 0.00 0.00 2.52
5998 7916 2.476619 CAGTTCTACGTGGACAGCAAAG 59.523 50.000 0.00 0.00 0.00 2.77
5999 7917 2.479837 CAGTTCTACGTGGACAGCAAA 58.520 47.619 0.00 0.00 0.00 3.68
6000 7918 1.872237 GCAGTTCTACGTGGACAGCAA 60.872 52.381 0.00 0.00 0.00 3.91
6172 8090 2.286418 CCGCTTCAGTCTGTTGAACAAC 60.286 50.000 10.28 10.28 41.50 3.32
6192 8119 6.575162 TTTTCAGCAAGGAGTTTCTTATCC 57.425 37.500 0.00 0.00 35.71 2.59
6428 8355 8.082242 GGCCTAAAGCTTGTTATATAATGGTTG 58.918 37.037 0.00 0.00 43.05 3.77
6571 8502 6.452244 AAAATTCCTGCGATTTTCTTTTCG 57.548 33.333 0.00 0.00 32.76 3.46
6582 8565 9.042008 GTCAAGTAGATTATAAAATTCCTGCGA 57.958 33.333 0.00 0.00 0.00 5.10
6664 8648 1.621317 TCAGCACGTCTTAACCATCCA 59.379 47.619 0.00 0.00 0.00 3.41
6713 8697 3.011821 AGAGACTCCTCCCATGTCAAGTA 59.988 47.826 0.00 0.00 40.30 2.24
6748 8732 7.872113 ATCTTTGGTGATATTCCAGTTCTTC 57.128 36.000 1.83 0.00 36.28 2.87
6890 8874 8.752005 ATATAACATAGGACAACAACAGCAAT 57.248 30.769 0.00 0.00 0.00 3.56
7458 9448 1.619827 CCCTTGGCACACATTTCACAT 59.380 47.619 0.00 0.00 39.29 3.21
7582 9573 5.104527 TCACAGTTCCTAATACATCAAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
7732 9723 6.633500 AGGCTTTCAGCGCATTTTATATAA 57.367 33.333 11.47 0.00 43.62 0.98
7733 9724 7.921786 ATAGGCTTTCAGCGCATTTTATATA 57.078 32.000 11.47 0.00 43.62 0.86
7744 9991 1.009829 AGCGAAATAGGCTTTCAGCG 58.990 50.000 0.00 0.00 43.62 5.18
7747 9994 5.758296 CCTACAATAGCGAAATAGGCTTTCA 59.242 40.000 0.00 0.00 41.80 2.69
7762 10009 6.315551 CGTTCGATACCTGATCCTACAATAG 58.684 44.000 0.00 0.00 0.00 1.73
7763 10010 5.182570 CCGTTCGATACCTGATCCTACAATA 59.817 44.000 0.00 0.00 0.00 1.90
7827 10107 6.479001 CCAACCAGACTTATATTAGGTGAACG 59.521 42.308 0.00 0.00 0.00 3.95
7959 10239 5.702670 ACGAACATGTCTCTGAATGTCAAAT 59.297 36.000 0.00 0.00 35.99 2.32
7982 10262 2.000447 GAATAGTTGTGGACTGCCGAC 59.000 52.381 0.00 0.00 39.48 4.79
8046 10326 4.251268 GTCTTCACCCTATTACGCTTGTT 58.749 43.478 0.00 0.00 0.00 2.83
8094 10374 2.045045 ATGTCGCACACCCATGGG 60.045 61.111 30.23 30.23 42.03 4.00
8095 10375 1.675310 ACATGTCGCACACCCATGG 60.675 57.895 4.14 4.14 40.16 3.66
8096 10376 1.503091 CACATGTCGCACACCCATG 59.497 57.895 0.00 0.00 41.31 3.66
8097 10377 2.334946 GCACATGTCGCACACCCAT 61.335 57.895 13.27 0.00 0.00 4.00
8098 10378 2.977456 GCACATGTCGCACACCCA 60.977 61.111 13.27 0.00 0.00 4.51
8099 10379 4.088762 CGCACATGTCGCACACCC 62.089 66.667 16.80 0.00 0.00 4.61
8120 10400 4.621087 AAACTGGGGGCCCTGTGC 62.621 66.667 24.38 5.99 45.53 4.57
8121 10401 2.201210 AAAACTGGGGGCCCTGTG 59.799 61.111 24.38 15.01 45.53 3.66
8123 10403 1.607467 CTCAAAACTGGGGGCCCTG 60.607 63.158 24.38 18.02 40.33 4.45
8124 10404 2.854076 CTCAAAACTGGGGGCCCT 59.146 61.111 24.38 0.00 36.94 5.19
8125 10405 2.283894 CCTCAAAACTGGGGGCCC 60.284 66.667 15.76 15.76 0.00 5.80
8126 10406 2.283894 CCCTCAAAACTGGGGGCC 60.284 66.667 0.00 0.00 39.76 5.80
8128 10408 2.283894 GGCCCTCAAAACTGGGGG 60.284 66.667 5.64 5.64 43.53 5.40
8129 10409 2.283894 GGGCCCTCAAAACTGGGG 60.284 66.667 17.04 0.00 43.53 4.96
8130 10410 2.283894 GGGGCCCTCAAAACTGGG 60.284 66.667 24.38 0.00 46.00 4.45
8131 10411 2.283894 GGGGGCCCTCAAAACTGG 60.284 66.667 24.38 0.00 0.00 4.00
8132 10412 0.762461 TTTGGGGGCCCTCAAAACTG 60.762 55.000 41.93 0.00 36.94 3.16
8133 10413 0.193321 ATTTGGGGGCCCTCAAAACT 59.807 50.000 45.44 31.54 36.60 2.66
8134 10414 1.064003 AATTTGGGGGCCCTCAAAAC 58.936 50.000 45.44 19.14 36.60 2.43
8135 10415 1.826447 AAATTTGGGGGCCCTCAAAA 58.174 45.000 45.44 31.22 36.60 2.44
8136 10416 1.702401 GAAAATTTGGGGGCCCTCAAA 59.298 47.619 44.39 44.39 37.29 2.69
8137 10417 1.357137 GAAAATTTGGGGGCCCTCAA 58.643 50.000 34.36 34.36 36.94 3.02
8138 10418 0.902516 CGAAAATTTGGGGGCCCTCA 60.903 55.000 24.63 24.63 36.94 3.86
8139 10419 0.613572 TCGAAAATTTGGGGGCCCTC 60.614 55.000 24.38 21.26 36.94 4.30
8140 10420 0.178918 TTCGAAAATTTGGGGGCCCT 60.179 50.000 24.38 0.00 36.94 5.19
8141 10421 0.036765 GTTCGAAAATTTGGGGGCCC 60.037 55.000 15.76 15.76 0.00 5.80
8142 10422 0.682292 TGTTCGAAAATTTGGGGGCC 59.318 50.000 0.00 0.00 0.00 5.80
8143 10423 1.343142 ACTGTTCGAAAATTTGGGGGC 59.657 47.619 0.00 0.00 0.00 5.80
8144 10424 2.866065 GCACTGTTCGAAAATTTGGGGG 60.866 50.000 0.00 0.00 0.00 5.40
8145 10425 2.223923 TGCACTGTTCGAAAATTTGGGG 60.224 45.455 0.00 0.00 0.00 4.96
8146 10426 3.090952 TGCACTGTTCGAAAATTTGGG 57.909 42.857 0.00 0.00 0.00 4.12
8147 10427 4.358851 TCTTGCACTGTTCGAAAATTTGG 58.641 39.130 0.00 0.00 0.00 3.28
8148 10428 5.107760 CCATCTTGCACTGTTCGAAAATTTG 60.108 40.000 0.00 0.00 0.00 2.32
8149 10429 4.984161 CCATCTTGCACTGTTCGAAAATTT 59.016 37.500 0.00 0.00 0.00 1.82
8150 10430 4.549458 CCATCTTGCACTGTTCGAAAATT 58.451 39.130 0.00 0.00 0.00 1.82
8151 10431 3.612479 GCCATCTTGCACTGTTCGAAAAT 60.612 43.478 0.00 0.00 0.00 1.82
8152 10432 2.287547 GCCATCTTGCACTGTTCGAAAA 60.288 45.455 0.00 0.00 0.00 2.29
8153 10433 1.266718 GCCATCTTGCACTGTTCGAAA 59.733 47.619 0.00 0.00 0.00 3.46
8154 10434 0.874390 GCCATCTTGCACTGTTCGAA 59.126 50.000 0.00 0.00 0.00 3.71
8155 10435 0.955428 GGCCATCTTGCACTGTTCGA 60.955 55.000 0.00 0.00 0.00 3.71
8156 10436 0.957395 AGGCCATCTTGCACTGTTCG 60.957 55.000 5.01 0.00 0.00 3.95
8157 10437 0.524862 CAGGCCATCTTGCACTGTTC 59.475 55.000 5.01 0.00 0.00 3.18
8158 10438 0.178981 ACAGGCCATCTTGCACTGTT 60.179 50.000 5.01 0.00 38.66 3.16
8159 10439 0.692476 TACAGGCCATCTTGCACTGT 59.308 50.000 5.01 8.66 41.96 3.55
8160 10440 1.089920 GTACAGGCCATCTTGCACTG 58.910 55.000 5.01 0.00 36.34 3.66
8161 10441 0.692476 TGTACAGGCCATCTTGCACT 59.308 50.000 5.01 0.00 0.00 4.40
8162 10442 1.672881 GATGTACAGGCCATCTTGCAC 59.327 52.381 5.01 0.00 36.59 4.57
8163 10443 1.281577 TGATGTACAGGCCATCTTGCA 59.718 47.619 5.01 0.00 39.54 4.08
8164 10444 2.042686 TGATGTACAGGCCATCTTGC 57.957 50.000 5.01 0.00 39.54 4.01
8165 10445 4.037208 GGAAATGATGTACAGGCCATCTTG 59.963 45.833 5.01 0.00 39.54 3.02
8166 10446 4.210331 GGAAATGATGTACAGGCCATCTT 58.790 43.478 5.01 0.00 39.54 2.40
8167 10447 3.745480 CGGAAATGATGTACAGGCCATCT 60.745 47.826 5.01 0.00 39.54 2.90
8168 10448 2.549754 CGGAAATGATGTACAGGCCATC 59.450 50.000 5.01 0.00 39.32 3.51
8169 10449 2.172505 TCGGAAATGATGTACAGGCCAT 59.827 45.455 5.01 2.15 0.00 4.40
8170 10450 1.557371 TCGGAAATGATGTACAGGCCA 59.443 47.619 5.01 0.00 0.00 5.36
8171 10451 2.213499 CTCGGAAATGATGTACAGGCC 58.787 52.381 0.33 0.00 0.00 5.19
8172 10452 2.906354 ACTCGGAAATGATGTACAGGC 58.094 47.619 0.33 0.00 0.00 4.85
8173 10453 5.515797 TCTACTCGGAAATGATGTACAGG 57.484 43.478 0.33 0.00 0.00 4.00
8174 10454 5.980116 CCTTCTACTCGGAAATGATGTACAG 59.020 44.000 0.33 0.00 0.00 2.74
8175 10455 5.681437 GCCTTCTACTCGGAAATGATGTACA 60.681 44.000 0.00 0.00 0.00 2.90
8176 10456 4.745620 GCCTTCTACTCGGAAATGATGTAC 59.254 45.833 0.00 0.00 0.00 2.90
8177 10457 4.202223 GGCCTTCTACTCGGAAATGATGTA 60.202 45.833 0.00 0.00 0.00 2.29
8178 10458 3.432326 GGCCTTCTACTCGGAAATGATGT 60.432 47.826 0.00 0.00 0.00 3.06
8179 10459 3.134458 GGCCTTCTACTCGGAAATGATG 58.866 50.000 0.00 0.00 0.00 3.07
8180 10460 2.104963 GGGCCTTCTACTCGGAAATGAT 59.895 50.000 0.84 0.00 0.00 2.45
8181 10461 1.485066 GGGCCTTCTACTCGGAAATGA 59.515 52.381 0.84 0.00 0.00 2.57
8182 10462 1.209504 TGGGCCTTCTACTCGGAAATG 59.790 52.381 4.53 0.00 0.00 2.32
8183 10463 1.486726 CTGGGCCTTCTACTCGGAAAT 59.513 52.381 4.53 0.00 0.00 2.17
8184 10464 0.902531 CTGGGCCTTCTACTCGGAAA 59.097 55.000 4.53 0.00 0.00 3.13
8185 10465 0.976073 CCTGGGCCTTCTACTCGGAA 60.976 60.000 4.53 0.00 0.00 4.30
8186 10466 1.381327 CCTGGGCCTTCTACTCGGA 60.381 63.158 4.53 0.00 0.00 4.55
8187 10467 1.677637 GACCTGGGCCTTCTACTCGG 61.678 65.000 4.53 0.00 0.00 4.63
8188 10468 1.817209 GACCTGGGCCTTCTACTCG 59.183 63.158 4.53 0.00 0.00 4.18
8189 10469 1.677637 CCGACCTGGGCCTTCTACTC 61.678 65.000 4.53 0.00 0.00 2.59
8190 10470 1.686110 CCGACCTGGGCCTTCTACT 60.686 63.158 4.53 0.00 0.00 2.57
8191 10471 0.685458 TACCGACCTGGGCCTTCTAC 60.685 60.000 4.53 0.00 44.64 2.59
8192 10472 0.041535 TTACCGACCTGGGCCTTCTA 59.958 55.000 4.53 0.00 44.64 2.10
8193 10473 1.229400 TTACCGACCTGGGCCTTCT 60.229 57.895 4.53 0.00 44.64 2.85
8194 10474 1.078637 GTTACCGACCTGGGCCTTC 60.079 63.158 4.53 0.00 44.64 3.46
8195 10475 2.599757 GGTTACCGACCTGGGCCTT 61.600 63.158 4.53 0.00 45.55 4.35
8196 10476 3.007323 GGTTACCGACCTGGGCCT 61.007 66.667 4.53 0.00 45.55 5.19
8204 10484 3.116531 GCGTGCCTGGTTACCGAC 61.117 66.667 0.00 0.00 0.00 4.79
8205 10485 3.166490 TTGCGTGCCTGGTTACCGA 62.166 57.895 0.00 0.00 0.00 4.69
8206 10486 2.666862 TTGCGTGCCTGGTTACCG 60.667 61.111 0.00 0.00 0.00 4.02
8207 10487 2.622962 GGTTGCGTGCCTGGTTACC 61.623 63.158 0.00 0.00 0.00 2.85
8208 10488 2.622962 GGGTTGCGTGCCTGGTTAC 61.623 63.158 0.00 0.00 0.00 2.50
8209 10489 2.281900 GGGTTGCGTGCCTGGTTA 60.282 61.111 0.00 0.00 0.00 2.85
8210 10490 4.514585 TGGGTTGCGTGCCTGGTT 62.515 61.111 0.00 0.00 0.00 3.67
8212 10492 3.545124 TAGTGGGTTGCGTGCCTGG 62.545 63.158 0.00 0.00 0.00 4.45
8213 10493 1.169661 TTTAGTGGGTTGCGTGCCTG 61.170 55.000 0.00 0.00 0.00 4.85
8214 10494 0.251165 ATTTAGTGGGTTGCGTGCCT 60.251 50.000 0.00 0.00 0.00 4.75
8215 10495 0.109319 CATTTAGTGGGTTGCGTGCC 60.109 55.000 0.00 0.00 0.00 5.01
8216 10496 0.109319 CCATTTAGTGGGTTGCGTGC 60.109 55.000 0.00 0.00 44.79 5.34
8226 10506 1.959042 AGCGATGGAGCCATTTAGTG 58.041 50.000 3.11 0.00 36.70 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.